Multiple sequence alignment - TraesCS7A01G140900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G140900 chr7A 100.000 3481 0 0 1 3481 92393441 92396921 0.000000e+00 6429.0
1 TraesCS7A01G140900 chr7A 89.351 1850 115 37 708 2535 91925163 91923374 0.000000e+00 2250.0
2 TraesCS7A01G140900 chr7A 80.807 1735 246 51 705 2408 92800145 92801823 0.000000e+00 1279.0
3 TraesCS7A01G140900 chr7A 83.909 1274 156 27 1297 2535 91919441 91918182 0.000000e+00 1171.0
4 TraesCS7A01G140900 chr7A 84.326 319 46 4 339 656 92799477 92799792 3.370000e-80 309.0
5 TraesCS7A01G140900 chr7A 84.211 323 32 8 6 310 92799074 92799395 2.630000e-76 296.0
6 TraesCS7A01G140900 chr7A 87.295 244 29 2 1385 1627 92425633 92425875 9.520000e-71 278.0
7 TraesCS7A01G140900 chr7A 80.858 303 50 4 946 1242 91919844 91919544 7.510000e-57 231.0
8 TraesCS7A01G140900 chr7A 90.000 150 9 4 2810 2958 91923226 91923082 4.590000e-44 189.0
9 TraesCS7A01G140900 chr7A 92.857 98 6 1 2538 2635 91923325 91923229 1.300000e-29 141.0
10 TraesCS7A01G140900 chr7D 92.927 2545 124 28 6 2532 90619286 90621792 0.000000e+00 3651.0
11 TraesCS7A01G140900 chr7D 88.827 895 66 22 1662 2538 90596219 90595341 0.000000e+00 1068.0
12 TraesCS7A01G140900 chr7D 84.418 937 112 20 699 1627 90628448 90629358 0.000000e+00 891.0
13 TraesCS7A01G140900 chr7D 87.534 738 77 7 1806 2535 90585710 90584980 0.000000e+00 839.0
14 TraesCS7A01G140900 chr7D 87.089 426 41 7 1297 1721 90586274 90585862 1.460000e-128 470.0
15 TraesCS7A01G140900 chr7D 86.256 422 50 5 1803 2216 90616480 90616901 5.300000e-123 451.0
16 TraesCS7A01G140900 chr7D 94.792 288 13 2 3016 3303 115039100 115038815 6.850000e-122 448.0
17 TraesCS7A01G140900 chr7D 92.434 304 20 3 3001 3303 121037121 121036820 6.900000e-117 431.0
18 TraesCS7A01G140900 chr7D 94.961 258 5 3 1335 1587 90596508 90596254 7.000000e-107 398.0
19 TraesCS7A01G140900 chr7D 84.810 316 44 4 342 656 90625393 90625705 7.250000e-82 315.0
20 TraesCS7A01G140900 chr7D 88.696 230 12 4 2802 3019 90595206 90594979 5.730000e-68 268.0
21 TraesCS7A01G140900 chr7D 82.716 324 35 10 6 310 90624987 90625308 5.730000e-68 268.0
22 TraesCS7A01G140900 chr7D 80.656 305 50 5 946 1244 90586678 90586377 9.720000e-56 228.0
23 TraesCS7A01G140900 chr7D 84.211 228 16 8 2802 3018 90621936 90622154 1.640000e-48 204.0
24 TraesCS7A01G140900 chr7D 95.050 101 2 1 2538 2635 90621843 90621943 4.650000e-34 156.0
25 TraesCS7A01G140900 chr7D 87.059 85 9 2 976 1059 90596937 90596854 1.030000e-15 95.3
26 TraesCS7A01G140900 chr7B 90.816 1851 116 25 695 2532 41532130 41533939 0.000000e+00 2427.0
27 TraesCS7A01G140900 chr7B 85.220 318 44 3 339 656 41541712 41542026 1.210000e-84 324.0
28 TraesCS7A01G140900 chr7B 95.181 166 8 0 2636 2801 56995332 56995167 2.660000e-66 263.0
29 TraesCS7A01G140900 chr7B 87.931 232 10 8 2802 3019 41534084 41534311 1.240000e-64 257.0
30 TraesCS7A01G140900 chr7B 90.964 166 15 0 2636 2801 733134918 733134753 1.260000e-54 224.0
31 TraesCS7A01G140900 chr7B 85.870 184 21 3 6 185 41541028 41541210 1.280000e-44 191.0
32 TraesCS7A01G140900 chr7B 94.059 101 3 1 2538 2635 41533991 41534091 2.160000e-32 150.0
33 TraesCS7A01G140900 chr7B 87.778 90 9 2 222 310 41541542 41541630 1.710000e-18 104.0
34 TraesCS7A01G140900 chr1D 90.725 345 17 4 3016 3345 213338283 213337939 2.470000e-121 446.0
35 TraesCS7A01G140900 chr1D 94.774 287 14 1 3018 3303 249020958 249021244 2.470000e-121 446.0
36 TraesCS7A01G140900 chr1D 92.771 166 12 0 2636 2801 37950042 37949877 1.250000e-59 241.0
37 TraesCS7A01G140900 chr1D 92.121 165 7 6 3319 3481 259263479 259263639 9.720000e-56 228.0
38 TraesCS7A01G140900 chr5A 94.444 288 16 0 3016 3303 559860246 559859959 8.870000e-121 444.0
39 TraesCS7A01G140900 chr5A 94.118 153 6 3 3331 3481 304271585 304271434 2.700000e-56 230.0
40 TraesCS7A01G140900 chr3D 94.406 286 16 0 3018 3303 165464148 165463863 1.150000e-119 440.0
41 TraesCS7A01G140900 chr2D 90.854 328 29 1 3018 3345 170816685 170816359 4.120000e-119 438.0
42 TraesCS7A01G140900 chr2D 89.634 328 29 4 3018 3345 406145807 406145485 2.500000e-111 412.0
43 TraesCS7A01G140900 chr6A 89.286 336 30 6 3014 3346 22757962 22758294 1.930000e-112 416.0
44 TraesCS7A01G140900 chr6A 97.163 141 4 0 3341 3481 104949019 104949159 4.490000e-59 239.0
45 TraesCS7A01G140900 chr5B 93.976 166 9 1 2636 2801 477080039 477079875 2.070000e-62 250.0
46 TraesCS7A01G140900 chr5B 95.302 149 6 1 3333 3481 106965119 106965266 5.810000e-58 235.0
47 TraesCS7A01G140900 chr5B 92.216 167 10 3 2636 2802 538043010 538043173 2.090000e-57 233.0
48 TraesCS7A01G140900 chrUn 92.727 165 12 0 2637 2801 28418473 28418309 4.490000e-59 239.0
49 TraesCS7A01G140900 chr4D 94.737 152 4 4 3330 3481 421502904 421503051 2.090000e-57 233.0
50 TraesCS7A01G140900 chr4D 91.515 165 8 6 3319 3481 8056442 8056602 4.520000e-54 222.0
51 TraesCS7A01G140900 chr3A 91.617 167 14 0 2635 2801 215966215 215966381 7.510000e-57 231.0
52 TraesCS7A01G140900 chr3A 94.079 152 8 1 3331 3481 518333429 518333580 2.700000e-56 230.0
53 TraesCS7A01G140900 chr3A 91.018 167 15 0 2636 2802 564395057 564394891 3.500000e-55 226.0
54 TraesCS7A01G140900 chr2A 97.059 136 4 0 3346 3481 691292263 691292128 2.700000e-56 230.0
55 TraesCS7A01G140900 chr5D 91.018 167 15 0 2637 2803 372555320 372555154 3.500000e-55 226.0
56 TraesCS7A01G140900 chr4A 92.073 164 8 5 3319 3481 129249469 129249628 3.500000e-55 226.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G140900 chr7A 92393441 92396921 3480 False 6429.000000 6429 100.000000 1 3481 1 chr7A.!!$F1 3480
1 TraesCS7A01G140900 chr7A 91918182 91925163 6981 True 796.400000 2250 87.395000 708 2958 5 chr7A.!!$R1 2250
2 TraesCS7A01G140900 chr7A 92799074 92801823 2749 False 628.000000 1279 83.114667 6 2408 3 chr7A.!!$F3 2402
3 TraesCS7A01G140900 chr7D 90616480 90629358 12878 False 848.000000 3651 87.198286 6 3018 7 chr7D.!!$F1 3012
4 TraesCS7A01G140900 chr7D 90584980 90586678 1698 True 512.333333 839 85.093000 946 2535 3 chr7D.!!$R3 1589
5 TraesCS7A01G140900 chr7D 90594979 90596937 1958 True 457.325000 1068 89.885750 976 3019 4 chr7D.!!$R4 2043
6 TraesCS7A01G140900 chr7B 41532130 41534311 2181 False 944.666667 2427 90.935333 695 3019 3 chr7B.!!$F1 2324
7 TraesCS7A01G140900 chr7B 41541028 41542026 998 False 206.333333 324 86.289333 6 656 3 chr7B.!!$F2 650

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
979 4169 0.462225 CAGAGCACCAGGATCAGCAG 60.462 60.0 0.0 0.0 33.23 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2640 6104 0.100682 CAGCTCATGCATGGCTTCAC 59.899 55.0 28.99 13.81 42.74 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 2829 6.709397 TGATCCTCATGTAAATCAAGCATCTC 59.291 38.462 0.00 0.00 0.00 2.75
30 2832 4.129380 TCATGTAAATCAAGCATCTCGGG 58.871 43.478 0.00 0.00 0.00 5.14
138 2940 8.985315 TCAGAATTATTCAATGGCTACTCATT 57.015 30.769 7.74 0.00 37.81 2.57
219 3041 2.704572 CTGAAAGGAGGATGTGTGGTC 58.295 52.381 0.00 0.00 0.00 4.02
220 3042 2.304180 CTGAAAGGAGGATGTGTGGTCT 59.696 50.000 0.00 0.00 0.00 3.85
224 3046 4.494091 AAGGAGGATGTGTGGTCTATTG 57.506 45.455 0.00 0.00 0.00 1.90
263 3086 0.682209 TAGAGGTACAGCCGGTCACC 60.682 60.000 1.90 5.53 43.70 4.02
330 3195 4.156455 ACTTCTGCTTTTCTTCCAGTGA 57.844 40.909 0.00 0.00 0.00 3.41
338 3203 2.175878 TTCTTCCAGTGAGAGCTTGC 57.824 50.000 0.00 0.00 0.00 4.01
387 3263 3.281727 TTGGCTCTATTCCATGTCCAC 57.718 47.619 0.00 0.00 32.92 4.02
466 3343 9.918630 AAAGAATTGATCAGGACAAACTTAATG 57.081 29.630 0.00 0.00 32.59 1.90
493 3370 2.750350 CCCAGTTCTCCAAGGCGT 59.250 61.111 0.00 0.00 0.00 5.68
539 3416 2.757077 GCTGTTACCAGGGGCAGT 59.243 61.111 8.40 0.00 39.22 4.40
596 3473 0.968901 ATCTCGGAACAGGCCACGTA 60.969 55.000 5.01 0.00 0.00 3.57
656 3533 1.116536 TCCTGTACGCCAGTCACCAA 61.117 55.000 2.45 0.00 39.74 3.67
681 3826 7.906327 ACTACCAATTGGCAATTAGTGAAAAT 58.094 30.769 26.99 10.21 39.32 1.82
690 3835 9.606631 TTGGCAATTAGTGAAAATTACAAACTT 57.393 25.926 0.00 0.00 29.43 2.66
692 3837 8.009409 GGCAATTAGTGAAAATTACAAACTTGC 58.991 33.333 0.00 0.00 0.00 4.01
696 3841 9.691362 ATTAGTGAAAATTACAAACTTGCGAAT 57.309 25.926 0.00 0.00 0.00 3.34
880 4064 9.599866 TCCTTACTTATTGATGACAATGTGTAG 57.400 33.333 0.00 0.00 44.97 2.74
952 4137 1.532868 CCTTGAAGAGAGCCAACAACG 59.467 52.381 0.00 0.00 0.00 4.10
979 4169 0.462225 CAGAGCACCAGGATCAGCAG 60.462 60.000 0.00 0.00 33.23 4.24
1360 4657 1.139654 GCATCAGCCTATGTGACCAGA 59.860 52.381 0.00 0.00 33.58 3.86
1639 4944 8.561536 TTTCAGGTAATCTATCAGGGATACAA 57.438 34.615 0.00 0.00 39.74 2.41
1640 4945 8.742125 TTCAGGTAATCTATCAGGGATACAAT 57.258 34.615 0.00 0.00 39.74 2.71
1641 4946 9.837681 TTCAGGTAATCTATCAGGGATACAATA 57.162 33.333 0.00 0.00 39.74 1.90
1650 4955 9.170890 TCTATCAGGGATACAATATTTTCTGGT 57.829 33.333 0.00 0.00 39.74 4.00
1653 4958 8.331931 TCAGGGATACAATATTTTCTGGTACT 57.668 34.615 0.00 0.00 39.74 2.73
1654 4959 8.778059 TCAGGGATACAATATTTTCTGGTACTT 58.222 33.333 0.00 0.00 39.74 2.24
1655 4960 9.408648 CAGGGATACAATATTTTCTGGTACTTT 57.591 33.333 0.00 0.00 39.74 2.66
1674 4979 8.130469 GGTACTTTTGTTTAAACGGATCTTTCA 58.870 33.333 13.45 0.00 0.00 2.69
1699 5006 8.798153 CATTGTTGTCTGTTTTGTAGAAAAGAC 58.202 33.333 9.26 9.26 31.57 3.01
1703 5010 7.316544 TGTCTGTTTTGTAGAAAAGACTTCC 57.683 36.000 14.71 0.00 31.85 3.46
1733 5040 9.534565 GCTTATTTATGTCTTGAGTGATGTAGA 57.465 33.333 0.00 0.00 0.00 2.59
1744 5108 4.400567 TGAGTGATGTAGACTGACATGGAG 59.599 45.833 0.00 0.00 40.18 3.86
1745 5109 4.348486 AGTGATGTAGACTGACATGGAGT 58.652 43.478 0.00 0.00 40.18 3.85
1767 5142 8.555361 GGAGTCATGAGCTACAGAAATAAAATC 58.445 37.037 0.00 0.00 0.00 2.17
1791 5178 8.234136 TCGACATTAGTAATTGACTGGACTAT 57.766 34.615 0.00 0.00 39.39 2.12
1792 5185 8.692710 TCGACATTAGTAATTGACTGGACTATT 58.307 33.333 0.00 0.00 39.39 1.73
1795 5188 8.893727 ACATTAGTAATTGACTGGACTATTTGC 58.106 33.333 0.00 0.00 39.39 3.68
1799 5192 2.831685 TGACTGGACTATTTGCGTGT 57.168 45.000 0.00 0.00 0.00 4.49
1804 5197 5.121611 TGACTGGACTATTTGCGTGTTATTG 59.878 40.000 0.00 0.00 0.00 1.90
1813 5206 1.210722 TGCGTGTTATTGGCAGGGATA 59.789 47.619 0.00 0.00 32.07 2.59
1818 5211 5.547465 CGTGTTATTGGCAGGGATAATCTA 58.453 41.667 0.00 0.00 0.00 1.98
1827 5220 6.025539 TGGCAGGGATAATCTACATGAGTAT 58.974 40.000 0.00 0.00 38.48 2.12
1852 5245 5.693104 GCATTGAAGTGCAAGAGAATCAAAA 59.307 36.000 0.00 0.00 44.43 2.44
1914 5307 6.003326 TGATGAAGACTGCCTTGTTAATCAA 58.997 36.000 0.00 0.00 34.68 2.57
2049 5442 0.032815 TCATGGACAAAGACGTCGCA 59.967 50.000 10.46 0.00 36.73 5.10
2216 5619 2.151202 TGACTTTCGCCTGACCATTTC 58.849 47.619 0.00 0.00 0.00 2.17
2217 5620 2.224523 TGACTTTCGCCTGACCATTTCT 60.225 45.455 0.00 0.00 0.00 2.52
2218 5621 2.416893 GACTTTCGCCTGACCATTTCTC 59.583 50.000 0.00 0.00 0.00 2.87
2219 5622 1.394917 CTTTCGCCTGACCATTTCTCG 59.605 52.381 0.00 0.00 0.00 4.04
2220 5623 0.320374 TTCGCCTGACCATTTCTCGT 59.680 50.000 0.00 0.00 0.00 4.18
2221 5624 0.389817 TCGCCTGACCATTTCTCGTG 60.390 55.000 0.00 0.00 0.00 4.35
2222 5625 1.361668 CGCCTGACCATTTCTCGTGG 61.362 60.000 0.00 0.00 42.55 4.94
2254 5657 2.698855 ATGACCAACGGGATCTTCAG 57.301 50.000 0.00 0.00 38.05 3.02
2342 5750 1.043816 TGGATCCCGAGCAAGAGATC 58.956 55.000 9.90 0.00 35.45 2.75
2376 5784 5.426504 CTCATCTGTTAAGTGAGGAGCAAT 58.573 41.667 6.43 0.00 35.00 3.56
2496 5908 8.625651 TGAAGATCTAAGTAAGATGACTGTAGC 58.374 37.037 0.00 0.00 45.35 3.58
2535 5950 8.021898 ACCCATGGAAAGTAAATAATTGATGG 57.978 34.615 15.22 0.00 0.00 3.51
2536 5951 6.930722 CCCATGGAAAGTAAATAATTGATGGC 59.069 38.462 15.22 0.00 0.00 4.40
2550 6011 4.582701 TTGATGGCTGTTTGGTTTGTAG 57.417 40.909 0.00 0.00 0.00 2.74
2602 6063 3.129462 TCTTATCTGCTCAAGTGTCTCCG 59.871 47.826 0.00 0.00 0.00 4.63
2640 6104 4.124851 ACTCCGTAGCTTTTATCAGTGG 57.875 45.455 0.00 0.00 0.00 4.00
2641 6105 3.514309 ACTCCGTAGCTTTTATCAGTGGT 59.486 43.478 0.00 0.00 0.00 4.16
2642 6106 3.857052 TCCGTAGCTTTTATCAGTGGTG 58.143 45.455 0.00 0.00 0.00 4.17
2643 6107 3.512329 TCCGTAGCTTTTATCAGTGGTGA 59.488 43.478 0.00 0.00 37.02 4.02
2644 6108 4.020928 TCCGTAGCTTTTATCAGTGGTGAA 60.021 41.667 0.00 0.00 35.88 3.18
2645 6109 4.330074 CCGTAGCTTTTATCAGTGGTGAAG 59.670 45.833 0.00 0.00 35.88 3.02
2646 6110 4.201724 CGTAGCTTTTATCAGTGGTGAAGC 60.202 45.833 14.93 14.93 35.88 3.86
2647 6111 3.084786 AGCTTTTATCAGTGGTGAAGCC 58.915 45.455 17.66 5.65 34.56 4.35
2648 6112 2.819608 GCTTTTATCAGTGGTGAAGCCA 59.180 45.455 12.77 0.00 46.95 4.75
2656 6120 2.876581 TGGTGAAGCCATGCATGAG 58.123 52.632 28.31 18.06 43.61 2.90
2657 6121 1.317431 TGGTGAAGCCATGCATGAGC 61.317 55.000 28.31 25.94 43.61 4.26
2658 6122 1.035932 GGTGAAGCCATGCATGAGCT 61.036 55.000 28.31 27.56 38.34 4.09
2659 6123 0.100682 GTGAAGCCATGCATGAGCTG 59.899 55.000 30.71 16.82 42.74 4.24
2660 6124 0.323087 TGAAGCCATGCATGAGCTGT 60.323 50.000 30.71 23.09 42.74 4.40
2661 6125 0.100682 GAAGCCATGCATGAGCTGTG 59.899 55.000 30.71 15.90 42.74 3.66
2662 6126 1.945354 AAGCCATGCATGAGCTGTGC 61.945 55.000 30.71 22.94 42.74 4.57
2666 6130 3.976758 TGCATGAGCTGTGCAGTC 58.023 55.556 16.99 0.00 46.76 3.51
2667 6131 1.071814 TGCATGAGCTGTGCAGTCA 59.928 52.632 16.99 4.46 46.76 3.41
2668 6132 0.535553 TGCATGAGCTGTGCAGTCAA 60.536 50.000 16.99 0.00 46.76 3.18
2669 6133 0.594602 GCATGAGCTGTGCAGTCAAA 59.405 50.000 14.14 0.00 42.08 2.69
2670 6134 1.201647 GCATGAGCTGTGCAGTCAAAT 59.798 47.619 14.14 0.00 42.08 2.32
2671 6135 2.863739 CATGAGCTGTGCAGTCAAATG 58.136 47.619 0.00 0.00 0.00 2.32
2672 6136 2.259266 TGAGCTGTGCAGTCAAATGA 57.741 45.000 0.00 0.00 0.00 2.57
2673 6137 1.875514 TGAGCTGTGCAGTCAAATGAC 59.124 47.619 5.40 5.40 45.08 3.06
2687 6151 6.738352 GTCAAATGACTACACAGCTTTTTG 57.262 37.500 6.30 0.00 41.65 2.44
2688 6152 5.687285 GTCAAATGACTACACAGCTTTTTGG 59.313 40.000 6.30 0.00 41.65 3.28
2689 6153 3.923017 ATGACTACACAGCTTTTTGGC 57.077 42.857 0.00 0.00 0.00 4.52
2690 6154 2.649190 TGACTACACAGCTTTTTGGCA 58.351 42.857 0.00 0.00 34.17 4.92
2691 6155 3.020274 TGACTACACAGCTTTTTGGCAA 58.980 40.909 0.00 0.00 34.17 4.52
2692 6156 3.066621 TGACTACACAGCTTTTTGGCAAG 59.933 43.478 0.00 0.00 34.17 4.01
2693 6157 3.287222 ACTACACAGCTTTTTGGCAAGA 58.713 40.909 0.00 0.00 34.17 3.02
2694 6158 3.699038 ACTACACAGCTTTTTGGCAAGAA 59.301 39.130 0.00 0.82 34.17 2.52
2695 6159 2.892374 ACACAGCTTTTTGGCAAGAAC 58.108 42.857 0.00 0.00 34.17 3.01
2696 6160 2.233431 ACACAGCTTTTTGGCAAGAACA 59.767 40.909 0.00 0.00 34.17 3.18
2697 6161 3.118665 ACACAGCTTTTTGGCAAGAACAT 60.119 39.130 0.00 0.00 34.17 2.71
2698 6162 3.492011 CACAGCTTTTTGGCAAGAACATC 59.508 43.478 0.00 0.00 34.17 3.06
2699 6163 3.132646 ACAGCTTTTTGGCAAGAACATCA 59.867 39.130 0.00 0.00 34.17 3.07
2700 6164 4.202284 ACAGCTTTTTGGCAAGAACATCAT 60.202 37.500 0.00 0.00 34.17 2.45
2701 6165 5.010922 ACAGCTTTTTGGCAAGAACATCATA 59.989 36.000 0.00 0.00 34.17 2.15
2702 6166 5.346822 CAGCTTTTTGGCAAGAACATCATAC 59.653 40.000 0.00 0.00 34.17 2.39
2703 6167 5.010922 AGCTTTTTGGCAAGAACATCATACA 59.989 36.000 0.00 0.00 34.17 2.29
2704 6168 5.695816 GCTTTTTGGCAAGAACATCATACAA 59.304 36.000 0.00 0.00 0.00 2.41
2705 6169 6.369615 GCTTTTTGGCAAGAACATCATACAAT 59.630 34.615 0.00 0.00 0.00 2.71
2706 6170 7.622672 GCTTTTTGGCAAGAACATCATACAATG 60.623 37.037 0.00 0.00 0.00 2.82
2707 6171 6.587206 TTTGGCAAGAACATCATACAATGA 57.413 33.333 0.00 0.00 44.55 2.57
2708 6172 5.823209 TGGCAAGAACATCATACAATGAG 57.177 39.130 0.00 0.00 43.53 2.90
2709 6173 5.255687 TGGCAAGAACATCATACAATGAGT 58.744 37.500 0.00 0.00 43.53 3.41
2710 6174 6.413892 TGGCAAGAACATCATACAATGAGTA 58.586 36.000 0.00 0.00 43.53 2.59
2711 6175 7.056006 TGGCAAGAACATCATACAATGAGTAT 58.944 34.615 0.00 0.00 44.20 2.12
2712 6176 8.210265 TGGCAAGAACATCATACAATGAGTATA 58.790 33.333 0.00 0.00 41.47 1.47
2713 6177 9.224267 GGCAAGAACATCATACAATGAGTATAT 57.776 33.333 0.00 0.00 41.47 0.86
2739 6203 7.812309 TCATGTAGAGAAAATCACAAGTACG 57.188 36.000 0.00 0.00 0.00 3.67
2740 6204 7.375834 TCATGTAGAGAAAATCACAAGTACGT 58.624 34.615 0.00 0.00 0.00 3.57
2741 6205 8.517056 TCATGTAGAGAAAATCACAAGTACGTA 58.483 33.333 0.00 0.00 0.00 3.57
2742 6206 8.584600 CATGTAGAGAAAATCACAAGTACGTAC 58.415 37.037 18.10 18.10 0.00 3.67
2743 6207 7.650890 TGTAGAGAAAATCACAAGTACGTACA 58.349 34.615 26.55 6.82 0.00 2.90
2744 6208 8.301720 TGTAGAGAAAATCACAAGTACGTACAT 58.698 33.333 26.55 13.27 0.00 2.29
2745 6209 9.778993 GTAGAGAAAATCACAAGTACGTACATA 57.221 33.333 26.55 8.02 0.00 2.29
2747 6211 9.302345 AGAGAAAATCACAAGTACGTACATATG 57.698 33.333 26.55 22.02 0.00 1.78
2748 6212 9.297586 GAGAAAATCACAAGTACGTACATATGA 57.702 33.333 26.55 20.04 0.00 2.15
2749 6213 9.084164 AGAAAATCACAAGTACGTACATATGAC 57.916 33.333 26.55 8.64 0.00 3.06
2750 6214 8.997621 AAAATCACAAGTACGTACATATGACT 57.002 30.769 26.55 7.93 0.00 3.41
2752 6216 9.512435 AAATCACAAGTACGTACATATGACTAC 57.488 33.333 26.55 1.52 0.00 2.73
2753 6217 7.614124 TCACAAGTACGTACATATGACTACA 57.386 36.000 26.55 0.00 0.00 2.74
2754 6218 7.466805 TCACAAGTACGTACATATGACTACAC 58.533 38.462 26.55 0.00 0.00 2.90
2755 6219 7.119553 TCACAAGTACGTACATATGACTACACA 59.880 37.037 26.55 0.00 0.00 3.72
2756 6220 7.751793 CACAAGTACGTACATATGACTACACAA 59.248 37.037 26.55 0.00 0.00 3.33
2757 6221 7.966753 ACAAGTACGTACATATGACTACACAAG 59.033 37.037 26.55 2.00 0.00 3.16
2758 6222 7.621428 AGTACGTACATATGACTACACAAGT 57.379 36.000 26.55 0.00 42.80 3.16
2759 6223 8.048534 AGTACGTACATATGACTACACAAGTT 57.951 34.615 26.55 0.00 39.07 2.66
2760 6224 8.517878 AGTACGTACATATGACTACACAAGTTT 58.482 33.333 26.55 0.00 39.07 2.66
2761 6225 7.576750 ACGTACATATGACTACACAAGTTTG 57.423 36.000 10.38 0.00 39.07 2.93
2762 6226 7.372714 ACGTACATATGACTACACAAGTTTGA 58.627 34.615 10.38 0.00 39.07 2.69
2763 6227 7.868922 ACGTACATATGACTACACAAGTTTGAA 59.131 33.333 10.38 0.00 39.07 2.69
2764 6228 8.869897 CGTACATATGACTACACAAGTTTGAAT 58.130 33.333 10.38 0.00 39.07 2.57
2767 6231 9.283768 ACATATGACTACACAAGTTTGAATTGA 57.716 29.630 10.38 0.00 39.07 2.57
2768 6232 9.546909 CATATGACTACACAAGTTTGAATTGAC 57.453 33.333 0.00 0.00 39.07 3.18
2769 6233 7.807977 ATGACTACACAAGTTTGAATTGACT 57.192 32.000 0.00 0.00 39.07 3.41
2770 6234 8.902540 ATGACTACACAAGTTTGAATTGACTA 57.097 30.769 0.00 0.00 39.07 2.59
2771 6235 8.138365 TGACTACACAAGTTTGAATTGACTAC 57.862 34.615 0.00 0.00 39.07 2.73
2772 6236 7.766738 TGACTACACAAGTTTGAATTGACTACA 59.233 33.333 0.00 0.00 39.07 2.74
2773 6237 7.916552 ACTACACAAGTTTGAATTGACTACAC 58.083 34.615 0.00 0.00 33.35 2.90
2774 6238 6.751514 ACACAAGTTTGAATTGACTACACA 57.248 33.333 0.00 0.00 0.00 3.72
2775 6239 7.333528 ACACAAGTTTGAATTGACTACACAT 57.666 32.000 0.00 0.00 0.00 3.21
2776 6240 7.195646 ACACAAGTTTGAATTGACTACACATG 58.804 34.615 0.00 0.00 0.00 3.21
2777 6241 7.066887 ACACAAGTTTGAATTGACTACACATGA 59.933 33.333 0.00 0.00 0.00 3.07
2778 6242 7.914871 CACAAGTTTGAATTGACTACACATGAA 59.085 33.333 0.00 0.00 0.00 2.57
2779 6243 7.915397 ACAAGTTTGAATTGACTACACATGAAC 59.085 33.333 0.00 0.00 0.00 3.18
2780 6244 6.658831 AGTTTGAATTGACTACACATGAACG 58.341 36.000 0.00 0.00 0.00 3.95
2781 6245 6.481976 AGTTTGAATTGACTACACATGAACGA 59.518 34.615 0.00 0.00 0.00 3.85
2782 6246 6.852858 TTGAATTGACTACACATGAACGAA 57.147 33.333 0.00 0.00 0.00 3.85
2783 6247 7.433708 TTGAATTGACTACACATGAACGAAT 57.566 32.000 0.00 0.00 0.00 3.34
2784 6248 7.433708 TGAATTGACTACACATGAACGAATT 57.566 32.000 0.00 0.00 0.00 2.17
2785 6249 7.518161 TGAATTGACTACACATGAACGAATTC 58.482 34.615 0.00 0.00 35.18 2.17
2786 6250 5.856126 TTGACTACACATGAACGAATTCC 57.144 39.130 0.00 0.00 33.49 3.01
2787 6251 5.147330 TGACTACACATGAACGAATTCCT 57.853 39.130 0.00 0.00 33.49 3.36
2788 6252 4.929211 TGACTACACATGAACGAATTCCTG 59.071 41.667 0.00 0.00 36.74 3.86
2789 6253 4.253685 ACTACACATGAACGAATTCCTGG 58.746 43.478 0.00 0.00 35.43 4.45
2790 6254 1.812571 ACACATGAACGAATTCCTGGC 59.187 47.619 0.00 0.00 35.43 4.85
2791 6255 1.811965 CACATGAACGAATTCCTGGCA 59.188 47.619 0.00 0.00 35.43 4.92
2792 6256 1.812571 ACATGAACGAATTCCTGGCAC 59.187 47.619 0.00 0.00 35.43 5.01
2793 6257 1.133025 CATGAACGAATTCCTGGCACC 59.867 52.381 0.00 0.00 33.49 5.01
2794 6258 0.953471 TGAACGAATTCCTGGCACCG 60.953 55.000 0.00 0.00 33.49 4.94
2795 6259 2.253414 GAACGAATTCCTGGCACCGC 62.253 60.000 0.00 0.00 0.00 5.68
2826 6290 8.510505 GGCTTTTATTTCAAAATGCATAAACCA 58.489 29.630 0.00 0.00 39.81 3.67
2836 6300 7.072202 TCAAAATGCATAAACCATATCCCCATT 59.928 33.333 0.00 0.00 0.00 3.16
2844 6308 6.538209 AAACCATATCCCCATTACATGGTA 57.462 37.500 5.06 0.00 46.68 3.25
2847 6311 7.366226 AACCATATCCCCATTACATGGTAAAA 58.634 34.615 5.06 0.00 46.68 1.52
2848 6312 7.846823 AACCATATCCCCATTACATGGTAAAAA 59.153 33.333 5.06 0.00 46.68 1.94
2900 6364 3.677121 CACTAGAGTCACTGTCATGTTGC 59.323 47.826 0.00 0.00 0.00 4.17
2986 6462 4.152759 GGAATTCGGTGTCACGATGTAAAA 59.847 41.667 0.00 0.00 43.11 1.52
3054 11456 0.327191 CCCCTAACAGGCCTTCCCTA 60.327 60.000 0.00 0.00 44.09 3.53
3106 11508 4.069232 CCAGTCGCGCCTCCAGAA 62.069 66.667 0.00 0.00 0.00 3.02
3107 11509 2.507992 CAGTCGCGCCTCCAGAAG 60.508 66.667 0.00 0.00 0.00 2.85
3108 11510 4.443266 AGTCGCGCCTCCAGAAGC 62.443 66.667 0.00 0.00 0.00 3.86
3113 11515 4.394712 CGCCTCCAGAAGCCCGTT 62.395 66.667 0.00 0.00 0.00 4.44
3115 11517 1.603739 GCCTCCAGAAGCCCGTTTT 60.604 57.895 0.00 0.00 0.00 2.43
3119 12461 1.081442 CCAGAAGCCCGTTTTTCGC 60.081 57.895 0.00 0.00 38.35 4.70
3126 12468 4.439472 CCGTTTTTCGCGGGCTCG 62.439 66.667 6.13 0.00 44.98 5.03
3127 12469 4.439472 CGTTTTTCGCGGGCTCGG 62.439 66.667 8.71 0.00 36.79 4.63
3139 12481 4.699522 GCTCGGGCCGAAACTGGT 62.700 66.667 30.59 0.00 34.74 4.00
3160 12502 4.754667 GGCGGACCCAGGACGAAC 62.755 72.222 9.14 0.00 0.00 3.95
3161 12503 4.754667 GCGGACCCAGGACGAACC 62.755 72.222 9.14 0.00 39.35 3.62
3163 12505 4.078516 GGACCCAGGACGAACCCG 62.079 72.222 0.00 0.00 40.05 5.28
3204 14049 2.429069 GCCGGCACAAGCGAAAAG 60.429 61.111 24.80 0.00 43.41 2.27
3205 14050 2.255252 CCGGCACAAGCGAAAAGG 59.745 61.111 0.00 0.00 43.41 3.11
3207 14052 2.049156 GGCACAAGCGAAAAGGGC 60.049 61.111 0.00 0.00 43.41 5.19
3216 14061 3.733960 GAAAAGGGCGCGTGGGTC 61.734 66.667 8.43 0.00 0.00 4.46
3236 14081 4.180946 CCCTGTCGGCGAGTCGAG 62.181 72.222 18.61 9.48 40.01 4.04
3237 14082 4.838486 CCTGTCGGCGAGTCGAGC 62.838 72.222 18.61 0.00 40.01 5.03
3245 14090 2.277628 CGAGTCGAGCGCCTCTTC 60.278 66.667 6.73 0.00 0.00 2.87
3246 14091 2.103340 GAGTCGAGCGCCTCTTCC 59.897 66.667 2.29 0.00 0.00 3.46
3247 14092 3.418744 GAGTCGAGCGCCTCTTCCC 62.419 68.421 2.29 0.00 0.00 3.97
3248 14093 4.856607 GTCGAGCGCCTCTTCCCG 62.857 72.222 2.29 0.00 0.00 5.14
3255 14100 3.125573 GCCTCTTCCCGCCGTTTC 61.126 66.667 0.00 0.00 0.00 2.78
3256 14101 2.663196 CCTCTTCCCGCCGTTTCT 59.337 61.111 0.00 0.00 0.00 2.52
3257 14102 1.003718 CCTCTTCCCGCCGTTTCTT 60.004 57.895 0.00 0.00 0.00 2.52
3258 14103 1.019805 CCTCTTCCCGCCGTTTCTTC 61.020 60.000 0.00 0.00 0.00 2.87
3259 14104 1.004200 TCTTCCCGCCGTTTCTTCC 60.004 57.895 0.00 0.00 0.00 3.46
3261 14106 3.887335 TTCCCGCCGTTTCTTCCCG 62.887 63.158 0.00 0.00 0.00 5.14
3265 14110 2.613506 CGCCGTTTCTTCCCGCTTT 61.614 57.895 0.00 0.00 0.00 3.51
3267 14112 0.386858 GCCGTTTCTTCCCGCTTTTC 60.387 55.000 0.00 0.00 0.00 2.29
3268 14113 0.240145 CCGTTTCTTCCCGCTTTTCC 59.760 55.000 0.00 0.00 0.00 3.13
3269 14114 0.240145 CGTTTCTTCCCGCTTTTCCC 59.760 55.000 0.00 0.00 0.00 3.97
3270 14115 0.601558 GTTTCTTCCCGCTTTTCCCC 59.398 55.000 0.00 0.00 0.00 4.81
3271 14116 0.541063 TTTCTTCCCGCTTTTCCCCC 60.541 55.000 0.00 0.00 0.00 5.40
3274 14119 2.426305 CTTCCCGCTTTTCCCCCACT 62.426 60.000 0.00 0.00 0.00 4.00
3276 14121 1.977009 CCCGCTTTTCCCCCACTTC 60.977 63.158 0.00 0.00 0.00 3.01
3277 14122 1.977009 CCGCTTTTCCCCCACTTCC 60.977 63.158 0.00 0.00 0.00 3.46
3278 14123 1.977009 CGCTTTTCCCCCACTTCCC 60.977 63.158 0.00 0.00 0.00 3.97
3280 14125 0.178932 GCTTTTCCCCCACTTCCCTT 60.179 55.000 0.00 0.00 0.00 3.95
3281 14126 1.924731 CTTTTCCCCCACTTCCCTTC 58.075 55.000 0.00 0.00 0.00 3.46
3283 14128 0.703056 TTTCCCCCACTTCCCTTCCA 60.703 55.000 0.00 0.00 0.00 3.53
3285 14130 0.423956 TCCCCCACTTCCCTTCCATA 59.576 55.000 0.00 0.00 0.00 2.74
3287 14132 1.596496 CCCCACTTCCCTTCCATACT 58.404 55.000 0.00 0.00 0.00 2.12
3288 14133 1.490910 CCCCACTTCCCTTCCATACTC 59.509 57.143 0.00 0.00 0.00 2.59
3289 14134 2.482494 CCCACTTCCCTTCCATACTCT 58.518 52.381 0.00 0.00 0.00 3.24
3290 14135 2.846827 CCCACTTCCCTTCCATACTCTT 59.153 50.000 0.00 0.00 0.00 2.85
3291 14136 3.267031 CCCACTTCCCTTCCATACTCTTT 59.733 47.826 0.00 0.00 0.00 2.52
3292 14137 4.518249 CCACTTCCCTTCCATACTCTTTC 58.482 47.826 0.00 0.00 0.00 2.62
3293 14138 4.226168 CCACTTCCCTTCCATACTCTTTCT 59.774 45.833 0.00 0.00 0.00 2.52
3295 14140 5.877564 CACTTCCCTTCCATACTCTTTCTTC 59.122 44.000 0.00 0.00 0.00 2.87
3296 14141 5.045505 ACTTCCCTTCCATACTCTTTCTTCC 60.046 44.000 0.00 0.00 0.00 3.46
3297 14142 4.699994 TCCCTTCCATACTCTTTCTTCCT 58.300 43.478 0.00 0.00 0.00 3.36
3300 14145 4.141597 CCTTCCATACTCTTTCTTCCTCCC 60.142 50.000 0.00 0.00 0.00 4.30
3301 14146 3.031736 TCCATACTCTTTCTTCCTCCCG 58.968 50.000 0.00 0.00 0.00 5.14
3302 14147 2.483889 CCATACTCTTTCTTCCTCCCGC 60.484 54.545 0.00 0.00 0.00 6.13
3303 14148 2.233305 TACTCTTTCTTCCTCCCGCT 57.767 50.000 0.00 0.00 0.00 5.52
3304 14149 0.899019 ACTCTTTCTTCCTCCCGCTC 59.101 55.000 0.00 0.00 0.00 5.03
3305 14150 0.179124 CTCTTTCTTCCTCCCGCTCG 60.179 60.000 0.00 0.00 0.00 5.03
3306 14151 1.811679 CTTTCTTCCTCCCGCTCGC 60.812 63.158 0.00 0.00 0.00 5.03
3307 14152 3.310860 TTTCTTCCTCCCGCTCGCC 62.311 63.158 0.00 0.00 0.00 5.54
3308 14153 4.761058 TCTTCCTCCCGCTCGCCT 62.761 66.667 0.00 0.00 0.00 5.52
3309 14154 4.214327 CTTCCTCCCGCTCGCCTC 62.214 72.222 0.00 0.00 0.00 4.70
3319 14164 4.785453 CTCGCCTCCCAGTTGGCC 62.785 72.222 0.00 0.00 45.90 5.36
3324 14169 4.431131 CTCCCAGTTGGCCGCCAT 62.431 66.667 14.30 0.00 31.53 4.40
3325 14170 4.738998 TCCCAGTTGGCCGCCATG 62.739 66.667 14.30 9.60 31.53 3.66
3334 14179 3.818787 GCCGCCATGCCACAGAAG 61.819 66.667 0.00 0.00 0.00 2.85
3335 14180 2.046023 CCGCCATGCCACAGAAGA 60.046 61.111 0.00 0.00 0.00 2.87
3336 14181 1.675310 CCGCCATGCCACAGAAGAA 60.675 57.895 0.00 0.00 0.00 2.52
3339 14184 1.675714 CGCCATGCCACAGAAGAAGTA 60.676 52.381 0.00 0.00 0.00 2.24
3340 14185 1.740025 GCCATGCCACAGAAGAAGTAC 59.260 52.381 0.00 0.00 0.00 2.73
3341 14186 2.002586 CCATGCCACAGAAGAAGTACG 58.997 52.381 0.00 0.00 0.00 3.67
3342 14187 2.612972 CCATGCCACAGAAGAAGTACGT 60.613 50.000 0.00 0.00 0.00 3.57
3343 14188 2.433868 TGCCACAGAAGAAGTACGTC 57.566 50.000 0.00 0.00 0.00 4.34
3344 14189 1.335597 TGCCACAGAAGAAGTACGTCG 60.336 52.381 3.05 0.00 32.54 5.12
3345 14190 1.337821 CCACAGAAGAAGTACGTCGC 58.662 55.000 3.05 0.43 32.54 5.19
3346 14191 1.068472 CCACAGAAGAAGTACGTCGCT 60.068 52.381 3.05 2.71 32.54 4.93
3347 14192 1.979469 CACAGAAGAAGTACGTCGCTG 59.021 52.381 22.71 22.71 33.63 5.18
3348 14193 1.878088 ACAGAAGAAGTACGTCGCTGA 59.122 47.619 27.48 0.00 32.53 4.26
3350 14195 3.688185 ACAGAAGAAGTACGTCGCTGATA 59.312 43.478 27.48 0.00 32.53 2.15
3351 14196 4.155462 ACAGAAGAAGTACGTCGCTGATAA 59.845 41.667 27.48 0.00 32.53 1.75
3354 14199 2.098770 AGAAGTACGTCGCTGATAACCC 59.901 50.000 3.05 0.00 0.00 4.11
3355 14200 1.466856 AGTACGTCGCTGATAACCCA 58.533 50.000 0.00 0.00 0.00 4.51
3356 14201 1.133790 AGTACGTCGCTGATAACCCAC 59.866 52.381 0.00 0.00 0.00 4.61
3357 14202 1.135315 GTACGTCGCTGATAACCCACA 60.135 52.381 0.00 0.00 0.00 4.17
3358 14203 0.319083 ACGTCGCTGATAACCCACAA 59.681 50.000 0.00 0.00 0.00 3.33
3360 14205 1.671850 CGTCGCTGATAACCCACAAGT 60.672 52.381 0.00 0.00 0.00 3.16
3361 14206 2.416296 CGTCGCTGATAACCCACAAGTA 60.416 50.000 0.00 0.00 0.00 2.24
3365 14210 4.038763 TCGCTGATAACCCACAAGTATAGG 59.961 45.833 0.00 0.00 0.00 2.57
3372 14217 2.863809 CCCACAAGTATAGGGGATTGC 58.136 52.381 0.00 0.00 43.57 3.56
3373 14218 2.174639 CCCACAAGTATAGGGGATTGCA 59.825 50.000 0.00 0.00 43.57 4.08
3374 14219 3.372566 CCCACAAGTATAGGGGATTGCAA 60.373 47.826 0.00 0.00 43.57 4.08
3377 14222 4.336433 CACAAGTATAGGGGATTGCAACAG 59.664 45.833 0.00 0.00 0.00 3.16
3378 14223 3.214696 AGTATAGGGGATTGCAACAGC 57.785 47.619 0.00 0.00 0.00 4.40
3379 14224 2.780010 AGTATAGGGGATTGCAACAGCT 59.220 45.455 0.00 0.00 0.00 4.24
3380 14225 2.834638 ATAGGGGATTGCAACAGCTT 57.165 45.000 0.00 0.00 0.00 3.74
3381 14226 2.603075 TAGGGGATTGCAACAGCTTT 57.397 45.000 0.00 0.00 0.00 3.51
3382 14227 1.260544 AGGGGATTGCAACAGCTTTC 58.739 50.000 0.00 0.00 0.00 2.62
3385 14230 1.135575 GGGATTGCAACAGCTTTCGAG 60.136 52.381 0.00 0.00 0.00 4.04
3386 14231 1.135575 GGATTGCAACAGCTTTCGAGG 60.136 52.381 0.00 0.00 0.00 4.63
3387 14232 0.883833 ATTGCAACAGCTTTCGAGGG 59.116 50.000 0.00 0.00 0.00 4.30
3390 14235 1.079503 GCAACAGCTTTCGAGGGTAG 58.920 55.000 0.00 0.00 0.00 3.18
3392 14237 2.611518 CAACAGCTTTCGAGGGTAGAG 58.388 52.381 0.00 0.00 0.00 2.43
3393 14238 1.926108 ACAGCTTTCGAGGGTAGAGT 58.074 50.000 0.00 0.00 0.00 3.24
3394 14239 3.083122 ACAGCTTTCGAGGGTAGAGTA 57.917 47.619 0.00 0.00 0.00 2.59
3395 14240 3.633418 ACAGCTTTCGAGGGTAGAGTAT 58.367 45.455 0.00 0.00 0.00 2.12
3397 14242 4.098196 ACAGCTTTCGAGGGTAGAGTATTC 59.902 45.833 0.00 0.00 0.00 1.75
3398 14243 4.098044 CAGCTTTCGAGGGTAGAGTATTCA 59.902 45.833 0.00 0.00 0.00 2.57
3399 14244 4.710375 AGCTTTCGAGGGTAGAGTATTCAA 59.290 41.667 0.00 0.00 0.00 2.69
3400 14245 4.804665 GCTTTCGAGGGTAGAGTATTCAAC 59.195 45.833 0.00 0.00 0.00 3.18
3401 14246 4.996788 TTCGAGGGTAGAGTATTCAACC 57.003 45.455 0.00 0.00 0.00 3.77
3418 14263 9.796120 GTATTCAACCCAAATTTATTGATTCGA 57.204 29.630 10.73 0.00 31.45 3.71
3419 14264 8.702163 ATTCAACCCAAATTTATTGATTCGAC 57.298 30.769 10.73 0.00 31.45 4.20
3420 14265 7.220741 TCAACCCAAATTTATTGATTCGACA 57.779 32.000 7.33 0.00 0.00 4.35
3421 14266 7.087639 TCAACCCAAATTTATTGATTCGACAC 58.912 34.615 7.33 0.00 0.00 3.67
3422 14267 6.582677 ACCCAAATTTATTGATTCGACACA 57.417 33.333 0.00 0.00 0.00 3.72
3423 14268 6.987386 ACCCAAATTTATTGATTCGACACAA 58.013 32.000 6.03 6.03 0.00 3.33
3424 14269 7.090173 ACCCAAATTTATTGATTCGACACAAG 58.910 34.615 8.90 0.00 0.00 3.16
3425 14270 6.531240 CCCAAATTTATTGATTCGACACAAGG 59.469 38.462 8.90 3.91 0.00 3.61
3426 14271 7.090173 CCAAATTTATTGATTCGACACAAGGT 58.910 34.615 8.90 0.00 0.00 3.50
3427 14272 7.598493 CCAAATTTATTGATTCGACACAAGGTT 59.402 33.333 8.90 0.00 0.00 3.50
3428 14273 9.619316 CAAATTTATTGATTCGACACAAGGTTA 57.381 29.630 8.90 0.00 0.00 2.85
3429 14274 9.840427 AAATTTATTGATTCGACACAAGGTTAG 57.160 29.630 8.90 0.00 0.00 2.34
3430 14275 4.946784 ATTGATTCGACACAAGGTTAGC 57.053 40.909 8.90 0.00 0.00 3.09
3431 14276 2.695359 TGATTCGACACAAGGTTAGCC 58.305 47.619 0.00 0.00 0.00 3.93
3432 14277 2.037902 TGATTCGACACAAGGTTAGCCA 59.962 45.455 0.00 0.00 37.19 4.75
3433 14278 2.623878 TTCGACACAAGGTTAGCCAA 57.376 45.000 0.00 0.00 37.19 4.52
3434 14279 2.623878 TCGACACAAGGTTAGCCAAA 57.376 45.000 0.00 0.00 37.19 3.28
3435 14280 2.920524 TCGACACAAGGTTAGCCAAAA 58.079 42.857 0.00 0.00 37.19 2.44
3460 14305 9.618890 AAAATATTCTCAAGTATTAGCAGCTGA 57.381 29.630 20.43 0.00 0.00 4.26
3461 14306 8.830201 AATATTCTCAAGTATTAGCAGCTGAG 57.170 34.615 20.43 1.96 0.00 3.35
3463 14308 5.667539 TCTCAAGTATTAGCAGCTGAGTT 57.332 39.130 20.43 1.83 0.00 3.01
3464 14309 5.414360 TCTCAAGTATTAGCAGCTGAGTTG 58.586 41.667 20.43 15.03 0.00 3.16
3466 14311 5.171476 TCAAGTATTAGCAGCTGAGTTGTC 58.829 41.667 20.43 0.00 0.00 3.18
3467 14312 4.808414 AGTATTAGCAGCTGAGTTGTCA 57.192 40.909 20.43 0.00 0.00 3.58
3470 14315 6.176183 AGTATTAGCAGCTGAGTTGTCAATT 58.824 36.000 20.43 0.00 30.14 2.32
3471 14316 5.557891 ATTAGCAGCTGAGTTGTCAATTC 57.442 39.130 20.43 1.25 30.14 2.17
3472 14317 2.854963 AGCAGCTGAGTTGTCAATTCA 58.145 42.857 20.43 10.07 30.14 2.57
3473 14318 3.216800 AGCAGCTGAGTTGTCAATTCAA 58.783 40.909 20.43 0.00 30.14 2.69
3474 14319 3.004106 AGCAGCTGAGTTGTCAATTCAAC 59.996 43.478 20.43 7.62 45.33 3.18
3475 14320 3.854784 GCAGCTGAGTTGTCAATTCAACC 60.855 47.826 20.43 6.34 45.90 3.77
3476 14321 3.316029 CAGCTGAGTTGTCAATTCAACCA 59.684 43.478 8.42 4.56 45.90 3.67
3477 14322 3.316308 AGCTGAGTTGTCAATTCAACCAC 59.684 43.478 11.44 3.11 45.90 4.16
3478 14323 3.066621 GCTGAGTTGTCAATTCAACCACA 59.933 43.478 11.44 6.79 45.90 4.17
3479 14324 4.601019 CTGAGTTGTCAATTCAACCACAC 58.399 43.478 11.44 0.00 45.90 3.82
3480 14325 3.380004 TGAGTTGTCAATTCAACCACACC 59.620 43.478 8.22 0.00 45.90 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 5.699915 CGAGATGCTTGATTTACATGAGGAT 59.300 40.000 0.00 0.00 0.00 3.24
30 2832 1.673665 CTTGTCCTCAGGCACCTGC 60.674 63.158 12.03 0.00 43.31 4.85
160 2965 8.159344 CTTTAACAGGAATCCAGGATCAATAC 57.841 38.462 1.11 0.00 0.00 1.89
263 3086 1.772819 AAGCAGACCCTGGACTGGTG 61.773 60.000 18.36 2.83 44.67 4.17
330 3195 2.072298 GATGAAACTGTCGCAAGCTCT 58.928 47.619 0.00 0.00 37.18 4.09
338 3203 2.600420 CGGTGAGATGATGAAACTGTCG 59.400 50.000 0.00 0.00 0.00 4.35
387 3263 8.616076 GTTGTGATTGATCTTTACCTATTCTGG 58.384 37.037 0.00 0.00 0.00 3.86
448 3325 6.180472 TCTTCCCATTAAGTTTGTCCTGATC 58.820 40.000 0.00 0.00 0.00 2.92
466 3343 1.916206 GAGAACTGGGGCCTCTTCCC 61.916 65.000 3.07 0.00 45.80 3.97
493 3370 4.162131 TGATGAGGCTGTAAAGATGCAGTA 59.838 41.667 0.00 0.00 40.94 2.74
504 3381 0.761187 GCCCTGATGATGAGGCTGTA 59.239 55.000 0.00 0.00 42.34 2.74
539 3416 4.548451 ATCATTGAACTCAGCAGTCTGA 57.452 40.909 3.32 0.00 46.43 3.27
596 3473 1.302832 CCTGAGCAAGACCGCCTTT 60.303 57.895 0.00 0.00 31.42 3.11
656 3533 6.909550 TTTCACTAATTGCCAATTGGTAGT 57.090 33.333 25.19 20.07 40.09 2.73
681 3826 7.518161 CATTACTCTGATTCGCAAGTTTGTAA 58.482 34.615 0.00 0.00 39.48 2.41
690 3835 2.288729 GCATGCATTACTCTGATTCGCA 59.711 45.455 14.21 0.00 0.00 5.10
692 3837 2.874086 TGGCATGCATTACTCTGATTCG 59.126 45.455 21.36 0.00 0.00 3.34
696 3841 2.749076 GTGTTGGCATGCATTACTCTGA 59.251 45.455 21.36 0.00 0.00 3.27
880 4064 1.464734 TCGTCTCAGTCCCATCTCAC 58.535 55.000 0.00 0.00 0.00 3.51
952 4137 0.248843 CCTGGTGCTCTGTCTCCTTC 59.751 60.000 0.00 0.00 0.00 3.46
979 4169 6.238869 GCCATTGGAGTTCTTGGATATTTCTC 60.239 42.308 6.95 0.00 0.00 2.87
1209 4427 2.350863 AGAATCCCCAGGTCTTCAGT 57.649 50.000 0.00 0.00 0.00 3.41
1640 4945 9.733219 CCGTTTAAACAAAAGTACCAGAAAATA 57.267 29.630 18.07 0.00 0.00 1.40
1641 4946 8.468399 TCCGTTTAAACAAAAGTACCAGAAAAT 58.532 29.630 18.07 0.00 0.00 1.82
1642 4947 7.824672 TCCGTTTAAACAAAAGTACCAGAAAA 58.175 30.769 18.07 0.00 0.00 2.29
1644 4949 6.998968 TCCGTTTAAACAAAAGTACCAGAA 57.001 33.333 18.07 0.00 0.00 3.02
1645 4950 6.993902 AGATCCGTTTAAACAAAAGTACCAGA 59.006 34.615 18.07 0.12 0.00 3.86
1646 4951 7.198306 AGATCCGTTTAAACAAAAGTACCAG 57.802 36.000 18.07 0.00 0.00 4.00
1647 4952 7.571080 AAGATCCGTTTAAACAAAAGTACCA 57.429 32.000 18.07 0.00 0.00 3.25
1648 4953 8.130469 TGAAAGATCCGTTTAAACAAAAGTACC 58.870 33.333 18.07 2.70 0.00 3.34
1649 4954 9.673454 ATGAAAGATCCGTTTAAACAAAAGTAC 57.327 29.630 18.07 4.14 0.00 2.73
1651 4956 9.030301 CAATGAAAGATCCGTTTAAACAAAAGT 57.970 29.630 18.07 0.00 0.00 2.66
1652 4957 9.030301 ACAATGAAAGATCCGTTTAAACAAAAG 57.970 29.630 18.07 4.09 0.00 2.27
1653 4958 8.934507 ACAATGAAAGATCCGTTTAAACAAAA 57.065 26.923 18.07 3.27 0.00 2.44
1654 4959 8.812329 CAACAATGAAAGATCCGTTTAAACAAA 58.188 29.630 18.07 5.71 0.00 2.83
1655 4960 7.976734 ACAACAATGAAAGATCCGTTTAAACAA 59.023 29.630 18.07 6.06 0.00 2.83
1660 4965 6.485313 ACAGACAACAATGAAAGATCCGTTTA 59.515 34.615 0.00 0.00 0.00 2.01
1674 4979 8.739972 AGTCTTTTCTACAAAACAGACAACAAT 58.260 29.630 5.91 0.00 32.69 2.71
1699 5006 8.734386 ACTCAAGACATAAATAAGCAAAGGAAG 58.266 33.333 0.00 0.00 0.00 3.46
1703 5010 9.499585 CATCACTCAAGACATAAATAAGCAAAG 57.500 33.333 0.00 0.00 0.00 2.77
1744 5108 8.058915 GTCGATTTTATTTCTGTAGCTCATGAC 58.941 37.037 0.00 0.00 0.00 3.06
1745 5109 7.763985 TGTCGATTTTATTTCTGTAGCTCATGA 59.236 33.333 0.00 0.00 0.00 3.07
1746 5110 7.909267 TGTCGATTTTATTTCTGTAGCTCATG 58.091 34.615 0.00 0.00 0.00 3.07
1748 5112 8.492673 AATGTCGATTTTATTTCTGTAGCTCA 57.507 30.769 0.00 0.00 0.00 4.26
1750 5114 9.601217 ACTAATGTCGATTTTATTTCTGTAGCT 57.399 29.630 0.00 0.00 0.00 3.32
1767 5142 8.873215 AATAGTCCAGTCAATTACTAATGTCG 57.127 34.615 0.00 0.00 35.76 4.35
1780 5155 2.831685 ACACGCAAATAGTCCAGTCA 57.168 45.000 0.00 0.00 0.00 3.41
1781 5156 5.447279 CCAATAACACGCAAATAGTCCAGTC 60.447 44.000 0.00 0.00 0.00 3.51
1791 5178 0.600557 CCCTGCCAATAACACGCAAA 59.399 50.000 0.00 0.00 30.85 3.68
1792 5185 0.250945 TCCCTGCCAATAACACGCAA 60.251 50.000 0.00 0.00 30.85 4.85
1795 5188 4.389374 AGATTATCCCTGCCAATAACACG 58.611 43.478 0.00 0.00 0.00 4.49
1799 5192 7.017551 ACTCATGTAGATTATCCCTGCCAATAA 59.982 37.037 0.00 0.00 0.00 1.40
1804 5197 4.899352 ACTCATGTAGATTATCCCTGCC 57.101 45.455 0.00 0.00 0.00 4.85
1813 5206 7.255035 GCACTTCAATGCATACTCATGTAGATT 60.255 37.037 0.00 0.00 45.39 2.40
1818 5211 4.627611 GCACTTCAATGCATACTCATGT 57.372 40.909 0.00 0.00 45.39 3.21
1885 5278 2.818432 CAAGGCAGTCTTCATCAAGCTT 59.182 45.455 0.00 0.00 32.41 3.74
1914 5307 0.540830 TGGGGGCGTTGCTGTTAAAT 60.541 50.000 0.00 0.00 0.00 1.40
2049 5442 4.019501 CCATCTCTAAGATATTGCAGCCCT 60.020 45.833 0.00 0.00 32.12 5.19
2216 5619 0.179137 TTATCTGCACGAGCCACGAG 60.179 55.000 1.39 1.33 45.77 4.18
2217 5620 0.459899 ATTATCTGCACGAGCCACGA 59.540 50.000 1.39 0.00 45.77 4.35
2219 5622 1.594862 GTCATTATCTGCACGAGCCAC 59.405 52.381 1.39 0.00 41.13 5.01
2220 5623 1.473257 GGTCATTATCTGCACGAGCCA 60.473 52.381 1.39 0.00 41.13 4.75
2221 5624 1.221414 GGTCATTATCTGCACGAGCC 58.779 55.000 1.39 0.00 41.13 4.70
2222 5625 1.939974 TGGTCATTATCTGCACGAGC 58.060 50.000 0.00 0.00 42.57 5.03
2254 5657 0.106015 AACTCTATGCATTGGCCCCC 60.106 55.000 3.54 0.00 40.13 5.40
2342 5750 1.080230 CAGATGAGCTATCGGCCCG 60.080 63.158 0.00 0.00 43.05 6.13
2376 5784 3.680490 TCATTTTCCTGTATTGTGCCGA 58.320 40.909 0.00 0.00 0.00 5.54
2496 5908 2.224378 CCATGGGTACTGTAGCATGGAG 60.224 54.545 26.55 11.88 37.19 3.86
2535 5950 4.679654 GCATGTTACTACAAACCAAACAGC 59.320 41.667 0.00 0.00 37.91 4.40
2536 5951 6.017109 AGAGCATGTTACTACAAACCAAACAG 60.017 38.462 0.00 0.00 37.91 3.16
2602 6063 4.022503 ACGGAGTATATAAGAAGGAACGGC 60.023 45.833 0.00 0.00 41.94 5.68
2638 6102 3.685954 AGCTCATGCATGGCTTCACCA 62.686 52.381 27.05 8.21 45.28 4.17
2639 6103 1.035932 AGCTCATGCATGGCTTCACC 61.036 55.000 27.05 10.72 42.74 4.02
2640 6104 0.100682 CAGCTCATGCATGGCTTCAC 59.899 55.000 28.99 13.81 42.74 3.18
2641 6105 0.323087 ACAGCTCATGCATGGCTTCA 60.323 50.000 28.99 11.36 42.74 3.02
2642 6106 0.100682 CACAGCTCATGCATGGCTTC 59.899 55.000 28.99 16.18 42.74 3.86
2643 6107 1.945354 GCACAGCTCATGCATGGCTT 61.945 55.000 28.99 20.59 42.88 4.35
2644 6108 2.415608 GCACAGCTCATGCATGGCT 61.416 57.895 27.05 27.05 42.88 4.75
2645 6109 2.104331 GCACAGCTCATGCATGGC 59.896 61.111 25.97 25.00 42.88 4.40
2650 6114 0.594602 TTTGACTGCACAGCTCATGC 59.405 50.000 11.81 11.81 43.68 4.06
2651 6115 2.486592 TCATTTGACTGCACAGCTCATG 59.513 45.455 0.00 0.00 0.00 3.07
2652 6116 2.486982 GTCATTTGACTGCACAGCTCAT 59.513 45.455 3.45 0.00 41.65 2.90
2653 6117 1.875514 GTCATTTGACTGCACAGCTCA 59.124 47.619 3.45 0.00 41.65 4.26
2654 6118 2.608467 GTCATTTGACTGCACAGCTC 57.392 50.000 3.45 0.00 41.65 4.09
2664 6128 5.687285 CCAAAAAGCTGTGTAGTCATTTGAC 59.313 40.000 2.41 2.41 45.08 3.18
2665 6129 5.735922 GCCAAAAAGCTGTGTAGTCATTTGA 60.736 40.000 0.00 0.00 0.00 2.69
2666 6130 4.445385 GCCAAAAAGCTGTGTAGTCATTTG 59.555 41.667 0.00 0.00 0.00 2.32
2667 6131 4.099266 TGCCAAAAAGCTGTGTAGTCATTT 59.901 37.500 0.00 0.00 0.00 2.32
2668 6132 3.636300 TGCCAAAAAGCTGTGTAGTCATT 59.364 39.130 0.00 0.00 0.00 2.57
2669 6133 3.221771 TGCCAAAAAGCTGTGTAGTCAT 58.778 40.909 0.00 0.00 0.00 3.06
2670 6134 2.649190 TGCCAAAAAGCTGTGTAGTCA 58.351 42.857 0.00 0.00 0.00 3.41
2671 6135 3.315191 TCTTGCCAAAAAGCTGTGTAGTC 59.685 43.478 0.00 0.00 0.00 2.59
2672 6136 3.287222 TCTTGCCAAAAAGCTGTGTAGT 58.713 40.909 0.00 0.00 0.00 2.73
2673 6137 3.988379 TCTTGCCAAAAAGCTGTGTAG 57.012 42.857 0.00 0.00 0.00 2.74
2674 6138 3.445450 TGTTCTTGCCAAAAAGCTGTGTA 59.555 39.130 0.00 0.00 0.00 2.90
2675 6139 2.233431 TGTTCTTGCCAAAAAGCTGTGT 59.767 40.909 0.00 0.00 0.00 3.72
2676 6140 2.891112 TGTTCTTGCCAAAAAGCTGTG 58.109 42.857 0.00 0.00 0.00 3.66
2677 6141 3.132646 TGATGTTCTTGCCAAAAAGCTGT 59.867 39.130 0.00 0.00 0.00 4.40
2678 6142 3.719924 TGATGTTCTTGCCAAAAAGCTG 58.280 40.909 0.00 0.00 0.00 4.24
2679 6143 4.612264 ATGATGTTCTTGCCAAAAAGCT 57.388 36.364 0.00 0.00 0.00 3.74
2680 6144 5.229423 TGTATGATGTTCTTGCCAAAAAGC 58.771 37.500 0.00 0.00 0.00 3.51
2681 6145 7.599621 TCATTGTATGATGTTCTTGCCAAAAAG 59.400 33.333 0.00 0.00 33.59 2.27
2682 6146 7.440198 TCATTGTATGATGTTCTTGCCAAAAA 58.560 30.769 0.00 0.00 33.59 1.94
2683 6147 6.990798 TCATTGTATGATGTTCTTGCCAAAA 58.009 32.000 0.00 0.00 33.59 2.44
2684 6148 6.209192 ACTCATTGTATGATGTTCTTGCCAAA 59.791 34.615 0.00 0.00 38.85 3.28
2685 6149 5.711506 ACTCATTGTATGATGTTCTTGCCAA 59.288 36.000 0.00 0.00 38.85 4.52
2686 6150 5.255687 ACTCATTGTATGATGTTCTTGCCA 58.744 37.500 0.00 0.00 38.85 4.92
2687 6151 5.824904 ACTCATTGTATGATGTTCTTGCC 57.175 39.130 0.00 0.00 38.85 4.52
2713 6177 9.516314 CGTACTTGTGATTTTCTCTACATGATA 57.484 33.333 0.00 0.00 0.00 2.15
2714 6178 8.035394 ACGTACTTGTGATTTTCTCTACATGAT 58.965 33.333 0.00 0.00 0.00 2.45
2715 6179 7.375834 ACGTACTTGTGATTTTCTCTACATGA 58.624 34.615 0.00 0.00 0.00 3.07
2716 6180 7.582435 ACGTACTTGTGATTTTCTCTACATG 57.418 36.000 0.00 0.00 0.00 3.21
2717 6181 8.301720 TGTACGTACTTGTGATTTTCTCTACAT 58.698 33.333 25.12 0.00 0.00 2.29
2718 6182 7.650890 TGTACGTACTTGTGATTTTCTCTACA 58.349 34.615 25.12 0.00 0.00 2.74
2719 6183 8.684973 ATGTACGTACTTGTGATTTTCTCTAC 57.315 34.615 25.12 0.00 0.00 2.59
2721 6185 9.302345 CATATGTACGTACTTGTGATTTTCTCT 57.698 33.333 24.78 0.00 0.00 3.10
2722 6186 9.297586 TCATATGTACGTACTTGTGATTTTCTC 57.702 33.333 26.48 1.11 30.49 2.87
2723 6187 9.084164 GTCATATGTACGTACTTGTGATTTTCT 57.916 33.333 30.08 2.54 35.26 2.52
2724 6188 9.084164 AGTCATATGTACGTACTTGTGATTTTC 57.916 33.333 30.08 21.61 35.26 2.29
2725 6189 8.997621 AGTCATATGTACGTACTTGTGATTTT 57.002 30.769 30.08 20.77 35.26 1.82
2726 6190 9.512435 GTAGTCATATGTACGTACTTGTGATTT 57.488 33.333 30.08 24.79 35.26 2.17
2727 6191 8.680001 TGTAGTCATATGTACGTACTTGTGATT 58.320 33.333 30.08 28.17 35.26 2.57
2728 6192 8.127327 GTGTAGTCATATGTACGTACTTGTGAT 58.873 37.037 30.08 23.21 35.26 3.06
2729 6193 7.119553 TGTGTAGTCATATGTACGTACTTGTGA 59.880 37.037 26.48 26.48 32.10 3.58
2730 6194 7.245604 TGTGTAGTCATATGTACGTACTTGTG 58.754 38.462 25.12 24.32 0.00 3.33
2731 6195 7.381766 TGTGTAGTCATATGTACGTACTTGT 57.618 36.000 25.12 15.09 0.00 3.16
2732 6196 7.966753 ACTTGTGTAGTCATATGTACGTACTTG 59.033 37.037 25.12 18.77 28.23 3.16
2733 6197 8.048534 ACTTGTGTAGTCATATGTACGTACTT 57.951 34.615 25.12 20.94 28.23 2.24
2734 6198 7.621428 ACTTGTGTAGTCATATGTACGTACT 57.379 36.000 25.12 13.70 28.23 2.73
2735 6199 8.581263 CAAACTTGTGTAGTCATATGTACGTAC 58.419 37.037 18.90 18.90 35.54 3.67
2736 6200 8.513774 TCAAACTTGTGTAGTCATATGTACGTA 58.486 33.333 1.90 0.00 35.54 3.57
2737 6201 7.372714 TCAAACTTGTGTAGTCATATGTACGT 58.627 34.615 1.90 0.00 35.54 3.57
2738 6202 7.806149 TCAAACTTGTGTAGTCATATGTACG 57.194 36.000 1.90 0.00 35.54 3.67
2741 6205 9.283768 TCAATTCAAACTTGTGTAGTCATATGT 57.716 29.630 1.90 0.00 35.54 2.29
2742 6206 9.546909 GTCAATTCAAACTTGTGTAGTCATATG 57.453 33.333 0.00 0.00 35.54 1.78
2743 6207 9.507329 AGTCAATTCAAACTTGTGTAGTCATAT 57.493 29.630 0.00 0.00 35.54 1.78
2744 6208 8.902540 AGTCAATTCAAACTTGTGTAGTCATA 57.097 30.769 0.00 0.00 35.54 2.15
2745 6209 7.807977 AGTCAATTCAAACTTGTGTAGTCAT 57.192 32.000 0.00 0.00 35.54 3.06
2746 6210 7.766738 TGTAGTCAATTCAAACTTGTGTAGTCA 59.233 33.333 0.00 0.00 35.54 3.41
2747 6211 8.062448 GTGTAGTCAATTCAAACTTGTGTAGTC 58.938 37.037 0.00 0.00 35.54 2.59
2748 6212 7.551262 TGTGTAGTCAATTCAAACTTGTGTAGT 59.449 33.333 0.00 0.00 39.32 2.73
2749 6213 7.915508 TGTGTAGTCAATTCAAACTTGTGTAG 58.084 34.615 0.00 0.00 0.00 2.74
2750 6214 7.851387 TGTGTAGTCAATTCAAACTTGTGTA 57.149 32.000 0.00 0.00 0.00 2.90
2751 6215 6.751514 TGTGTAGTCAATTCAAACTTGTGT 57.248 33.333 0.00 0.00 0.00 3.72
2752 6216 7.416817 TCATGTGTAGTCAATTCAAACTTGTG 58.583 34.615 0.00 0.00 0.00 3.33
2753 6217 7.566760 TCATGTGTAGTCAATTCAAACTTGT 57.433 32.000 0.00 0.00 0.00 3.16
2754 6218 7.112009 CGTTCATGTGTAGTCAATTCAAACTTG 59.888 37.037 0.00 0.00 0.00 3.16
2755 6219 7.011950 TCGTTCATGTGTAGTCAATTCAAACTT 59.988 33.333 0.00 0.00 0.00 2.66
2756 6220 6.481976 TCGTTCATGTGTAGTCAATTCAAACT 59.518 34.615 0.00 0.00 0.00 2.66
2757 6221 6.655062 TCGTTCATGTGTAGTCAATTCAAAC 58.345 36.000 0.00 0.00 0.00 2.93
2758 6222 6.852858 TCGTTCATGTGTAGTCAATTCAAA 57.147 33.333 0.00 0.00 0.00 2.69
2759 6223 6.852858 TTCGTTCATGTGTAGTCAATTCAA 57.147 33.333 0.00 0.00 0.00 2.69
2760 6224 7.360861 GGAATTCGTTCATGTGTAGTCAATTCA 60.361 37.037 0.00 0.00 31.97 2.57
2761 6225 6.961554 GGAATTCGTTCATGTGTAGTCAATTC 59.038 38.462 0.00 0.00 0.00 2.17
2762 6226 6.655003 AGGAATTCGTTCATGTGTAGTCAATT 59.345 34.615 0.00 0.00 0.00 2.32
2763 6227 6.092670 CAGGAATTCGTTCATGTGTAGTCAAT 59.907 38.462 0.00 0.00 0.00 2.57
2764 6228 5.408299 CAGGAATTCGTTCATGTGTAGTCAA 59.592 40.000 0.00 0.00 0.00 3.18
2765 6229 4.929211 CAGGAATTCGTTCATGTGTAGTCA 59.071 41.667 0.00 0.00 0.00 3.41
2766 6230 4.330074 CCAGGAATTCGTTCATGTGTAGTC 59.670 45.833 0.00 0.00 31.45 2.59
2767 6231 4.253685 CCAGGAATTCGTTCATGTGTAGT 58.746 43.478 0.00 0.00 31.45 2.73
2768 6232 3.063997 GCCAGGAATTCGTTCATGTGTAG 59.936 47.826 0.00 0.00 31.45 2.74
2769 6233 3.006940 GCCAGGAATTCGTTCATGTGTA 58.993 45.455 0.00 0.00 31.45 2.90
2770 6234 1.812571 GCCAGGAATTCGTTCATGTGT 59.187 47.619 0.00 0.00 31.45 3.72
2771 6235 1.811965 TGCCAGGAATTCGTTCATGTG 59.188 47.619 0.00 0.00 31.45 3.21
2772 6236 1.812571 GTGCCAGGAATTCGTTCATGT 59.187 47.619 0.00 0.00 31.45 3.21
2773 6237 1.133025 GGTGCCAGGAATTCGTTCATG 59.867 52.381 0.00 0.00 33.01 3.07
2774 6238 1.463674 GGTGCCAGGAATTCGTTCAT 58.536 50.000 0.00 0.00 0.00 2.57
2775 6239 0.953471 CGGTGCCAGGAATTCGTTCA 60.953 55.000 0.00 0.00 0.00 3.18
2776 6240 1.794222 CGGTGCCAGGAATTCGTTC 59.206 57.895 0.00 0.00 0.00 3.95
2777 6241 2.332654 GCGGTGCCAGGAATTCGTT 61.333 57.895 0.00 0.00 0.00 3.85
2778 6242 2.746277 GCGGTGCCAGGAATTCGT 60.746 61.111 0.00 0.00 0.00 3.85
2795 6259 5.469421 TGCATTTTGAAATAAAAGCCAGTGG 59.531 36.000 4.20 4.20 32.38 4.00
2796 6260 6.542574 TGCATTTTGAAATAAAAGCCAGTG 57.457 33.333 0.00 0.00 32.38 3.66
2797 6261 8.845413 TTATGCATTTTGAAATAAAAGCCAGT 57.155 26.923 3.54 0.00 32.38 4.00
2798 6262 9.545611 GTTTATGCATTTTGAAATAAAAGCCAG 57.454 29.630 3.54 0.00 32.38 4.85
2799 6263 8.510505 GGTTTATGCATTTTGAAATAAAAGCCA 58.489 29.630 3.54 0.00 32.38 4.75
2800 6264 8.510505 TGGTTTATGCATTTTGAAATAAAAGCC 58.489 29.630 3.54 0.79 32.38 4.35
2806 6270 9.995003 GGGATATGGTTTATGCATTTTGAAATA 57.005 29.630 3.54 0.00 0.00 1.40
2807 6271 7.938490 GGGGATATGGTTTATGCATTTTGAAAT 59.062 33.333 3.54 0.00 0.00 2.17
2808 6272 7.092712 TGGGGATATGGTTTATGCATTTTGAAA 60.093 33.333 3.54 0.00 0.00 2.69
2900 6364 4.274069 CAACATGTCTTGTCAGTTTCACG 58.726 43.478 0.00 0.00 37.68 4.35
3036 6537 1.132500 CTAGGGAAGGCCTGTTAGGG 58.868 60.000 5.69 0.00 35.37 3.53
3037 6538 1.132500 CCTAGGGAAGGCCTGTTAGG 58.868 60.000 5.69 11.67 38.97 2.69
3080 11482 3.656045 CGCGACTGGGCCGTTTTT 61.656 61.111 0.00 0.00 0.00 1.94
3089 11491 3.997064 CTTCTGGAGGCGCGACTGG 62.997 68.421 25.24 9.92 0.00 4.00
3090 11492 2.507992 CTTCTGGAGGCGCGACTG 60.508 66.667 25.24 4.88 0.00 3.51
3091 11493 4.443266 GCTTCTGGAGGCGCGACT 62.443 66.667 18.34 18.34 0.00 4.18
3098 11500 0.881796 GAAAAACGGGCTTCTGGAGG 59.118 55.000 0.00 0.00 0.00 4.30
3099 11501 0.517316 CGAAAAACGGGCTTCTGGAG 59.483 55.000 0.00 0.00 38.46 3.86
3100 11502 1.512156 GCGAAAAACGGGCTTCTGGA 61.512 55.000 0.00 0.00 42.83 3.86
3101 11503 1.081442 GCGAAAAACGGGCTTCTGG 60.081 57.895 0.00 0.00 42.83 3.86
3111 11513 4.097863 CCCGAGCCCGCGAAAAAC 62.098 66.667 8.23 0.00 0.00 2.43
3123 12465 2.742372 CACCAGTTTCGGCCCGAG 60.742 66.667 5.73 0.00 37.14 4.63
3146 12488 4.078516 CGGGTTCGTCCTGGGTCC 62.079 72.222 0.00 0.00 38.86 4.46
3187 14032 2.429069 CTTTTCGCTTGTGCCGGC 60.429 61.111 22.73 22.73 35.36 6.13
3219 14064 4.180946 CTCGACTCGCCGACAGGG 62.181 72.222 0.00 0.00 38.20 4.45
3220 14065 4.838486 GCTCGACTCGCCGACAGG 62.838 72.222 0.00 0.00 41.62 4.00
3230 14075 3.453679 GGGAAGAGGCGCTCGACT 61.454 66.667 7.64 0.00 35.36 4.18
3231 14076 4.856607 CGGGAAGAGGCGCTCGAC 62.857 72.222 7.64 3.00 35.36 4.20
3239 14084 1.003718 AAGAAACGGCGGGAAGAGG 60.004 57.895 13.24 0.00 0.00 3.69
3240 14085 1.019805 GGAAGAAACGGCGGGAAGAG 61.020 60.000 13.24 0.00 0.00 2.85
3242 14087 2.038837 GGGAAGAAACGGCGGGAAG 61.039 63.158 13.24 0.00 0.00 3.46
3243 14088 2.032987 GGGAAGAAACGGCGGGAA 59.967 61.111 13.24 0.00 0.00 3.97
3244 14089 4.382320 CGGGAAGAAACGGCGGGA 62.382 66.667 13.24 0.00 0.00 5.14
3247 14092 2.125202 AAAAGCGGGAAGAAACGGCG 62.125 55.000 4.80 4.80 38.93 6.46
3248 14093 0.386858 GAAAAGCGGGAAGAAACGGC 60.387 55.000 0.00 0.00 34.78 5.68
3249 14094 0.240145 GGAAAAGCGGGAAGAAACGG 59.760 55.000 0.00 0.00 0.00 4.44
3250 14095 0.240145 GGGAAAAGCGGGAAGAAACG 59.760 55.000 0.00 0.00 0.00 3.60
3253 14098 1.076014 GGGGGAAAAGCGGGAAGAA 59.924 57.895 0.00 0.00 0.00 2.52
3255 14100 1.977009 GTGGGGGAAAAGCGGGAAG 60.977 63.158 0.00 0.00 0.00 3.46
3256 14101 2.014033 AAGTGGGGGAAAAGCGGGAA 62.014 55.000 0.00 0.00 0.00 3.97
3257 14102 2.420466 GAAGTGGGGGAAAAGCGGGA 62.420 60.000 0.00 0.00 0.00 5.14
3258 14103 1.977009 GAAGTGGGGGAAAAGCGGG 60.977 63.158 0.00 0.00 0.00 6.13
3259 14104 1.977009 GGAAGTGGGGGAAAAGCGG 60.977 63.158 0.00 0.00 0.00 5.52
3261 14106 0.178932 AAGGGAAGTGGGGGAAAAGC 60.179 55.000 0.00 0.00 0.00 3.51
3262 14107 1.550179 GGAAGGGAAGTGGGGGAAAAG 60.550 57.143 0.00 0.00 0.00 2.27
3263 14108 0.485543 GGAAGGGAAGTGGGGGAAAA 59.514 55.000 0.00 0.00 0.00 2.29
3265 14110 0.479589 ATGGAAGGGAAGTGGGGGAA 60.480 55.000 0.00 0.00 0.00 3.97
3267 14112 0.551396 GTATGGAAGGGAAGTGGGGG 59.449 60.000 0.00 0.00 0.00 5.40
3268 14113 1.490910 GAGTATGGAAGGGAAGTGGGG 59.509 57.143 0.00 0.00 0.00 4.96
3269 14114 2.482494 AGAGTATGGAAGGGAAGTGGG 58.518 52.381 0.00 0.00 0.00 4.61
3270 14115 4.226168 AGAAAGAGTATGGAAGGGAAGTGG 59.774 45.833 0.00 0.00 0.00 4.00
3271 14116 5.428184 AGAAAGAGTATGGAAGGGAAGTG 57.572 43.478 0.00 0.00 0.00 3.16
3274 14119 5.101529 AGGAAGAAAGAGTATGGAAGGGAA 58.898 41.667 0.00 0.00 0.00 3.97
3276 14121 4.141597 GGAGGAAGAAAGAGTATGGAAGGG 60.142 50.000 0.00 0.00 0.00 3.95
3277 14122 4.141597 GGGAGGAAGAAAGAGTATGGAAGG 60.142 50.000 0.00 0.00 0.00 3.46
3278 14123 4.442192 CGGGAGGAAGAAAGAGTATGGAAG 60.442 50.000 0.00 0.00 0.00 3.46
3280 14125 3.031736 CGGGAGGAAGAAAGAGTATGGA 58.968 50.000 0.00 0.00 0.00 3.41
3281 14126 2.483889 GCGGGAGGAAGAAAGAGTATGG 60.484 54.545 0.00 0.00 0.00 2.74
3283 14128 2.696187 GAGCGGGAGGAAGAAAGAGTAT 59.304 50.000 0.00 0.00 0.00 2.12
3285 14130 0.899019 GAGCGGGAGGAAGAAAGAGT 59.101 55.000 0.00 0.00 0.00 3.24
3287 14132 1.890894 CGAGCGGGAGGAAGAAAGA 59.109 57.895 0.00 0.00 0.00 2.52
3288 14133 1.811679 GCGAGCGGGAGGAAGAAAG 60.812 63.158 0.00 0.00 0.00 2.62
3289 14134 2.264794 GCGAGCGGGAGGAAGAAA 59.735 61.111 0.00 0.00 0.00 2.52
3290 14135 3.771160 GGCGAGCGGGAGGAAGAA 61.771 66.667 0.00 0.00 0.00 2.52
3291 14136 4.761058 AGGCGAGCGGGAGGAAGA 62.761 66.667 0.00 0.00 0.00 2.87
3292 14137 4.214327 GAGGCGAGCGGGAGGAAG 62.214 72.222 0.00 0.00 0.00 3.46
3307 14152 4.431131 ATGGCGGCCAACTGGGAG 62.431 66.667 27.70 0.00 40.01 4.30
3308 14153 4.738998 CATGGCGGCCAACTGGGA 62.739 66.667 27.70 0.00 40.01 4.37
3318 14163 1.651240 CTTCTTCTGTGGCATGGCGG 61.651 60.000 15.27 7.51 0.00 6.13
3319 14164 0.957395 ACTTCTTCTGTGGCATGGCG 60.957 55.000 15.27 0.10 0.00 5.69
3320 14165 1.740025 GTACTTCTTCTGTGGCATGGC 59.260 52.381 13.29 13.29 0.00 4.40
3321 14166 2.002586 CGTACTTCTTCTGTGGCATGG 58.997 52.381 0.00 0.00 0.00 3.66
3322 14167 2.668457 GACGTACTTCTTCTGTGGCATG 59.332 50.000 0.00 0.00 0.00 4.06
3324 14169 1.335597 CGACGTACTTCTTCTGTGGCA 60.336 52.381 0.00 0.00 0.00 4.92
3325 14170 1.337821 CGACGTACTTCTTCTGTGGC 58.662 55.000 0.00 0.00 0.00 5.01
3326 14171 1.068472 AGCGACGTACTTCTTCTGTGG 60.068 52.381 0.00 0.00 0.00 4.17
3327 14172 1.979469 CAGCGACGTACTTCTTCTGTG 59.021 52.381 0.00 0.00 0.00 3.66
3329 14174 2.613730 TCAGCGACGTACTTCTTCTG 57.386 50.000 10.32 10.32 0.00 3.02
3331 14176 3.790288 GGTTATCAGCGACGTACTTCTTC 59.210 47.826 0.00 0.00 0.00 2.87
3334 14179 2.159338 TGGGTTATCAGCGACGTACTTC 60.159 50.000 0.00 0.00 0.00 3.01
3335 14180 1.820519 TGGGTTATCAGCGACGTACTT 59.179 47.619 0.00 0.00 0.00 2.24
3336 14181 1.133790 GTGGGTTATCAGCGACGTACT 59.866 52.381 0.00 0.00 0.00 2.73
3339 14184 0.319083 TTGTGGGTTATCAGCGACGT 59.681 50.000 0.00 0.00 32.12 4.34
3340 14185 0.999406 CTTGTGGGTTATCAGCGACG 59.001 55.000 0.00 0.00 32.12 5.12
3341 14186 2.094762 ACTTGTGGGTTATCAGCGAC 57.905 50.000 0.00 0.00 0.00 5.19
3342 14187 4.038763 CCTATACTTGTGGGTTATCAGCGA 59.961 45.833 0.00 0.00 0.00 4.93
3343 14188 4.307432 CCTATACTTGTGGGTTATCAGCG 58.693 47.826 0.00 0.00 0.00 5.18
3344 14189 4.505039 CCCCTATACTTGTGGGTTATCAGC 60.505 50.000 0.00 0.00 39.31 4.26
3345 14190 4.905456 TCCCCTATACTTGTGGGTTATCAG 59.095 45.833 0.00 0.00 39.31 2.90
3346 14191 4.898268 TCCCCTATACTTGTGGGTTATCA 58.102 43.478 0.00 0.00 39.31 2.15
3347 14192 6.238648 CAATCCCCTATACTTGTGGGTTATC 58.761 44.000 0.00 0.00 39.31 1.75
3348 14193 5.457633 GCAATCCCCTATACTTGTGGGTTAT 60.458 44.000 0.00 0.00 39.31 1.89
3350 14195 3.372675 GCAATCCCCTATACTTGTGGGTT 60.373 47.826 0.00 0.00 39.31 4.11
3351 14196 2.174854 GCAATCCCCTATACTTGTGGGT 59.825 50.000 0.00 0.00 39.31 4.51
3354 14199 4.269183 TGTTGCAATCCCCTATACTTGTG 58.731 43.478 0.59 0.00 0.00 3.33
3355 14200 4.526970 CTGTTGCAATCCCCTATACTTGT 58.473 43.478 0.59 0.00 0.00 3.16
3356 14201 3.316308 GCTGTTGCAATCCCCTATACTTG 59.684 47.826 0.59 0.00 39.41 3.16
3357 14202 3.203040 AGCTGTTGCAATCCCCTATACTT 59.797 43.478 0.59 0.00 42.74 2.24
3358 14203 2.780010 AGCTGTTGCAATCCCCTATACT 59.220 45.455 0.59 0.00 42.74 2.12
3360 14205 3.951563 AAGCTGTTGCAATCCCCTATA 57.048 42.857 0.59 0.00 42.74 1.31
3361 14206 2.834638 AAGCTGTTGCAATCCCCTAT 57.165 45.000 0.59 0.00 42.74 2.57
3365 14210 0.881118 TCGAAAGCTGTTGCAATCCC 59.119 50.000 0.59 0.00 42.74 3.85
3366 14211 1.135575 CCTCGAAAGCTGTTGCAATCC 60.136 52.381 0.59 0.00 42.74 3.01
3367 14212 1.135575 CCCTCGAAAGCTGTTGCAATC 60.136 52.381 0.59 0.00 42.74 2.67
3369 14214 0.465460 ACCCTCGAAAGCTGTTGCAA 60.465 50.000 0.00 0.00 42.74 4.08
3370 14215 0.394938 TACCCTCGAAAGCTGTTGCA 59.605 50.000 0.00 0.00 42.74 4.08
3371 14216 1.079503 CTACCCTCGAAAGCTGTTGC 58.920 55.000 0.00 0.00 40.05 4.17
3372 14217 2.028930 ACTCTACCCTCGAAAGCTGTTG 60.029 50.000 0.00 0.00 0.00 3.33
3373 14218 2.249139 ACTCTACCCTCGAAAGCTGTT 58.751 47.619 0.00 0.00 0.00 3.16
3374 14219 1.926108 ACTCTACCCTCGAAAGCTGT 58.074 50.000 0.00 0.00 0.00 4.40
3377 14222 4.650754 TGAATACTCTACCCTCGAAAGC 57.349 45.455 0.00 0.00 0.00 3.51
3378 14223 5.349809 GGTTGAATACTCTACCCTCGAAAG 58.650 45.833 0.00 0.00 40.45 2.62
3379 14224 5.334724 GGTTGAATACTCTACCCTCGAAA 57.665 43.478 0.00 0.00 40.45 3.46
3380 14225 4.996788 GGTTGAATACTCTACCCTCGAA 57.003 45.455 0.00 0.00 40.45 3.71
3392 14237 9.796120 TCGAATCAATAAATTTGGGTTGAATAC 57.204 29.630 15.01 10.41 34.62 1.89
3393 14238 9.796120 GTCGAATCAATAAATTTGGGTTGAATA 57.204 29.630 15.01 4.16 34.62 1.75
3394 14239 8.310382 TGTCGAATCAATAAATTTGGGTTGAAT 58.690 29.630 15.01 9.74 34.62 2.57
3395 14240 7.596995 GTGTCGAATCAATAAATTTGGGTTGAA 59.403 33.333 15.01 2.31 34.62 2.69
3397 14242 6.865726 TGTGTCGAATCAATAAATTTGGGTTG 59.134 34.615 0.00 3.99 0.00 3.77
3398 14243 6.987386 TGTGTCGAATCAATAAATTTGGGTT 58.013 32.000 0.00 0.00 0.00 4.11
3399 14244 6.582677 TGTGTCGAATCAATAAATTTGGGT 57.417 33.333 0.00 0.00 0.00 4.51
3400 14245 6.531240 CCTTGTGTCGAATCAATAAATTTGGG 59.469 38.462 0.00 0.00 0.00 4.12
3401 14246 7.090173 ACCTTGTGTCGAATCAATAAATTTGG 58.910 34.615 0.00 3.81 0.00 3.28
3402 14247 8.519492 AACCTTGTGTCGAATCAATAAATTTG 57.481 30.769 0.00 0.00 0.00 2.32
3403 14248 9.840427 CTAACCTTGTGTCGAATCAATAAATTT 57.160 29.630 0.00 0.00 0.00 1.82
3406 14251 6.128117 GGCTAACCTTGTGTCGAATCAATAAA 60.128 38.462 4.42 0.00 0.00 1.40
3407 14252 5.353123 GGCTAACCTTGTGTCGAATCAATAA 59.647 40.000 4.42 0.00 0.00 1.40
3410 14255 3.071479 GGCTAACCTTGTGTCGAATCAA 58.929 45.455 0.00 0.00 0.00 2.57
3411 14256 2.037902 TGGCTAACCTTGTGTCGAATCA 59.962 45.455 0.00 0.00 36.63 2.57
3413 14258 2.851263 TGGCTAACCTTGTGTCGAAT 57.149 45.000 0.00 0.00 36.63 3.34
3414 14259 2.623878 TTGGCTAACCTTGTGTCGAA 57.376 45.000 0.00 0.00 36.63 3.71
3416 14261 3.701532 TTTTTGGCTAACCTTGTGTCG 57.298 42.857 0.00 0.00 36.63 4.35
3434 14279 9.618890 TCAGCTGCTAATACTTGAGAATATTTT 57.381 29.630 9.47 0.00 0.00 1.82
3435 14280 9.270640 CTCAGCTGCTAATACTTGAGAATATTT 57.729 33.333 9.47 0.00 0.00 1.40
3437 14282 7.961351 ACTCAGCTGCTAATACTTGAGAATAT 58.039 34.615 9.47 0.00 0.00 1.28
3438 14283 7.353414 ACTCAGCTGCTAATACTTGAGAATA 57.647 36.000 9.47 0.00 0.00 1.75
3439 14284 6.232581 ACTCAGCTGCTAATACTTGAGAAT 57.767 37.500 9.47 0.00 0.00 2.40
3441 14286 5.047021 ACAACTCAGCTGCTAATACTTGAGA 60.047 40.000 9.47 1.04 0.00 3.27
3442 14287 5.174395 ACAACTCAGCTGCTAATACTTGAG 58.826 41.667 9.47 6.55 0.00 3.02
3443 14288 5.152623 ACAACTCAGCTGCTAATACTTGA 57.847 39.130 9.47 0.00 0.00 3.02
3444 14289 4.931601 TGACAACTCAGCTGCTAATACTTG 59.068 41.667 9.47 4.80 0.00 3.16
3445 14290 5.152623 TGACAACTCAGCTGCTAATACTT 57.847 39.130 9.47 0.00 0.00 2.24
3446 14291 4.808414 TGACAACTCAGCTGCTAATACT 57.192 40.909 9.47 0.00 0.00 2.12
3449 14294 5.005740 TGAATTGACAACTCAGCTGCTAAT 58.994 37.500 9.47 0.00 0.00 1.73
3451 14296 4.006780 TGAATTGACAACTCAGCTGCTA 57.993 40.909 9.47 0.00 0.00 3.49
3452 14297 2.854963 TGAATTGACAACTCAGCTGCT 58.145 42.857 9.47 0.00 0.00 4.24
3453 14298 3.303406 GTTGAATTGACAACTCAGCTGC 58.697 45.455 9.47 0.00 44.34 5.25
3454 14299 3.316029 TGGTTGAATTGACAACTCAGCTG 59.684 43.478 7.63 7.63 46.17 4.24
3455 14300 3.316308 GTGGTTGAATTGACAACTCAGCT 59.684 43.478 12.25 0.00 46.17 4.24
3456 14301 3.066621 TGTGGTTGAATTGACAACTCAGC 59.933 43.478 5.07 5.07 46.17 4.26
3457 14302 4.498009 GGTGTGGTTGAATTGACAACTCAG 60.498 45.833 0.00 0.00 46.17 3.35
3458 14303 3.380004 GGTGTGGTTGAATTGACAACTCA 59.620 43.478 9.21 0.00 46.17 3.41
3459 14304 3.964909 GGTGTGGTTGAATTGACAACTC 58.035 45.455 9.21 0.00 46.17 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.