Multiple sequence alignment - TraesCS7A01G141400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G141400 chr7A 100.000 4347 0 0 1 4347 92897124 92892778 0.000000e+00 8028
1 TraesCS7A01G141400 chr7D 88.228 1529 110 44 2244 3711 90856176 90854657 0.000000e+00 1762
2 TraesCS7A01G141400 chr7D 89.089 1274 85 27 976 2199 90857530 90856261 0.000000e+00 1533
3 TraesCS7A01G141400 chr7D 92.236 747 29 13 3630 4347 90853823 90853077 0.000000e+00 1031
4 TraesCS7A01G141400 chr7D 81.856 959 74 42 15 917 90858545 90857631 0.000000e+00 715
5 TraesCS7A01G141400 chr7D 77.561 615 76 39 1047 1626 77084740 77085327 9.070000e-82 315
6 TraesCS7A01G141400 chr7B 84.727 1866 133 74 463 2199 42037873 42036031 0.000000e+00 1727
7 TraesCS7A01G141400 chr7B 88.842 1434 108 33 2242 3642 42035949 42034535 0.000000e+00 1714
8 TraesCS7A01G141400 chr7B 93.908 673 27 6 3689 4347 42032495 42031823 0.000000e+00 1003
9 TraesCS7A01G141400 chr7B 87.172 343 26 13 3639 3968 42033460 42033123 1.480000e-99 374
10 TraesCS7A01G141400 chr4B 87.354 427 37 9 1500 1918 624106703 624107120 1.410000e-129 473
11 TraesCS7A01G141400 chr6B 76.836 354 70 11 2344 2691 678738616 678738963 5.740000e-44 189
12 TraesCS7A01G141400 chr6A 83.000 200 29 5 1434 1630 594493812 594494009 4.470000e-40 176
13 TraesCS7A01G141400 chr6D 82.828 198 30 4 1435 1630 447907214 447907409 1.610000e-39 174
14 TraesCS7A01G141400 chr1A 91.379 116 10 0 4232 4347 104936432 104936317 4.500000e-35 159


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G141400 chr7A 92892778 92897124 4346 True 8028.00 8028 100.00000 1 4347 1 chr7A.!!$R1 4346
1 TraesCS7A01G141400 chr7D 90853077 90858545 5468 True 1260.25 1762 87.85225 15 4347 4 chr7D.!!$R1 4332
2 TraesCS7A01G141400 chr7D 77084740 77085327 587 False 315.00 315 77.56100 1047 1626 1 chr7D.!!$F1 579
3 TraesCS7A01G141400 chr7B 42031823 42037873 6050 True 1204.50 1727 88.66225 463 4347 4 chr7B.!!$R1 3884

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
371 386 0.035739 ACCGCCCTTTTCGTGTATGT 59.964 50.0 0.0 0.0 0.0 2.29 F
969 1091 0.037232 GCGGTAGTGAGTGAAGGCTT 60.037 55.0 0.0 0.0 0.0 4.35 F
2206 2422 0.107654 CTAGGGGCAGGTGTGTAAGC 60.108 60.0 0.0 0.0 0.0 3.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1857 2061 0.034059 GTACCGAGCTCCCATCCATG 59.966 60.0 8.47 0.0 0.0 3.66 R
2276 2536 0.321298 CCACCCCTGTAAACGTCCAG 60.321 60.0 0.00 0.0 0.0 3.86 R
3934 6678 0.170339 GGCAAATTTTCCTCGTCCCG 59.830 55.0 0.00 0.0 0.0 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 45 2.091333 GGGCCATTTTAGGATGGGAGAA 60.091 50.000 4.39 0.00 45.47 2.87
45 50 5.699143 CCATTTTAGGATGGGAGAACAGAT 58.301 41.667 0.00 0.00 42.36 2.90
56 61 3.370104 GGAGAACAGATGAAGAGGAGGA 58.630 50.000 0.00 0.00 0.00 3.71
60 65 3.127791 ACAGATGAAGAGGAGGACCAT 57.872 47.619 0.00 0.00 38.94 3.55
61 66 3.037549 ACAGATGAAGAGGAGGACCATC 58.962 50.000 0.00 0.00 38.94 3.51
63 68 2.091610 AGATGAAGAGGAGGACCATCGA 60.092 50.000 0.00 0.00 38.77 3.59
76 81 4.856801 ATCGATGCACCGTGGGGC 62.857 66.667 6.08 6.08 36.48 5.80
100 108 4.054825 TTCGTCGGTGTACGGCCC 62.055 66.667 0.00 0.00 46.45 5.80
120 128 4.603052 TGCCCCCATGCATGTATG 57.397 55.556 24.58 16.12 36.04 2.39
121 129 1.619700 TGCCCCCATGCATGTATGT 59.380 52.632 24.58 0.00 36.04 2.29
123 131 1.428525 TGCCCCCATGCATGTATGTAT 59.571 47.619 24.58 0.00 36.04 2.29
137 149 3.995048 TGTATGTATCTACCTCTCTCGCG 59.005 47.826 0.00 0.00 0.00 5.87
144 156 1.865970 CTACCTCTCTCGCGTCGTATT 59.134 52.381 5.77 0.00 0.00 1.89
147 159 1.202154 CCTCTCTCGCGTCGTATTGTT 60.202 52.381 5.77 0.00 0.00 2.83
149 161 1.465777 TCTCTCGCGTCGTATTGTTCA 59.534 47.619 5.77 0.00 0.00 3.18
164 176 0.384353 GTTCAGCTTTGAACGACGGC 60.384 55.000 0.00 0.00 38.75 5.68
165 177 0.812014 TTCAGCTTTGAACGACGGCA 60.812 50.000 0.00 0.00 0.00 5.69
166 178 1.082756 CAGCTTTGAACGACGGCAC 60.083 57.895 0.00 0.00 0.00 5.01
170 182 1.779569 CTTTGAACGACGGCACTACT 58.220 50.000 0.00 0.00 0.00 2.57
171 183 1.719780 CTTTGAACGACGGCACTACTC 59.280 52.381 0.00 0.00 0.00 2.59
172 184 0.038892 TTGAACGACGGCACTACTCC 60.039 55.000 0.00 0.00 0.00 3.85
173 185 1.174078 TGAACGACGGCACTACTCCA 61.174 55.000 0.00 0.00 0.00 3.86
174 186 0.038892 GAACGACGGCACTACTCCAA 60.039 55.000 0.00 0.00 0.00 3.53
175 187 0.038526 AACGACGGCACTACTCCAAG 60.039 55.000 0.00 0.00 0.00 3.61
176 188 1.177256 ACGACGGCACTACTCCAAGT 61.177 55.000 0.00 0.00 0.00 3.16
178 190 0.389948 GACGGCACTACTCCAAGTGG 60.390 60.000 6.17 0.00 45.75 4.00
180 192 0.892755 CGGCACTACTCCAAGTGGTA 59.107 55.000 6.17 0.00 45.75 3.25
188 203 6.388278 CACTACTCCAAGTGGTAGTAACTTC 58.612 44.000 5.61 0.00 44.36 3.01
192 207 6.990798 ACTCCAAGTGGTAGTAACTTCTTAC 58.009 40.000 0.00 0.00 35.70 2.34
198 213 6.675987 AGTGGTAGTAACTTCTTACAAGACG 58.324 40.000 0.00 0.00 35.56 4.18
199 214 6.264067 AGTGGTAGTAACTTCTTACAAGACGT 59.736 38.462 0.00 0.00 38.94 4.34
200 215 7.445402 AGTGGTAGTAACTTCTTACAAGACGTA 59.555 37.037 1.98 0.00 36.62 3.57
201 216 8.239998 GTGGTAGTAACTTCTTACAAGACGTAT 58.760 37.037 1.98 0.00 36.62 3.06
202 217 9.448438 TGGTAGTAACTTCTTACAAGACGTATA 57.552 33.333 1.98 0.00 36.62 1.47
203 218 9.709600 GGTAGTAACTTCTTACAAGACGTATAC 57.290 37.037 1.98 0.00 36.62 1.47
204 219 9.709600 GTAGTAACTTCTTACAAGACGTATACC 57.290 37.037 1.98 0.00 36.62 2.73
205 220 7.467623 AGTAACTTCTTACAAGACGTATACCG 58.532 38.462 1.98 0.00 36.62 4.02
206 221 7.119846 AGTAACTTCTTACAAGACGTATACCGT 59.880 37.037 1.98 0.00 42.81 4.83
207 222 7.217070 GTAACTTCTTACAAGACGTATACCGTG 59.783 40.741 1.98 0.49 40.06 4.94
256 271 1.420138 AGGGAGTGTTCCATCGTGTTT 59.580 47.619 0.00 0.00 45.98 2.83
269 284 4.976116 CCATCGTGTTTTTCTTCTTGTTCC 59.024 41.667 0.00 0.00 0.00 3.62
270 285 5.449862 CCATCGTGTTTTTCTTCTTGTTCCA 60.450 40.000 0.00 0.00 0.00 3.53
272 287 4.102649 CGTGTTTTTCTTCTTGTTCCACC 58.897 43.478 0.00 0.00 0.00 4.61
273 288 4.102649 GTGTTTTTCTTCTTGTTCCACCG 58.897 43.478 0.00 0.00 0.00 4.94
280 295 0.537653 TCTTGTTCCACCGTGTGTCA 59.462 50.000 0.00 0.00 0.00 3.58
288 303 5.583061 TGTTCCACCGTGTGTCATAATATTC 59.417 40.000 0.00 0.00 0.00 1.75
304 319 0.245539 ATTCCGTCGTGTACCCACTG 59.754 55.000 0.00 0.00 39.55 3.66
313 328 2.607635 CGTGTACCCACTGTAATCATGC 59.392 50.000 0.00 0.00 39.55 4.06
326 341 1.498865 ATCATGCCGTCCGAAATCGC 61.499 55.000 0.00 0.00 38.18 4.58
351 366 6.978343 CAAATGATTTGCATCAAGAATGGT 57.022 33.333 4.82 0.00 42.93 3.55
355 370 4.096231 TGATTTGCATCAAGAATGGTACCG 59.904 41.667 7.57 0.00 36.41 4.02
356 371 1.378531 TGCATCAAGAATGGTACCGC 58.621 50.000 7.57 1.37 35.77 5.68
357 372 0.663153 GCATCAAGAATGGTACCGCC 59.337 55.000 7.57 0.00 35.77 6.13
358 373 1.308998 CATCAAGAATGGTACCGCCC 58.691 55.000 7.57 0.00 36.04 6.13
360 375 0.988832 TCAAGAATGGTACCGCCCTT 59.011 50.000 7.57 7.01 36.04 3.95
361 376 1.353022 TCAAGAATGGTACCGCCCTTT 59.647 47.619 7.57 0.00 36.04 3.11
362 377 2.167662 CAAGAATGGTACCGCCCTTTT 58.832 47.619 7.57 0.00 36.04 2.27
363 378 2.124277 AGAATGGTACCGCCCTTTTC 57.876 50.000 7.57 3.78 36.04 2.29
364 379 0.730840 GAATGGTACCGCCCTTTTCG 59.269 55.000 7.57 0.00 36.04 3.46
365 380 0.037160 AATGGTACCGCCCTTTTCGT 59.963 50.000 7.57 0.00 36.04 3.85
366 381 0.675522 ATGGTACCGCCCTTTTCGTG 60.676 55.000 7.57 0.00 36.04 4.35
367 382 1.301953 GGTACCGCCCTTTTCGTGT 60.302 57.895 0.00 0.00 0.00 4.49
368 383 0.037419 GGTACCGCCCTTTTCGTGTA 60.037 55.000 0.00 0.00 0.00 2.90
369 384 1.405933 GGTACCGCCCTTTTCGTGTAT 60.406 52.381 0.00 0.00 0.00 2.29
370 385 1.662122 GTACCGCCCTTTTCGTGTATG 59.338 52.381 0.00 0.00 0.00 2.39
371 386 0.035739 ACCGCCCTTTTCGTGTATGT 59.964 50.000 0.00 0.00 0.00 2.29
372 387 1.275856 ACCGCCCTTTTCGTGTATGTA 59.724 47.619 0.00 0.00 0.00 2.29
373 388 1.931172 CCGCCCTTTTCGTGTATGTAG 59.069 52.381 0.00 0.00 0.00 2.74
374 389 2.613691 CGCCCTTTTCGTGTATGTAGT 58.386 47.619 0.00 0.00 0.00 2.73
375 390 3.429272 CCGCCCTTTTCGTGTATGTAGTA 60.429 47.826 0.00 0.00 0.00 1.82
376 391 4.365723 CGCCCTTTTCGTGTATGTAGTAT 58.634 43.478 0.00 0.00 0.00 2.12
377 392 4.208460 CGCCCTTTTCGTGTATGTAGTATG 59.792 45.833 0.00 0.00 0.00 2.39
378 393 5.114081 GCCCTTTTCGTGTATGTAGTATGT 58.886 41.667 0.00 0.00 0.00 2.29
379 394 5.583457 GCCCTTTTCGTGTATGTAGTATGTT 59.417 40.000 0.00 0.00 0.00 2.71
380 395 6.456449 GCCCTTTTCGTGTATGTAGTATGTTG 60.456 42.308 0.00 0.00 0.00 3.33
381 396 6.592607 CCCTTTTCGTGTATGTAGTATGTTGT 59.407 38.462 0.00 0.00 0.00 3.32
401 416 2.515523 GATGCACTGCCGCTGGAT 60.516 61.111 0.00 0.00 0.00 3.41
418 433 7.280876 GCCGCTGGATATTTATAAAGATCATGA 59.719 37.037 26.11 13.41 38.13 3.07
419 434 9.166173 CCGCTGGATATTTATAAAGATCATGAA 57.834 33.333 26.11 12.75 38.13 2.57
439 454 3.367743 CATGCAGTGCAAGGCGGT 61.368 61.111 23.90 0.36 43.62 5.68
454 473 1.933853 GGCGGTCTACATTTACTGCTG 59.066 52.381 6.27 0.00 45.41 4.41
458 477 2.618053 GTCTACATTTACTGCTGCCGT 58.382 47.619 1.58 1.58 0.00 5.68
567 588 1.040339 TGCACCCACCCAGTCAAAAC 61.040 55.000 0.00 0.00 0.00 2.43
589 610 1.812507 GCTAACCGCTAACCACCCG 60.813 63.158 0.00 0.00 35.14 5.28
671 692 1.516892 CATGGCGGTGAAAATGGGG 59.483 57.895 0.00 0.00 0.00 4.96
672 693 0.969917 CATGGCGGTGAAAATGGGGA 60.970 55.000 0.00 0.00 0.00 4.81
673 694 0.970427 ATGGCGGTGAAAATGGGGAC 60.970 55.000 0.00 0.00 0.00 4.46
735 781 2.447572 TGGTGTCCTGGCACTCCA 60.448 61.111 16.88 14.78 40.85 3.86
746 792 1.293498 GCACTCCACACTGTCGGAT 59.707 57.895 0.00 0.00 0.00 4.18
748 794 0.603065 CACTCCACACTGTCGGATGA 59.397 55.000 0.00 0.00 0.00 2.92
749 795 1.205655 CACTCCACACTGTCGGATGAT 59.794 52.381 0.00 0.00 0.00 2.45
751 797 0.824109 TCCACACTGTCGGATGATCC 59.176 55.000 0.08 0.08 0.00 3.36
787 852 3.861797 CCGCCACCCGCCTTATCT 61.862 66.667 0.00 0.00 35.03 1.98
800 889 1.735926 CTTATCTTCCCCCTCCCTCC 58.264 60.000 0.00 0.00 0.00 4.30
902 994 2.205074 GACACACATCCATCCATCGAC 58.795 52.381 0.00 0.00 0.00 4.20
930 1041 3.229156 CTGCCAACCCCGTCGTGTA 62.229 63.158 0.00 0.00 0.00 2.90
938 1049 1.660560 CCCCGTCGTGTAGGTAGGTG 61.661 65.000 0.00 0.00 0.00 4.00
939 1050 0.677731 CCCGTCGTGTAGGTAGGTGA 60.678 60.000 0.00 0.00 0.00 4.02
940 1051 0.449388 CCGTCGTGTAGGTAGGTGAC 59.551 60.000 0.00 0.00 0.00 3.67
944 1066 0.172803 CGTGTAGGTAGGTGACTGGC 59.827 60.000 0.00 0.00 43.88 4.85
949 1071 4.468689 GTAGGTGACTGGCCGGCC 62.469 72.222 39.40 39.40 43.88 6.13
963 1085 3.755628 GGCCGCGGTAGTGAGTGA 61.756 66.667 28.70 0.00 0.00 3.41
966 1088 1.153823 CCGCGGTAGTGAGTGAAGG 60.154 63.158 19.50 0.00 0.00 3.46
967 1089 1.805945 CGCGGTAGTGAGTGAAGGC 60.806 63.158 0.00 0.00 0.00 4.35
968 1090 1.592223 GCGGTAGTGAGTGAAGGCT 59.408 57.895 0.00 0.00 0.00 4.58
969 1091 0.037232 GCGGTAGTGAGTGAAGGCTT 60.037 55.000 0.00 0.00 0.00 4.35
970 1092 1.997669 CGGTAGTGAGTGAAGGCTTC 58.002 55.000 20.27 20.27 0.00 3.86
971 1093 1.546476 CGGTAGTGAGTGAAGGCTTCT 59.454 52.381 26.26 8.76 0.00 2.85
973 1095 2.300437 GGTAGTGAGTGAAGGCTTCTGT 59.700 50.000 26.26 14.31 0.00 3.41
996 1131 2.508887 GCTCTGCTCTGTGAGGCG 60.509 66.667 0.00 0.00 0.00 5.52
1237 1374 4.324991 GTCACCACCGACACCCCC 62.325 72.222 0.00 0.00 35.88 5.40
1282 1422 2.030628 CCGGCGAACTAACACCATTTTT 60.031 45.455 9.30 0.00 0.00 1.94
1325 1474 5.259632 CAGGATCTCTCCAACAAAATCCTT 58.740 41.667 0.00 0.00 44.79 3.36
1373 1548 1.548357 CCATCCCATCCCGCTAGAGG 61.548 65.000 5.36 5.36 0.00 3.69
1376 1551 0.759436 TCCCATCCCGCTAGAGGTTC 60.759 60.000 11.91 0.00 0.00 3.62
1377 1552 0.760945 CCCATCCCGCTAGAGGTTCT 60.761 60.000 11.91 0.00 0.00 3.01
1379 1554 1.202580 CCATCCCGCTAGAGGTTCTTG 60.203 57.143 11.91 3.47 0.00 3.02
1381 1556 1.153349 CCCGCTAGAGGTTCTTGGC 60.153 63.158 11.91 0.00 0.00 4.52
1384 1571 2.167861 GCTAGAGGTTCTTGGCGCG 61.168 63.158 0.00 0.00 0.00 6.86
1413 1600 2.746277 ACCGATCCTTGCCAACGC 60.746 61.111 0.00 0.00 0.00 4.84
1414 1601 3.864686 CCGATCCTTGCCAACGCG 61.865 66.667 3.53 3.53 38.08 6.01
1432 1620 1.083242 CGGCGCAATTCCCATTTTGG 61.083 55.000 10.83 0.00 37.25 3.28
1648 1839 1.584724 TCCACCCTCAATCTTCCCTC 58.415 55.000 0.00 0.00 0.00 4.30
1652 1854 1.985895 ACCCTCAATCTTCCCTCGTTT 59.014 47.619 0.00 0.00 0.00 3.60
1653 1855 2.027100 ACCCTCAATCTTCCCTCGTTTC 60.027 50.000 0.00 0.00 0.00 2.78
1665 1867 4.009675 TCCCTCGTTTCTTCCATGATTTG 58.990 43.478 0.00 0.00 0.00 2.32
1666 1868 4.009675 CCCTCGTTTCTTCCATGATTTGA 58.990 43.478 0.00 0.00 0.00 2.69
1701 1903 5.104652 TCAGAAGATCATCACATCACATGGT 60.105 40.000 0.10 0.00 33.60 3.55
1705 1909 0.659427 CATCACATCACATGGTCCGC 59.341 55.000 0.00 0.00 33.60 5.54
1857 2061 0.815095 CGGCAAGGGGTACAAAATCC 59.185 55.000 0.00 0.00 0.00 3.01
1862 2066 3.707316 CAAGGGGTACAAAATCCATGGA 58.293 45.455 18.88 18.88 0.00 3.41
1894 2098 0.328258 ACGTCCTCCATTTCCCTTGG 59.672 55.000 0.00 0.00 35.45 3.61
1918 2122 2.037772 ACTGAAGCGAGAAACTCCACAT 59.962 45.455 0.00 0.00 0.00 3.21
1919 2123 2.414481 CTGAAGCGAGAAACTCCACATG 59.586 50.000 0.00 0.00 0.00 3.21
1935 2151 2.954318 CACATGGAGATGGGGTTTCATC 59.046 50.000 0.00 0.00 42.73 2.92
1936 2152 2.091665 ACATGGAGATGGGGTTTCATCC 60.092 50.000 0.00 0.00 43.25 3.51
1937 2153 1.985622 TGGAGATGGGGTTTCATCCT 58.014 50.000 0.00 0.00 43.25 3.24
1946 2162 2.094026 GGGGTTTCATCCTGAAATGTGC 60.094 50.000 5.67 0.00 46.55 4.57
1948 2164 3.119352 GGGTTTCATCCTGAAATGTGCTC 60.119 47.826 5.67 0.00 46.55 4.26
1949 2165 3.760684 GGTTTCATCCTGAAATGTGCTCT 59.239 43.478 5.67 0.00 46.55 4.09
1950 2166 4.142513 GGTTTCATCCTGAAATGTGCTCTC 60.143 45.833 5.67 0.00 46.55 3.20
1951 2167 4.564782 TTCATCCTGAAATGTGCTCTCT 57.435 40.909 0.00 0.00 32.71 3.10
1952 2168 4.134379 TCATCCTGAAATGTGCTCTCTC 57.866 45.455 0.00 0.00 0.00 3.20
1958 2174 2.909006 TGAAATGTGCTCTCTCCTCCTT 59.091 45.455 0.00 0.00 0.00 3.36
1980 2196 2.188994 GGAATGAGCTCAGCGGCT 59.811 61.111 22.96 1.08 46.11 5.52
2053 2269 0.387367 CTCAAGACGACGGTGGACAG 60.387 60.000 0.00 0.00 0.00 3.51
2150 2366 1.675310 CATCGCCAAGACCAAGCCA 60.675 57.895 0.00 0.00 0.00 4.75
2160 2376 1.364626 GACCAAGCCAGACATGCTCG 61.365 60.000 0.00 0.00 38.34 5.03
2205 2421 0.541863 CCTAGGGGCAGGTGTGTAAG 59.458 60.000 0.00 0.00 0.00 2.34
2206 2422 0.107654 CTAGGGGCAGGTGTGTAAGC 60.108 60.000 0.00 0.00 0.00 3.09
2207 2423 0.546747 TAGGGGCAGGTGTGTAAGCT 60.547 55.000 0.00 0.00 36.97 3.74
2208 2424 1.074951 GGGGCAGGTGTGTAAGCTT 59.925 57.895 3.48 3.48 33.14 3.74
2210 2426 1.450025 GGGCAGGTGTGTAAGCTTAC 58.550 55.000 26.50 26.50 33.14 2.34
2213 2460 1.076332 CAGGTGTGTAAGCTTACGCC 58.924 55.000 35.33 29.79 45.50 5.68
2221 2468 4.760715 TGTGTAAGCTTACGCCCATTTTAA 59.239 37.500 35.33 18.92 42.04 1.52
2228 2476 6.697395 AGCTTACGCCCATTTTAAAGAATTT 58.303 32.000 0.00 0.00 38.50 1.82
2233 2481 6.754193 ACGCCCATTTTAAAGAATTTTCAGA 58.246 32.000 0.00 0.00 40.09 3.27
2236 2484 7.170658 CGCCCATTTTAAAGAATTTTCAGACAA 59.829 33.333 0.00 0.00 40.09 3.18
2251 2499 9.696917 ATTTTCAGACAAAAAGATACATGAACC 57.303 29.630 0.00 0.00 32.04 3.62
2252 2500 6.480524 TCAGACAAAAAGATACATGAACCG 57.519 37.500 0.00 0.00 0.00 4.44
2253 2501 5.411361 TCAGACAAAAAGATACATGAACCGG 59.589 40.000 0.00 0.00 0.00 5.28
2254 2502 5.411361 CAGACAAAAAGATACATGAACCGGA 59.589 40.000 9.46 0.00 0.00 5.14
2255 2503 5.411669 AGACAAAAAGATACATGAACCGGAC 59.588 40.000 9.46 1.77 0.00 4.79
2256 2504 4.457949 ACAAAAAGATACATGAACCGGACC 59.542 41.667 9.46 0.00 0.00 4.46
2269 2529 0.249741 CCGGACCTGAACTCGTTTGT 60.250 55.000 0.00 0.00 0.00 2.83
2270 2530 0.859232 CGGACCTGAACTCGTTTGTG 59.141 55.000 0.00 0.00 0.00 3.33
2322 2588 3.069300 ACATCTGATTGACAGGATCCTCG 59.931 47.826 12.69 10.40 45.76 4.63
2456 2722 0.250901 GTGGGCATCACCTTGTCACT 60.251 55.000 0.00 0.00 40.39 3.41
2459 2725 1.340405 GGGCATCACCTTGTCACTGAT 60.340 52.381 0.00 0.00 39.10 2.90
2494 2760 3.645687 AGCTTCTGGTAAGATGGGAGATC 59.354 47.826 0.00 0.00 30.72 2.75
2504 2770 4.210611 AGATGGGAGATCCTTGAGATGA 57.789 45.455 0.00 0.00 34.42 2.92
2514 2780 7.989741 GGAGATCCTTGAGATGAAAATTCAGTA 59.010 37.037 1.98 0.00 41.08 2.74
2519 2785 9.823647 TCCTTGAGATGAAAATTCAGTAGATAC 57.176 33.333 1.98 0.00 41.08 2.24
2534 2800 8.815565 TCAGTAGATACTCTTGATGAAGTTCT 57.184 34.615 4.17 0.00 33.46 3.01
2556 2827 6.137559 TCTTACTTATGGGGTTTGTGGTTTT 58.862 36.000 0.00 0.00 0.00 2.43
2611 2882 1.617322 TCGACACCAAGAGCTACTGT 58.383 50.000 0.00 0.00 0.00 3.55
2704 2975 7.291566 ACTACAGGTAAGATCAGTATGCTACT 58.708 38.462 0.00 0.00 40.28 2.57
2706 2977 6.810911 ACAGGTAAGATCAGTATGCTACTTG 58.189 40.000 0.00 0.43 36.76 3.16
2708 2979 7.288852 ACAGGTAAGATCAGTATGCTACTTGAT 59.711 37.037 0.00 0.00 36.76 2.57
2709 2980 7.598118 CAGGTAAGATCAGTATGCTACTTGATG 59.402 40.741 0.00 0.00 36.76 3.07
2710 2981 7.507277 AGGTAAGATCAGTATGCTACTTGATGA 59.493 37.037 0.00 0.00 36.76 2.92
2711 2982 8.144478 GGTAAGATCAGTATGCTACTTGATGAA 58.856 37.037 0.00 0.00 36.76 2.57
2712 2983 9.534565 GTAAGATCAGTATGCTACTTGATGAAA 57.465 33.333 0.00 0.00 36.76 2.69
2714 2985 9.624373 AAGATCAGTATGCTACTTGATGAAATT 57.376 29.630 0.00 0.00 36.76 1.82
2715 2986 9.624373 AGATCAGTATGCTACTTGATGAAATTT 57.376 29.630 0.00 0.00 36.76 1.82
2716 2987 9.661187 GATCAGTATGCTACTTGATGAAATTTG 57.339 33.333 0.00 0.00 36.76 2.32
2717 2988 7.475015 TCAGTATGCTACTTGATGAAATTTGC 58.525 34.615 0.00 0.00 36.76 3.68
2718 2989 7.121020 TCAGTATGCTACTTGATGAAATTTGCA 59.879 33.333 0.00 0.00 36.76 4.08
2719 2990 7.756272 CAGTATGCTACTTGATGAAATTTGCAA 59.244 33.333 0.00 0.00 36.76 4.08
2762 3052 2.301346 AGGAACTTGCCTGAAAGTGTG 58.699 47.619 0.00 0.00 40.28 3.82
2770 3061 2.878406 TGCCTGAAAGTGTGTAAGCTTC 59.122 45.455 0.00 0.00 0.00 3.86
2771 3062 2.096218 GCCTGAAAGTGTGTAAGCTTCG 60.096 50.000 0.00 0.00 0.00 3.79
2787 3078 3.686726 AGCTTCGACTTCCATGACATTTC 59.313 43.478 0.00 0.00 0.00 2.17
2788 3079 3.181506 GCTTCGACTTCCATGACATTTCC 60.182 47.826 0.00 0.00 0.00 3.13
2794 3085 4.593956 ACTTCCATGACATTTCCTCCTTC 58.406 43.478 0.00 0.00 0.00 3.46
2796 3087 3.192944 TCCATGACATTTCCTCCTTCCT 58.807 45.455 0.00 0.00 0.00 3.36
2797 3088 3.054139 TCCATGACATTTCCTCCTTCCTG 60.054 47.826 0.00 0.00 0.00 3.86
2865 3157 3.075148 GGTTCTAGAAGCCAAGTTCACC 58.925 50.000 21.55 5.37 33.03 4.02
2868 3160 0.323629 TAGAAGCCAAGTTCACCGGG 59.676 55.000 6.32 0.00 0.00 5.73
2878 3170 0.250553 GTTCACCGGGACCAACATGA 60.251 55.000 6.32 0.00 0.00 3.07
2934 3226 5.366477 TGTAAGCAATCCAGATGATCCTACA 59.634 40.000 0.00 0.00 31.61 2.74
2935 3227 4.348863 AGCAATCCAGATGATCCTACAC 57.651 45.455 0.00 0.00 31.61 2.90
2936 3228 3.713248 AGCAATCCAGATGATCCTACACA 59.287 43.478 0.00 0.00 31.61 3.72
2937 3229 4.350225 AGCAATCCAGATGATCCTACACAT 59.650 41.667 0.00 0.00 31.61 3.21
2938 3230 5.068636 GCAATCCAGATGATCCTACACATT 58.931 41.667 0.00 0.00 31.61 2.71
2939 3231 5.533903 GCAATCCAGATGATCCTACACATTT 59.466 40.000 0.00 0.00 31.61 2.32
2951 3246 5.380900 TCCTACACATTTTCATCACCACAA 58.619 37.500 0.00 0.00 0.00 3.33
2959 3254 5.588958 TTTTCATCACCACAACAACATCA 57.411 34.783 0.00 0.00 0.00 3.07
2974 3269 5.802465 ACAACATCAACAGTCTCATCATCT 58.198 37.500 0.00 0.00 0.00 2.90
2982 3277 4.865905 ACAGTCTCATCATCTACTGACCT 58.134 43.478 8.21 0.00 41.47 3.85
2984 3279 5.359576 ACAGTCTCATCATCTACTGACCTTC 59.640 44.000 8.21 0.00 41.47 3.46
2985 3280 5.593909 CAGTCTCATCATCTACTGACCTTCT 59.406 44.000 0.00 0.00 41.47 2.85
2986 3281 5.827797 AGTCTCATCATCTACTGACCTTCTC 59.172 44.000 0.00 0.00 36.48 2.87
2988 3283 4.871822 TCATCATCTACTGACCTTCTCCA 58.128 43.478 0.00 0.00 36.48 3.86
2990 3285 5.303845 TCATCATCTACTGACCTTCTCCATG 59.696 44.000 0.00 0.00 36.48 3.66
2991 3286 4.614475 TCATCTACTGACCTTCTCCATGT 58.386 43.478 0.00 0.00 0.00 3.21
3039 3336 1.642037 CTGCTCATCAACCTGCACGG 61.642 60.000 1.16 1.16 39.35 4.94
3070 3367 2.111043 CACGTCAAGGTGGCAGGT 59.889 61.111 0.00 0.00 34.27 4.00
3071 3368 1.525995 CACGTCAAGGTGGCAGGTT 60.526 57.895 0.00 0.00 34.27 3.50
3072 3369 1.227853 ACGTCAAGGTGGCAGGTTC 60.228 57.895 0.00 0.00 0.00 3.62
3073 3370 1.227823 CGTCAAGGTGGCAGGTTCA 60.228 57.895 0.00 0.00 0.00 3.18
3074 3371 1.230635 CGTCAAGGTGGCAGGTTCAG 61.231 60.000 0.00 0.00 0.00 3.02
3075 3372 0.890996 GTCAAGGTGGCAGGTTCAGG 60.891 60.000 0.00 0.00 0.00 3.86
3076 3373 2.116125 AAGGTGGCAGGTTCAGGC 59.884 61.111 0.00 0.00 0.00 4.85
3077 3374 3.850098 AAGGTGGCAGGTTCAGGCG 62.850 63.158 0.00 0.00 0.00 5.52
3125 3428 2.356667 GGGGGAGGTTTGCTCAGG 59.643 66.667 0.00 0.00 0.00 3.86
3128 3431 2.347490 GGAGGTTTGCTCAGGCGA 59.653 61.111 0.00 0.00 42.25 5.54
3133 3436 3.621805 TTTGCTCAGGCGACCGGA 61.622 61.111 9.46 0.00 42.25 5.14
3163 3466 1.982938 GGAGTACCACCTCACGCCT 60.983 63.158 0.00 0.00 32.46 5.52
3320 3623 3.047280 TGTTCGTCCACATGCCGC 61.047 61.111 0.00 0.00 0.00 6.53
3364 3673 3.304726 GCTAGAGGTTTTGGTGTTCTTGC 60.305 47.826 0.00 0.00 31.66 4.01
3375 3684 3.270877 GGTGTTCTTGCTGGTATAGGTG 58.729 50.000 0.00 0.00 0.00 4.00
3381 3690 1.200519 TGCTGGTATAGGTGGTGGTC 58.799 55.000 0.00 0.00 0.00 4.02
3413 3723 1.952296 CTTGCTAAGCATGTCCATCCC 59.048 52.381 0.00 0.00 38.76 3.85
3415 3725 1.284491 TGCTAAGCATGTCCATCCCAA 59.716 47.619 0.00 0.00 31.71 4.12
3463 3779 4.826733 TGTGTGGCTTTGTGTGATTAGATT 59.173 37.500 0.00 0.00 0.00 2.40
3464 3780 5.156355 GTGTGGCTTTGTGTGATTAGATTG 58.844 41.667 0.00 0.00 0.00 2.67
3465 3781 4.826733 TGTGGCTTTGTGTGATTAGATTGT 59.173 37.500 0.00 0.00 0.00 2.71
3467 3783 6.488344 TGTGGCTTTGTGTGATTAGATTGTAA 59.512 34.615 0.00 0.00 0.00 2.41
3468 3784 7.023575 GTGGCTTTGTGTGATTAGATTGTAAG 58.976 38.462 0.00 0.00 0.00 2.34
3471 3787 7.414540 GGCTTTGTGTGATTAGATTGTAAGAGG 60.415 40.741 0.00 0.00 0.00 3.69
3472 3788 7.334421 GCTTTGTGTGATTAGATTGTAAGAGGA 59.666 37.037 0.00 0.00 0.00 3.71
3475 3791 8.078060 TGTGTGATTAGATTGTAAGAGGATGA 57.922 34.615 0.00 0.00 0.00 2.92
3488 3804 4.242336 AGAGGATGAAGGGGAAATTGAC 57.758 45.455 0.00 0.00 0.00 3.18
3503 3819 7.084486 GGGAAATTGACATAGTGAAACAAGAC 58.916 38.462 0.00 0.00 41.43 3.01
3535 3852 6.151312 GGAATAACTCTTTCCTGGTTTCTTCC 59.849 42.308 0.00 0.00 39.67 3.46
3544 3861 2.572290 CTGGTTTCTTCCGAGTGGTTT 58.428 47.619 0.00 0.00 36.30 3.27
3575 3892 4.582701 TGTAATGGTGGCAGACAAAAAG 57.417 40.909 0.00 0.00 0.00 2.27
3608 3926 0.252239 TACCTTCAGCCTCAGAGCCA 60.252 55.000 0.00 0.00 0.00 4.75
3614 3932 0.322277 CAGCCTCAGAGCCATGTTGT 60.322 55.000 0.00 0.00 0.00 3.32
3615 3933 0.403271 AGCCTCAGAGCCATGTTGTT 59.597 50.000 0.00 0.00 0.00 2.83
3627 3945 3.663025 CCATGTTGTTTTGGATGGGAAC 58.337 45.455 0.00 0.00 34.81 3.62
3628 3946 6.549763 GCCATGTTGTTTTGGATGGGAACA 62.550 45.833 0.00 0.00 36.61 3.18
3663 6393 6.809630 AGTAGGAATGAAGCTTTTCTGAAC 57.190 37.500 0.00 2.24 0.00 3.18
3672 6402 1.956477 GCTTTTCTGAACCAAGAGGCA 59.044 47.619 6.12 0.00 39.06 4.75
3674 6404 3.006217 GCTTTTCTGAACCAAGAGGCAAT 59.994 43.478 6.12 0.00 39.06 3.56
3698 6436 4.457466 GGAAACCAACTACTTCACAGGAA 58.543 43.478 0.00 0.00 0.00 3.36
3746 6484 3.324268 TGCAGAAATTTCCAGGCATTTCA 59.676 39.130 19.75 3.85 40.48 2.69
3767 6507 6.358974 TCACACAAGATCAGAACATTCCTA 57.641 37.500 0.00 0.00 0.00 2.94
3773 6513 7.551974 CACAAGATCAGAACATTCCTACATTCT 59.448 37.037 0.00 0.00 31.53 2.40
3781 6521 7.044798 AGAACATTCCTACATTCTGAACTAGC 58.955 38.462 0.00 0.00 30.26 3.42
3793 6533 8.629158 ACATTCTGAACTAGCACTTCTATCTAG 58.371 37.037 0.00 0.00 36.70 2.43
3839 6582 1.151668 GTCACAGGTGCACACAGATC 58.848 55.000 20.43 0.00 0.00 2.75
3861 6604 9.762933 AGATCAGCTGAATAAGAATAAAGACTC 57.237 33.333 22.50 7.59 0.00 3.36
3866 6610 6.203723 GCTGAATAAGAATAAAGACTCGGCAT 59.796 38.462 0.00 0.00 34.73 4.40
3870 6614 5.615925 AAGAATAAAGACTCGGCATAGGT 57.384 39.130 0.00 0.00 0.00 3.08
3901 6645 6.622833 TGCAACAATCGTCATGATATCATT 57.377 33.333 15.74 0.00 35.84 2.57
3934 6678 5.696260 TCAAACATTATCGTCGTCATCAC 57.304 39.130 0.00 0.00 0.00 3.06
4185 6946 2.099263 CGTGATGGTGTCCGTAGATTCT 59.901 50.000 0.00 0.00 0.00 2.40
4278 7046 3.148279 AGGGACTCGACGGCCATC 61.148 66.667 2.24 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.432300 GCCCGGGCTAGCAGAACTA 61.432 63.158 38.76 0.00 38.26 2.24
5 6 3.787001 GCCCGGGCTAGCAGAACT 61.787 66.667 38.76 0.00 38.26 3.01
6 7 4.858680 GGCCCGGGCTAGCAGAAC 62.859 72.222 42.70 21.56 41.60 3.01
9 10 3.721370 AAATGGCCCGGGCTAGCAG 62.721 63.158 42.70 9.78 41.60 4.24
10 11 1.927569 TAAAATGGCCCGGGCTAGCA 61.928 55.000 42.70 32.47 41.60 3.49
11 12 1.152839 TAAAATGGCCCGGGCTAGC 60.153 57.895 42.70 27.87 41.60 3.42
12 13 0.537371 CCTAAAATGGCCCGGGCTAG 60.537 60.000 42.70 32.75 41.60 3.42
13 14 0.989212 TCCTAAAATGGCCCGGGCTA 60.989 55.000 42.70 39.29 41.60 3.93
17 18 0.827507 CCCATCCTAAAATGGCCCGG 60.828 60.000 0.00 0.00 44.17 5.73
40 45 2.630889 TGGTCCTCCTCTTCATCTGT 57.369 50.000 0.00 0.00 34.23 3.41
45 50 2.034878 CATCGATGGTCCTCCTCTTCA 58.965 52.381 17.96 0.00 34.23 3.02
56 61 2.125147 CCACGGTGCATCGATGGT 60.125 61.111 28.98 12.83 31.58 3.55
76 81 2.918345 TACACCGACGAACCCCACG 61.918 63.158 0.00 0.00 0.00 4.94
106 114 4.225942 AGGTAGATACATACATGCATGGGG 59.774 45.833 29.41 19.68 0.00 4.96
107 115 5.188555 AGAGGTAGATACATACATGCATGGG 59.811 44.000 29.41 20.01 0.00 4.00
108 116 6.154192 AGAGAGGTAGATACATACATGCATGG 59.846 42.308 29.41 14.96 0.00 3.66
114 122 4.632251 CGCGAGAGAGGTAGATACATACAT 59.368 45.833 0.00 0.00 0.00 2.29
116 124 3.995705 ACGCGAGAGAGGTAGATACATAC 59.004 47.826 15.93 0.00 34.13 2.39
117 125 4.244066 GACGCGAGAGAGGTAGATACATA 58.756 47.826 15.93 0.00 34.13 2.29
118 126 3.068560 GACGCGAGAGAGGTAGATACAT 58.931 50.000 15.93 0.00 34.13 2.29
119 127 2.481854 GACGCGAGAGAGGTAGATACA 58.518 52.381 15.93 0.00 34.13 2.29
120 128 1.456544 CGACGCGAGAGAGGTAGATAC 59.543 57.143 15.93 0.00 34.13 2.24
121 129 1.068281 ACGACGCGAGAGAGGTAGATA 59.932 52.381 15.93 0.00 34.13 1.98
123 131 0.457443 TACGACGCGAGAGAGGTAGA 59.543 55.000 15.93 0.00 34.13 2.59
147 159 1.227409 TGCCGTCGTTCAAAGCTGA 60.227 52.632 0.00 0.00 0.00 4.26
149 161 0.032952 TAGTGCCGTCGTTCAAAGCT 59.967 50.000 0.00 0.00 0.00 3.74
164 176 5.979288 AGTTACTACCACTTGGAGTAGTG 57.021 43.478 11.96 0.00 46.57 2.74
166 178 6.837471 AGAAGTTACTACCACTTGGAGTAG 57.163 41.667 1.14 0.00 41.44 2.57
170 182 6.982160 TGTAAGAAGTTACTACCACTTGGA 57.018 37.500 1.14 0.00 39.55 3.53
171 183 7.384387 GTCTTGTAAGAAGTTACTACCACTTGG 59.616 40.741 0.00 0.00 39.55 3.61
172 184 7.114529 CGTCTTGTAAGAAGTTACTACCACTTG 59.885 40.741 0.00 0.00 39.55 3.16
173 185 7.144000 CGTCTTGTAAGAAGTTACTACCACTT 58.856 38.462 0.00 0.00 39.55 3.16
174 186 6.264067 ACGTCTTGTAAGAAGTTACTACCACT 59.736 38.462 7.27 0.00 43.59 4.00
175 187 6.442112 ACGTCTTGTAAGAAGTTACTACCAC 58.558 40.000 7.27 0.00 43.59 4.16
176 188 6.639632 ACGTCTTGTAAGAAGTTACTACCA 57.360 37.500 7.27 0.00 43.59 3.25
177 189 9.709600 GTATACGTCTTGTAAGAAGTTACTACC 57.290 37.037 16.18 0.13 43.59 3.18
178 190 9.709600 GGTATACGTCTTGTAAGAAGTTACTAC 57.290 37.037 16.18 14.30 43.59 2.73
180 192 7.467623 CGGTATACGTCTTGTAAGAAGTTACT 58.532 38.462 16.18 6.84 43.59 2.24
215 230 3.719924 TCCGTGTCAAATTGTAAGACGT 58.280 40.909 0.00 0.00 35.09 4.34
223 238 1.806542 CACTCCCTCCGTGTCAAATTG 59.193 52.381 0.00 0.00 0.00 2.32
227 242 0.391597 GAACACTCCCTCCGTGTCAA 59.608 55.000 0.00 0.00 44.25 3.18
231 246 3.466881 TGGAACACTCCCTCCGTG 58.533 61.111 0.00 0.00 41.64 4.94
245 260 5.220970 GGAACAAGAAGAAAAACACGATGGA 60.221 40.000 0.00 0.00 0.00 3.41
246 261 4.976116 GGAACAAGAAGAAAAACACGATGG 59.024 41.667 0.00 0.00 0.00 3.51
256 271 2.680841 CACACGGTGGAACAAGAAGAAA 59.319 45.455 13.48 0.00 44.16 2.52
269 284 4.116961 ACGGAATATTATGACACACGGTG 58.883 43.478 6.58 6.58 39.75 4.94
270 285 4.365723 GACGGAATATTATGACACACGGT 58.634 43.478 0.00 0.00 0.00 4.83
272 287 4.039703 ACGACGGAATATTATGACACACG 58.960 43.478 0.00 0.00 0.00 4.49
273 288 4.802039 ACACGACGGAATATTATGACACAC 59.198 41.667 0.00 0.00 0.00 3.82
280 295 4.874970 GTGGGTACACGACGGAATATTAT 58.125 43.478 0.00 0.00 37.94 1.28
304 319 2.096909 CGATTTCGGACGGCATGATTAC 60.097 50.000 0.00 0.00 35.37 1.89
313 328 2.304516 ATTTGCGCGATTTCGGACGG 62.305 55.000 12.10 0.00 40.23 4.79
328 343 6.978343 ACCATTCTTGATGCAAATCATTTG 57.022 33.333 5.68 5.68 43.44 2.32
346 361 0.037160 ACGAAAAGGGCGGTACCATT 59.963 50.000 13.54 0.00 46.80 3.16
348 363 1.301874 CACGAAAAGGGCGGTACCA 60.302 57.895 13.54 0.00 42.05 3.25
351 366 1.275856 ACATACACGAAAAGGGCGGTA 59.724 47.619 0.00 0.00 0.00 4.02
355 370 5.114081 ACATACTACATACACGAAAAGGGC 58.886 41.667 0.00 0.00 0.00 5.19
356 371 6.592607 ACAACATACTACATACACGAAAAGGG 59.407 38.462 0.00 0.00 0.00 3.95
357 372 7.591006 ACAACATACTACATACACGAAAAGG 57.409 36.000 0.00 0.00 0.00 3.11
361 376 9.511144 CATCTTACAACATACTACATACACGAA 57.489 33.333 0.00 0.00 0.00 3.85
362 377 7.646526 GCATCTTACAACATACTACATACACGA 59.353 37.037 0.00 0.00 0.00 4.35
363 378 7.434013 TGCATCTTACAACATACTACATACACG 59.566 37.037 0.00 0.00 0.00 4.49
364 379 8.540492 GTGCATCTTACAACATACTACATACAC 58.460 37.037 0.00 0.00 0.00 2.90
365 380 8.474831 AGTGCATCTTACAACATACTACATACA 58.525 33.333 0.00 0.00 0.00 2.29
366 381 8.755941 CAGTGCATCTTACAACATACTACATAC 58.244 37.037 0.00 0.00 0.00 2.39
367 382 7.438160 GCAGTGCATCTTACAACATACTACATA 59.562 37.037 11.09 0.00 0.00 2.29
368 383 6.258727 GCAGTGCATCTTACAACATACTACAT 59.741 38.462 11.09 0.00 0.00 2.29
369 384 5.580691 GCAGTGCATCTTACAACATACTACA 59.419 40.000 11.09 0.00 0.00 2.74
370 385 5.006746 GGCAGTGCATCTTACAACATACTAC 59.993 44.000 18.61 0.00 0.00 2.73
371 386 5.116180 GGCAGTGCATCTTACAACATACTA 58.884 41.667 18.61 0.00 0.00 1.82
372 387 3.941483 GGCAGTGCATCTTACAACATACT 59.059 43.478 18.61 0.00 0.00 2.12
373 388 3.242413 CGGCAGTGCATCTTACAACATAC 60.242 47.826 18.61 0.00 0.00 2.39
374 389 2.935849 CGGCAGTGCATCTTACAACATA 59.064 45.455 18.61 0.00 0.00 2.29
375 390 1.739466 CGGCAGTGCATCTTACAACAT 59.261 47.619 18.61 0.00 0.00 2.71
376 391 1.155889 CGGCAGTGCATCTTACAACA 58.844 50.000 18.61 0.00 0.00 3.33
377 392 0.179189 GCGGCAGTGCATCTTACAAC 60.179 55.000 18.61 0.00 34.15 3.32
378 393 0.321564 AGCGGCAGTGCATCTTACAA 60.322 50.000 18.61 0.00 37.31 2.41
379 394 1.020861 CAGCGGCAGTGCATCTTACA 61.021 55.000 18.61 0.00 37.31 2.41
380 395 1.709147 CCAGCGGCAGTGCATCTTAC 61.709 60.000 18.61 0.00 37.31 2.34
381 396 1.450134 CCAGCGGCAGTGCATCTTA 60.450 57.895 18.61 0.00 37.31 2.10
436 451 1.933853 GGCAGCAGTAAATGTAGACCG 59.066 52.381 0.00 0.00 0.00 4.79
439 454 3.000041 CAACGGCAGCAGTAAATGTAGA 59.000 45.455 0.00 0.00 0.00 2.59
458 477 2.203625 GAGCAAGGGCCCAACCAA 60.204 61.111 27.56 0.00 42.56 3.67
673 694 3.640436 TACTGCGCTGTCGTCGTCG 62.640 63.158 23.87 0.00 38.14 5.12
711 757 1.600916 GCCAGGACACCACTTCACC 60.601 63.158 0.00 0.00 0.00 4.02
746 792 0.771755 TCTAGCTCTAGGCCGGATCA 59.228 55.000 5.05 0.00 43.05 2.92
748 794 0.251430 GGTCTAGCTCTAGGCCGGAT 60.251 60.000 5.05 0.00 46.58 4.18
749 795 1.150992 GGTCTAGCTCTAGGCCGGA 59.849 63.158 5.05 0.00 46.58 5.14
753 799 1.457009 CGGTGGGTCTAGCTCTAGGC 61.457 65.000 0.00 2.24 42.19 3.93
876 968 0.749454 GATGGATGTGTGTCCCTGCC 60.749 60.000 0.00 0.00 37.48 4.85
878 970 0.620030 TGGATGGATGTGTGTCCCTG 59.380 55.000 0.00 0.00 37.48 4.45
880 972 1.811558 CGATGGATGGATGTGTGTCCC 60.812 57.143 0.00 0.00 37.48 4.46
882 974 2.205074 GTCGATGGATGGATGTGTGTC 58.795 52.381 0.00 0.00 0.00 3.67
883 975 1.134401 GGTCGATGGATGGATGTGTGT 60.134 52.381 0.00 0.00 0.00 3.72
884 976 1.586422 GGTCGATGGATGGATGTGTG 58.414 55.000 0.00 0.00 0.00 3.82
885 977 0.104855 CGGTCGATGGATGGATGTGT 59.895 55.000 0.00 0.00 0.00 3.72
886 978 1.224069 GCGGTCGATGGATGGATGTG 61.224 60.000 0.00 0.00 0.00 3.21
887 979 1.069765 GCGGTCGATGGATGGATGT 59.930 57.895 0.00 0.00 0.00 3.06
888 980 1.669115 GGCGGTCGATGGATGGATG 60.669 63.158 0.00 0.00 0.00 3.51
930 1041 2.683933 CCGGCCAGTCACCTACCT 60.684 66.667 2.24 0.00 0.00 3.08
949 1071 1.805945 GCCTTCACTCACTACCGCG 60.806 63.158 0.00 0.00 0.00 6.46
954 1076 2.289072 GCACAGAAGCCTTCACTCACTA 60.289 50.000 7.29 0.00 0.00 2.74
963 1085 0.321475 GAGCAGAGCACAGAAGCCTT 60.321 55.000 0.00 0.00 34.23 4.35
966 1088 1.637478 GCAGAGCAGAGCACAGAAGC 61.637 60.000 0.00 0.00 0.00 3.86
967 1089 0.037139 AGCAGAGCAGAGCACAGAAG 60.037 55.000 0.00 0.00 0.00 2.85
968 1090 0.037512 GAGCAGAGCAGAGCACAGAA 60.038 55.000 0.00 0.00 0.00 3.02
969 1091 0.899253 AGAGCAGAGCAGAGCACAGA 60.899 55.000 0.00 0.00 0.00 3.41
970 1092 0.738063 CAGAGCAGAGCAGAGCACAG 60.738 60.000 0.00 0.00 0.00 3.66
971 1093 1.292541 CAGAGCAGAGCAGAGCACA 59.707 57.895 0.00 0.00 0.00 4.57
973 1095 1.183676 TCACAGAGCAGAGCAGAGCA 61.184 55.000 0.00 0.00 0.00 4.26
1158 1295 2.434134 GCCGTAGTCGCACTTGTCG 61.434 63.158 0.00 0.00 35.54 4.35
1200 1337 0.321122 CACTGACCAGGTTGAGGAGC 60.321 60.000 0.00 0.00 0.00 4.70
1234 1371 2.309504 GGAGGGGAGAAACTGGGGG 61.310 68.421 0.00 0.00 0.00 5.40
1237 1374 0.621082 GAAGGGAGGGGAGAAACTGG 59.379 60.000 0.00 0.00 0.00 4.00
1238 1375 1.003696 GTGAAGGGAGGGGAGAAACTG 59.996 57.143 0.00 0.00 0.00 3.16
1239 1376 1.363246 GTGAAGGGAGGGGAGAAACT 58.637 55.000 0.00 0.00 0.00 2.66
1240 1377 0.328592 GGTGAAGGGAGGGGAGAAAC 59.671 60.000 0.00 0.00 0.00 2.78
1241 1378 1.198759 CGGTGAAGGGAGGGGAGAAA 61.199 60.000 0.00 0.00 0.00 2.52
1242 1379 1.612442 CGGTGAAGGGAGGGGAGAA 60.612 63.158 0.00 0.00 0.00 2.87
1282 1422 0.948678 CGCGGGGTTGAGAAAGAAAA 59.051 50.000 0.00 0.00 0.00 2.29
1325 1474 2.354704 CCTACCTTTGACGGCATTGAGA 60.355 50.000 0.00 0.00 0.00 3.27
1384 1571 4.148825 ATCGGTCAGTGAGCCGCC 62.149 66.667 21.91 8.04 46.79 6.13
1413 1600 1.083242 CCAAAATGGGAATTGCGCCG 61.083 55.000 4.18 0.00 32.67 6.46
1414 1601 0.036483 ACCAAAATGGGAATTGCGCC 60.036 50.000 4.18 0.00 43.37 6.53
1417 1604 2.485038 CTGCAACCAAAATGGGAATTGC 59.515 45.455 13.35 13.35 43.34 3.56
1418 1605 2.485038 GCTGCAACCAAAATGGGAATTG 59.515 45.455 0.87 0.00 43.37 2.32
1426 1614 1.270550 CGAGAAGGCTGCAACCAAAAT 59.729 47.619 9.23 0.00 0.00 1.82
1432 1620 3.793144 CGGCGAGAAGGCTGCAAC 61.793 66.667 0.00 0.00 44.22 4.17
1637 1828 3.674997 TGGAAGAAACGAGGGAAGATTG 58.325 45.455 0.00 0.00 0.00 2.67
1648 1839 6.073058 TCAGAACTCAAATCATGGAAGAAACG 60.073 38.462 0.00 0.00 0.00 3.60
1652 1854 6.772605 TCTTCAGAACTCAAATCATGGAAGA 58.227 36.000 0.00 0.00 36.75 2.87
1653 1855 7.336176 TGATCTTCAGAACTCAAATCATGGAAG 59.664 37.037 0.00 0.00 0.00 3.46
1701 1903 2.283529 GGGTTCAGAGTGGAGCGGA 61.284 63.158 0.00 0.00 0.00 5.54
1705 1909 1.079543 CTGCGGGTTCAGAGTGGAG 60.080 63.158 0.00 0.00 36.19 3.86
1727 1931 0.389817 TGAGCCCGAACACGATCTTG 60.390 55.000 0.00 0.00 0.00 3.02
1857 2061 0.034059 GTACCGAGCTCCCATCCATG 59.966 60.000 8.47 0.00 0.00 3.66
1862 2066 2.125961 GGACGTACCGAGCTCCCAT 61.126 63.158 8.47 0.00 0.00 4.00
1894 2098 3.429207 GTGGAGTTTCTCGCTTCAGTTAC 59.571 47.826 0.00 0.00 0.00 2.50
1918 2122 1.565759 CAGGATGAAACCCCATCTCCA 59.434 52.381 0.00 0.00 41.88 3.86
1919 2123 1.846439 TCAGGATGAAACCCCATCTCC 59.154 52.381 0.00 0.00 45.97 3.71
1935 2151 2.419851 GGAGGAGAGAGCACATTTCAGG 60.420 54.545 0.00 0.00 0.00 3.86
1936 2152 2.500910 AGGAGGAGAGAGCACATTTCAG 59.499 50.000 0.00 0.00 0.00 3.02
1937 2153 2.544721 AGGAGGAGAGAGCACATTTCA 58.455 47.619 0.00 0.00 0.00 2.69
1958 2174 1.077930 GCTGAGCTCATTCCCTGCA 60.078 57.895 18.63 0.00 0.00 4.41
1986 2202 2.201022 CCCCGATCTTCGTCCCGAT 61.201 63.158 0.00 0.00 38.40 4.18
2003 2219 4.382320 TTGACGTACTGGGCCGCC 62.382 66.667 0.00 0.00 0.00 6.13
2005 2221 2.125673 CCTTGACGTACTGGGCCG 60.126 66.667 0.00 0.00 0.00 6.13
2116 2332 2.685387 GATGAGCTCGCCGTACCAGG 62.685 65.000 9.64 0.00 0.00 4.45
2130 2346 1.372087 GGCTTGGTCTTGGCGATGAG 61.372 60.000 0.00 0.00 0.00 2.90
2150 2366 1.080501 CACCACGTCGAGCATGTCT 60.081 57.895 0.00 0.00 0.00 3.41
2206 2422 8.527567 TGAAAATTCTTTAAAATGGGCGTAAG 57.472 30.769 0.00 0.00 43.44 2.34
2207 2423 8.361139 TCTGAAAATTCTTTAAAATGGGCGTAA 58.639 29.630 0.00 0.00 0.00 3.18
2208 2424 7.810759 GTCTGAAAATTCTTTAAAATGGGCGTA 59.189 33.333 0.00 0.00 0.00 4.42
2210 2426 6.644592 TGTCTGAAAATTCTTTAAAATGGGCG 59.355 34.615 0.00 0.00 0.00 6.13
2228 2476 6.072728 CCGGTTCATGTATCTTTTTGTCTGAA 60.073 38.462 0.00 0.00 0.00 3.02
2233 2481 4.457949 GGTCCGGTTCATGTATCTTTTTGT 59.542 41.667 0.00 0.00 0.00 2.83
2236 2484 4.019681 TCAGGTCCGGTTCATGTATCTTTT 60.020 41.667 0.00 0.00 0.00 2.27
2248 2496 0.466963 AAACGAGTTCAGGTCCGGTT 59.533 50.000 0.00 0.00 0.00 4.44
2251 2499 0.859232 CACAAACGAGTTCAGGTCCG 59.141 55.000 0.00 0.00 0.00 4.79
2252 2500 2.234300 TCACAAACGAGTTCAGGTCC 57.766 50.000 0.00 0.00 0.00 4.46
2253 2501 3.372822 TGTTTCACAAACGAGTTCAGGTC 59.627 43.478 0.00 0.00 44.28 3.85
2254 2502 3.126343 GTGTTTCACAAACGAGTTCAGGT 59.874 43.478 0.00 0.00 44.28 4.00
2255 2503 3.374058 AGTGTTTCACAAACGAGTTCAGG 59.626 43.478 0.00 0.00 44.28 3.86
2256 2504 4.334443 CAGTGTTTCACAAACGAGTTCAG 58.666 43.478 0.00 0.00 44.28 3.02
2269 2529 3.199677 CCTGTAAACGTCCAGTGTTTCA 58.800 45.455 8.47 0.00 39.96 2.69
2270 2530 2.546789 CCCTGTAAACGTCCAGTGTTTC 59.453 50.000 8.47 0.00 39.96 2.78
2276 2536 0.321298 CCACCCCTGTAAACGTCCAG 60.321 60.000 0.00 0.00 0.00 3.86
2283 2543 1.214217 TGTGTGTCCACCCCTGTAAA 58.786 50.000 0.00 0.00 41.09 2.01
2286 2546 0.768221 AGATGTGTGTCCACCCCTGT 60.768 55.000 0.00 0.00 41.09 4.00
2303 2569 2.690497 GTCGAGGATCCTGTCAATCAGA 59.310 50.000 22.02 3.20 46.27 3.27
2309 2575 1.753078 CGGGTCGAGGATCCTGTCA 60.753 63.158 22.02 0.00 28.99 3.58
2366 2632 2.034687 GCTTTCAGCAGCCCCTGA 59.965 61.111 0.11 0.11 41.89 3.86
2411 2677 4.741239 GCCCCTCCAGACTCCCCA 62.741 72.222 0.00 0.00 0.00 4.96
2456 2722 3.570975 AGAAGCTGAACACAAATGCATCA 59.429 39.130 0.00 0.00 0.00 3.07
2459 2725 2.034939 CCAGAAGCTGAACACAAATGCA 59.965 45.455 0.00 0.00 32.44 3.96
2494 2760 9.829507 AGTATCTACTGAATTTTCATCTCAAGG 57.170 33.333 0.00 0.00 36.46 3.61
2518 2784 8.043710 CCCATAAGTAAGAACTTCATCAAGAGT 58.956 37.037 0.00 0.00 42.42 3.24
2519 2785 7.497249 CCCCATAAGTAAGAACTTCATCAAGAG 59.503 40.741 0.00 0.00 42.42 2.85
2529 2795 5.163023 ACCACAAACCCCATAAGTAAGAACT 60.163 40.000 0.00 0.00 37.65 3.01
2531 2797 5.327737 ACCACAAACCCCATAAGTAAGAA 57.672 39.130 0.00 0.00 0.00 2.52
2533 2799 6.041069 TGAAAACCACAAACCCCATAAGTAAG 59.959 38.462 0.00 0.00 0.00 2.34
2534 2800 5.897824 TGAAAACCACAAACCCCATAAGTAA 59.102 36.000 0.00 0.00 0.00 2.24
2536 2802 4.290942 TGAAAACCACAAACCCCATAAGT 58.709 39.130 0.00 0.00 0.00 2.24
2543 2811 2.159014 GGAACCTGAAAACCACAAACCC 60.159 50.000 0.00 0.00 0.00 4.11
2556 2827 1.198713 GAGCTGATCCAGGAACCTGA 58.801 55.000 20.79 8.55 46.30 3.86
2611 2882 0.461548 CACCGATGAAGCTCTGCCTA 59.538 55.000 0.00 0.00 0.00 3.93
2715 2986 3.397849 TTAGCCATTGTTTGCATTGCA 57.602 38.095 7.38 7.38 36.47 4.08
2716 2987 3.933955 TCATTAGCCATTGTTTGCATTGC 59.066 39.130 0.46 0.46 0.00 3.56
2717 2988 4.930405 TGTCATTAGCCATTGTTTGCATTG 59.070 37.500 0.00 0.00 0.00 2.82
2718 2989 5.149973 TGTCATTAGCCATTGTTTGCATT 57.850 34.783 0.00 0.00 0.00 3.56
2719 2990 4.804868 TGTCATTAGCCATTGTTTGCAT 57.195 36.364 0.00 0.00 0.00 3.96
2762 3052 3.585862 TGTCATGGAAGTCGAAGCTTAC 58.414 45.455 0.00 0.00 0.00 2.34
2770 3061 2.939103 GGAGGAAATGTCATGGAAGTCG 59.061 50.000 0.00 0.00 0.00 4.18
2771 3062 4.227864 AGGAGGAAATGTCATGGAAGTC 57.772 45.455 0.00 0.00 0.00 3.01
2787 3078 2.877708 GCAGAGGAAAACAGGAAGGAGG 60.878 54.545 0.00 0.00 0.00 4.30
2788 3079 2.224621 TGCAGAGGAAAACAGGAAGGAG 60.225 50.000 0.00 0.00 0.00 3.69
2794 3085 0.595095 GCACTGCAGAGGAAAACAGG 59.405 55.000 23.35 0.00 34.40 4.00
2796 3087 1.141657 AGAGCACTGCAGAGGAAAACA 59.858 47.619 23.35 0.00 0.00 2.83
2797 3088 1.534595 CAGAGCACTGCAGAGGAAAAC 59.465 52.381 23.35 0.00 37.33 2.43
2847 3139 1.275291 CCGGTGAACTTGGCTTCTAGA 59.725 52.381 0.00 0.00 0.00 2.43
2850 3142 1.073199 CCCGGTGAACTTGGCTTCT 59.927 57.895 0.00 0.00 0.00 2.85
2865 3157 2.180204 GCGGATCATGTTGGTCCCG 61.180 63.158 1.29 0.00 44.85 5.14
2868 3160 2.709475 GCGCGGATCATGTTGGTC 59.291 61.111 8.83 0.00 0.00 4.02
2913 3205 4.164796 TGTGTAGGATCATCTGGATTGCTT 59.835 41.667 0.00 0.00 36.00 3.91
2917 3209 7.348815 TGAAAATGTGTAGGATCATCTGGATT 58.651 34.615 0.00 0.00 36.00 3.01
2919 3211 6.312141 TGAAAATGTGTAGGATCATCTGGA 57.688 37.500 0.00 0.00 0.00 3.86
2934 3226 5.336150 TGTTGTTGTGGTGATGAAAATGT 57.664 34.783 0.00 0.00 0.00 2.71
2935 3227 5.984323 TGATGTTGTTGTGGTGATGAAAATG 59.016 36.000 0.00 0.00 0.00 2.32
2936 3228 6.159299 TGATGTTGTTGTGGTGATGAAAAT 57.841 33.333 0.00 0.00 0.00 1.82
2937 3229 5.588958 TGATGTTGTTGTGGTGATGAAAA 57.411 34.783 0.00 0.00 0.00 2.29
2938 3230 5.105595 TGTTGATGTTGTTGTGGTGATGAAA 60.106 36.000 0.00 0.00 0.00 2.69
2939 3231 4.400567 TGTTGATGTTGTTGTGGTGATGAA 59.599 37.500 0.00 0.00 0.00 2.57
2951 3246 5.802465 AGATGATGAGACTGTTGATGTTGT 58.198 37.500 0.00 0.00 0.00 3.32
2959 3254 5.268387 AGGTCAGTAGATGATGAGACTGTT 58.732 41.667 0.00 0.00 40.92 3.16
2974 3269 3.764434 GACAGACATGGAGAAGGTCAGTA 59.236 47.826 0.00 0.00 32.44 2.74
2982 3277 4.562347 GCTGAAAGAGACAGACATGGAGAA 60.562 45.833 0.00 0.00 37.54 2.87
2984 3279 3.260740 GCTGAAAGAGACAGACATGGAG 58.739 50.000 0.00 0.00 37.54 3.86
2985 3280 2.027745 GGCTGAAAGAGACAGACATGGA 60.028 50.000 0.00 0.00 42.35 3.41
2986 3281 2.354259 GGCTGAAAGAGACAGACATGG 58.646 52.381 0.00 0.00 42.35 3.66
2988 3283 1.066573 CCGGCTGAAAGAGACAGACAT 60.067 52.381 0.00 0.00 42.87 3.06
2990 3285 0.390472 CCCGGCTGAAAGAGACAGAC 60.390 60.000 0.00 0.00 39.72 3.51
2991 3286 1.544825 CCCCGGCTGAAAGAGACAGA 61.545 60.000 0.00 0.00 37.54 3.41
3039 3336 4.696172 CGTGGTTCGTCGCGTTGC 62.696 66.667 5.77 0.00 36.10 4.17
3059 3356 2.116125 GCCTGAACCTGCCACCTT 59.884 61.111 0.00 0.00 0.00 3.50
3060 3357 4.335647 CGCCTGAACCTGCCACCT 62.336 66.667 0.00 0.00 0.00 4.00
3133 3436 4.124943 TACTCCTCCCTCGCCGCT 62.125 66.667 0.00 0.00 0.00 5.52
3163 3466 3.626996 CTGGATGTTGCCGCCCTCA 62.627 63.158 0.00 0.00 0.00 3.86
3242 3545 0.548682 ACCTTCACAGGCTCCATCCT 60.549 55.000 0.00 0.00 45.56 3.24
3284 3587 4.241555 GATGGACCGAGGCGCCAT 62.242 66.667 31.54 14.28 44.70 4.40
3292 3595 1.210931 GACGAACACGATGGACCGA 59.789 57.895 0.00 0.00 0.00 4.69
3320 3623 1.453745 ACGCAGGGGCATGGTAATG 60.454 57.895 0.00 0.00 41.24 1.90
3341 3644 4.137543 CAAGAACACCAAAACCTCTAGCT 58.862 43.478 0.00 0.00 0.00 3.32
3342 3645 3.304726 GCAAGAACACCAAAACCTCTAGC 60.305 47.826 0.00 0.00 0.00 3.42
3343 3646 4.023707 CAGCAAGAACACCAAAACCTCTAG 60.024 45.833 0.00 0.00 0.00 2.43
3347 3650 1.756538 CCAGCAAGAACACCAAAACCT 59.243 47.619 0.00 0.00 0.00 3.50
3348 3651 1.480545 ACCAGCAAGAACACCAAAACC 59.519 47.619 0.00 0.00 0.00 3.27
3349 3652 2.959507 ACCAGCAAGAACACCAAAAC 57.040 45.000 0.00 0.00 0.00 2.43
3364 3673 5.454755 CCTTTATGACCACCACCTATACCAG 60.455 48.000 0.00 0.00 0.00 4.00
3375 3684 0.331616 AGCCACCCTTTATGACCACC 59.668 55.000 0.00 0.00 0.00 4.61
3413 3723 9.421806 CTCTTCAGCCATCTTATAACTATCTTG 57.578 37.037 0.00 0.00 0.00 3.02
3415 3725 8.584157 CACTCTTCAGCCATCTTATAACTATCT 58.416 37.037 0.00 0.00 0.00 1.98
3463 3779 5.252863 TCAATTTCCCCTTCATCCTCTTACA 59.747 40.000 0.00 0.00 0.00 2.41
3464 3780 5.590663 GTCAATTTCCCCTTCATCCTCTTAC 59.409 44.000 0.00 0.00 0.00 2.34
3465 3781 5.252863 TGTCAATTTCCCCTTCATCCTCTTA 59.747 40.000 0.00 0.00 0.00 2.10
3467 3783 3.593328 TGTCAATTTCCCCTTCATCCTCT 59.407 43.478 0.00 0.00 0.00 3.69
3468 3784 3.968265 TGTCAATTTCCCCTTCATCCTC 58.032 45.455 0.00 0.00 0.00 3.71
3471 3787 6.122277 TCACTATGTCAATTTCCCCTTCATC 58.878 40.000 0.00 0.00 0.00 2.92
3472 3788 6.078456 TCACTATGTCAATTTCCCCTTCAT 57.922 37.500 0.00 0.00 0.00 2.57
3475 3791 6.074648 TGTTTCACTATGTCAATTTCCCCTT 58.925 36.000 0.00 0.00 0.00 3.95
3488 3804 4.406069 CCATTGCGTCTTGTTTCACTATG 58.594 43.478 0.00 0.00 0.00 2.23
3503 3819 3.947834 AGGAAAGAGTTATTCCCATTGCG 59.052 43.478 1.82 0.00 46.17 4.85
3535 3852 4.091453 ACAAGAAAACACAAACCACTCG 57.909 40.909 0.00 0.00 0.00 4.18
3544 3861 3.701542 TGCCACCATTACAAGAAAACACA 59.298 39.130 0.00 0.00 0.00 3.72
3575 3892 5.299531 GGCTGAAGGTAAATGTTTCCTATCC 59.700 44.000 0.00 0.00 0.00 2.59
3608 3926 6.015918 TCTATGTTCCCATCCAAAACAACAT 58.984 36.000 0.00 0.00 36.57 2.71
3614 3932 6.730447 TGATTCTCTATGTTCCCATCCAAAA 58.270 36.000 0.00 0.00 32.29 2.44
3615 3933 6.325993 TGATTCTCTATGTTCCCATCCAAA 57.674 37.500 0.00 0.00 32.29 3.28
3627 3945 8.772705 GCTTCATTCCTACTTTGATTCTCTATG 58.227 37.037 0.00 0.00 0.00 2.23
3628 3946 8.713036 AGCTTCATTCCTACTTTGATTCTCTAT 58.287 33.333 0.00 0.00 0.00 1.98
3643 6373 4.473444 TGGTTCAGAAAAGCTTCATTCCT 58.527 39.130 0.00 0.00 33.64 3.36
3663 6393 0.897621 GGTTTCCCATTGCCTCTTGG 59.102 55.000 0.00 0.00 0.00 3.61
3672 6402 4.798882 TGTGAAGTAGTTGGTTTCCCATT 58.201 39.130 0.00 0.00 41.49 3.16
3674 6404 3.434453 CCTGTGAAGTAGTTGGTTTCCCA 60.434 47.826 0.00 0.00 39.65 4.37
3688 6424 9.925268 CAAATTTCTTTGAAAATTCCTGTGAAG 57.075 29.630 0.00 0.00 43.71 3.02
3689 6425 9.447157 ACAAATTTCTTTGAAAATTCCTGTGAA 57.553 25.926 5.17 0.00 43.71 3.18
3691 6427 9.493206 CAACAAATTTCTTTGAAAATTCCTGTG 57.507 29.630 5.17 0.00 43.71 3.66
3746 6484 6.114187 TGTAGGAATGTTCTGATCTTGTGT 57.886 37.500 0.00 0.00 0.00 3.72
3767 6507 7.416964 AGATAGAAGTGCTAGTTCAGAATGT 57.583 36.000 0.00 0.00 32.16 2.71
3773 6513 6.122964 TCAGCTAGATAGAAGTGCTAGTTCA 58.877 40.000 0.00 0.00 35.27 3.18
3776 6516 6.542821 AGATCAGCTAGATAGAAGTGCTAGT 58.457 40.000 0.00 0.00 37.00 2.57
3777 6517 7.452880 AAGATCAGCTAGATAGAAGTGCTAG 57.547 40.000 0.00 0.00 37.00 3.42
3781 6521 7.600960 TGCATAAGATCAGCTAGATAGAAGTG 58.399 38.462 0.00 0.00 37.00 3.16
3839 6582 6.292596 GCCGAGTCTTTATTCTTATTCAGCTG 60.293 42.308 7.63 7.63 0.00 4.24
3857 6600 1.957177 TCATCTCACCTATGCCGAGTC 59.043 52.381 0.00 0.00 0.00 3.36
3858 6601 2.073252 TCATCTCACCTATGCCGAGT 57.927 50.000 0.00 0.00 0.00 4.18
3859 6602 2.930023 GCATCATCTCACCTATGCCGAG 60.930 54.545 0.00 0.00 39.01 4.63
3860 6603 1.001293 GCATCATCTCACCTATGCCGA 59.999 52.381 0.00 0.00 39.01 5.54
3861 6604 1.270465 TGCATCATCTCACCTATGCCG 60.270 52.381 0.00 0.00 43.19 5.69
3866 6610 4.122046 CGATTGTTGCATCATCTCACCTA 58.878 43.478 0.00 0.00 0.00 3.08
3870 6614 3.598299 TGACGATTGTTGCATCATCTCA 58.402 40.909 0.00 0.01 0.00 3.27
3901 6645 5.533154 ACGATAATGTTTGAACCCTTGAACA 59.467 36.000 0.00 0.00 36.55 3.18
3934 6678 0.170339 GGCAAATTTTCCTCGTCCCG 59.830 55.000 0.00 0.00 0.00 5.14
4185 6946 0.390866 AGACTCGTCGAGCGGACTTA 60.391 55.000 22.00 0.00 43.79 2.24
4278 7046 2.355132 GCTCAACATCCTCATCAAGCTG 59.645 50.000 0.00 0.00 0.00 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.