Multiple sequence alignment - TraesCS7A01G141300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G141300 chr7A 100.000 6430 0 0 1 6430 92887489 92893918 0.000000e+00 11875.0
1 TraesCS7A01G141300 chr7A 91.667 120 10 0 1127 1246 701642524 701642405 3.990000e-37 167.0
2 TraesCS7A01G141300 chr7A 95.652 69 1 2 3949 4016 92891382 92891449 6.820000e-20 110.0
3 TraesCS7A01G141300 chr7A 95.652 69 1 2 3894 3961 92891437 92891504 6.820000e-20 110.0
4 TraesCS7A01G141300 chr7D 88.080 3834 227 94 178 3911 90847970 90851673 0.000000e+00 4337.0
5 TraesCS7A01G141300 chr7D 94.696 2074 73 21 3966 6007 90851755 90853823 0.000000e+00 3186.0
6 TraesCS7A01G141300 chr7D 88.593 526 35 20 5926 6430 90854657 90855178 3.290000e-172 616.0
7 TraesCS7A01G141300 chr7D 83.680 337 55 0 4024 4360 611720460 611720124 1.040000e-82 318.0
8 TraesCS7A01G141300 chr7D 90.909 121 9 2 1127 1246 611723248 611723129 1.860000e-35 161.0
9 TraesCS7A01G141300 chr7D 87.838 74 9 0 5047 5120 611719422 611719349 3.190000e-13 87.9
10 TraesCS7A01G141300 chr7B 94.342 2015 69 14 3949 5948 42030511 42032495 0.000000e+00 3048.0
11 TraesCS7A01G141300 chr7B 95.196 1478 52 9 2499 3961 42029104 42030577 0.000000e+00 2318.0
12 TraesCS7A01G141300 chr7B 86.798 2083 131 71 438 2450 42026939 42028947 0.000000e+00 2191.0
13 TraesCS7A01G141300 chr7B 88.546 454 30 16 5995 6430 42034535 42034984 1.230000e-146 531.0
14 TraesCS7A01G141300 chr7B 87.172 343 26 13 5669 5998 42033123 42033460 2.190000e-99 374.0
15 TraesCS7A01G141300 chr7B 83.383 337 56 0 4024 4360 701187893 701187557 4.840000e-81 313.0
16 TraesCS7A01G141300 chr7B 91.736 121 10 0 1126 1246 701190612 701190492 1.110000e-37 169.0
17 TraesCS7A01G141300 chr7B 93.506 77 5 0 2449 2525 42029029 42029105 1.460000e-21 115.0
18 TraesCS7A01G141300 chr1A 87.273 165 19 2 5242 5405 104936269 104936432 3.060000e-43 187.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G141300 chr7A 92887489 92893918 6429 False 4031.666667 11875 97.101333 1 6430 3 chr7A.!!$F1 6429
1 TraesCS7A01G141300 chr7D 90847970 90855178 7208 False 2713.000000 4337 90.456333 178 6430 3 chr7D.!!$F1 6252
2 TraesCS7A01G141300 chr7B 42026939 42034984 8045 False 1429.500000 3048 90.926667 438 6430 6 chr7B.!!$F1 5992
3 TraesCS7A01G141300 chr7B 701187557 701190612 3055 True 241.000000 313 87.559500 1126 4360 2 chr7B.!!$R1 3234

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
42 43 0.034059 AGAAGACCAGGCTCACAACG 59.966 55.0 0.00 0.0 0.00 4.10 F
424 451 0.104855 CGCCAGCACCTAGATAAGCA 59.895 55.0 0.00 0.0 0.00 3.91 F
1236 1298 0.105760 AGATCCAGACCGCCATCTCT 60.106 55.0 0.00 0.0 0.00 3.10 F
2135 2707 0.034756 TTGCGAGCTGCCTTGACTTA 59.965 50.0 0.00 0.0 45.60 2.24 F
2151 2723 0.107945 CTTAGCTCACTCCACTGCCC 60.108 60.0 0.00 0.0 0.00 5.36 F
3231 4054 0.108585 GGAACCCAGCTGTGAGTTCA 59.891 55.0 28.29 0.0 40.27 3.18 F
4634 5526 0.249911 GAGCTGGTGTGAAGGTCGTT 60.250 55.0 0.00 0.0 32.96 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1769 2309 1.068588 GTGTCAAAGGGGCCAACTTTC 59.931 52.381 18.58 11.18 36.09 2.62 R
2119 2673 0.108424 AGCTAAGTCAAGGCAGCTCG 60.108 55.000 0.00 0.00 40.25 5.03 R
2380 2953 0.250467 CACCCAATCCTATCCCAGCG 60.250 60.000 0.00 0.00 0.00 5.18 R
3650 4500 0.463474 GGAGAGCCAACCAGCTGATC 60.463 60.000 17.39 0.00 45.15 2.92 R
3929 4793 3.201266 TGGGGGATAAGACACCATAACAC 59.799 47.826 0.00 0.00 34.56 3.32 R
4981 5874 0.914417 TACTCCCCAGGAAGCAAGGG 60.914 60.000 0.00 0.00 42.44 3.95 R
6027 9370 0.252239 TACCTTCAGCCTCAGAGCCA 60.252 55.000 0.00 0.00 0.00 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.832741 CCCAAATTCACCCGTCCA 57.167 55.556 0.00 0.00 0.00 4.02
18 19 3.043998 CCCAAATTCACCCGTCCAA 57.956 52.632 0.00 0.00 0.00 3.53
19 20 1.333177 CCCAAATTCACCCGTCCAAA 58.667 50.000 0.00 0.00 0.00 3.28
20 21 1.899142 CCCAAATTCACCCGTCCAAAT 59.101 47.619 0.00 0.00 0.00 2.32
21 22 2.094234 CCCAAATTCACCCGTCCAAATC 60.094 50.000 0.00 0.00 0.00 2.17
22 23 2.825532 CCAAATTCACCCGTCCAAATCT 59.174 45.455 0.00 0.00 0.00 2.40
23 24 4.013728 CCAAATTCACCCGTCCAAATCTA 58.986 43.478 0.00 0.00 0.00 1.98
24 25 4.096382 CCAAATTCACCCGTCCAAATCTAG 59.904 45.833 0.00 0.00 0.00 2.43
25 26 4.837093 AATTCACCCGTCCAAATCTAGA 57.163 40.909 0.00 0.00 0.00 2.43
26 27 4.837093 ATTCACCCGTCCAAATCTAGAA 57.163 40.909 0.00 0.00 0.00 2.10
27 28 3.887621 TCACCCGTCCAAATCTAGAAG 57.112 47.619 0.00 0.00 0.00 2.85
28 29 3.437213 TCACCCGTCCAAATCTAGAAGA 58.563 45.455 0.00 0.00 0.00 2.87
29 30 3.194968 TCACCCGTCCAAATCTAGAAGAC 59.805 47.826 0.00 1.17 0.00 3.01
30 31 2.500504 ACCCGTCCAAATCTAGAAGACC 59.499 50.000 0.00 0.00 0.00 3.85
31 32 2.500098 CCCGTCCAAATCTAGAAGACCA 59.500 50.000 0.00 0.00 0.00 4.02
32 33 3.430929 CCCGTCCAAATCTAGAAGACCAG 60.431 52.174 0.00 0.00 0.00 4.00
33 34 3.430929 CCGTCCAAATCTAGAAGACCAGG 60.431 52.174 0.00 0.00 0.00 4.45
34 35 3.536570 GTCCAAATCTAGAAGACCAGGC 58.463 50.000 0.00 0.00 0.00 4.85
35 36 3.198853 GTCCAAATCTAGAAGACCAGGCT 59.801 47.826 0.00 0.00 0.00 4.58
36 37 3.452627 TCCAAATCTAGAAGACCAGGCTC 59.547 47.826 0.00 0.00 0.00 4.70
37 38 3.198635 CCAAATCTAGAAGACCAGGCTCA 59.801 47.826 0.00 0.00 0.00 4.26
38 39 4.187694 CAAATCTAGAAGACCAGGCTCAC 58.812 47.826 0.00 0.00 0.00 3.51
39 40 2.604912 TCTAGAAGACCAGGCTCACA 57.395 50.000 0.00 0.00 0.00 3.58
40 41 2.889512 TCTAGAAGACCAGGCTCACAA 58.110 47.619 0.00 0.00 0.00 3.33
41 42 2.563179 TCTAGAAGACCAGGCTCACAAC 59.437 50.000 0.00 0.00 0.00 3.32
42 43 0.034059 AGAAGACCAGGCTCACAACG 59.966 55.000 0.00 0.00 0.00 4.10
43 44 1.569479 GAAGACCAGGCTCACAACGC 61.569 60.000 0.00 0.00 0.00 4.84
44 45 2.031163 GACCAGGCTCACAACGCT 59.969 61.111 0.00 0.00 0.00 5.07
45 46 2.029844 GACCAGGCTCACAACGCTC 61.030 63.158 0.00 0.00 0.00 5.03
46 47 2.743928 CCAGGCTCACAACGCTCC 60.744 66.667 0.00 0.00 0.00 4.70
47 48 2.345244 CAGGCTCACAACGCTCCT 59.655 61.111 0.00 0.00 0.00 3.69
48 49 1.739562 CAGGCTCACAACGCTCCTC 60.740 63.158 0.00 0.00 0.00 3.71
49 50 2.435059 GGCTCACAACGCTCCTCC 60.435 66.667 0.00 0.00 0.00 4.30
50 51 2.435059 GCTCACAACGCTCCTCCC 60.435 66.667 0.00 0.00 0.00 4.30
51 52 2.266055 CTCACAACGCTCCTCCCC 59.734 66.667 0.00 0.00 0.00 4.81
52 53 2.203788 TCACAACGCTCCTCCCCT 60.204 61.111 0.00 0.00 0.00 4.79
53 54 0.970937 CTCACAACGCTCCTCCCCTA 60.971 60.000 0.00 0.00 0.00 3.53
54 55 0.543410 TCACAACGCTCCTCCCCTAA 60.543 55.000 0.00 0.00 0.00 2.69
55 56 0.391263 CACAACGCTCCTCCCCTAAC 60.391 60.000 0.00 0.00 0.00 2.34
56 57 1.153628 CAACGCTCCTCCCCTAACG 60.154 63.158 0.00 0.00 0.00 3.18
57 58 2.356780 AACGCTCCTCCCCTAACGG 61.357 63.158 0.00 0.00 0.00 4.44
58 59 2.441532 CGCTCCTCCCCTAACGGA 60.442 66.667 0.00 0.00 0.00 4.69
59 60 1.833049 CGCTCCTCCCCTAACGGAT 60.833 63.158 0.00 0.00 0.00 4.18
60 61 1.400530 CGCTCCTCCCCTAACGGATT 61.401 60.000 0.00 0.00 0.00 3.01
61 62 1.713297 GCTCCTCCCCTAACGGATTA 58.287 55.000 0.00 0.00 0.00 1.75
62 63 2.258109 GCTCCTCCCCTAACGGATTAT 58.742 52.381 0.00 0.00 0.00 1.28
63 64 2.638363 GCTCCTCCCCTAACGGATTATT 59.362 50.000 0.00 0.00 0.00 1.40
64 65 3.072622 GCTCCTCCCCTAACGGATTATTT 59.927 47.826 0.00 0.00 0.00 1.40
65 66 4.285260 GCTCCTCCCCTAACGGATTATTTA 59.715 45.833 0.00 0.00 0.00 1.40
66 67 5.221783 GCTCCTCCCCTAACGGATTATTTAA 60.222 44.000 0.00 0.00 0.00 1.52
67 68 6.689690 GCTCCTCCCCTAACGGATTATTTAAA 60.690 42.308 0.00 0.00 0.00 1.52
68 69 7.210618 TCCTCCCCTAACGGATTATTTAAAA 57.789 36.000 0.00 0.00 0.00 1.52
69 70 7.641249 TCCTCCCCTAACGGATTATTTAAAAA 58.359 34.615 0.00 0.00 0.00 1.94
91 92 2.791383 CCACGAGGTGAAAAATGCAA 57.209 45.000 0.00 0.00 35.23 4.08
92 93 3.302365 CCACGAGGTGAAAAATGCAAT 57.698 42.857 0.00 0.00 35.23 3.56
93 94 4.433186 CCACGAGGTGAAAAATGCAATA 57.567 40.909 0.00 0.00 35.23 1.90
94 95 4.165779 CCACGAGGTGAAAAATGCAATAC 58.834 43.478 0.00 0.00 35.23 1.89
95 96 4.320861 CCACGAGGTGAAAAATGCAATACA 60.321 41.667 0.00 0.00 35.23 2.29
96 97 5.218885 CACGAGGTGAAAAATGCAATACAA 58.781 37.500 0.00 0.00 35.23 2.41
97 98 5.116983 CACGAGGTGAAAAATGCAATACAAC 59.883 40.000 0.00 0.00 35.23 3.32
98 99 5.009610 ACGAGGTGAAAAATGCAATACAACT 59.990 36.000 0.00 0.00 0.00 3.16
99 100 5.343058 CGAGGTGAAAAATGCAATACAACTG 59.657 40.000 0.00 0.00 0.00 3.16
100 101 4.990426 AGGTGAAAAATGCAATACAACTGC 59.010 37.500 0.00 0.00 40.35 4.40
108 109 1.059549 GCAATACAACTGCAATTGCGC 59.940 47.619 24.58 14.57 44.09 6.09
109 110 1.655099 CAATACAACTGCAATTGCGCC 59.345 47.619 24.58 0.08 45.83 6.53
110 111 0.887247 ATACAACTGCAATTGCGCCA 59.113 45.000 24.58 7.34 45.83 5.69
111 112 0.670706 TACAACTGCAATTGCGCCAA 59.329 45.000 24.58 6.97 45.83 4.52
112 113 0.875474 ACAACTGCAATTGCGCCAAC 60.875 50.000 24.58 0.00 45.83 3.77
113 114 1.661197 AACTGCAATTGCGCCAACG 60.661 52.632 24.58 11.07 45.83 4.10
123 124 3.261951 CGCCAACGCACTATCCCG 61.262 66.667 0.00 0.00 34.03 5.14
124 125 2.895372 GCCAACGCACTATCCCGG 60.895 66.667 0.00 0.00 34.03 5.73
125 126 2.895372 CCAACGCACTATCCCGGC 60.895 66.667 0.00 0.00 0.00 6.13
126 127 2.186903 CAACGCACTATCCCGGCT 59.813 61.111 0.00 0.00 0.00 5.52
127 128 1.883084 CAACGCACTATCCCGGCTC 60.883 63.158 0.00 0.00 0.00 4.70
128 129 2.058595 AACGCACTATCCCGGCTCT 61.059 57.895 0.00 0.00 0.00 4.09
129 130 0.754217 AACGCACTATCCCGGCTCTA 60.754 55.000 0.00 0.00 0.00 2.43
130 131 0.539901 ACGCACTATCCCGGCTCTAT 60.540 55.000 0.00 0.00 0.00 1.98
131 132 0.603569 CGCACTATCCCGGCTCTATT 59.396 55.000 0.00 0.00 0.00 1.73
132 133 1.000955 CGCACTATCCCGGCTCTATTT 59.999 52.381 0.00 0.00 0.00 1.40
133 134 2.548067 CGCACTATCCCGGCTCTATTTT 60.548 50.000 0.00 0.00 0.00 1.82
134 135 3.477530 GCACTATCCCGGCTCTATTTTT 58.522 45.455 0.00 0.00 0.00 1.94
152 153 4.398549 TTTTTGCTACGAGTATGCACAC 57.601 40.909 0.00 0.00 36.37 3.82
153 154 2.004583 TTGCTACGAGTATGCACACC 57.995 50.000 0.00 0.00 36.37 4.16
154 155 1.182667 TGCTACGAGTATGCACACCT 58.817 50.000 0.00 0.00 0.00 4.00
155 156 1.134367 TGCTACGAGTATGCACACCTC 59.866 52.381 0.00 0.00 0.00 3.85
156 157 1.405821 GCTACGAGTATGCACACCTCT 59.594 52.381 0.00 0.00 0.00 3.69
157 158 2.796383 GCTACGAGTATGCACACCTCTG 60.796 54.545 0.00 0.00 0.00 3.35
158 159 0.532573 ACGAGTATGCACACCTCTGG 59.467 55.000 0.00 0.00 0.00 3.86
159 160 0.532573 CGAGTATGCACACCTCTGGT 59.467 55.000 0.00 0.00 35.62 4.00
160 161 1.066858 CGAGTATGCACACCTCTGGTT 60.067 52.381 0.00 0.00 31.02 3.67
161 162 2.165641 CGAGTATGCACACCTCTGGTTA 59.834 50.000 0.00 0.00 31.02 2.85
162 163 3.181475 CGAGTATGCACACCTCTGGTTAT 60.181 47.826 0.00 0.00 31.02 1.89
163 164 4.037565 CGAGTATGCACACCTCTGGTTATA 59.962 45.833 0.00 0.00 31.02 0.98
164 165 5.451381 CGAGTATGCACACCTCTGGTTATAA 60.451 44.000 0.00 0.00 31.02 0.98
165 166 6.500589 AGTATGCACACCTCTGGTTATAAT 57.499 37.500 0.00 0.00 31.02 1.28
166 167 6.900194 AGTATGCACACCTCTGGTTATAATT 58.100 36.000 0.00 0.00 31.02 1.40
167 168 7.346471 AGTATGCACACCTCTGGTTATAATTT 58.654 34.615 0.00 0.00 31.02 1.82
168 169 6.699575 ATGCACACCTCTGGTTATAATTTC 57.300 37.500 0.00 0.00 31.02 2.17
169 170 5.815581 TGCACACCTCTGGTTATAATTTCT 58.184 37.500 0.00 0.00 31.02 2.52
170 171 5.647658 TGCACACCTCTGGTTATAATTTCTG 59.352 40.000 0.00 0.00 31.02 3.02
171 172 5.449177 GCACACCTCTGGTTATAATTTCTGC 60.449 44.000 0.00 0.00 31.02 4.26
172 173 5.066505 CACACCTCTGGTTATAATTTCTGCC 59.933 44.000 0.00 0.00 31.02 4.85
173 174 5.192927 CACCTCTGGTTATAATTTCTGCCA 58.807 41.667 0.00 0.00 31.02 4.92
174 175 5.829924 CACCTCTGGTTATAATTTCTGCCAT 59.170 40.000 0.00 0.00 31.02 4.40
175 176 6.016777 CACCTCTGGTTATAATTTCTGCCATC 60.017 42.308 0.00 0.00 31.02 3.51
176 177 6.064060 CCTCTGGTTATAATTTCTGCCATCA 58.936 40.000 0.00 0.00 0.00 3.07
179 180 6.547141 TCTGGTTATAATTTCTGCCATCAAGG 59.453 38.462 0.00 0.00 41.84 3.61
185 186 2.496899 TTCTGCCATCAAGGACTTCC 57.503 50.000 0.00 0.00 41.22 3.46
186 187 0.620556 TCTGCCATCAAGGACTTCCC 59.379 55.000 0.00 0.00 41.22 3.97
211 212 7.976175 CCTAGCCCATTTCAACTTTTTATCTTC 59.024 37.037 0.00 0.00 0.00 2.87
212 213 7.301868 AGCCCATTTCAACTTTTTATCTTCA 57.698 32.000 0.00 0.00 0.00 3.02
213 214 7.910584 AGCCCATTTCAACTTTTTATCTTCAT 58.089 30.769 0.00 0.00 0.00 2.57
214 215 8.377799 AGCCCATTTCAACTTTTTATCTTCATT 58.622 29.630 0.00 0.00 0.00 2.57
242 243 2.965716 AAAGCACTCCGCCAGCAAGT 62.966 55.000 0.00 0.00 44.04 3.16
244 245 1.671054 GCACTCCGCCAGCAAGTAA 60.671 57.895 0.00 0.00 32.94 2.24
253 254 2.742856 CGCCAGCAAGTAATGGATCAGA 60.743 50.000 0.00 0.00 39.02 3.27
254 255 2.877168 GCCAGCAAGTAATGGATCAGAG 59.123 50.000 0.00 0.00 39.02 3.35
255 256 3.683847 GCCAGCAAGTAATGGATCAGAGT 60.684 47.826 0.00 0.00 39.02 3.24
256 257 4.521146 CCAGCAAGTAATGGATCAGAGTT 58.479 43.478 0.00 0.00 39.02 3.01
257 258 4.334759 CCAGCAAGTAATGGATCAGAGTTG 59.665 45.833 0.00 0.00 39.02 3.16
258 259 4.334759 CAGCAAGTAATGGATCAGAGTTGG 59.665 45.833 0.00 0.00 0.00 3.77
259 260 4.018960 AGCAAGTAATGGATCAGAGTTGGT 60.019 41.667 0.00 0.00 0.00 3.67
260 261 4.095483 GCAAGTAATGGATCAGAGTTGGTG 59.905 45.833 0.00 0.00 0.00 4.17
261 262 5.491070 CAAGTAATGGATCAGAGTTGGTGA 58.509 41.667 0.00 0.00 0.00 4.02
262 263 5.762179 AGTAATGGATCAGAGTTGGTGAA 57.238 39.130 0.00 0.00 0.00 3.18
263 264 5.738909 AGTAATGGATCAGAGTTGGTGAAG 58.261 41.667 0.00 0.00 0.00 3.02
264 265 4.647564 AATGGATCAGAGTTGGTGAAGT 57.352 40.909 0.00 0.00 0.00 3.01
265 266 5.762179 AATGGATCAGAGTTGGTGAAGTA 57.238 39.130 0.00 0.00 0.00 2.24
266 267 4.808414 TGGATCAGAGTTGGTGAAGTAG 57.192 45.455 0.00 0.00 0.00 2.57
267 268 3.055819 TGGATCAGAGTTGGTGAAGTAGC 60.056 47.826 0.00 0.00 0.00 3.58
268 269 3.196685 GGATCAGAGTTGGTGAAGTAGCT 59.803 47.826 0.00 0.00 0.00 3.32
269 270 4.323104 GGATCAGAGTTGGTGAAGTAGCTT 60.323 45.833 0.00 0.00 0.00 3.74
270 271 5.105310 GGATCAGAGTTGGTGAAGTAGCTTA 60.105 44.000 0.00 0.00 0.00 3.09
271 272 6.407525 GGATCAGAGTTGGTGAAGTAGCTTAT 60.408 42.308 0.00 0.00 0.00 1.73
272 273 5.967088 TCAGAGTTGGTGAAGTAGCTTATC 58.033 41.667 0.00 0.00 0.00 1.75
273 274 4.800993 CAGAGTTGGTGAAGTAGCTTATCG 59.199 45.833 0.00 0.00 0.00 2.92
274 275 4.113354 GAGTTGGTGAAGTAGCTTATCGG 58.887 47.826 0.00 0.00 0.00 4.18
292 293 1.584495 GGCCTAACCAAAAGCACCG 59.416 57.895 0.00 0.00 38.86 4.94
294 295 0.240145 GCCTAACCAAAAGCACCGTC 59.760 55.000 0.00 0.00 0.00 4.79
313 314 1.754803 TCATCATCGGGCGTCTTAACT 59.245 47.619 0.00 0.00 0.00 2.24
315 316 3.572682 TCATCATCGGGCGTCTTAACTAT 59.427 43.478 0.00 0.00 0.00 2.12
317 318 3.220110 TCATCGGGCGTCTTAACTATCT 58.780 45.455 0.00 0.00 0.00 1.98
318 319 3.252701 TCATCGGGCGTCTTAACTATCTC 59.747 47.826 0.00 0.00 0.00 2.75
319 320 2.646930 TCGGGCGTCTTAACTATCTCA 58.353 47.619 0.00 0.00 0.00 3.27
320 321 3.220110 TCGGGCGTCTTAACTATCTCAT 58.780 45.455 0.00 0.00 0.00 2.90
322 323 3.004419 CGGGCGTCTTAACTATCTCATCA 59.996 47.826 0.00 0.00 0.00 3.07
324 325 5.542779 GGGCGTCTTAACTATCTCATCAAT 58.457 41.667 0.00 0.00 0.00 2.57
325 326 5.406780 GGGCGTCTTAACTATCTCATCAATG 59.593 44.000 0.00 0.00 0.00 2.82
326 327 5.406780 GGCGTCTTAACTATCTCATCAATGG 59.593 44.000 0.00 0.00 0.00 3.16
340 352 8.125978 TCTCATCAATGGCAATAAAAACTTCT 57.874 30.769 0.00 0.00 0.00 2.85
350 362 7.040271 TGGCAATAAAAACTTCTTACCAGTACC 60.040 37.037 0.00 0.00 0.00 3.34
357 369 7.923414 AAACTTCTTACCAGTACCATCAATC 57.077 36.000 0.00 0.00 0.00 2.67
365 377 3.535561 CAGTACCATCAATCCAGTGACC 58.464 50.000 0.00 0.00 0.00 4.02
367 379 2.795231 ACCATCAATCCAGTGACCAG 57.205 50.000 0.00 0.00 0.00 4.00
369 381 1.386533 CATCAATCCAGTGACCAGGC 58.613 55.000 0.00 0.00 0.00 4.85
371 383 1.003355 CAATCCAGTGACCAGGCGT 60.003 57.895 0.00 0.00 0.00 5.68
380 392 3.277211 GACCAGGCGTCGTGCTGTA 62.277 63.158 0.00 0.00 45.43 2.74
381 393 2.507102 CCAGGCGTCGTGCTGTAG 60.507 66.667 0.00 0.00 45.43 2.74
382 394 3.181967 CAGGCGTCGTGCTGTAGC 61.182 66.667 0.00 0.00 45.43 3.58
383 395 3.374402 AGGCGTCGTGCTGTAGCT 61.374 61.111 5.38 0.00 45.43 3.32
385 412 2.126463 GCGTCGTGCTGTAGCTGA 60.126 61.111 5.38 0.74 42.66 4.26
389 416 1.554392 GTCGTGCTGTAGCTGAGATG 58.446 55.000 5.38 0.00 42.66 2.90
394 421 1.134995 TGCTGTAGCTGAGATGGAACG 60.135 52.381 5.38 0.00 42.66 3.95
396 423 2.803451 CTGTAGCTGAGATGGAACGAC 58.197 52.381 0.00 0.00 0.00 4.34
419 446 4.227134 CGCCGCCAGCACCTAGAT 62.227 66.667 0.00 0.00 44.04 1.98
421 448 1.445942 GCCGCCAGCACCTAGATAA 59.554 57.895 0.00 0.00 42.97 1.75
422 449 0.601311 GCCGCCAGCACCTAGATAAG 60.601 60.000 0.00 0.00 42.97 1.73
423 450 0.601311 CCGCCAGCACCTAGATAAGC 60.601 60.000 0.00 0.00 0.00 3.09
424 451 0.104855 CGCCAGCACCTAGATAAGCA 59.895 55.000 0.00 0.00 0.00 3.91
425 452 1.871408 CGCCAGCACCTAGATAAGCAG 60.871 57.143 0.00 0.00 0.00 4.24
426 453 1.542108 GCCAGCACCTAGATAAGCAGG 60.542 57.143 0.00 0.00 36.81 4.85
427 454 2.042464 CCAGCACCTAGATAAGCAGGA 58.958 52.381 0.00 0.00 35.91 3.86
428 455 2.036992 CCAGCACCTAGATAAGCAGGAG 59.963 54.545 0.00 0.00 35.91 3.69
429 456 2.697751 CAGCACCTAGATAAGCAGGAGT 59.302 50.000 0.00 0.00 35.76 3.85
430 457 3.891977 CAGCACCTAGATAAGCAGGAGTA 59.108 47.826 0.00 0.00 35.76 2.59
431 458 4.022416 CAGCACCTAGATAAGCAGGAGTAG 60.022 50.000 0.00 0.00 35.76 2.57
432 459 4.141135 AGCACCTAGATAAGCAGGAGTAGA 60.141 45.833 0.00 0.00 35.76 2.59
454 481 3.191888 AGATAGATAGATGCCCCGGTT 57.808 47.619 0.00 0.00 0.00 4.44
457 489 1.507140 AGATAGATGCCCCGGTTGAA 58.493 50.000 0.00 0.00 0.00 2.69
513 545 4.147322 GCGTGCCATCCGTTCGTG 62.147 66.667 0.00 0.00 0.00 4.35
514 546 3.487202 CGTGCCATCCGTTCGTGG 61.487 66.667 0.00 0.00 38.55 4.94
516 548 1.964373 GTGCCATCCGTTCGTGGTT 60.964 57.895 4.34 0.00 37.81 3.67
517 549 0.671163 GTGCCATCCGTTCGTGGTTA 60.671 55.000 4.34 0.00 37.81 2.85
518 550 0.671163 TGCCATCCGTTCGTGGTTAC 60.671 55.000 4.34 0.00 37.81 2.50
519 551 1.363885 GCCATCCGTTCGTGGTTACC 61.364 60.000 0.00 0.00 37.81 2.85
542 574 3.181397 CCAGAAATGCATTGTTAAGCCG 58.819 45.455 13.82 0.00 0.00 5.52
552 584 1.894881 TGTTAAGCCGGGTTAACCAC 58.105 50.000 43.36 31.12 40.69 4.16
572 604 2.476619 ACGCGAATTTGTTCACTCAGAG 59.523 45.455 15.93 0.00 0.00 3.35
574 606 3.067106 GCGAATTTGTTCACTCAGAGGA 58.933 45.455 1.53 0.00 0.00 3.71
577 616 4.387256 CGAATTTGTTCACTCAGAGGACTC 59.613 45.833 1.53 0.00 0.00 3.36
610 650 3.411351 CCGTGGTTTCGCTCCGTG 61.411 66.667 0.00 0.00 0.00 4.94
611 651 2.355363 CGTGGTTTCGCTCCGTGA 60.355 61.111 0.00 0.00 0.00 4.35
642 688 2.748605 GTGATGGCAGATTCTACCGAG 58.251 52.381 0.00 0.00 0.00 4.63
643 689 1.688735 TGATGGCAGATTCTACCGAGG 59.311 52.381 0.00 0.00 0.00 4.63
645 691 0.975556 TGGCAGATTCTACCGAGGCA 60.976 55.000 0.00 0.00 0.00 4.75
647 693 0.249657 GCAGATTCTACCGAGGCAGG 60.250 60.000 0.00 0.00 37.30 4.85
648 694 0.249657 CAGATTCTACCGAGGCAGGC 60.250 60.000 0.00 0.00 33.69 4.85
683 743 0.664767 GAGAATCGAATCCCCTCGCG 60.665 60.000 0.00 0.00 38.73 5.87
685 745 0.664767 GAATCGAATCCCCTCGCGAG 60.665 60.000 29.06 29.06 38.73 5.03
686 746 1.392710 AATCGAATCCCCTCGCGAGT 61.393 55.000 32.41 15.61 38.73 4.18
687 747 0.536687 ATCGAATCCCCTCGCGAGTA 60.537 55.000 32.41 18.87 38.73 2.59
688 748 1.008767 CGAATCCCCTCGCGAGTAC 60.009 63.158 32.41 15.88 31.04 2.73
689 749 1.363080 GAATCCCCTCGCGAGTACC 59.637 63.158 32.41 12.79 0.00 3.34
690 750 1.380785 AATCCCCTCGCGAGTACCA 60.381 57.895 32.41 15.07 0.00 3.25
691 751 1.673808 AATCCCCTCGCGAGTACCAC 61.674 60.000 32.41 0.00 0.00 4.16
711 771 4.574828 CCACTACCACCGGATAAAAAGATG 59.425 45.833 9.46 0.00 0.00 2.90
765 825 1.503542 GATGGCCGCAGAACACTTG 59.496 57.895 0.00 0.00 0.00 3.16
824 886 3.257393 CTGGAGTTCTTCTCAATCACGG 58.743 50.000 0.00 0.00 44.40 4.94
826 888 3.515502 TGGAGTTCTTCTCAATCACGGAT 59.484 43.478 0.00 0.00 44.40 4.18
904 966 2.430921 GGAGCACGGAGACACACG 60.431 66.667 0.00 0.00 0.00 4.49
985 1047 2.507769 CGTTCGGTCCGTTAGGGC 60.508 66.667 11.88 0.00 42.75 5.19
988 1050 0.738762 GTTCGGTCCGTTAGGGCTTC 60.739 60.000 11.88 0.00 43.12 3.86
989 1051 2.202703 CGGTCCGTTAGGGCTTCG 60.203 66.667 2.08 0.00 43.12 3.79
990 1052 2.186125 GGTCCGTTAGGGCTTCGG 59.814 66.667 0.00 0.00 43.12 4.30
991 1053 2.510918 GTCCGTTAGGGCTTCGGC 60.511 66.667 0.00 0.00 43.35 5.54
1236 1298 0.105760 AGATCCAGACCGCCATCTCT 60.106 55.000 0.00 0.00 0.00 3.10
1417 1550 2.028130 ACAATGTTTGAAACTGCCGGA 58.972 42.857 5.05 0.00 0.00 5.14
1420 1553 4.462483 ACAATGTTTGAAACTGCCGGATAT 59.538 37.500 5.05 0.00 0.00 1.63
1426 1559 6.431543 TGTTTGAAACTGCCGGATATTCTTTA 59.568 34.615 5.05 0.00 0.00 1.85
1427 1560 6.431198 TTGAAACTGCCGGATATTCTTTAC 57.569 37.500 5.05 0.00 0.00 2.01
1429 1562 5.584649 TGAAACTGCCGGATATTCTTTACTG 59.415 40.000 5.05 0.00 0.00 2.74
1435 1571 6.408035 TGCCGGATATTCTTTACTGTACAAA 58.592 36.000 5.05 0.00 0.00 2.83
1449 1585 4.463186 ACTGTACAAAGTAGAATCTCGCCT 59.537 41.667 0.00 0.00 0.00 5.52
1450 1586 5.651139 ACTGTACAAAGTAGAATCTCGCCTA 59.349 40.000 0.00 0.00 0.00 3.93
1451 1587 6.132791 TGTACAAAGTAGAATCTCGCCTAG 57.867 41.667 0.00 0.00 0.00 3.02
1453 1589 3.181474 ACAAAGTAGAATCTCGCCTAGGC 60.181 47.826 24.75 24.75 37.85 3.93
1454 1590 2.366640 AGTAGAATCTCGCCTAGGCA 57.633 50.000 32.47 18.48 42.06 4.75
1455 1591 2.235016 AGTAGAATCTCGCCTAGGCAG 58.765 52.381 32.47 25.86 42.06 4.85
1458 1594 1.753368 GAATCTCGCCTAGGCAGCCT 61.753 60.000 32.47 20.63 42.06 4.58
1459 1595 1.341156 AATCTCGCCTAGGCAGCCTT 61.341 55.000 32.47 17.12 42.06 4.35
1558 1694 3.119814 GGGAACTTTCGAATTTCAGCTCC 60.120 47.826 17.30 12.95 0.00 4.70
1559 1695 3.119814 GGAACTTTCGAATTTCAGCTCCC 60.120 47.826 17.30 4.41 0.00 4.30
1608 2129 5.884792 AGGATAAAACCATGAGAAAGCTGAG 59.115 40.000 0.00 0.00 0.00 3.35
1616 2137 1.066573 TGAGAAAGCTGAGCTGTAGCC 60.067 52.381 8.16 0.00 42.07 3.93
1722 2243 2.561569 CAGAACAGTGTCGTTTTCCCT 58.438 47.619 0.00 0.00 0.00 4.20
1742 2282 5.187186 TCCCTAAGATATATTTGTCGCTCCC 59.813 44.000 0.00 0.00 0.00 4.30
1779 2320 1.344114 TGCAGGATTTGAAAGTTGGCC 59.656 47.619 0.00 0.00 0.00 5.36
1802 2343 4.803613 CCCTTTGACACTTTTGTTTGCTAC 59.196 41.667 0.00 0.00 35.47 3.58
1803 2344 4.499040 CCTTTGACACTTTTGTTTGCTACG 59.501 41.667 0.00 0.00 35.47 3.51
1804 2345 3.059634 TGACACTTTTGTTTGCTACGC 57.940 42.857 0.00 0.00 35.47 4.42
1805 2346 2.680841 TGACACTTTTGTTTGCTACGCT 59.319 40.909 0.00 0.00 35.47 5.07
1806 2347 3.872182 TGACACTTTTGTTTGCTACGCTA 59.128 39.130 0.00 0.00 35.47 4.26
1807 2348 4.025229 TGACACTTTTGTTTGCTACGCTAG 60.025 41.667 0.00 0.00 35.47 3.42
1810 2351 5.524646 ACACTTTTGTTTGCTACGCTAGTAA 59.475 36.000 0.00 0.00 28.43 2.24
1813 2354 7.589954 CACTTTTGTTTGCTACGCTAGTAAATT 59.410 33.333 9.91 0.00 41.28 1.82
1824 2365 9.550811 GCTACGCTAGTAAATTTTTGTTTATGT 57.449 29.630 0.00 0.00 31.59 2.29
1827 2368 7.810759 ACGCTAGTAAATTTTTGTTTATGTGGG 59.189 33.333 0.00 0.00 0.00 4.61
1828 2369 7.274686 CGCTAGTAAATTTTTGTTTATGTGGGG 59.725 37.037 0.00 0.00 0.00 4.96
1830 2371 7.073457 AGTAAATTTTTGTTTATGTGGGGCT 57.927 32.000 0.00 0.00 0.00 5.19
1832 2373 8.311109 AGTAAATTTTTGTTTATGTGGGGCTAG 58.689 33.333 0.00 0.00 0.00 3.42
1834 2375 4.390129 TTTTGTTTATGTGGGGCTAGGA 57.610 40.909 0.00 0.00 0.00 2.94
1835 2376 4.390129 TTTGTTTATGTGGGGCTAGGAA 57.610 40.909 0.00 0.00 0.00 3.36
1836 2377 4.390129 TTGTTTATGTGGGGCTAGGAAA 57.610 40.909 0.00 0.00 0.00 3.13
1901 2454 6.814644 TGAAATGAAAATTGACATCAGATGCC 59.185 34.615 10.59 0.00 0.00 4.40
1914 2467 1.181098 AGATGCCTGTGTTTGGTGCC 61.181 55.000 0.00 0.00 0.00 5.01
2005 2559 4.645535 AGTAAAGATGCAGCTTTCAGTGA 58.354 39.130 31.46 12.75 38.85 3.41
2048 2602 7.546667 ACCGTCGCTGTCTTATTTTAATTAGAA 59.453 33.333 0.00 0.00 0.00 2.10
2049 2603 8.056571 CCGTCGCTGTCTTATTTTAATTAGAAG 58.943 37.037 0.00 0.00 0.00 2.85
2050 2604 8.804743 CGTCGCTGTCTTATTTTAATTAGAAGA 58.195 33.333 0.00 0.00 0.00 2.87
2078 2632 3.741476 CGCTTGCTGGTGGAAGGC 61.741 66.667 0.00 0.00 41.18 4.35
2109 2663 4.099170 GCCAGACGCAGCAAGCTG 62.099 66.667 17.35 17.35 46.15 4.24
2119 2673 2.050985 GCAAGCTGGACACGTTGC 60.051 61.111 0.00 0.00 38.63 4.17
2135 2707 0.034756 TTGCGAGCTGCCTTGACTTA 59.965 50.000 0.00 0.00 45.60 2.24
2136 2708 0.390340 TGCGAGCTGCCTTGACTTAG 60.390 55.000 0.00 0.00 45.60 2.18
2137 2709 1.700600 GCGAGCTGCCTTGACTTAGC 61.701 60.000 0.00 0.00 37.76 3.09
2139 2711 3.851051 AGCTGCCTTGACTTAGCTC 57.149 52.632 0.00 0.00 42.45 4.09
2140 2712 0.979665 AGCTGCCTTGACTTAGCTCA 59.020 50.000 0.00 0.00 42.45 4.26
2141 2713 1.082690 GCTGCCTTGACTTAGCTCAC 58.917 55.000 0.00 0.00 33.53 3.51
2142 2714 1.338579 GCTGCCTTGACTTAGCTCACT 60.339 52.381 0.00 0.00 33.53 3.41
2143 2715 2.615869 CTGCCTTGACTTAGCTCACTC 58.384 52.381 0.00 0.00 0.00 3.51
2144 2716 1.276421 TGCCTTGACTTAGCTCACTCC 59.724 52.381 0.00 0.00 0.00 3.85
2145 2717 1.276421 GCCTTGACTTAGCTCACTCCA 59.724 52.381 0.00 0.00 0.00 3.86
2146 2718 2.933056 GCCTTGACTTAGCTCACTCCAC 60.933 54.545 0.00 0.00 0.00 4.02
2147 2719 2.564947 CCTTGACTTAGCTCACTCCACT 59.435 50.000 0.00 0.00 0.00 4.00
2148 2720 3.583806 CTTGACTTAGCTCACTCCACTG 58.416 50.000 0.00 0.00 0.00 3.66
2149 2721 1.273606 TGACTTAGCTCACTCCACTGC 59.726 52.381 0.00 0.00 0.00 4.40
2150 2722 0.610687 ACTTAGCTCACTCCACTGCC 59.389 55.000 0.00 0.00 0.00 4.85
2151 2723 0.107945 CTTAGCTCACTCCACTGCCC 60.108 60.000 0.00 0.00 0.00 5.36
2152 2724 0.545309 TTAGCTCACTCCACTGCCCT 60.545 55.000 0.00 0.00 0.00 5.19
2235 2807 2.235016 ACGTGTCGTCAGTTTGCCG 61.235 57.895 0.00 0.00 33.69 5.69
2279 2851 1.270518 CCATCTGCCTAACCCTCATCG 60.271 57.143 0.00 0.00 0.00 3.84
2305 2878 2.384828 GTGTCCTGTTTCTTGGGGTTT 58.615 47.619 0.00 0.00 0.00 3.27
2380 2953 3.883669 AGATCTGCTCTTGGAATTGTCC 58.116 45.455 0.00 0.00 45.21 4.02
2406 2979 2.624674 ATAGGATTGGGTGCGTGGCC 62.625 60.000 0.00 0.00 0.00 5.36
2457 3113 5.163652 GCAGTGGGTGGTAGATATTTGTTTC 60.164 44.000 0.00 0.00 0.00 2.78
2460 3116 5.589050 GTGGGTGGTAGATATTTGTTTCTCC 59.411 44.000 0.00 0.00 0.00 3.71
2461 3117 4.814771 GGGTGGTAGATATTTGTTTCTCCG 59.185 45.833 0.00 0.00 0.00 4.63
2513 3194 8.767478 TTCGTTACTTACTAATTTCAGGAAGG 57.233 34.615 5.40 0.00 40.31 3.46
2525 3206 6.590234 ATTTCAGGAAGGTACAATTGAACC 57.410 37.500 13.59 5.93 35.91 3.62
2580 3261 5.182001 ACTGCTAGCTGTAATGAAAAGTTGG 59.818 40.000 24.01 0.00 0.00 3.77
2814 3637 2.716017 GCCAGCTCTCTACACCGCT 61.716 63.158 0.00 0.00 0.00 5.52
2829 3652 2.442999 CGCTCTCTTCAGCACTGCG 61.443 63.158 0.00 0.00 39.62 5.18
3027 3850 6.009589 TGTGGTTCTTTACATCACCATCAAT 58.990 36.000 0.00 0.00 41.37 2.57
3093 3916 3.198635 AGTCCATCACTGGTTATGGTCTG 59.801 47.826 12.03 0.00 42.77 3.51
3168 3991 3.044305 GCTGACGTGGGTGCTGAC 61.044 66.667 0.00 0.00 0.00 3.51
3231 4054 0.108585 GGAACCCAGCTGTGAGTTCA 59.891 55.000 28.29 0.00 40.27 3.18
3344 4194 7.121463 TGAACTTTAAACTCTTGTTTGCAGGTA 59.879 33.333 4.64 0.00 45.01 3.08
3386 4236 3.448301 ACAATGTTGGTGATATTGCTGGG 59.552 43.478 0.00 0.00 39.64 4.45
3542 4392 0.459489 TTGTTTGCTTGCTCACCACC 59.541 50.000 0.00 0.00 0.00 4.61
3545 4395 1.108727 TTTGCTTGCTCACCACCCTG 61.109 55.000 0.00 0.00 0.00 4.45
3551 4401 2.908073 GCTCACCACCCTGTTTGCG 61.908 63.158 0.00 0.00 0.00 4.85
3650 4500 0.389296 TGACTATCGGTGTTGCGGTG 60.389 55.000 0.00 0.00 0.00 4.94
3768 4620 5.451908 ACTCAATTTGCAATGTTGTACTCG 58.548 37.500 18.80 9.95 0.00 4.18
3941 4805 9.638239 ATTGTTCATATTTTGTGTTATGGTGTC 57.362 29.630 0.00 0.00 0.00 3.67
3943 4807 8.855110 TGTTCATATTTTGTGTTATGGTGTCTT 58.145 29.630 0.00 0.00 0.00 3.01
3949 4813 4.497291 TGTGTTATGGTGTCTTATCCCC 57.503 45.455 0.00 0.00 0.00 4.81
3950 4814 3.201266 TGTGTTATGGTGTCTTATCCCCC 59.799 47.826 0.00 0.00 0.00 5.40
3951 4815 3.201266 GTGTTATGGTGTCTTATCCCCCA 59.799 47.826 0.00 0.00 0.00 4.96
3954 4818 5.043732 TGTTATGGTGTCTTATCCCCCAATT 60.044 40.000 0.00 0.00 0.00 2.32
3955 4819 6.160636 TGTTATGGTGTCTTATCCCCCAATTA 59.839 38.462 0.00 0.00 0.00 1.40
3956 4820 4.788925 TGGTGTCTTATCCCCCAATTAG 57.211 45.455 0.00 0.00 0.00 1.73
3957 4821 4.116113 TGGTGTCTTATCCCCCAATTAGT 58.884 43.478 0.00 0.00 0.00 2.24
3959 4823 5.015817 TGGTGTCTTATCCCCCAATTAGTTT 59.984 40.000 0.00 0.00 0.00 2.66
3960 4824 5.593095 GGTGTCTTATCCCCCAATTAGTTTC 59.407 44.000 0.00 0.00 0.00 2.78
3961 4825 6.424032 GTGTCTTATCCCCCAATTAGTTTCT 58.576 40.000 0.00 0.00 0.00 2.52
3963 4827 7.715686 GTGTCTTATCCCCCAATTAGTTTCTAG 59.284 40.741 0.00 0.00 0.00 2.43
3964 4828 7.404980 TGTCTTATCCCCCAATTAGTTTCTAGT 59.595 37.037 0.00 0.00 0.00 2.57
4095 4986 0.984230 TCATCTTCGGTCTTGCCCTT 59.016 50.000 0.00 0.00 0.00 3.95
4488 5380 1.077716 GCGGAATTAGGCAGTGGGT 60.078 57.895 0.00 0.00 0.00 4.51
4531 5423 7.172342 AGCCACTTTATTGGTTATGTAACTCA 58.828 34.615 3.22 0.00 39.09 3.41
4533 5425 7.120726 GCCACTTTATTGGTTATGTAACTCACT 59.879 37.037 3.22 0.00 39.09 3.41
4634 5526 0.249911 GAGCTGGTGTGAAGGTCGTT 60.250 55.000 0.00 0.00 32.96 3.85
4910 5802 2.290323 CCTCATTGTCGGAACCCTCTTT 60.290 50.000 0.00 0.00 0.00 2.52
4961 5853 1.073284 GGTGCCCTTGTTTCTGGAGTA 59.927 52.381 0.00 0.00 0.00 2.59
4981 5874 2.952116 ACAGGTATCCTAGTGCTCTCC 58.048 52.381 0.00 0.00 29.64 3.71
4986 5879 1.799933 ATCCTAGTGCTCTCCCCTTG 58.200 55.000 0.00 0.00 0.00 3.61
4993 5886 1.077858 GCTCTCCCCTTGCTTCCTG 60.078 63.158 0.00 0.00 0.00 3.86
4994 5887 1.606531 CTCTCCCCTTGCTTCCTGG 59.393 63.158 0.00 0.00 0.00 4.45
4995 5888 1.919600 CTCTCCCCTTGCTTCCTGGG 61.920 65.000 0.00 0.00 40.59 4.45
5142 6035 4.460382 TCAGAAGCCCTGATTGTTGATTTC 59.540 41.667 2.59 0.00 46.38 2.17
5143 6036 3.766051 AGAAGCCCTGATTGTTGATTTCC 59.234 43.478 0.00 0.00 0.00 3.13
5170 6063 9.806203 TTTTGACTTTATATTGATGAGCCAATG 57.194 29.630 0.00 0.00 37.34 2.82
5187 6080 6.363065 AGCCAATGTATTGATCATGTCTCTT 58.637 36.000 6.18 0.00 40.14 2.85
5189 6082 7.994911 AGCCAATGTATTGATCATGTCTCTTAA 59.005 33.333 6.18 0.00 40.14 1.85
5190 6083 8.072567 GCCAATGTATTGATCATGTCTCTTAAC 58.927 37.037 6.18 0.00 40.14 2.01
5191 6084 9.334947 CCAATGTATTGATCATGTCTCTTAACT 57.665 33.333 6.18 0.00 40.14 2.24
5357 6250 2.355132 GCTCAACATCCTCATCAAGCTG 59.645 50.000 0.00 0.00 0.00 4.24
5450 6350 0.390866 AGACTCGTCGAGCGGACTTA 60.391 55.000 22.00 0.00 43.79 2.24
5701 6618 0.170339 GGCAAATTTTCCTCGTCCCG 59.830 55.000 0.00 0.00 0.00 5.14
5734 6651 5.533154 ACGATAATGTTTGAACCCTTGAACA 59.467 36.000 0.00 0.00 36.55 3.18
5765 6682 3.598299 TGACGATTGTTGCATCATCTCA 58.402 40.909 0.00 0.01 0.00 3.27
5769 6686 4.122046 CGATTGTTGCATCATCTCACCTA 58.878 43.478 0.00 0.00 0.00 3.08
5774 6691 1.270465 TGCATCATCTCACCTATGCCG 60.270 52.381 0.00 0.00 43.19 5.69
5778 6695 1.957177 TCATCTCACCTATGCCGAGTC 59.043 52.381 0.00 0.00 0.00 3.36
5796 6714 6.292596 GCCGAGTCTTTATTCTTATTCAGCTG 60.293 42.308 7.63 7.63 0.00 4.24
5854 6775 7.600960 TGCATAAGATCAGCTAGATAGAAGTG 58.399 38.462 0.00 0.00 37.00 3.16
5858 6779 7.452880 AAGATCAGCTAGATAGAAGTGCTAG 57.547 40.000 0.00 0.00 37.00 3.42
5859 6780 6.542821 AGATCAGCTAGATAGAAGTGCTAGT 58.457 40.000 0.00 0.00 37.00 2.57
5862 6783 6.122964 TCAGCTAGATAGAAGTGCTAGTTCA 58.877 40.000 0.00 0.00 35.27 3.18
5868 6789 7.416964 AGATAGAAGTGCTAGTTCAGAATGT 57.583 36.000 0.00 0.00 32.16 2.71
5889 6810 6.114187 TGTAGGAATGTTCTGATCTTGTGT 57.886 37.500 0.00 0.00 0.00 3.72
5945 6868 9.447157 AACAAATTTCTTTGAAAATTCCTGTGA 57.553 25.926 5.17 0.00 43.71 3.58
5947 6870 9.925268 CAAATTTCTTTGAAAATTCCTGTGAAG 57.075 29.630 0.00 0.00 43.71 3.02
5961 6886 3.434453 CCTGTGAAGTAGTTGGTTTCCCA 60.434 47.826 0.00 0.00 39.65 4.37
5962 6887 4.398319 CTGTGAAGTAGTTGGTTTCCCAT 58.602 43.478 0.00 0.00 41.49 4.00
5972 6903 0.897621 GGTTTCCCATTGCCTCTTGG 59.102 55.000 0.00 0.00 0.00 3.61
5992 6923 4.473444 TGGTTCAGAAAAGCTTCATTCCT 58.527 39.130 0.00 0.00 33.64 3.36
6007 6938 8.713036 AGCTTCATTCCTACTTTGATTCTCTAT 58.287 33.333 0.00 0.00 0.00 1.98
6008 6939 8.772705 GCTTCATTCCTACTTTGATTCTCTATG 58.227 37.037 0.00 0.00 0.00 2.23
6020 9363 6.325993 TGATTCTCTATGTTCCCATCCAAA 57.674 37.500 0.00 0.00 32.29 3.28
6021 9364 6.730447 TGATTCTCTATGTTCCCATCCAAAA 58.270 36.000 0.00 0.00 32.29 2.44
6027 9370 6.015918 TCTATGTTCCCATCCAAAACAACAT 58.984 36.000 0.00 0.00 36.57 2.71
6060 9404 5.299531 GGCTGAAGGTAAATGTTTCCTATCC 59.700 44.000 0.00 0.00 0.00 2.59
6091 9435 3.701542 TGCCACCATTACAAGAAAACACA 59.298 39.130 0.00 0.00 0.00 3.72
6100 9444 4.091453 ACAAGAAAACACAAACCACTCG 57.909 40.909 0.00 0.00 0.00 4.18
6132 9477 3.947834 AGGAAAGAGTTATTCCCATTGCG 59.052 43.478 1.82 0.00 46.17 4.85
6147 9492 4.406069 CCATTGCGTCTTGTTTCACTATG 58.594 43.478 0.00 0.00 0.00 2.23
6160 9505 6.074648 TGTTTCACTATGTCAATTTCCCCTT 58.925 36.000 0.00 0.00 0.00 3.95
6163 9508 6.078456 TCACTATGTCAATTTCCCCTTCAT 57.922 37.500 0.00 0.00 0.00 2.57
6164 9509 6.122277 TCACTATGTCAATTTCCCCTTCATC 58.878 40.000 0.00 0.00 0.00 2.92
6167 9512 3.968265 TGTCAATTTCCCCTTCATCCTC 58.032 45.455 0.00 0.00 0.00 3.71
6168 9513 3.593328 TGTCAATTTCCCCTTCATCCTCT 59.407 43.478 0.00 0.00 0.00 3.69
6170 9515 5.252863 TGTCAATTTCCCCTTCATCCTCTTA 59.747 40.000 0.00 0.00 0.00 2.10
6171 9516 5.590663 GTCAATTTCCCCTTCATCCTCTTAC 59.409 44.000 0.00 0.00 0.00 2.34
6172 9517 5.252863 TCAATTTCCCCTTCATCCTCTTACA 59.747 40.000 0.00 0.00 0.00 2.41
6220 9567 8.584157 CACTCTTCAGCCATCTTATAACTATCT 58.416 37.037 0.00 0.00 0.00 1.98
6222 9569 9.421806 CTCTTCAGCCATCTTATAACTATCTTG 57.578 37.037 0.00 0.00 0.00 3.02
6260 9612 0.331616 AGCCACCCTTTATGACCACC 59.668 55.000 0.00 0.00 0.00 4.61
6271 9623 5.454755 CCTTTATGACCACCACCTATACCAG 60.455 48.000 0.00 0.00 0.00 4.00
6286 9639 2.959507 ACCAGCAAGAACACCAAAAC 57.040 45.000 0.00 0.00 0.00 2.43
6287 9640 1.480545 ACCAGCAAGAACACCAAAACC 59.519 47.619 0.00 0.00 0.00 3.27
6288 9641 1.756538 CCAGCAAGAACACCAAAACCT 59.243 47.619 0.00 0.00 0.00 3.50
6290 9643 2.689983 CAGCAAGAACACCAAAACCTCT 59.310 45.455 0.00 0.00 0.00 3.69
6291 9644 3.882888 CAGCAAGAACACCAAAACCTCTA 59.117 43.478 0.00 0.00 0.00 2.43
6292 9645 4.023707 CAGCAAGAACACCAAAACCTCTAG 60.024 45.833 0.00 0.00 0.00 2.43
6293 9646 3.304726 GCAAGAACACCAAAACCTCTAGC 60.305 47.826 0.00 0.00 0.00 3.42
6294 9647 4.137543 CAAGAACACCAAAACCTCTAGCT 58.862 43.478 0.00 0.00 0.00 3.32
6315 9673 1.453745 ACGCAGGGGCATGGTAATG 60.454 57.895 0.00 0.00 41.24 1.90
6343 9701 1.210931 GACGAACACGATGGACCGA 59.789 57.895 0.00 0.00 0.00 4.69
6351 9709 4.241555 GATGGACCGAGGCGCCAT 62.242 66.667 31.54 14.28 44.70 4.40
6393 9751 0.548682 ACCTTCACAGGCTCCATCCT 60.549 55.000 0.00 0.00 45.56 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.333177 TTTGGACGGGTGAATTTGGG 58.667 50.000 0.00 0.00 0.00 4.12
1 2 2.825532 AGATTTGGACGGGTGAATTTGG 59.174 45.455 0.00 0.00 0.00 3.28
2 3 4.941263 TCTAGATTTGGACGGGTGAATTTG 59.059 41.667 0.00 0.00 0.00 2.32
4 5 4.837093 TCTAGATTTGGACGGGTGAATT 57.163 40.909 0.00 0.00 0.00 2.17
6 7 3.835978 TCTTCTAGATTTGGACGGGTGAA 59.164 43.478 0.00 0.00 0.00 3.18
7 8 3.194968 GTCTTCTAGATTTGGACGGGTGA 59.805 47.826 0.00 0.00 0.00 4.02
8 9 3.522553 GTCTTCTAGATTTGGACGGGTG 58.477 50.000 0.00 0.00 0.00 4.61
9 10 2.500504 GGTCTTCTAGATTTGGACGGGT 59.499 50.000 0.00 0.00 0.00 5.28
12 13 3.786635 CCTGGTCTTCTAGATTTGGACG 58.213 50.000 0.00 0.00 0.00 4.79
13 14 3.198853 AGCCTGGTCTTCTAGATTTGGAC 59.801 47.826 0.00 0.58 0.00 4.02
14 15 3.452627 GAGCCTGGTCTTCTAGATTTGGA 59.547 47.826 0.00 0.00 0.00 3.53
15 16 3.198635 TGAGCCTGGTCTTCTAGATTTGG 59.801 47.826 0.00 0.00 0.00 3.28
16 17 4.187694 GTGAGCCTGGTCTTCTAGATTTG 58.812 47.826 0.00 0.00 0.00 2.32
17 18 3.840666 TGTGAGCCTGGTCTTCTAGATTT 59.159 43.478 0.00 0.00 0.00 2.17
18 19 3.445008 TGTGAGCCTGGTCTTCTAGATT 58.555 45.455 0.00 0.00 0.00 2.40
19 20 3.107402 TGTGAGCCTGGTCTTCTAGAT 57.893 47.619 0.00 0.00 0.00 1.98
20 21 2.563179 GTTGTGAGCCTGGTCTTCTAGA 59.437 50.000 0.00 0.00 0.00 2.43
21 22 2.672478 CGTTGTGAGCCTGGTCTTCTAG 60.672 54.545 0.00 0.00 0.00 2.43
22 23 1.272490 CGTTGTGAGCCTGGTCTTCTA 59.728 52.381 0.00 0.00 0.00 2.10
23 24 0.034059 CGTTGTGAGCCTGGTCTTCT 59.966 55.000 0.00 0.00 0.00 2.85
24 25 1.569479 GCGTTGTGAGCCTGGTCTTC 61.569 60.000 0.00 0.00 0.00 2.87
25 26 1.598130 GCGTTGTGAGCCTGGTCTT 60.598 57.895 0.00 0.00 0.00 3.01
26 27 2.031163 GCGTTGTGAGCCTGGTCT 59.969 61.111 0.00 0.00 0.00 3.85
27 28 2.029844 GAGCGTTGTGAGCCTGGTC 61.030 63.158 0.00 0.00 34.64 4.02
28 29 2.031163 GAGCGTTGTGAGCCTGGT 59.969 61.111 0.00 0.00 34.64 4.00
29 30 2.743928 GGAGCGTTGTGAGCCTGG 60.744 66.667 0.00 0.00 34.64 4.45
30 31 1.739562 GAGGAGCGTTGTGAGCCTG 60.740 63.158 0.00 0.00 34.64 4.85
31 32 2.659610 GAGGAGCGTTGTGAGCCT 59.340 61.111 0.00 0.00 34.64 4.58
32 33 2.435059 GGAGGAGCGTTGTGAGCC 60.435 66.667 0.00 0.00 34.64 4.70
33 34 2.435059 GGGAGGAGCGTTGTGAGC 60.435 66.667 0.00 0.00 0.00 4.26
34 35 0.970937 TAGGGGAGGAGCGTTGTGAG 60.971 60.000 0.00 0.00 0.00 3.51
35 36 0.543410 TTAGGGGAGGAGCGTTGTGA 60.543 55.000 0.00 0.00 0.00 3.58
36 37 0.391263 GTTAGGGGAGGAGCGTTGTG 60.391 60.000 0.00 0.00 0.00 3.33
37 38 1.885163 CGTTAGGGGAGGAGCGTTGT 61.885 60.000 0.00 0.00 0.00 3.32
38 39 1.153628 CGTTAGGGGAGGAGCGTTG 60.154 63.158 0.00 0.00 0.00 4.10
39 40 2.356780 CCGTTAGGGGAGGAGCGTT 61.357 63.158 0.00 0.00 0.00 4.84
40 41 2.584873 ATCCGTTAGGGGAGGAGCGT 62.585 60.000 0.00 0.00 40.02 5.07
41 42 1.400530 AATCCGTTAGGGGAGGAGCG 61.401 60.000 0.00 0.00 40.02 5.03
42 43 1.713297 TAATCCGTTAGGGGAGGAGC 58.287 55.000 0.00 0.00 40.02 4.70
43 44 4.976540 AAATAATCCGTTAGGGGAGGAG 57.023 45.455 0.00 0.00 40.02 3.69
44 45 6.828307 TTTAAATAATCCGTTAGGGGAGGA 57.172 37.500 0.00 0.00 40.02 3.71
45 46 7.885009 TTTTTAAATAATCCGTTAGGGGAGG 57.115 36.000 0.00 0.00 40.02 4.30
67 68 3.868661 GCATTTTTCACCTCGTGGTTTTT 59.131 39.130 6.39 0.00 46.05 1.94
68 69 3.118956 TGCATTTTTCACCTCGTGGTTTT 60.119 39.130 6.39 0.00 46.05 2.43
69 70 2.428890 TGCATTTTTCACCTCGTGGTTT 59.571 40.909 6.39 0.00 46.05 3.27
70 71 2.028130 TGCATTTTTCACCTCGTGGTT 58.972 42.857 6.39 0.00 46.05 3.67
72 73 2.791383 TTGCATTTTTCACCTCGTGG 57.209 45.000 0.99 0.99 39.83 4.94
73 74 4.793071 TGTATTGCATTTTTCACCTCGTG 58.207 39.130 0.00 0.00 34.45 4.35
74 75 5.009610 AGTTGTATTGCATTTTTCACCTCGT 59.990 36.000 0.00 0.00 0.00 4.18
75 76 5.343058 CAGTTGTATTGCATTTTTCACCTCG 59.657 40.000 0.00 0.00 0.00 4.63
76 77 5.119125 GCAGTTGTATTGCATTTTTCACCTC 59.881 40.000 0.00 0.00 41.17 3.85
77 78 4.990426 GCAGTTGTATTGCATTTTTCACCT 59.010 37.500 0.00 0.00 41.17 4.00
78 79 4.749099 TGCAGTTGTATTGCATTTTTCACC 59.251 37.500 0.00 0.00 45.89 4.02
79 80 5.903764 TGCAGTTGTATTGCATTTTTCAC 57.096 34.783 0.00 0.00 45.89 3.18
88 89 1.059549 GCGCAATTGCAGTTGTATTGC 59.940 47.619 28.77 19.95 46.54 3.56
89 90 1.655099 GGCGCAATTGCAGTTGTATTG 59.345 47.619 28.77 12.76 42.21 1.90
90 91 1.271934 TGGCGCAATTGCAGTTGTATT 59.728 42.857 28.77 0.00 42.21 1.89
91 92 0.887247 TGGCGCAATTGCAGTTGTAT 59.113 45.000 28.77 0.00 42.21 2.29
92 93 0.670706 TTGGCGCAATTGCAGTTGTA 59.329 45.000 28.77 7.01 42.21 2.41
93 94 0.875474 GTTGGCGCAATTGCAGTTGT 60.875 50.000 28.77 0.00 42.21 3.32
94 95 1.854664 GTTGGCGCAATTGCAGTTG 59.145 52.632 28.77 16.96 42.21 3.16
95 96 1.661197 CGTTGGCGCAATTGCAGTT 60.661 52.632 28.77 0.00 42.21 3.16
96 97 2.050168 CGTTGGCGCAATTGCAGT 60.050 55.556 28.77 0.00 42.21 4.40
106 107 3.261951 CGGGATAGTGCGTTGGCG 61.262 66.667 0.00 0.00 44.10 5.69
107 108 2.895372 CCGGGATAGTGCGTTGGC 60.895 66.667 0.00 0.00 40.52 4.52
108 109 2.895372 GCCGGGATAGTGCGTTGG 60.895 66.667 2.18 0.00 0.00 3.77
109 110 1.883084 GAGCCGGGATAGTGCGTTG 60.883 63.158 2.18 0.00 0.00 4.10
110 111 0.754217 TAGAGCCGGGATAGTGCGTT 60.754 55.000 2.18 0.00 0.00 4.84
111 112 0.539901 ATAGAGCCGGGATAGTGCGT 60.540 55.000 2.18 0.00 0.00 5.24
112 113 0.603569 AATAGAGCCGGGATAGTGCG 59.396 55.000 2.18 0.00 0.00 5.34
113 114 2.841442 AAATAGAGCCGGGATAGTGC 57.159 50.000 2.18 0.00 0.00 4.40
131 132 3.187637 GGTGTGCATACTCGTAGCAAAAA 59.812 43.478 13.64 0.00 40.35 1.94
132 133 2.739913 GGTGTGCATACTCGTAGCAAAA 59.260 45.455 13.64 0.00 40.35 2.44
133 134 2.028476 AGGTGTGCATACTCGTAGCAAA 60.028 45.455 13.64 0.00 40.35 3.68
134 135 1.548719 AGGTGTGCATACTCGTAGCAA 59.451 47.619 13.64 0.00 40.35 3.91
135 136 1.134367 GAGGTGTGCATACTCGTAGCA 59.866 52.381 13.64 0.00 35.63 3.49
136 137 1.405821 AGAGGTGTGCATACTCGTAGC 59.594 52.381 13.64 0.00 36.40 3.58
137 138 2.223595 CCAGAGGTGTGCATACTCGTAG 60.224 54.545 13.64 6.13 36.40 3.51
138 139 1.749063 CCAGAGGTGTGCATACTCGTA 59.251 52.381 13.64 0.00 36.40 3.43
139 140 0.532573 CCAGAGGTGTGCATACTCGT 59.467 55.000 13.64 0.00 36.40 4.18
140 141 0.532573 ACCAGAGGTGTGCATACTCG 59.467 55.000 13.64 6.78 36.40 4.18
141 142 2.770164 AACCAGAGGTGTGCATACTC 57.230 50.000 13.64 9.96 35.34 2.59
142 143 5.950544 TTATAACCAGAGGTGTGCATACT 57.049 39.130 13.64 0.21 35.34 2.12
143 144 7.499232 AGAAATTATAACCAGAGGTGTGCATAC 59.501 37.037 4.79 4.79 35.34 2.39
144 145 7.498900 CAGAAATTATAACCAGAGGTGTGCATA 59.501 37.037 0.00 0.00 35.34 3.14
145 146 6.319658 CAGAAATTATAACCAGAGGTGTGCAT 59.680 38.462 0.00 0.00 35.34 3.96
146 147 5.647658 CAGAAATTATAACCAGAGGTGTGCA 59.352 40.000 0.00 0.00 35.34 4.57
147 148 5.449177 GCAGAAATTATAACCAGAGGTGTGC 60.449 44.000 0.00 0.00 35.34 4.57
148 149 5.066505 GGCAGAAATTATAACCAGAGGTGTG 59.933 44.000 0.00 0.00 35.34 3.82
149 150 5.193679 GGCAGAAATTATAACCAGAGGTGT 58.806 41.667 0.00 0.00 35.34 4.16
150 151 5.192927 TGGCAGAAATTATAACCAGAGGTG 58.807 41.667 0.00 0.00 35.34 4.00
151 152 5.450818 TGGCAGAAATTATAACCAGAGGT 57.549 39.130 0.00 0.00 37.65 3.85
152 153 6.064060 TGATGGCAGAAATTATAACCAGAGG 58.936 40.000 0.00 0.00 0.00 3.69
153 154 7.255381 CCTTGATGGCAGAAATTATAACCAGAG 60.255 40.741 0.00 0.00 0.00 3.35
154 155 6.547141 CCTTGATGGCAGAAATTATAACCAGA 59.453 38.462 0.00 0.00 0.00 3.86
155 156 6.547141 TCCTTGATGGCAGAAATTATAACCAG 59.453 38.462 0.00 0.00 35.26 4.00
156 157 6.321181 GTCCTTGATGGCAGAAATTATAACCA 59.679 38.462 0.00 0.00 35.26 3.67
157 158 6.547510 AGTCCTTGATGGCAGAAATTATAACC 59.452 38.462 0.00 0.00 35.26 2.85
158 159 7.573968 AGTCCTTGATGGCAGAAATTATAAC 57.426 36.000 0.00 0.00 35.26 1.89
159 160 7.285401 GGAAGTCCTTGATGGCAGAAATTATAA 59.715 37.037 0.00 0.00 35.26 0.98
160 161 6.772716 GGAAGTCCTTGATGGCAGAAATTATA 59.227 38.462 0.00 0.00 35.26 0.98
161 162 5.595952 GGAAGTCCTTGATGGCAGAAATTAT 59.404 40.000 0.00 0.00 35.26 1.28
162 163 4.949856 GGAAGTCCTTGATGGCAGAAATTA 59.050 41.667 0.00 0.00 35.26 1.40
163 164 3.766051 GGAAGTCCTTGATGGCAGAAATT 59.234 43.478 0.00 0.00 35.26 1.82
164 165 3.359950 GGAAGTCCTTGATGGCAGAAAT 58.640 45.455 0.00 0.00 35.26 2.17
165 166 2.555227 GGGAAGTCCTTGATGGCAGAAA 60.555 50.000 0.00 0.00 35.95 2.52
166 167 1.004745 GGGAAGTCCTTGATGGCAGAA 59.995 52.381 0.00 0.00 35.95 3.02
167 168 0.620556 GGGAAGTCCTTGATGGCAGA 59.379 55.000 0.00 0.00 35.95 4.26
168 169 0.622665 AGGGAAGTCCTTGATGGCAG 59.377 55.000 0.00 0.00 45.47 4.85
169 170 1.839994 CTAGGGAAGTCCTTGATGGCA 59.160 52.381 0.00 0.00 45.47 4.92
170 171 1.475930 GCTAGGGAAGTCCTTGATGGC 60.476 57.143 0.00 0.00 45.47 4.40
171 172 1.141858 GGCTAGGGAAGTCCTTGATGG 59.858 57.143 0.00 0.00 45.47 3.51
172 173 2.629336 GGCTAGGGAAGTCCTTGATG 57.371 55.000 0.00 0.00 45.47 3.07
179 180 3.017442 GTTGAAATGGGCTAGGGAAGTC 58.983 50.000 0.00 0.00 0.00 3.01
185 186 7.410120 AGATAAAAAGTTGAAATGGGCTAGG 57.590 36.000 0.00 0.00 0.00 3.02
186 187 8.522830 TGAAGATAAAAAGTTGAAATGGGCTAG 58.477 33.333 0.00 0.00 0.00 3.42
211 212 5.687285 GGCGGAGTGCTTTTTCATATAAATG 59.313 40.000 0.00 0.00 45.43 2.32
212 213 5.359576 TGGCGGAGTGCTTTTTCATATAAAT 59.640 36.000 0.00 0.00 45.43 1.40
213 214 4.702612 TGGCGGAGTGCTTTTTCATATAAA 59.297 37.500 0.00 0.00 45.43 1.40
214 215 4.265893 TGGCGGAGTGCTTTTTCATATAA 58.734 39.130 0.00 0.00 45.43 0.98
216 217 2.684881 CTGGCGGAGTGCTTTTTCATAT 59.315 45.455 0.00 0.00 45.43 1.78
218 219 0.883833 CTGGCGGAGTGCTTTTTCAT 59.116 50.000 0.00 0.00 45.43 2.57
219 220 1.795170 GCTGGCGGAGTGCTTTTTCA 61.795 55.000 0.00 0.00 45.43 2.69
220 221 1.081175 GCTGGCGGAGTGCTTTTTC 60.081 57.895 0.00 0.00 45.43 2.29
221 222 1.391157 TTGCTGGCGGAGTGCTTTTT 61.391 50.000 0.00 0.00 45.43 1.94
227 228 0.729116 CATTACTTGCTGGCGGAGTG 59.271 55.000 0.00 0.00 0.00 3.51
242 243 5.762179 ACTTCACCAACTCTGATCCATTA 57.238 39.130 0.00 0.00 0.00 1.90
244 245 4.383552 GCTACTTCACCAACTCTGATCCAT 60.384 45.833 0.00 0.00 0.00 3.41
253 254 3.118738 CCCGATAAGCTACTTCACCAACT 60.119 47.826 0.00 0.00 0.00 3.16
254 255 3.195661 CCCGATAAGCTACTTCACCAAC 58.804 50.000 0.00 0.00 0.00 3.77
255 256 2.419574 GCCCGATAAGCTACTTCACCAA 60.420 50.000 0.00 0.00 0.00 3.67
256 257 1.138266 GCCCGATAAGCTACTTCACCA 59.862 52.381 0.00 0.00 0.00 4.17
257 258 1.540580 GGCCCGATAAGCTACTTCACC 60.541 57.143 0.00 0.00 0.00 4.02
258 259 1.413077 AGGCCCGATAAGCTACTTCAC 59.587 52.381 0.00 0.00 0.00 3.18
259 260 1.789523 AGGCCCGATAAGCTACTTCA 58.210 50.000 0.00 0.00 0.00 3.02
260 261 3.554544 GGTTAGGCCCGATAAGCTACTTC 60.555 52.174 0.00 0.00 0.00 3.01
261 262 2.367894 GGTTAGGCCCGATAAGCTACTT 59.632 50.000 0.00 0.00 0.00 2.24
262 263 1.969208 GGTTAGGCCCGATAAGCTACT 59.031 52.381 0.00 0.00 0.00 2.57
263 264 1.690352 TGGTTAGGCCCGATAAGCTAC 59.310 52.381 0.00 0.00 36.04 3.58
264 265 2.091098 TGGTTAGGCCCGATAAGCTA 57.909 50.000 0.00 0.00 36.04 3.32
265 266 1.209621 TTGGTTAGGCCCGATAAGCT 58.790 50.000 0.00 0.00 36.04 3.74
266 267 2.047002 TTTGGTTAGGCCCGATAAGC 57.953 50.000 0.00 1.86 36.04 3.09
267 268 2.357952 GCTTTTGGTTAGGCCCGATAAG 59.642 50.000 0.00 0.00 36.04 1.73
268 269 2.291024 TGCTTTTGGTTAGGCCCGATAA 60.291 45.455 0.00 0.00 36.04 1.75
269 270 1.282447 TGCTTTTGGTTAGGCCCGATA 59.718 47.619 0.00 0.00 36.04 2.92
270 271 0.039035 TGCTTTTGGTTAGGCCCGAT 59.961 50.000 0.00 0.00 36.04 4.18
271 272 0.891904 GTGCTTTTGGTTAGGCCCGA 60.892 55.000 0.00 0.00 36.04 5.14
272 273 1.584495 GTGCTTTTGGTTAGGCCCG 59.416 57.895 0.00 0.00 36.04 6.13
273 274 1.873270 CGGTGCTTTTGGTTAGGCCC 61.873 60.000 0.00 0.00 36.04 5.80
274 275 1.176619 ACGGTGCTTTTGGTTAGGCC 61.177 55.000 0.00 0.00 37.90 5.19
292 293 1.859080 GTTAAGACGCCCGATGATGAC 59.141 52.381 0.00 0.00 0.00 3.06
294 295 2.225068 AGTTAAGACGCCCGATGATG 57.775 50.000 0.00 0.00 0.00 3.07
305 306 7.792374 TTGCCATTGATGAGATAGTTAAGAC 57.208 36.000 0.00 0.00 0.00 3.01
315 316 8.125978 AGAAGTTTTTATTGCCATTGATGAGA 57.874 30.769 0.00 0.00 0.00 3.27
317 318 9.638239 GTAAGAAGTTTTTATTGCCATTGATGA 57.362 29.630 0.00 0.00 0.00 2.92
318 319 8.872845 GGTAAGAAGTTTTTATTGCCATTGATG 58.127 33.333 0.00 0.00 39.28 3.07
319 320 8.592809 TGGTAAGAAGTTTTTATTGCCATTGAT 58.407 29.630 1.25 0.00 42.71 2.57
320 321 7.957002 TGGTAAGAAGTTTTTATTGCCATTGA 58.043 30.769 1.25 0.00 42.71 2.57
322 323 7.962441 ACTGGTAAGAAGTTTTTATTGCCATT 58.038 30.769 5.22 0.00 45.17 3.16
324 325 6.969993 ACTGGTAAGAAGTTTTTATTGCCA 57.030 33.333 4.79 4.79 44.47 4.92
325 326 7.040271 TGGTACTGGTAAGAAGTTTTTATTGCC 60.040 37.037 0.00 0.00 39.72 4.52
326 327 7.878036 TGGTACTGGTAAGAAGTTTTTATTGC 58.122 34.615 0.00 0.00 0.00 3.56
340 352 4.780554 TCACTGGATTGATGGTACTGGTAA 59.219 41.667 0.00 0.00 0.00 2.85
350 362 1.386533 GCCTGGTCACTGGATTGATG 58.613 55.000 0.00 0.00 37.89 3.07
357 369 3.991051 ACGACGCCTGGTCACTGG 61.991 66.667 0.00 0.00 46.42 4.00
365 377 3.181967 GCTACAGCACGACGCCTG 61.182 66.667 12.84 12.84 44.04 4.85
367 379 3.181967 CAGCTACAGCACGACGCC 61.182 66.667 3.70 0.00 45.16 5.68
369 381 0.099613 ATCTCAGCTACAGCACGACG 59.900 55.000 3.70 0.00 45.16 5.12
371 383 0.457443 CCATCTCAGCTACAGCACGA 59.543 55.000 3.70 0.00 45.16 4.35
380 392 0.534412 CTGGTCGTTCCATCTCAGCT 59.466 55.000 3.00 0.00 46.12 4.24
381 393 1.086634 GCTGGTCGTTCCATCTCAGC 61.087 60.000 0.00 0.00 46.12 4.26
382 394 0.534412 AGCTGGTCGTTCCATCTCAG 59.466 55.000 0.00 0.00 46.12 3.35
383 395 2.671145 AGCTGGTCGTTCCATCTCA 58.329 52.632 0.00 0.00 46.12 3.27
385 412 1.513158 CGAGCTGGTCGTTCCATCT 59.487 57.895 20.08 5.71 46.12 2.90
400 427 4.880537 CTAGGTGCTGGCGGCGAG 62.881 72.222 12.98 7.72 45.43 5.03
403 430 0.601311 CTTATCTAGGTGCTGGCGGC 60.601 60.000 12.43 12.43 42.22 6.53
404 431 0.601311 GCTTATCTAGGTGCTGGCGG 60.601 60.000 0.00 0.00 0.00 6.13
421 448 7.939039 GCATCTATCTATCTATCTACTCCTGCT 59.061 40.741 0.00 0.00 0.00 4.24
422 449 7.174946 GGCATCTATCTATCTATCTACTCCTGC 59.825 44.444 0.00 0.00 0.00 4.85
423 450 7.665559 GGGCATCTATCTATCTATCTACTCCTG 59.334 44.444 0.00 0.00 0.00 3.86
424 451 7.202279 GGGGCATCTATCTATCTATCTACTCCT 60.202 44.444 0.00 0.00 0.00 3.69
425 452 6.946009 GGGGCATCTATCTATCTATCTACTCC 59.054 46.154 0.00 0.00 0.00 3.85
426 453 6.653320 CGGGGCATCTATCTATCTATCTACTC 59.347 46.154 0.00 0.00 0.00 2.59
427 454 6.466615 CCGGGGCATCTATCTATCTATCTACT 60.467 46.154 0.00 0.00 0.00 2.57
428 455 5.708230 CCGGGGCATCTATCTATCTATCTAC 59.292 48.000 0.00 0.00 0.00 2.59
429 456 5.372959 ACCGGGGCATCTATCTATCTATCTA 59.627 44.000 6.32 0.00 0.00 1.98
430 457 4.169068 ACCGGGGCATCTATCTATCTATCT 59.831 45.833 6.32 0.00 0.00 1.98
431 458 4.475345 ACCGGGGCATCTATCTATCTATC 58.525 47.826 6.32 0.00 0.00 2.08
432 459 4.544564 ACCGGGGCATCTATCTATCTAT 57.455 45.455 6.32 0.00 0.00 1.98
454 481 1.948104 CGCCGATGGTTATCCTTTCA 58.052 50.000 0.00 0.00 34.23 2.69
457 489 1.227853 GGCGCCGATGGTTATCCTT 60.228 57.895 12.58 0.00 34.23 3.36
483 515 2.882876 CACGCCACGGCTACTACT 59.117 61.111 6.48 0.00 39.32 2.57
484 516 2.884207 GCACGCCACGGCTACTAC 60.884 66.667 6.48 0.00 39.32 2.73
485 517 4.137872 GGCACGCCACGGCTACTA 62.138 66.667 6.48 0.00 39.32 1.82
514 546 4.519540 ACAATGCATTTCTGGTGGTAAC 57.480 40.909 9.83 0.00 0.00 2.50
516 548 5.336372 GCTTAACAATGCATTTCTGGTGGTA 60.336 40.000 9.83 0.00 0.00 3.25
517 549 4.561326 GCTTAACAATGCATTTCTGGTGGT 60.561 41.667 9.83 0.00 0.00 4.16
518 550 3.928375 GCTTAACAATGCATTTCTGGTGG 59.072 43.478 9.83 0.00 0.00 4.61
519 551 3.928375 GGCTTAACAATGCATTTCTGGTG 59.072 43.478 9.83 0.05 0.00 4.17
542 574 1.267533 ACAAATTCGCGTGGTTAACCC 59.732 47.619 21.97 11.99 34.29 4.11
572 604 0.819582 TAACCCGAACGGATGAGTCC 59.180 55.000 15.07 0.00 41.40 3.85
574 606 0.175073 GCTAACCCGAACGGATGAGT 59.825 55.000 15.07 1.02 37.50 3.41
577 616 4.120085 GGCTAACCCGAACGGATG 57.880 61.111 15.07 1.47 37.50 3.51
587 626 1.632948 GAGCGAAACCACGGCTAACC 61.633 60.000 0.00 0.00 0.00 2.85
621 661 1.067060 TCGGTAGAATCTGCCATCACG 59.933 52.381 17.31 3.20 35.99 4.35
659 719 4.192317 CGAGGGGATTCGATTCTCTTTTT 58.808 43.478 7.11 0.00 43.03 1.94
661 721 2.483889 GCGAGGGGATTCGATTCTCTTT 60.484 50.000 7.11 0.00 43.03 2.52
683 743 1.772836 ATCCGGTGGTAGTGGTACTC 58.227 55.000 0.00 0.00 0.00 2.59
685 745 4.470334 TTTTATCCGGTGGTAGTGGTAC 57.530 45.455 0.00 0.00 0.00 3.34
686 746 4.776837 TCTTTTTATCCGGTGGTAGTGGTA 59.223 41.667 0.00 0.00 0.00 3.25
687 747 3.583966 TCTTTTTATCCGGTGGTAGTGGT 59.416 43.478 0.00 0.00 0.00 4.16
688 748 4.210724 TCTTTTTATCCGGTGGTAGTGG 57.789 45.455 0.00 0.00 0.00 4.00
689 749 4.035208 GCATCTTTTTATCCGGTGGTAGTG 59.965 45.833 0.00 0.00 0.00 2.74
690 750 4.196971 GCATCTTTTTATCCGGTGGTAGT 58.803 43.478 0.00 0.00 0.00 2.73
691 751 3.564225 GGCATCTTTTTATCCGGTGGTAG 59.436 47.826 0.00 0.00 0.00 3.18
729 789 2.757099 CTGGTCCCAATGGCAGGC 60.757 66.667 0.00 0.00 0.00 4.85
765 825 1.445582 CCTCTGTCCCGTTGTACGC 60.446 63.158 0.00 0.00 40.91 4.42
805 867 3.594603 TCCGTGATTGAGAAGAACTCC 57.405 47.619 0.00 0.00 44.34 3.85
810 872 2.168521 GACCCATCCGTGATTGAGAAGA 59.831 50.000 0.00 0.00 0.00 2.87
824 886 1.143889 GAGAGGGAAATGGGACCCATC 59.856 57.143 26.70 15.79 44.40 3.51
887 949 2.430921 CGTGTGTCTCCGTGCTCC 60.431 66.667 0.00 0.00 0.00 4.70
892 954 1.857318 CTCTCTGCGTGTGTCTCCGT 61.857 60.000 0.00 0.00 0.00 4.69
904 966 1.724582 GGGTCTCTCGCTCTCTCTGC 61.725 65.000 0.00 0.00 0.00 4.26
1236 1298 1.556911 GGAGGATGCTTCTCACCTTCA 59.443 52.381 0.00 0.00 33.18 3.02
1335 1406 3.682292 AAACGGGCGGATCTGCTCC 62.682 63.158 25.27 21.69 41.07 4.70
1337 1408 2.125106 GAAACGGGCGGATCTGCT 60.125 61.111 25.27 5.66 34.52 4.24
1398 1531 2.791383 TCCGGCAGTTTCAAACATTG 57.209 45.000 2.41 0.00 0.00 2.82
1420 1553 9.622004 CGAGATTCTACTTTGTACAGTAAAGAA 57.378 33.333 11.79 12.11 38.26 2.52
1426 1559 4.463186 AGGCGAGATTCTACTTTGTACAGT 59.537 41.667 0.00 0.00 0.00 3.55
1427 1560 5.000012 AGGCGAGATTCTACTTTGTACAG 58.000 43.478 0.00 0.00 0.00 2.74
1429 1562 5.521544 CCTAGGCGAGATTCTACTTTGTAC 58.478 45.833 0.00 0.00 0.00 2.90
1435 1571 2.235016 CTGCCTAGGCGAGATTCTACT 58.765 52.381 28.28 0.00 45.51 2.57
1449 1585 4.023291 CCCTGAAAAATTAAGGCTGCCTA 58.977 43.478 23.69 7.77 31.13 3.93
1450 1586 2.833943 CCCTGAAAAATTAAGGCTGCCT 59.166 45.455 17.22 17.22 33.87 4.75
1451 1587 2.677902 GCCCTGAAAAATTAAGGCTGCC 60.678 50.000 11.65 11.65 37.42 4.85
1453 1589 2.566724 TGGCCCTGAAAAATTAAGGCTG 59.433 45.455 0.00 0.00 40.32 4.85
1454 1590 2.901291 TGGCCCTGAAAAATTAAGGCT 58.099 42.857 0.00 0.00 40.32 4.58
1455 1591 3.694043 TTGGCCCTGAAAAATTAAGGC 57.306 42.857 0.00 0.00 39.73 4.35
1485 1621 2.902846 CCAACGGACGGCCACAAA 60.903 61.111 8.76 0.00 0.00 2.83
1608 2129 2.019984 AGCTTTTAGCATGGCTACAGC 58.980 47.619 15.81 15.81 45.56 4.40
1616 2137 3.442977 AGCAAGGAAGAGCTTTTAGCATG 59.557 43.478 1.09 0.00 45.56 4.06
1722 2243 4.619863 GCCGGGAGCGACAAATATATCTTA 60.620 45.833 2.18 0.00 0.00 2.10
1742 2282 2.083774 TGCAGATTTGGAACTAAGCCG 58.916 47.619 0.00 0.00 0.00 5.52
1769 2309 1.068588 GTGTCAAAGGGGCCAACTTTC 59.931 52.381 18.58 11.18 36.09 2.62
1775 2316 1.118838 CAAAAGTGTCAAAGGGGCCA 58.881 50.000 4.39 0.00 0.00 5.36
1779 2320 3.860641 AGCAAACAAAAGTGTCAAAGGG 58.139 40.909 0.00 0.00 36.80 3.95
1802 2343 7.274686 CCCCACATAAACAAAAATTTACTAGCG 59.725 37.037 0.00 0.00 0.00 4.26
1803 2344 7.064134 GCCCCACATAAACAAAAATTTACTAGC 59.936 37.037 0.00 0.00 0.00 3.42
1804 2345 8.311109 AGCCCCACATAAACAAAAATTTACTAG 58.689 33.333 0.00 0.00 0.00 2.57
1805 2346 8.196378 AGCCCCACATAAACAAAAATTTACTA 57.804 30.769 0.00 0.00 0.00 1.82
1806 2347 7.073457 AGCCCCACATAAACAAAAATTTACT 57.927 32.000 0.00 0.00 0.00 2.24
1807 2348 7.547722 CCTAGCCCCACATAAACAAAAATTTAC 59.452 37.037 0.00 0.00 0.00 2.01
1810 2351 5.782845 TCCTAGCCCCACATAAACAAAAATT 59.217 36.000 0.00 0.00 0.00 1.82
1813 2354 4.390129 TCCTAGCCCCACATAAACAAAA 57.610 40.909 0.00 0.00 0.00 2.44
1830 2371 4.263727 TGGTGATTTTGCTAGGCTTTCCTA 60.264 41.667 0.00 0.00 43.91 2.94
1832 2373 2.825532 TGGTGATTTTGCTAGGCTTTCC 59.174 45.455 0.00 0.00 0.00 3.13
1834 2375 4.347607 AGATGGTGATTTTGCTAGGCTTT 58.652 39.130 0.00 0.00 0.00 3.51
1835 2376 3.973425 AGATGGTGATTTTGCTAGGCTT 58.027 40.909 0.00 0.00 0.00 4.35
1836 2377 3.659183 AGATGGTGATTTTGCTAGGCT 57.341 42.857 0.00 0.00 0.00 4.58
1838 2379 4.272489 TGGAAGATGGTGATTTTGCTAGG 58.728 43.478 0.00 0.00 0.00 3.02
1841 2382 5.750352 AAATGGAAGATGGTGATTTTGCT 57.250 34.783 0.00 0.00 0.00 3.91
1901 2454 1.608055 TGATCTGGCACCAAACACAG 58.392 50.000 0.00 0.00 0.00 3.66
1914 2467 6.506500 ACTGTTTATTGAAGCCTTGATCTG 57.493 37.500 0.00 0.00 0.00 2.90
2005 2559 1.404717 CGGTAGAGATGTGCAGTTGCT 60.405 52.381 5.62 0.00 42.66 3.91
2050 2604 2.695666 ACCAGCAAGCGAGTATGATACT 59.304 45.455 4.50 4.50 42.86 2.12
2067 2621 3.958147 ATCACGCGCCTTCCACCAG 62.958 63.158 5.73 0.00 0.00 4.00
2078 2632 2.202919 TGGCAGATCCATCACGCG 60.203 61.111 3.53 3.53 40.72 6.01
2109 2663 4.077188 GCAGCTCGCAACGTGTCC 62.077 66.667 0.00 0.00 41.79 4.02
2119 2673 0.108424 AGCTAAGTCAAGGCAGCTCG 60.108 55.000 0.00 0.00 40.25 5.03
2135 2707 2.203907 AGGGCAGTGGAGTGAGCT 60.204 61.111 0.00 0.00 0.00 4.09
2136 2708 2.046507 CAGGGCAGTGGAGTGAGC 60.047 66.667 0.00 0.00 0.00 4.26
2137 2709 2.667418 CCAGGGCAGTGGAGTGAG 59.333 66.667 0.00 0.00 40.44 3.51
2138 2710 2.395180 TACCCAGGGCAGTGGAGTGA 62.395 60.000 4.91 0.00 40.44 3.41
2139 2711 1.903877 CTACCCAGGGCAGTGGAGTG 61.904 65.000 4.91 0.00 40.44 3.51
2140 2712 1.613630 CTACCCAGGGCAGTGGAGT 60.614 63.158 4.91 5.80 40.44 3.85
2141 2713 2.370445 CCTACCCAGGGCAGTGGAG 61.370 68.421 4.91 0.00 40.44 3.86
2142 2714 2.285368 CCTACCCAGGGCAGTGGA 60.285 66.667 4.91 0.00 40.44 4.02
2149 2721 1.384502 TGGATCTGCCTACCCAGGG 60.385 63.158 2.85 2.85 42.88 4.45
2150 2722 0.399091 TCTGGATCTGCCTACCCAGG 60.399 60.000 0.00 0.00 44.66 4.45
2151 2723 0.755686 GTCTGGATCTGCCTACCCAG 59.244 60.000 0.00 0.00 45.63 4.45
2152 2724 0.691078 GGTCTGGATCTGCCTACCCA 60.691 60.000 0.00 0.00 37.40 4.51
2235 2807 1.020437 GGCAATCTCACAAGGCTAGC 58.980 55.000 6.04 6.04 0.00 3.42
2279 2851 1.197721 CAAGAAACAGGACACGCATCC 59.802 52.381 0.00 0.00 39.28 3.51
2322 2895 6.363357 CGTCCCAATCAAAGAAGAAACAAATC 59.637 38.462 0.00 0.00 0.00 2.17
2380 2953 0.250467 CACCCAATCCTATCCCAGCG 60.250 60.000 0.00 0.00 0.00 5.18
2406 2979 0.464013 CATCTGGGGAAGAGCAGCAG 60.464 60.000 0.00 0.00 38.67 4.24
2416 2989 0.616395 TGCCGTCTTACATCTGGGGA 60.616 55.000 0.00 0.00 0.00 4.81
2457 3113 1.740585 CCTAGAGACTGACACACGGAG 59.259 57.143 0.00 0.00 0.00 4.63
2460 3116 3.597255 TCTACCTAGAGACTGACACACG 58.403 50.000 0.00 0.00 0.00 4.49
2461 3117 4.577283 GGATCTACCTAGAGACTGACACAC 59.423 50.000 0.00 0.00 35.50 3.82
2513 3194 8.658499 ATTAGATAACCTCGGTTCAATTGTAC 57.342 34.615 4.30 5.97 39.31 2.90
2560 3241 5.886960 AGCCAACTTTTCATTACAGCTAG 57.113 39.130 0.00 0.00 0.00 3.42
2630 3311 7.422399 TGCTCCTGTTCACAATAAAAGTTAAC 58.578 34.615 0.00 0.00 0.00 2.01
2829 3652 1.609208 TGGCTCCAAGCAAGAAAGAC 58.391 50.000 0.86 0.00 44.75 3.01
3027 3850 4.278919 TCACCGTAGTACATCTTGAACACA 59.721 41.667 0.38 0.00 0.00 3.72
3168 3991 2.035066 CCTCTCAACTTTGCCAACAAGG 59.965 50.000 0.00 0.00 38.75 3.61
3231 4054 4.133078 CCAAAAGCTGAGAAGTGAGAAGT 58.867 43.478 0.00 0.00 0.00 3.01
3344 4194 0.586319 CACCGACGTTGTCAGCAATT 59.414 50.000 1.30 0.00 36.92 2.32
3386 4236 4.703379 ACCAAAGAGATCTGATCCCATC 57.297 45.455 13.83 5.75 0.00 3.51
3515 4365 1.345089 AGCAAGCAAACAATGATGCCA 59.655 42.857 10.95 0.00 43.57 4.92
3542 4392 3.904136 AAGAAATCAGTCGCAAACAGG 57.096 42.857 0.00 0.00 0.00 4.00
3545 4395 5.095691 TCTCAAAGAAATCAGTCGCAAAC 57.904 39.130 0.00 0.00 0.00 2.93
3551 4401 5.647225 AGCCTTGATCTCAAAGAAATCAGTC 59.353 40.000 0.00 0.00 35.15 3.51
3650 4500 0.463474 GGAGAGCCAACCAGCTGATC 60.463 60.000 17.39 0.00 45.15 2.92
3743 4593 7.075121 CGAGTACAACATTGCAAATTGAGTAA 58.925 34.615 25.44 10.69 0.00 2.24
3746 4596 4.321745 GCGAGTACAACATTGCAAATTGAG 59.678 41.667 25.44 12.40 0.00 3.02
3748 4598 4.229096 AGCGAGTACAACATTGCAAATTG 58.771 39.130 19.82 19.82 0.00 2.32
3751 4601 3.563808 AGAAGCGAGTACAACATTGCAAA 59.436 39.130 1.71 0.00 0.00 3.68
3768 4620 4.450053 ACCAAGAGAGCATAATCAGAAGC 58.550 43.478 0.00 0.00 0.00 3.86
3861 4725 5.011125 CCTGTAGGCATTGCTAGTGTAGTAT 59.989 44.000 8.82 0.00 0.00 2.12
3915 4779 9.638239 GACACCATAACACAAAATATGAACAAT 57.362 29.630 0.00 0.00 32.43 2.71
3916 4780 8.855110 AGACACCATAACACAAAATATGAACAA 58.145 29.630 0.00 0.00 32.43 2.83
3923 4787 7.558444 GGGGATAAGACACCATAACACAAAATA 59.442 37.037 0.00 0.00 32.85 1.40
3927 4791 4.324719 GGGGGATAAGACACCATAACACAA 60.325 45.833 0.00 0.00 34.56 3.33
3929 4793 3.201266 TGGGGGATAAGACACCATAACAC 59.799 47.826 0.00 0.00 34.56 3.32
3931 4795 4.513406 TTGGGGGATAAGACACCATAAC 57.487 45.455 0.00 0.00 34.56 1.89
3933 4797 5.914716 ACTAATTGGGGGATAAGACACCATA 59.085 40.000 0.00 0.00 34.56 2.74
3939 4803 7.803131 ACTAGAAACTAATTGGGGGATAAGAC 58.197 38.462 0.00 0.00 0.00 3.01
4095 4986 4.323485 GGGATGATGACTGACTTGTAACCA 60.323 45.833 0.00 0.00 0.00 3.67
4455 5347 7.029563 CCTAATTCCGCAATAATCAAATAGCC 58.970 38.462 0.00 0.00 0.00 3.93
4488 5380 3.153919 GGCTTTCACTACAAACCCATCA 58.846 45.455 0.00 0.00 0.00 3.07
4634 5526 3.041211 CACCTTGGGAGATAGGACATCA 58.959 50.000 0.00 0.00 35.45 3.07
4910 5802 2.112297 GACAGGGTTTCCACGCCA 59.888 61.111 0.00 0.00 36.49 5.69
4961 5853 2.425102 GGGAGAGCACTAGGATACCTGT 60.425 54.545 0.00 0.00 34.61 4.00
4981 5874 0.914417 TACTCCCCAGGAAGCAAGGG 60.914 60.000 0.00 0.00 42.44 3.95
4986 5879 4.482431 AGGTACTCCCCAGGAAGC 57.518 61.111 0.00 0.00 0.00 3.86
4994 5887 9.041572 AGAATAAACGGATTCAGAGGTACTCCC 62.042 44.444 8.94 0.00 43.69 4.30
4995 5888 6.183360 AGAATAAACGGATTCAGAGGTACTCC 60.183 42.308 8.94 0.00 43.69 3.85
5041 5934 2.223923 GCAGAGATGGCGATCTGTAAGT 60.224 50.000 16.66 0.00 43.94 2.24
5142 6035 7.999679 TGGCTCATCAATATAAAGTCAAAAGG 58.000 34.615 0.00 0.00 0.00 3.11
5175 6068 8.484641 TGATGACAAAGTTAAGAGACATGATC 57.515 34.615 0.00 0.00 0.00 2.92
5187 6080 5.758296 AGCGAAGAAGTTGATGACAAAGTTA 59.242 36.000 0.00 0.00 37.77 2.24
5189 6082 4.130118 AGCGAAGAAGTTGATGACAAAGT 58.870 39.130 0.00 0.00 37.77 2.66
5190 6083 4.739046 AGCGAAGAAGTTGATGACAAAG 57.261 40.909 0.00 0.00 37.77 2.77
5191 6084 5.297547 AGTAGCGAAGAAGTTGATGACAAA 58.702 37.500 0.00 0.00 37.77 2.83
5192 6085 4.883083 AGTAGCGAAGAAGTTGATGACAA 58.117 39.130 0.00 0.00 0.00 3.18
5357 6250 3.148279 AGGGACTCGACGGCCATC 61.148 66.667 2.24 0.00 0.00 3.51
5450 6350 2.099263 CGTGATGGTGTCCGTAGATTCT 59.901 50.000 0.00 0.00 0.00 2.40
5701 6618 5.696260 TCAAACATTATCGTCGTCATCAC 57.304 39.130 0.00 0.00 0.00 3.06
5734 6651 6.622833 TGCAACAATCGTCATGATATCATT 57.377 33.333 15.74 0.00 35.84 2.57
5765 6682 5.615925 AAGAATAAAGACTCGGCATAGGT 57.384 39.130 0.00 0.00 0.00 3.08
5769 6686 6.203723 GCTGAATAAGAATAAAGACTCGGCAT 59.796 38.462 0.00 0.00 34.73 4.40
5774 6691 9.762933 AGATCAGCTGAATAAGAATAAAGACTC 57.237 33.333 22.50 7.59 0.00 3.36
5796 6714 1.151668 GTCACAGGTGCACACAGATC 58.848 55.000 20.43 0.00 0.00 2.75
5842 6763 8.629158 ACATTCTGAACTAGCACTTCTATCTAG 58.371 37.037 0.00 0.00 36.70 2.43
5854 6775 7.044798 AGAACATTCCTACATTCTGAACTAGC 58.955 38.462 0.00 0.00 30.26 3.42
5862 6783 7.551974 CACAAGATCAGAACATTCCTACATTCT 59.448 37.037 0.00 0.00 31.53 2.40
5868 6789 6.358974 TCACACAAGATCAGAACATTCCTA 57.641 37.500 0.00 0.00 0.00 2.94
5889 6810 3.324268 TGCAGAAATTTCCAGGCATTTCA 59.676 39.130 19.75 3.85 40.48 2.69
5937 6860 4.457466 GGAAACCAACTACTTCACAGGAA 58.543 43.478 0.00 0.00 0.00 3.36
5961 6886 3.006217 GCTTTTCTGAACCAAGAGGCAAT 59.994 43.478 6.12 0.00 39.06 3.56
5962 6887 2.362077 GCTTTTCTGAACCAAGAGGCAA 59.638 45.455 6.12 0.00 39.06 4.52
5972 6903 6.809630 AGTAGGAATGAAGCTTTTCTGAAC 57.190 37.500 0.00 2.24 0.00 3.18
6007 6938 6.549763 GCCATGTTGTTTTGGATGGGAACA 62.550 45.833 0.00 0.00 36.61 3.18
6008 6939 3.663025 CCATGTTGTTTTGGATGGGAAC 58.337 45.455 0.00 0.00 34.81 3.62
6020 9363 0.403271 AGCCTCAGAGCCATGTTGTT 59.597 50.000 0.00 0.00 0.00 2.83
6021 9364 0.322277 CAGCCTCAGAGCCATGTTGT 60.322 55.000 0.00 0.00 0.00 3.32
6027 9370 0.252239 TACCTTCAGCCTCAGAGCCA 60.252 55.000 0.00 0.00 0.00 4.75
6060 9404 4.582701 TGTAATGGTGGCAGACAAAAAG 57.417 40.909 0.00 0.00 0.00 2.27
6091 9435 2.572290 CTGGTTTCTTCCGAGTGGTTT 58.428 47.619 0.00 0.00 36.30 3.27
6100 9444 6.151312 GGAATAACTCTTTCCTGGTTTCTTCC 59.849 42.308 0.00 0.00 39.67 3.46
6132 9477 7.084486 GGGAAATTGACATAGTGAAACAAGAC 58.916 38.462 0.00 0.00 41.43 3.01
6147 9492 4.242336 AGAGGATGAAGGGGAAATTGAC 57.758 45.455 0.00 0.00 0.00 3.18
6160 9505 8.078060 TGTGTGATTAGATTGTAAGAGGATGA 57.922 34.615 0.00 0.00 0.00 2.92
6163 9508 7.334421 GCTTTGTGTGATTAGATTGTAAGAGGA 59.666 37.037 0.00 0.00 0.00 3.71
6164 9509 7.414540 GGCTTTGTGTGATTAGATTGTAAGAGG 60.415 40.741 0.00 0.00 0.00 3.69
6167 9512 7.023575 GTGGCTTTGTGTGATTAGATTGTAAG 58.976 38.462 0.00 0.00 0.00 2.34
6168 9513 6.488344 TGTGGCTTTGTGTGATTAGATTGTAA 59.512 34.615 0.00 0.00 0.00 2.41
6170 9515 4.826733 TGTGGCTTTGTGTGATTAGATTGT 59.173 37.500 0.00 0.00 0.00 2.71
6171 9516 5.156355 GTGTGGCTTTGTGTGATTAGATTG 58.844 41.667 0.00 0.00 0.00 2.67
6172 9517 4.826733 TGTGTGGCTTTGTGTGATTAGATT 59.173 37.500 0.00 0.00 0.00 2.40
6220 9567 1.284491 TGCTAAGCATGTCCATCCCAA 59.716 47.619 0.00 0.00 31.71 4.12
6222 9569 1.952296 CTTGCTAAGCATGTCCATCCC 59.048 52.381 0.00 0.00 38.76 3.85
6254 9606 1.200519 TGCTGGTATAGGTGGTGGTC 58.799 55.000 0.00 0.00 0.00 4.02
6260 9612 3.270877 GGTGTTCTTGCTGGTATAGGTG 58.729 50.000 0.00 0.00 0.00 4.00
6271 9623 3.304726 GCTAGAGGTTTTGGTGTTCTTGC 60.305 47.826 0.00 0.00 31.66 4.01
6315 9673 3.047280 TGTTCGTCCACATGCCGC 61.047 61.111 0.00 0.00 0.00 6.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.