Multiple sequence alignment - TraesCS7A01G139700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G139700 chr7A 100.000 3271 0 0 1 3271 91495691 91498961 0.000000e+00 6041.0
1 TraesCS7A01G139700 chr7A 87.451 255 27 4 2785 3034 148252126 148252380 4.130000e-74 289.0
2 TraesCS7A01G139700 chr7D 93.928 1581 50 12 1158 2715 89936585 89938142 0.000000e+00 2346.0
3 TraesCS7A01G139700 chr7D 94.542 568 27 3 2705 3271 89939398 89939962 0.000000e+00 874.0
4 TraesCS7A01G139700 chr7D 93.111 450 18 8 716 1162 89896542 89896981 0.000000e+00 647.0
5 TraesCS7A01G139700 chr7D 85.294 238 20 6 1 224 89895941 89896177 7.060000e-57 231.0
6 TraesCS7A01G139700 chr7B 89.715 1332 75 22 719 2000 41039075 41040394 0.000000e+00 1644.0
7 TraesCS7A01G139700 chr7B 88.287 794 52 17 2425 3189 41041061 41041842 0.000000e+00 913.0
8 TraesCS7A01G139700 chr7B 94.030 402 21 3 2019 2420 41040534 41040932 1.000000e-169 606.0
9 TraesCS7A01G139700 chr7B 76.087 184 33 7 228 408 690903006 690902831 5.820000e-13 86.1
10 TraesCS7A01G139700 chr5A 78.978 685 119 19 1666 2333 605249761 605250437 8.330000e-121 444.0
11 TraesCS7A01G139700 chr5D 78.855 629 115 10 1676 2290 483810797 483811421 3.040000e-110 409.0
12 TraesCS7A01G139700 chr5D 88.189 254 26 2 2785 3034 238948226 238948479 1.910000e-77 300.0
13 TraesCS7A01G139700 chr5D 73.952 668 130 26 955 1606 564748977 564748338 2.540000e-56 230.0
14 TraesCS7A01G139700 chr5B 77.584 687 108 24 927 1606 595018364 595019011 1.110000e-99 374.0
15 TraesCS7A01G139700 chr5B 80.080 502 91 8 1841 2340 595019241 595019735 6.670000e-97 364.0
16 TraesCS7A01G139700 chr4A 77.027 592 119 12 1676 2259 606339771 606340353 1.130000e-84 324.0
17 TraesCS7A01G139700 chr4A 81.102 127 21 2 1864 1987 612532789 612532915 7.470000e-17 99.0
18 TraesCS7A01G139700 chr3A 77.027 592 119 11 1676 2259 744098168 744097586 1.130000e-84 324.0
19 TraesCS7A01G139700 chr3A 87.451 255 27 3 2785 3034 443675526 443675780 4.130000e-74 289.0
20 TraesCS7A01G139700 chr4D 87.843 255 26 4 2785 3034 161262220 161262474 8.880000e-76 294.0
21 TraesCS7A01G139700 chr2A 87.843 255 26 4 2785 3034 118486181 118486435 8.880000e-76 294.0
22 TraesCS7A01G139700 chr2A 87.451 255 27 4 2785 3034 390274732 390274986 4.130000e-74 289.0
23 TraesCS7A01G139700 chr6A 87.500 256 26 4 2785 3034 13077478 13077733 1.150000e-74 291.0
24 TraesCS7A01G139700 chr3D 78.815 439 81 9 1864 2295 609233221 609233654 5.340000e-73 285.0
25 TraesCS7A01G139700 chr3B 77.727 440 84 11 1864 2295 819949176 819949609 1.160000e-64 257.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G139700 chr7A 91495691 91498961 3270 False 6041.000000 6041 100.000000 1 3271 1 chr7A.!!$F1 3270
1 TraesCS7A01G139700 chr7D 89936585 89939962 3377 False 1610.000000 2346 94.235000 1158 3271 2 chr7D.!!$F2 2113
2 TraesCS7A01G139700 chr7D 89895941 89896981 1040 False 439.000000 647 89.202500 1 1162 2 chr7D.!!$F1 1161
3 TraesCS7A01G139700 chr7B 41039075 41041842 2767 False 1054.333333 1644 90.677333 719 3189 3 chr7B.!!$F1 2470
4 TraesCS7A01G139700 chr5A 605249761 605250437 676 False 444.000000 444 78.978000 1666 2333 1 chr5A.!!$F1 667
5 TraesCS7A01G139700 chr5D 483810797 483811421 624 False 409.000000 409 78.855000 1676 2290 1 chr5D.!!$F2 614
6 TraesCS7A01G139700 chr5D 564748338 564748977 639 True 230.000000 230 73.952000 955 1606 1 chr5D.!!$R1 651
7 TraesCS7A01G139700 chr5B 595018364 595019735 1371 False 369.000000 374 78.832000 927 2340 2 chr5B.!!$F1 1413
8 TraesCS7A01G139700 chr4A 606339771 606340353 582 False 324.000000 324 77.027000 1676 2259 1 chr4A.!!$F1 583
9 TraesCS7A01G139700 chr3A 744097586 744098168 582 True 324.000000 324 77.027000 1676 2259 1 chr3A.!!$R1 583

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
377 736 0.034337 GCCTCACGGTTAACAGTCCA 59.966 55.0 8.52 0.0 0.0 4.02 F
381 740 0.034896 CACGGTTAACAGTCCAGCCT 59.965 55.0 8.52 0.0 0.0 4.58 F
477 836 0.035739 GGGCGCCCTTCCGAATATTA 59.964 55.0 38.76 0.0 0.0 0.98 F
1318 1697 0.181587 TTCCGGCCTGAACTTGAACA 59.818 50.0 5.36 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1212 1580 0.456312 GAGTAAGGTGTCGACGCTGG 60.456 60.000 26.79 0.0 0.00 4.85 R
1410 1813 0.460987 GTGAGGAGGAGGCGATGTTG 60.461 60.000 0.00 0.0 0.00 3.33 R
1794 2255 1.339631 CCGGCCCAGACAGTCATTTTA 60.340 52.381 2.66 0.0 0.00 1.52 R
3182 5193 1.747709 AGAGACACTGCCATGCAATC 58.252 50.000 0.00 0.0 38.41 2.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 44 2.233922 GAGGGAACATGGAGAACTCGAA 59.766 50.000 0.00 0.00 0.00 3.71
49 51 0.386858 TGGAGAACTCGAACTTCGCG 60.387 55.000 0.00 0.00 40.21 5.87
61 63 2.678934 TTCGCGTAGAGCCACCCT 60.679 61.111 5.77 0.00 44.76 4.34
62 64 1.378911 TTCGCGTAGAGCCACCCTA 60.379 57.895 5.77 0.00 44.76 3.53
83 85 1.066454 TCTCGAACGAAGTGCAAGTCA 59.934 47.619 0.00 0.00 45.00 3.41
84 86 1.453524 CTCGAACGAAGTGCAAGTCAG 59.546 52.381 0.00 0.00 45.00 3.51
103 105 3.505680 TCAGTATCAATGTGTTTGGTGCC 59.494 43.478 0.00 0.00 31.93 5.01
105 107 0.975887 ATCAATGTGTTTGGTGCCCC 59.024 50.000 0.00 0.00 35.92 5.80
112 114 0.110678 TGTTTGGTGCCCCGATGTTA 59.889 50.000 0.00 0.00 0.00 2.41
134 136 0.664761 CCGGGTTGCATGCAAGATAG 59.335 55.000 32.64 21.97 36.52 2.08
144 146 0.533531 TGCAAGATAGGATGCGCTGG 60.534 55.000 9.73 0.00 45.47 4.85
150 152 0.253044 ATAGGATGCGCTGGTGTTGT 59.747 50.000 9.73 0.00 0.00 3.32
158 173 0.532862 CGCTGGTGTTGTCAGGTCTT 60.533 55.000 0.00 0.00 33.16 3.01
267 626 9.189156 AGCTAAGCTTTATTATCAAAATCCACA 57.811 29.630 3.20 0.00 33.89 4.17
268 627 9.237846 GCTAAGCTTTATTATCAAAATCCACAC 57.762 33.333 3.20 0.00 0.00 3.82
269 628 9.438291 CTAAGCTTTATTATCAAAATCCACACG 57.562 33.333 3.20 0.00 0.00 4.49
270 629 7.624360 AGCTTTATTATCAAAATCCACACGA 57.376 32.000 0.00 0.00 0.00 4.35
271 630 7.697691 AGCTTTATTATCAAAATCCACACGAG 58.302 34.615 0.00 0.00 0.00 4.18
272 631 6.912591 GCTTTATTATCAAAATCCACACGAGG 59.087 38.462 0.00 0.00 0.00 4.63
273 632 7.415206 GCTTTATTATCAAAATCCACACGAGGT 60.415 37.037 0.00 0.00 0.00 3.85
283 642 2.691409 CACACGAGGTGGGAATACAT 57.309 50.000 0.42 0.00 39.67 2.29
284 643 2.985896 CACACGAGGTGGGAATACATT 58.014 47.619 0.42 0.00 39.67 2.71
285 644 2.936498 CACACGAGGTGGGAATACATTC 59.064 50.000 0.42 0.00 39.67 2.67
286 645 2.201732 CACGAGGTGGGAATACATTCG 58.798 52.381 0.00 0.00 37.67 3.34
287 646 1.138266 ACGAGGTGGGAATACATTCGG 59.862 52.381 0.00 0.00 37.67 4.30
288 647 1.411246 CGAGGTGGGAATACATTCGGA 59.589 52.381 0.00 0.00 37.67 4.55
289 648 2.037251 CGAGGTGGGAATACATTCGGAT 59.963 50.000 0.00 0.00 37.67 4.18
290 649 3.665190 GAGGTGGGAATACATTCGGATC 58.335 50.000 0.00 0.00 37.67 3.36
291 650 3.045634 AGGTGGGAATACATTCGGATCA 58.954 45.455 0.00 0.00 37.67 2.92
292 651 3.652869 AGGTGGGAATACATTCGGATCAT 59.347 43.478 0.00 0.00 37.67 2.45
293 652 3.753272 GGTGGGAATACATTCGGATCATG 59.247 47.826 0.00 0.00 37.67 3.07
294 653 3.189287 GTGGGAATACATTCGGATCATGC 59.811 47.826 0.00 0.00 37.67 4.06
295 654 2.416547 GGGAATACATTCGGATCATGCG 59.583 50.000 0.00 0.00 37.67 4.73
296 655 2.416547 GGAATACATTCGGATCATGCGG 59.583 50.000 0.00 0.00 37.67 5.69
297 656 2.099141 ATACATTCGGATCATGCGGG 57.901 50.000 0.00 0.00 0.00 6.13
298 657 0.034756 TACATTCGGATCATGCGGGG 59.965 55.000 0.00 0.00 0.00 5.73
299 658 1.227943 CATTCGGATCATGCGGGGT 60.228 57.895 0.00 0.00 0.00 4.95
300 659 0.034756 CATTCGGATCATGCGGGGTA 59.965 55.000 0.00 0.00 0.00 3.69
301 660 0.321671 ATTCGGATCATGCGGGGTAG 59.678 55.000 0.00 0.00 0.00 3.18
302 661 2.357517 CGGATCATGCGGGGTAGC 60.358 66.667 0.00 0.00 37.71 3.58
303 662 2.032681 GGATCATGCGGGGTAGCC 59.967 66.667 1.07 1.07 36.02 3.93
304 663 2.818169 GGATCATGCGGGGTAGCCA 61.818 63.158 14.06 0.00 36.02 4.75
305 664 1.302033 GATCATGCGGGGTAGCCAG 60.302 63.158 14.06 10.36 36.02 4.85
306 665 3.482232 ATCATGCGGGGTAGCCAGC 62.482 63.158 26.53 26.53 36.02 4.85
311 670 4.162690 CGGGGTAGCCAGCCAGAC 62.163 72.222 14.06 0.00 44.67 3.51
312 671 4.162690 GGGGTAGCCAGCCAGACG 62.163 72.222 14.06 0.00 44.67 4.18
313 672 3.391382 GGGTAGCCAGCCAGACGT 61.391 66.667 5.96 0.00 42.27 4.34
314 673 2.184579 GGTAGCCAGCCAGACGTC 59.815 66.667 7.70 7.70 0.00 4.34
315 674 2.202623 GTAGCCAGCCAGACGTCG 60.203 66.667 10.46 5.16 0.00 5.12
316 675 4.129737 TAGCCAGCCAGACGTCGC 62.130 66.667 10.46 8.70 0.00 5.19
327 686 4.039357 ACGTCGCGTCCTGGACTG 62.039 66.667 23.49 17.39 33.69 3.51
328 687 3.733960 CGTCGCGTCCTGGACTGA 61.734 66.667 23.49 17.76 0.00 3.41
329 688 2.179517 GTCGCGTCCTGGACTGAG 59.820 66.667 23.49 17.66 0.00 3.35
330 689 2.033602 TCGCGTCCTGGACTGAGA 59.966 61.111 23.49 19.38 0.00 3.27
331 690 2.179517 CGCGTCCTGGACTGAGAC 59.820 66.667 23.49 7.72 0.00 3.36
332 691 2.336478 CGCGTCCTGGACTGAGACT 61.336 63.158 23.49 0.00 0.00 3.24
333 692 1.025113 CGCGTCCTGGACTGAGACTA 61.025 60.000 23.49 0.00 0.00 2.59
334 693 1.394618 GCGTCCTGGACTGAGACTAT 58.605 55.000 23.49 0.00 0.00 2.12
335 694 1.066303 GCGTCCTGGACTGAGACTATG 59.934 57.143 23.49 6.73 0.00 2.23
336 695 2.644676 CGTCCTGGACTGAGACTATGA 58.355 52.381 23.49 0.00 0.00 2.15
337 696 3.017442 CGTCCTGGACTGAGACTATGAA 58.983 50.000 23.49 0.00 0.00 2.57
338 697 3.444034 CGTCCTGGACTGAGACTATGAAA 59.556 47.826 23.49 0.00 0.00 2.69
339 698 4.082190 CGTCCTGGACTGAGACTATGAAAA 60.082 45.833 23.49 0.00 0.00 2.29
340 699 5.394663 CGTCCTGGACTGAGACTATGAAAAT 60.395 44.000 23.49 0.00 0.00 1.82
341 700 5.814705 GTCCTGGACTGAGACTATGAAAATG 59.185 44.000 19.53 0.00 0.00 2.32
342 701 4.574013 CCTGGACTGAGACTATGAAAATGC 59.426 45.833 0.00 0.00 0.00 3.56
343 702 5.426504 CTGGACTGAGACTATGAAAATGCT 58.573 41.667 0.00 0.00 0.00 3.79
344 703 5.809001 TGGACTGAGACTATGAAAATGCTT 58.191 37.500 0.00 0.00 0.00 3.91
345 704 6.946340 TGGACTGAGACTATGAAAATGCTTA 58.054 36.000 0.00 0.00 0.00 3.09
346 705 7.044181 TGGACTGAGACTATGAAAATGCTTAG 58.956 38.462 0.00 0.00 0.00 2.18
347 706 6.018343 GGACTGAGACTATGAAAATGCTTAGC 60.018 42.308 0.00 0.00 0.00 3.09
348 707 6.648192 ACTGAGACTATGAAAATGCTTAGCT 58.352 36.000 5.60 0.00 0.00 3.32
349 708 7.786030 ACTGAGACTATGAAAATGCTTAGCTA 58.214 34.615 5.60 0.00 0.00 3.32
350 709 8.260818 ACTGAGACTATGAAAATGCTTAGCTAA 58.739 33.333 5.60 5.94 0.00 3.09
351 710 9.102757 CTGAGACTATGAAAATGCTTAGCTAAA 57.897 33.333 7.74 0.00 0.00 1.85
352 711 8.883731 TGAGACTATGAAAATGCTTAGCTAAAC 58.116 33.333 7.74 3.59 0.00 2.01
353 712 9.103861 GAGACTATGAAAATGCTTAGCTAAACT 57.896 33.333 7.74 0.00 0.00 2.66
358 717 7.333528 TGAAAATGCTTAGCTAAACTATGGG 57.666 36.000 7.74 0.00 0.00 4.00
359 718 5.774498 AAATGCTTAGCTAAACTATGGGC 57.226 39.130 7.74 6.18 0.00 5.36
360 719 3.208747 TGCTTAGCTAAACTATGGGCC 57.791 47.619 7.74 0.00 0.00 5.80
361 720 2.777692 TGCTTAGCTAAACTATGGGCCT 59.222 45.455 7.74 0.00 0.00 5.19
362 721 3.181454 TGCTTAGCTAAACTATGGGCCTC 60.181 47.826 7.74 0.00 0.00 4.70
363 722 3.181454 GCTTAGCTAAACTATGGGCCTCA 60.181 47.826 7.74 0.00 0.00 3.86
364 723 4.381411 CTTAGCTAAACTATGGGCCTCAC 58.619 47.826 7.74 0.00 0.00 3.51
365 724 1.139058 AGCTAAACTATGGGCCTCACG 59.861 52.381 4.53 0.00 0.00 4.35
366 725 1.810412 GCTAAACTATGGGCCTCACGG 60.810 57.143 4.53 0.00 0.00 4.94
367 726 1.485066 CTAAACTATGGGCCTCACGGT 59.515 52.381 4.53 0.00 0.00 4.83
368 727 0.696501 AAACTATGGGCCTCACGGTT 59.303 50.000 4.53 5.41 0.00 4.44
369 728 1.575419 AACTATGGGCCTCACGGTTA 58.425 50.000 4.53 0.00 0.00 2.85
370 729 1.575419 ACTATGGGCCTCACGGTTAA 58.425 50.000 4.53 0.00 0.00 2.01
371 730 1.208776 ACTATGGGCCTCACGGTTAAC 59.791 52.381 4.53 0.00 0.00 2.01
372 731 1.208535 CTATGGGCCTCACGGTTAACA 59.791 52.381 4.53 0.00 0.00 2.41
373 732 0.035439 ATGGGCCTCACGGTTAACAG 60.035 55.000 4.53 6.02 0.00 3.16
374 733 1.373812 GGGCCTCACGGTTAACAGT 59.626 57.895 8.10 6.77 0.00 3.55
375 734 0.672711 GGGCCTCACGGTTAACAGTC 60.673 60.000 8.52 0.00 0.00 3.51
376 735 0.672711 GGCCTCACGGTTAACAGTCC 60.673 60.000 8.52 3.71 0.00 3.85
377 736 0.034337 GCCTCACGGTTAACAGTCCA 59.966 55.000 8.52 0.00 0.00 4.02
378 737 1.939838 GCCTCACGGTTAACAGTCCAG 60.940 57.143 8.52 7.71 0.00 3.86
379 738 1.429463 CTCACGGTTAACAGTCCAGC 58.571 55.000 8.52 0.00 0.00 4.85
380 739 0.034337 TCACGGTTAACAGTCCAGCC 59.966 55.000 8.52 0.00 0.00 4.85
381 740 0.034896 CACGGTTAACAGTCCAGCCT 59.965 55.000 8.52 0.00 0.00 4.58
382 741 0.763035 ACGGTTAACAGTCCAGCCTT 59.237 50.000 8.10 0.00 0.00 4.35
383 742 1.270678 ACGGTTAACAGTCCAGCCTTC 60.271 52.381 8.10 0.00 0.00 3.46
384 743 1.270625 CGGTTAACAGTCCAGCCTTCA 60.271 52.381 8.10 0.00 0.00 3.02
385 744 2.808933 CGGTTAACAGTCCAGCCTTCAA 60.809 50.000 8.10 0.00 0.00 2.69
386 745 3.219281 GGTTAACAGTCCAGCCTTCAAA 58.781 45.455 8.10 0.00 0.00 2.69
387 746 3.634910 GGTTAACAGTCCAGCCTTCAAAA 59.365 43.478 8.10 0.00 0.00 2.44
388 747 4.098807 GGTTAACAGTCCAGCCTTCAAAAA 59.901 41.667 8.10 0.00 0.00 1.94
389 748 5.221441 GGTTAACAGTCCAGCCTTCAAAAAT 60.221 40.000 8.10 0.00 0.00 1.82
390 749 4.326504 AACAGTCCAGCCTTCAAAAATG 57.673 40.909 0.00 0.00 0.00 2.32
391 750 3.565307 ACAGTCCAGCCTTCAAAAATGA 58.435 40.909 0.00 0.00 0.00 2.57
392 751 3.960102 ACAGTCCAGCCTTCAAAAATGAA 59.040 39.130 0.00 0.00 0.00 2.57
393 752 4.405358 ACAGTCCAGCCTTCAAAAATGAAA 59.595 37.500 0.00 0.00 0.00 2.69
394 753 5.070847 ACAGTCCAGCCTTCAAAAATGAAAT 59.929 36.000 0.00 0.00 0.00 2.17
395 754 5.993441 CAGTCCAGCCTTCAAAAATGAAATT 59.007 36.000 0.00 0.00 38.98 1.82
396 755 7.153985 CAGTCCAGCCTTCAAAAATGAAATTA 58.846 34.615 0.00 0.00 33.67 1.40
397 756 7.116805 CAGTCCAGCCTTCAAAAATGAAATTAC 59.883 37.037 0.00 0.00 33.67 1.89
398 757 6.928492 GTCCAGCCTTCAAAAATGAAATTACA 59.072 34.615 0.00 0.00 33.67 2.41
399 758 7.440856 GTCCAGCCTTCAAAAATGAAATTACAA 59.559 33.333 0.00 0.00 33.67 2.41
400 759 8.156165 TCCAGCCTTCAAAAATGAAATTACAAT 58.844 29.630 0.00 0.00 33.67 2.71
401 760 8.785946 CCAGCCTTCAAAAATGAAATTACAATT 58.214 29.630 0.00 0.00 33.67 2.32
428 787 8.926092 AAACTTAAAGCTCCAAGTTAATCTCT 57.074 30.769 20.11 6.53 42.62 3.10
429 788 7.913674 ACTTAAAGCTCCAAGTTAATCTCTG 57.086 36.000 7.01 0.00 30.89 3.35
430 789 7.454225 ACTTAAAGCTCCAAGTTAATCTCTGT 58.546 34.615 7.01 0.00 30.89 3.41
431 790 8.594550 ACTTAAAGCTCCAAGTTAATCTCTGTA 58.405 33.333 7.01 0.00 30.89 2.74
432 791 9.436957 CTTAAAGCTCCAAGTTAATCTCTGTAA 57.563 33.333 0.00 0.00 0.00 2.41
433 792 9.959721 TTAAAGCTCCAAGTTAATCTCTGTAAT 57.040 29.630 0.00 0.00 0.00 1.89
434 793 7.856145 AAGCTCCAAGTTAATCTCTGTAATG 57.144 36.000 0.00 0.00 0.00 1.90
435 794 7.187824 AGCTCCAAGTTAATCTCTGTAATGA 57.812 36.000 0.00 0.00 0.00 2.57
436 795 7.800092 AGCTCCAAGTTAATCTCTGTAATGAT 58.200 34.615 0.00 0.00 0.00 2.45
437 796 8.928448 AGCTCCAAGTTAATCTCTGTAATGATA 58.072 33.333 0.00 0.00 0.00 2.15
438 797 9.202273 GCTCCAAGTTAATCTCTGTAATGATAG 57.798 37.037 0.00 0.00 0.00 2.08
441 800 9.482627 CCAAGTTAATCTCTGTAATGATAGACC 57.517 37.037 0.00 0.00 0.00 3.85
442 801 9.482627 CAAGTTAATCTCTGTAATGATAGACCC 57.517 37.037 0.00 0.00 0.00 4.46
443 802 8.783660 AGTTAATCTCTGTAATGATAGACCCA 57.216 34.615 0.00 0.00 0.00 4.51
444 803 9.386122 AGTTAATCTCTGTAATGATAGACCCAT 57.614 33.333 0.00 0.00 0.00 4.00
456 815 8.728596 AATGATAGACCCATATATAGCTACCC 57.271 38.462 0.00 0.00 0.00 3.69
457 816 6.621394 TGATAGACCCATATATAGCTACCCC 58.379 44.000 0.00 0.00 0.00 4.95
458 817 3.912248 AGACCCATATATAGCTACCCCG 58.088 50.000 0.00 0.00 0.00 5.73
459 818 2.963782 GACCCATATATAGCTACCCCGG 59.036 54.545 0.00 0.00 0.00 5.73
460 819 2.326428 CCCATATATAGCTACCCCGGG 58.674 57.143 15.80 15.80 0.00 5.73
461 820 1.692519 CCATATATAGCTACCCCGGGC 59.307 57.143 17.73 2.92 0.00 6.13
462 821 1.340248 CATATATAGCTACCCCGGGCG 59.660 57.143 17.73 11.64 0.00 6.13
463 822 1.039233 TATATAGCTACCCCGGGCGC 61.039 60.000 17.73 17.30 0.00 6.53
475 834 2.430367 GGGCGCCCTTCCGAATAT 59.570 61.111 38.76 0.00 0.00 1.28
476 835 1.228154 GGGCGCCCTTCCGAATATT 60.228 57.895 38.76 0.00 0.00 1.28
477 836 0.035739 GGGCGCCCTTCCGAATATTA 59.964 55.000 38.76 0.00 0.00 0.98
478 837 1.339727 GGGCGCCCTTCCGAATATTAT 60.340 52.381 38.76 0.00 0.00 1.28
479 838 2.433436 GGCGCCCTTCCGAATATTATT 58.567 47.619 18.11 0.00 0.00 1.40
480 839 2.418976 GGCGCCCTTCCGAATATTATTC 59.581 50.000 18.11 6.37 0.00 1.75
481 840 3.071479 GCGCCCTTCCGAATATTATTCA 58.929 45.455 15.00 0.00 0.00 2.57
482 841 3.120304 GCGCCCTTCCGAATATTATTCAC 60.120 47.826 15.00 0.00 0.00 3.18
483 842 3.435671 CGCCCTTCCGAATATTATTCACC 59.564 47.826 15.00 0.00 0.00 4.02
484 843 4.394729 GCCCTTCCGAATATTATTCACCA 58.605 43.478 15.00 0.00 0.00 4.17
485 844 4.215613 GCCCTTCCGAATATTATTCACCAC 59.784 45.833 15.00 0.00 0.00 4.16
486 845 4.760204 CCCTTCCGAATATTATTCACCACC 59.240 45.833 15.00 0.00 0.00 4.61
487 846 5.456186 CCCTTCCGAATATTATTCACCACCT 60.456 44.000 15.00 0.00 0.00 4.00
488 847 5.470098 CCTTCCGAATATTATTCACCACCTG 59.530 44.000 15.00 0.00 0.00 4.00
489 848 5.623956 TCCGAATATTATTCACCACCTGT 57.376 39.130 15.00 0.00 0.00 4.00
490 849 5.996644 TCCGAATATTATTCACCACCTGTT 58.003 37.500 15.00 0.00 0.00 3.16
491 850 6.419791 TCCGAATATTATTCACCACCTGTTT 58.580 36.000 15.00 0.00 0.00 2.83
492 851 6.317642 TCCGAATATTATTCACCACCTGTTTG 59.682 38.462 15.00 0.00 0.00 2.93
493 852 5.971202 CGAATATTATTCACCACCTGTTTGC 59.029 40.000 15.00 0.00 0.00 3.68
494 853 6.404184 CGAATATTATTCACCACCTGTTTGCA 60.404 38.462 15.00 0.00 0.00 4.08
495 854 6.849085 ATATTATTCACCACCTGTTTGCAA 57.151 33.333 0.00 0.00 0.00 4.08
496 855 5.743636 ATTATTCACCACCTGTTTGCAAT 57.256 34.783 0.00 0.00 0.00 3.56
497 856 3.665745 ATTCACCACCTGTTTGCAATC 57.334 42.857 0.00 0.00 0.00 2.67
498 857 0.950836 TCACCACCTGTTTGCAATCG 59.049 50.000 0.00 0.00 0.00 3.34
499 858 0.667993 CACCACCTGTTTGCAATCGT 59.332 50.000 0.00 0.00 0.00 3.73
500 859 1.876799 CACCACCTGTTTGCAATCGTA 59.123 47.619 0.00 0.00 0.00 3.43
501 860 2.095768 CACCACCTGTTTGCAATCGTAG 60.096 50.000 0.00 0.00 0.00 3.51
502 861 1.468520 CCACCTGTTTGCAATCGTAGG 59.531 52.381 0.00 8.48 0.00 3.18
503 862 2.422597 CACCTGTTTGCAATCGTAGGA 58.577 47.619 19.43 0.00 0.00 2.94
504 863 2.811431 CACCTGTTTGCAATCGTAGGAA 59.189 45.455 19.43 0.00 0.00 3.36
505 864 3.252215 CACCTGTTTGCAATCGTAGGAAA 59.748 43.478 19.43 0.00 0.00 3.13
506 865 3.252458 ACCTGTTTGCAATCGTAGGAAAC 59.748 43.478 19.43 12.00 44.40 2.78
507 866 3.502211 CCTGTTTGCAATCGTAGGAAACT 59.498 43.478 0.00 0.00 44.43 2.66
508 867 4.466828 CTGTTTGCAATCGTAGGAAACTG 58.533 43.478 0.00 13.96 44.43 3.16
509 868 3.880490 TGTTTGCAATCGTAGGAAACTGT 59.120 39.130 0.00 0.00 44.43 3.55
510 869 4.219033 GTTTGCAATCGTAGGAAACTGTG 58.781 43.478 0.00 0.00 41.98 3.66
511 870 3.394674 TGCAATCGTAGGAAACTGTGA 57.605 42.857 0.00 0.00 43.88 3.58
512 871 3.325870 TGCAATCGTAGGAAACTGTGAG 58.674 45.455 0.00 0.00 43.88 3.51
513 872 3.006430 TGCAATCGTAGGAAACTGTGAGA 59.994 43.478 0.00 0.00 43.88 3.27
514 873 4.184629 GCAATCGTAGGAAACTGTGAGAT 58.815 43.478 0.00 0.00 43.88 2.75
515 874 4.631813 GCAATCGTAGGAAACTGTGAGATT 59.368 41.667 0.00 0.00 43.88 2.40
516 875 5.122396 GCAATCGTAGGAAACTGTGAGATTT 59.878 40.000 0.00 0.00 43.88 2.17
517 876 6.348540 GCAATCGTAGGAAACTGTGAGATTTT 60.349 38.462 0.00 0.00 43.88 1.82
518 877 6.727824 ATCGTAGGAAACTGTGAGATTTTG 57.272 37.500 0.00 0.00 43.88 2.44
519 878 4.994852 TCGTAGGAAACTGTGAGATTTTGG 59.005 41.667 0.00 0.00 43.88 3.28
520 879 4.994852 CGTAGGAAACTGTGAGATTTTGGA 59.005 41.667 0.00 0.00 43.88 3.53
521 880 5.468746 CGTAGGAAACTGTGAGATTTTGGAA 59.531 40.000 0.00 0.00 43.88 3.53
522 881 6.347725 CGTAGGAAACTGTGAGATTTTGGAAG 60.348 42.308 0.00 0.00 43.88 3.46
523 882 4.279420 AGGAAACTGTGAGATTTTGGAAGC 59.721 41.667 0.00 0.00 41.13 3.86
524 883 4.037923 GGAAACTGTGAGATTTTGGAAGCA 59.962 41.667 0.00 0.00 0.00 3.91
525 884 5.279156 GGAAACTGTGAGATTTTGGAAGCAT 60.279 40.000 0.00 0.00 0.00 3.79
526 885 5.382618 AACTGTGAGATTTTGGAAGCATC 57.617 39.130 0.00 0.00 0.00 3.91
527 886 4.401022 ACTGTGAGATTTTGGAAGCATCA 58.599 39.130 0.00 0.00 0.00 3.07
528 887 4.828939 ACTGTGAGATTTTGGAAGCATCAA 59.171 37.500 0.00 0.00 0.00 2.57
529 888 5.302568 ACTGTGAGATTTTGGAAGCATCAAA 59.697 36.000 0.00 0.00 32.96 2.69
530 889 6.014840 ACTGTGAGATTTTGGAAGCATCAAAT 60.015 34.615 0.00 0.00 34.58 2.32
531 890 6.392354 TGTGAGATTTTGGAAGCATCAAATC 58.608 36.000 6.62 6.62 34.58 2.17
532 891 5.514204 GTGAGATTTTGGAAGCATCAAATCG 59.486 40.000 8.31 0.00 34.58 3.34
533 892 5.183713 TGAGATTTTGGAAGCATCAAATCGT 59.816 36.000 8.31 0.70 34.58 3.73
534 893 5.644644 AGATTTTGGAAGCATCAAATCGTC 58.355 37.500 8.31 4.98 34.58 4.20
535 894 3.848272 TTTGGAAGCATCAAATCGTCC 57.152 42.857 0.00 0.00 0.00 4.79
536 895 1.750193 TGGAAGCATCAAATCGTCCC 58.250 50.000 0.00 0.00 31.20 4.46
537 896 1.025041 GGAAGCATCAAATCGTCCCC 58.975 55.000 0.00 0.00 0.00 4.81
538 897 0.657840 GAAGCATCAAATCGTCCCCG 59.342 55.000 0.00 0.00 0.00 5.73
563 922 4.408821 AGCGCCATTGCTTCCCGA 62.409 61.111 2.29 0.00 44.46 5.14
564 923 4.179579 GCGCCATTGCTTCCCGAC 62.180 66.667 0.00 0.00 34.43 4.79
565 924 2.745884 CGCCATTGCTTCCCGACA 60.746 61.111 0.00 0.00 34.43 4.35
566 925 2.331893 CGCCATTGCTTCCCGACAA 61.332 57.895 0.00 0.00 34.43 3.18
567 926 1.508088 GCCATTGCTTCCCGACAAG 59.492 57.895 0.00 0.00 33.53 3.16
572 931 4.002797 GCTTCCCGACAAGCCATT 57.997 55.556 6.97 0.00 42.68 3.16
573 932 1.508088 GCTTCCCGACAAGCCATTG 59.492 57.895 6.97 0.00 42.68 2.82
581 940 1.962144 ACAAGCCATTGTCTGCAGC 59.038 52.632 9.47 4.92 46.90 5.25
582 941 1.154093 CAAGCCATTGTCTGCAGCG 60.154 57.895 9.47 0.00 0.00 5.18
583 942 1.601759 AAGCCATTGTCTGCAGCGT 60.602 52.632 9.47 0.00 0.00 5.07
584 943 1.174712 AAGCCATTGTCTGCAGCGTT 61.175 50.000 9.47 0.00 0.00 4.84
585 944 1.443194 GCCATTGTCTGCAGCGTTG 60.443 57.895 9.47 3.90 0.00 4.10
595 954 3.489731 CAGCGTTGCATGATCGGT 58.510 55.556 0.00 0.00 35.75 4.69
596 955 1.061411 CAGCGTTGCATGATCGGTG 59.939 57.895 17.04 17.04 44.05 4.94
597 956 1.079197 AGCGTTGCATGATCGGTGA 60.079 52.632 0.00 0.00 34.16 4.02
598 957 1.060937 GCGTTGCATGATCGGTGAC 59.939 57.895 0.00 0.00 0.00 3.67
610 969 2.668550 GGTGACGCCCTCAACCAC 60.669 66.667 0.00 0.00 29.00 4.16
611 970 2.668550 GTGACGCCCTCAACCACC 60.669 66.667 0.00 0.00 0.00 4.61
612 971 3.164977 TGACGCCCTCAACCACCA 61.165 61.111 0.00 0.00 0.00 4.17
613 972 2.112297 GACGCCCTCAACCACCAA 59.888 61.111 0.00 0.00 0.00 3.67
614 973 1.966451 GACGCCCTCAACCACCAAG 60.966 63.158 0.00 0.00 0.00 3.61
615 974 3.365265 CGCCCTCAACCACCAAGC 61.365 66.667 0.00 0.00 0.00 4.01
616 975 2.203480 GCCCTCAACCACCAAGCA 60.203 61.111 0.00 0.00 0.00 3.91
617 976 1.607467 GCCCTCAACCACCAAGCAT 60.607 57.895 0.00 0.00 0.00 3.79
618 977 1.880819 GCCCTCAACCACCAAGCATG 61.881 60.000 0.00 0.00 0.00 4.06
619 978 0.251297 CCCTCAACCACCAAGCATGA 60.251 55.000 0.00 0.00 0.00 3.07
620 979 1.171308 CCTCAACCACCAAGCATGAG 58.829 55.000 0.00 0.00 37.77 2.90
621 980 0.524862 CTCAACCACCAAGCATGAGC 59.475 55.000 0.00 0.00 42.56 4.26
634 993 3.117491 GCATGAGCTGCCTAAGTATGA 57.883 47.619 0.00 0.00 45.66 2.15
635 994 3.470709 GCATGAGCTGCCTAAGTATGAA 58.529 45.455 0.00 0.00 45.66 2.57
636 995 4.070716 GCATGAGCTGCCTAAGTATGAAT 58.929 43.478 0.00 0.00 45.66 2.57
637 996 4.083431 GCATGAGCTGCCTAAGTATGAATG 60.083 45.833 0.00 0.00 45.66 2.67
638 997 5.303165 CATGAGCTGCCTAAGTATGAATGA 58.697 41.667 0.00 0.00 0.00 2.57
639 998 4.953667 TGAGCTGCCTAAGTATGAATGAG 58.046 43.478 0.00 0.00 0.00 2.90
640 999 4.651045 TGAGCTGCCTAAGTATGAATGAGA 59.349 41.667 0.00 0.00 0.00 3.27
641 1000 5.212532 AGCTGCCTAAGTATGAATGAGAG 57.787 43.478 0.00 0.00 0.00 3.20
642 1001 4.653341 AGCTGCCTAAGTATGAATGAGAGT 59.347 41.667 0.00 0.00 0.00 3.24
643 1002 5.835819 AGCTGCCTAAGTATGAATGAGAGTA 59.164 40.000 0.00 0.00 0.00 2.59
644 1003 6.015519 AGCTGCCTAAGTATGAATGAGAGTAG 60.016 42.308 0.00 0.00 0.00 2.57
645 1004 6.656632 TGCCTAAGTATGAATGAGAGTAGG 57.343 41.667 0.00 0.00 0.00 3.18
646 1005 6.373759 TGCCTAAGTATGAATGAGAGTAGGA 58.626 40.000 0.00 0.00 30.44 2.94
647 1006 6.265649 TGCCTAAGTATGAATGAGAGTAGGAC 59.734 42.308 0.00 0.00 30.44 3.85
648 1007 6.265649 GCCTAAGTATGAATGAGAGTAGGACA 59.734 42.308 0.00 0.00 30.44 4.02
649 1008 7.653647 CCTAAGTATGAATGAGAGTAGGACAC 58.346 42.308 0.00 0.00 30.44 3.67
650 1009 5.759506 AGTATGAATGAGAGTAGGACACG 57.240 43.478 0.00 0.00 0.00 4.49
651 1010 2.941453 TGAATGAGAGTAGGACACGC 57.059 50.000 0.00 0.00 0.00 5.34
652 1011 2.167662 TGAATGAGAGTAGGACACGCA 58.832 47.619 0.00 0.00 0.00 5.24
653 1012 2.560981 TGAATGAGAGTAGGACACGCAA 59.439 45.455 0.00 0.00 0.00 4.85
654 1013 3.195610 TGAATGAGAGTAGGACACGCAAT 59.804 43.478 0.00 0.00 0.00 3.56
655 1014 2.941453 TGAGAGTAGGACACGCAATC 57.059 50.000 0.00 0.00 0.00 2.67
656 1015 1.476891 TGAGAGTAGGACACGCAATCC 59.523 52.381 0.00 0.00 36.38 3.01
657 1016 0.824759 AGAGTAGGACACGCAATCCC 59.175 55.000 0.00 0.00 36.86 3.85
658 1017 0.527817 GAGTAGGACACGCAATCCCG 60.528 60.000 0.00 0.00 36.86 5.14
659 1018 1.217244 GTAGGACACGCAATCCCGT 59.783 57.895 0.00 0.00 43.11 5.28
660 1019 0.457035 GTAGGACACGCAATCCCGTA 59.543 55.000 0.00 0.00 39.83 4.02
661 1020 1.135024 GTAGGACACGCAATCCCGTAA 60.135 52.381 0.00 0.00 39.83 3.18
662 1021 0.390735 AGGACACGCAATCCCGTAAC 60.391 55.000 0.00 0.00 39.83 2.50
663 1022 1.363885 GGACACGCAATCCCGTAACC 61.364 60.000 0.00 0.00 39.83 2.85
664 1023 1.689352 GACACGCAATCCCGTAACCG 61.689 60.000 0.00 0.00 39.83 4.44
665 1024 1.738830 CACGCAATCCCGTAACCGT 60.739 57.895 0.00 0.00 39.83 4.83
666 1025 1.446618 ACGCAATCCCGTAACCGTC 60.447 57.895 0.00 0.00 40.08 4.79
667 1026 2.510594 CGCAATCCCGTAACCGTCG 61.511 63.158 0.00 0.00 0.00 5.12
668 1027 1.446618 GCAATCCCGTAACCGTCGT 60.447 57.895 0.00 0.00 0.00 4.34
669 1028 1.416050 GCAATCCCGTAACCGTCGTC 61.416 60.000 0.00 0.00 0.00 4.20
670 1029 0.803380 CAATCCCGTAACCGTCGTCC 60.803 60.000 0.00 0.00 0.00 4.79
671 1030 2.270297 AATCCCGTAACCGTCGTCCG 62.270 60.000 0.00 0.00 0.00 4.79
672 1031 3.737172 CCCGTAACCGTCGTCCGT 61.737 66.667 0.00 0.00 33.66 4.69
673 1032 2.395360 CCCGTAACCGTCGTCCGTA 61.395 63.158 0.00 0.00 33.66 4.02
674 1033 1.060937 CCGTAACCGTCGTCCGTAG 59.939 63.158 0.00 0.00 33.66 3.51
696 1055 3.814005 GGAAATCCCGTAAGTCTAGCA 57.186 47.619 0.00 0.00 0.00 3.49
697 1056 4.338379 GGAAATCCCGTAAGTCTAGCAT 57.662 45.455 0.00 0.00 0.00 3.79
698 1057 4.704965 GGAAATCCCGTAAGTCTAGCATT 58.295 43.478 0.00 0.00 0.00 3.56
699 1058 5.123936 GGAAATCCCGTAAGTCTAGCATTT 58.876 41.667 0.00 0.00 0.00 2.32
700 1059 5.589050 GGAAATCCCGTAAGTCTAGCATTTT 59.411 40.000 0.00 0.00 0.00 1.82
701 1060 6.095021 GGAAATCCCGTAAGTCTAGCATTTTT 59.905 38.462 0.00 0.00 0.00 1.94
702 1061 6.436843 AATCCCGTAAGTCTAGCATTTTTG 57.563 37.500 0.00 0.00 0.00 2.44
703 1062 4.258543 TCCCGTAAGTCTAGCATTTTTGG 58.741 43.478 0.00 0.00 0.00 3.28
704 1063 3.181500 CCCGTAAGTCTAGCATTTTTGGC 60.181 47.826 0.00 0.00 0.00 4.52
705 1064 3.181500 CCGTAAGTCTAGCATTTTTGGCC 60.181 47.826 0.00 0.00 0.00 5.36
706 1065 3.181500 CGTAAGTCTAGCATTTTTGGCCC 60.181 47.826 0.00 0.00 0.00 5.80
707 1066 1.852633 AGTCTAGCATTTTTGGCCCC 58.147 50.000 0.00 0.00 0.00 5.80
708 1067 1.077005 AGTCTAGCATTTTTGGCCCCA 59.923 47.619 0.00 0.00 0.00 4.96
709 1068 1.478105 GTCTAGCATTTTTGGCCCCAG 59.522 52.381 0.00 0.00 0.00 4.45
710 1069 1.077005 TCTAGCATTTTTGGCCCCAGT 59.923 47.619 0.00 0.00 0.00 4.00
711 1070 2.310349 TCTAGCATTTTTGGCCCCAGTA 59.690 45.455 0.00 0.00 0.00 2.74
712 1071 2.252535 AGCATTTTTGGCCCCAGTAT 57.747 45.000 0.00 0.00 0.00 2.12
713 1072 1.832998 AGCATTTTTGGCCCCAGTATG 59.167 47.619 0.00 0.00 0.00 2.39
714 1073 1.554617 GCATTTTTGGCCCCAGTATGT 59.445 47.619 0.00 0.00 0.00 2.29
717 1076 4.740334 GCATTTTTGGCCCCAGTATGTATG 60.740 45.833 0.00 0.00 0.00 2.39
731 1090 7.712639 CCCAGTATGTATGTATAATCAGATGGC 59.287 40.741 0.00 0.00 0.00 4.40
733 1092 7.436376 CAGTATGTATGTATAATCAGATGGCCG 59.564 40.741 0.00 0.00 0.00 6.13
748 1107 4.343814 AGATGGCCGAAAGAAAAGGAAAAA 59.656 37.500 0.00 0.00 0.00 1.94
750 1109 3.195825 TGGCCGAAAGAAAAGGAAAAACA 59.804 39.130 0.00 0.00 0.00 2.83
753 1112 4.116961 CCGAAAGAAAAGGAAAAACACCC 58.883 43.478 0.00 0.00 0.00 4.61
755 1114 3.812156 AAGAAAAGGAAAAACACCCGG 57.188 42.857 0.00 0.00 0.00 5.73
756 1115 1.411246 AGAAAAGGAAAAACACCCGGC 59.589 47.619 0.00 0.00 0.00 6.13
757 1116 0.466543 AAAAGGAAAAACACCCGGCC 59.533 50.000 0.00 0.00 0.00 6.13
758 1117 1.404479 AAAGGAAAAACACCCGGCCC 61.404 55.000 0.00 0.00 0.00 5.80
759 1118 2.203582 GGAAAAACACCCGGCCCT 60.204 61.111 0.00 0.00 0.00 5.19
760 1119 1.075305 GGAAAAACACCCGGCCCTA 59.925 57.895 0.00 0.00 0.00 3.53
761 1120 1.246056 GGAAAAACACCCGGCCCTAC 61.246 60.000 0.00 0.00 0.00 3.18
762 1121 0.537828 GAAAAACACCCGGCCCTACA 60.538 55.000 0.00 0.00 0.00 2.74
763 1122 0.538746 AAAAACACCCGGCCCTACAG 60.539 55.000 0.00 0.00 0.00 2.74
764 1123 2.420466 AAAACACCCGGCCCTACAGG 62.420 60.000 0.00 0.00 39.47 4.00
774 1133 2.691663 CCCTACAGGCCTACAACCA 58.308 57.895 3.98 0.00 0.00 3.67
827 1187 2.726241 GACATTTTGTTTTCCTGCGAGC 59.274 45.455 0.00 0.00 0.00 5.03
832 1194 1.285950 GTTTTCCTGCGAGCAACCC 59.714 57.895 0.00 0.00 0.00 4.11
845 1207 0.539438 GCAACCCCATCCTTGTGACA 60.539 55.000 0.00 0.00 0.00 3.58
878 1240 5.456763 CGATTCCCTTCCTTCCAATCCTTAT 60.457 44.000 0.00 0.00 0.00 1.73
1142 1504 0.679505 TTCGAGGACTTCACCACCAG 59.320 55.000 0.00 0.00 0.00 4.00
1197 1559 2.896801 CTTTCGGCTGCACGCAACT 61.897 57.895 0.50 0.00 41.67 3.16
1199 1561 1.160946 TTTCGGCTGCACGCAACTAA 61.161 50.000 0.50 0.00 41.67 2.24
1212 1580 2.457970 GCAACTAATCTCGGGTCGTAC 58.542 52.381 0.00 0.00 0.00 3.67
1266 1642 0.601311 GCGCCATGGGTCTAGATGAC 60.601 60.000 15.13 0.00 44.63 3.06
1311 1690 0.960364 TGCATCTTTCCGGCCTGAAC 60.960 55.000 9.39 0.00 0.00 3.18
1318 1697 0.181587 TTCCGGCCTGAACTTGAACA 59.818 50.000 5.36 0.00 0.00 3.18
1410 1813 7.819415 TGCAACTACTATATCACCTGCAATATC 59.181 37.037 0.00 0.00 35.75 1.63
1751 2188 3.076621 TGGTATGTTGCTCTTGCTCTTG 58.923 45.455 0.00 0.00 40.48 3.02
1762 2201 4.249513 GCTCTTGGCATCCCCTTC 57.750 61.111 0.00 0.00 41.35 3.46
1835 2304 3.499157 GGTTACAGTTGCGTTTGTATCCA 59.501 43.478 12.73 0.00 38.57 3.41
2008 2477 7.550906 GGTGCTACTACTTCTTCTTTCATGAAT 59.449 37.037 9.40 0.00 0.00 2.57
2297 2891 8.879759 CAGAACCGTATGTCAATACACTATTTT 58.120 33.333 0.00 0.00 38.94 1.82
2340 2934 0.606401 CCCAAGTTGCATGTCCGACT 60.606 55.000 0.00 0.00 0.00 4.18
2345 2939 3.079960 AGTTGCATGTCCGACTATACG 57.920 47.619 0.00 0.00 0.00 3.06
2487 3206 8.779354 AACTCTGTTAAGTGAGGATTAACATC 57.221 34.615 10.66 0.00 46.48 3.06
2585 3304 4.242475 GTTGGCTGCCAAAAATAGGTTAC 58.758 43.478 33.75 15.60 45.73 2.50
2656 3377 2.435372 TGGCAAGTTTTGAGAGGTGT 57.565 45.000 0.00 0.00 0.00 4.16
2672 3393 4.279671 AGAGGTGTGCATAGTGAGTATAGC 59.720 45.833 0.00 0.00 0.00 2.97
2742 4729 9.830975 AAGCCAATTTTTAGTGTCAAAACTAAT 57.169 25.926 0.00 0.00 41.17 1.73
2899 4886 5.748402 TGCTCTTTGGTTCACATCATAGAT 58.252 37.500 0.00 0.00 0.00 1.98
2931 4919 7.624549 TCTCACTAGGCTGATGTTTATTTTCT 58.375 34.615 0.00 0.00 0.00 2.52
2996 4984 6.735556 AGGATTGAATTCCTACAAACCAGAT 58.264 36.000 2.27 0.00 44.50 2.90
3041 5050 7.819900 CCTATAGAAATCCTATCCTTTGGAACG 59.180 40.741 0.00 0.00 38.87 3.95
3091 5100 7.437713 AATGGAAGTATCTCTTGTATCACCA 57.562 36.000 0.00 0.00 36.40 4.17
3093 5102 5.163550 TGGAAGTATCTCTTGTATCACCACG 60.164 44.000 0.00 0.00 36.40 4.94
3182 5193 2.030363 TGTTCTTGCTTACAAATGGCGG 60.030 45.455 0.00 0.00 34.74 6.13
3222 5234 5.171476 TCTAGAGCAATACTGAAGCACAAC 58.829 41.667 0.00 0.00 0.00 3.32
3236 5248 0.442310 CACAACGCAACTATCCCACG 59.558 55.000 0.00 0.00 0.00 4.94
3237 5249 0.319083 ACAACGCAACTATCCCACGA 59.681 50.000 0.00 0.00 0.00 4.35
3263 5275 4.103365 ACGTGAAACTGAAACAATTGCA 57.897 36.364 5.05 0.00 31.75 4.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 44 2.572284 GGTGGCTCTACGCGAAGT 59.428 61.111 15.93 0.00 40.44 3.01
49 51 2.273538 TCGAGATAGGGTGGCTCTAC 57.726 55.000 0.00 0.00 0.00 2.59
61 63 3.057806 TGACTTGCACTTCGTTCGAGATA 60.058 43.478 0.00 0.00 0.00 1.98
62 64 2.288213 TGACTTGCACTTCGTTCGAGAT 60.288 45.455 0.00 0.00 0.00 2.75
105 107 0.875728 TGCAACCCGGTTTAACATCG 59.124 50.000 0.00 0.00 0.00 3.84
112 114 1.112315 TCTTGCATGCAACCCGGTTT 61.112 50.000 28.80 0.00 0.00 3.27
134 136 1.915614 CTGACAACACCAGCGCATCC 61.916 60.000 11.47 0.00 0.00 3.51
144 146 8.699749 GCAAAAATAAATAAGACCTGACAACAC 58.300 33.333 0.00 0.00 0.00 3.32
242 601 9.237846 GTGTGGATTTTGATAATAAAGCTTAGC 57.762 33.333 0.00 0.00 0.00 3.09
243 602 9.438291 CGTGTGGATTTTGATAATAAAGCTTAG 57.562 33.333 0.00 0.00 0.00 2.18
244 603 9.168451 TCGTGTGGATTTTGATAATAAAGCTTA 57.832 29.630 0.00 0.00 0.00 3.09
245 604 8.050778 TCGTGTGGATTTTGATAATAAAGCTT 57.949 30.769 0.00 0.00 0.00 3.74
246 605 7.201732 CCTCGTGTGGATTTTGATAATAAAGCT 60.202 37.037 0.00 0.00 0.00 3.74
247 606 6.912591 CCTCGTGTGGATTTTGATAATAAAGC 59.087 38.462 0.00 0.00 0.00 3.51
248 607 7.910162 CACCTCGTGTGGATTTTGATAATAAAG 59.090 37.037 0.00 0.00 41.52 1.85
249 608 7.757526 CACCTCGTGTGGATTTTGATAATAAA 58.242 34.615 0.00 0.00 41.52 1.40
250 609 7.315247 CACCTCGTGTGGATTTTGATAATAA 57.685 36.000 0.00 0.00 41.52 1.40
251 610 6.918892 CACCTCGTGTGGATTTTGATAATA 57.081 37.500 0.00 0.00 41.52 0.98
252 611 5.818136 CACCTCGTGTGGATTTTGATAAT 57.182 39.130 0.00 0.00 41.52 1.28
264 623 2.691409 ATGTATTCCCACCTCGTGTG 57.309 50.000 1.59 1.59 45.01 3.82
265 624 2.418197 CGAATGTATTCCCACCTCGTGT 60.418 50.000 0.00 0.00 33.28 4.49
266 625 2.201732 CGAATGTATTCCCACCTCGTG 58.798 52.381 0.00 0.00 33.28 4.35
267 626 1.138266 CCGAATGTATTCCCACCTCGT 59.862 52.381 0.00 0.00 33.28 4.18
268 627 1.411246 TCCGAATGTATTCCCACCTCG 59.589 52.381 0.00 0.00 33.28 4.63
269 628 3.071023 TGATCCGAATGTATTCCCACCTC 59.929 47.826 0.00 0.00 33.28 3.85
270 629 3.045634 TGATCCGAATGTATTCCCACCT 58.954 45.455 0.00 0.00 33.28 4.00
271 630 3.485463 TGATCCGAATGTATTCCCACC 57.515 47.619 0.00 0.00 33.28 4.61
272 631 3.189287 GCATGATCCGAATGTATTCCCAC 59.811 47.826 0.00 0.00 33.28 4.61
273 632 3.411446 GCATGATCCGAATGTATTCCCA 58.589 45.455 0.00 0.00 33.28 4.37
274 633 2.416547 CGCATGATCCGAATGTATTCCC 59.583 50.000 0.00 0.00 33.28 3.97
275 634 2.416547 CCGCATGATCCGAATGTATTCC 59.583 50.000 0.00 0.00 33.28 3.01
276 635 2.416547 CCCGCATGATCCGAATGTATTC 59.583 50.000 0.00 0.00 0.00 1.75
277 636 2.426522 CCCGCATGATCCGAATGTATT 58.573 47.619 0.00 0.00 0.00 1.89
278 637 1.339055 CCCCGCATGATCCGAATGTAT 60.339 52.381 0.00 0.00 0.00 2.29
279 638 0.034756 CCCCGCATGATCCGAATGTA 59.965 55.000 0.00 0.00 0.00 2.29
280 639 1.227943 CCCCGCATGATCCGAATGT 60.228 57.895 0.00 0.00 0.00 2.71
281 640 0.034756 TACCCCGCATGATCCGAATG 59.965 55.000 0.00 0.00 0.00 2.67
282 641 0.321671 CTACCCCGCATGATCCGAAT 59.678 55.000 0.00 0.00 0.00 3.34
283 642 1.745890 CTACCCCGCATGATCCGAA 59.254 57.895 0.00 0.00 0.00 4.30
284 643 2.867855 GCTACCCCGCATGATCCGA 61.868 63.158 0.00 0.00 0.00 4.55
285 644 2.357517 GCTACCCCGCATGATCCG 60.358 66.667 0.00 0.00 0.00 4.18
286 645 2.032681 GGCTACCCCGCATGATCC 59.967 66.667 0.00 0.00 0.00 3.36
287 646 1.302033 CTGGCTACCCCGCATGATC 60.302 63.158 0.00 0.00 35.87 2.92
288 647 2.831770 CTGGCTACCCCGCATGAT 59.168 61.111 0.00 0.00 35.87 2.45
289 648 4.175337 GCTGGCTACCCCGCATGA 62.175 66.667 0.00 0.00 35.87 3.07
294 653 4.162690 GTCTGGCTGGCTACCCCG 62.163 72.222 2.00 0.00 35.87 5.73
295 654 4.162690 CGTCTGGCTGGCTACCCC 62.163 72.222 2.00 0.00 0.00 4.95
296 655 3.372554 GACGTCTGGCTGGCTACCC 62.373 68.421 8.70 0.00 0.00 3.69
297 656 2.184579 GACGTCTGGCTGGCTACC 59.815 66.667 8.70 0.00 0.00 3.18
298 657 2.202623 CGACGTCTGGCTGGCTAC 60.203 66.667 14.70 0.04 0.00 3.58
299 658 4.129737 GCGACGTCTGGCTGGCTA 62.130 66.667 14.70 0.00 0.00 3.93
310 669 4.039357 CAGTCCAGGACGCGACGT 62.039 66.667 15.93 5.22 45.10 4.34
311 670 3.669036 CTCAGTCCAGGACGCGACG 62.669 68.421 15.93 5.75 37.67 5.12
312 671 2.179517 CTCAGTCCAGGACGCGAC 59.820 66.667 15.93 6.56 37.67 5.19
313 672 2.033602 TCTCAGTCCAGGACGCGA 59.966 61.111 15.93 13.39 37.67 5.87
314 673 1.025113 TAGTCTCAGTCCAGGACGCG 61.025 60.000 14.32 3.53 37.67 6.01
315 674 1.066303 CATAGTCTCAGTCCAGGACGC 59.934 57.143 14.32 3.83 37.67 5.19
316 675 2.644676 TCATAGTCTCAGTCCAGGACG 58.355 52.381 14.32 9.30 37.67 4.79
317 676 5.407407 TTTTCATAGTCTCAGTCCAGGAC 57.593 43.478 12.25 12.25 0.00 3.85
318 677 5.627735 GCATTTTCATAGTCTCAGTCCAGGA 60.628 44.000 0.00 0.00 0.00 3.86
319 678 4.574013 GCATTTTCATAGTCTCAGTCCAGG 59.426 45.833 0.00 0.00 0.00 4.45
320 679 5.426504 AGCATTTTCATAGTCTCAGTCCAG 58.573 41.667 0.00 0.00 0.00 3.86
321 680 5.426689 AGCATTTTCATAGTCTCAGTCCA 57.573 39.130 0.00 0.00 0.00 4.02
322 681 6.018343 GCTAAGCATTTTCATAGTCTCAGTCC 60.018 42.308 0.00 0.00 0.00 3.85
323 682 6.760770 AGCTAAGCATTTTCATAGTCTCAGTC 59.239 38.462 0.00 0.00 0.00 3.51
324 683 6.648192 AGCTAAGCATTTTCATAGTCTCAGT 58.352 36.000 0.00 0.00 0.00 3.41
325 684 8.654230 TTAGCTAAGCATTTTCATAGTCTCAG 57.346 34.615 0.86 0.00 0.00 3.35
326 685 8.883731 GTTTAGCTAAGCATTTTCATAGTCTCA 58.116 33.333 14.73 0.00 0.00 3.27
327 686 9.103861 AGTTTAGCTAAGCATTTTCATAGTCTC 57.896 33.333 20.66 0.00 0.00 3.36
332 691 9.066892 CCCATAGTTTAGCTAAGCATTTTCATA 57.933 33.333 20.66 4.72 32.72 2.15
333 692 7.470563 GCCCATAGTTTAGCTAAGCATTTTCAT 60.471 37.037 20.66 2.71 32.72 2.57
334 693 6.183360 GCCCATAGTTTAGCTAAGCATTTTCA 60.183 38.462 20.66 0.00 32.72 2.69
335 694 6.209361 GCCCATAGTTTAGCTAAGCATTTTC 58.791 40.000 20.66 3.63 32.72 2.29
336 695 5.069119 GGCCCATAGTTTAGCTAAGCATTTT 59.931 40.000 20.66 4.37 32.72 1.82
337 696 4.584743 GGCCCATAGTTTAGCTAAGCATTT 59.415 41.667 20.66 4.70 32.72 2.32
338 697 4.141158 AGGCCCATAGTTTAGCTAAGCATT 60.141 41.667 20.66 6.22 32.72 3.56
339 698 3.395941 AGGCCCATAGTTTAGCTAAGCAT 59.604 43.478 20.66 7.86 32.72 3.79
340 699 2.777692 AGGCCCATAGTTTAGCTAAGCA 59.222 45.455 20.66 8.58 32.72 3.91
341 700 3.181454 TGAGGCCCATAGTTTAGCTAAGC 60.181 47.826 12.03 12.03 32.72 3.09
342 701 4.381411 GTGAGGCCCATAGTTTAGCTAAG 58.619 47.826 6.24 0.00 32.72 2.18
343 702 3.181469 CGTGAGGCCCATAGTTTAGCTAA 60.181 47.826 0.86 0.86 32.72 3.09
344 703 2.364324 CGTGAGGCCCATAGTTTAGCTA 59.636 50.000 0.00 0.00 0.00 3.32
345 704 1.139058 CGTGAGGCCCATAGTTTAGCT 59.861 52.381 0.00 0.00 0.00 3.32
346 705 1.583054 CGTGAGGCCCATAGTTTAGC 58.417 55.000 0.00 0.00 0.00 3.09
360 719 1.429463 GCTGGACTGTTAACCGTGAG 58.571 55.000 7.45 4.73 0.00 3.51
361 720 0.034337 GGCTGGACTGTTAACCGTGA 59.966 55.000 7.45 0.00 0.00 4.35
362 721 0.034896 AGGCTGGACTGTTAACCGTG 59.965 55.000 7.45 0.00 0.00 4.94
363 722 0.763035 AAGGCTGGACTGTTAACCGT 59.237 50.000 1.93 1.93 0.00 4.83
364 723 1.270625 TGAAGGCTGGACTGTTAACCG 60.271 52.381 2.48 0.00 0.00 4.44
365 724 2.561478 TGAAGGCTGGACTGTTAACC 57.439 50.000 2.48 0.00 0.00 2.85
366 725 4.911514 TTTTGAAGGCTGGACTGTTAAC 57.088 40.909 0.00 0.00 0.00 2.01
367 726 5.596361 TCATTTTTGAAGGCTGGACTGTTAA 59.404 36.000 0.00 0.00 0.00 2.01
368 727 5.136828 TCATTTTTGAAGGCTGGACTGTTA 58.863 37.500 0.00 0.00 0.00 2.41
369 728 3.960102 TCATTTTTGAAGGCTGGACTGTT 59.040 39.130 0.00 0.00 0.00 3.16
370 729 3.565307 TCATTTTTGAAGGCTGGACTGT 58.435 40.909 0.00 0.00 0.00 3.55
371 730 4.589216 TTCATTTTTGAAGGCTGGACTG 57.411 40.909 0.00 0.00 0.00 3.51
372 731 5.813513 ATTTCATTTTTGAAGGCTGGACT 57.186 34.783 0.00 0.00 0.00 3.85
373 732 6.928492 TGTAATTTCATTTTTGAAGGCTGGAC 59.072 34.615 0.00 0.00 0.00 4.02
374 733 7.060383 TGTAATTTCATTTTTGAAGGCTGGA 57.940 32.000 0.00 0.00 0.00 3.86
375 734 7.727331 TTGTAATTTCATTTTTGAAGGCTGG 57.273 32.000 0.00 0.00 0.00 4.85
402 761 9.355916 AGAGATTAACTTGGAGCTTTAAGTTTT 57.644 29.630 24.87 16.83 42.67 2.43
403 762 8.787852 CAGAGATTAACTTGGAGCTTTAAGTTT 58.212 33.333 24.87 14.05 42.67 2.66
404 763 7.939588 ACAGAGATTAACTTGGAGCTTTAAGTT 59.060 33.333 23.83 23.83 45.89 2.66
405 764 7.454225 ACAGAGATTAACTTGGAGCTTTAAGT 58.546 34.615 9.88 9.88 38.70 2.24
406 765 7.913674 ACAGAGATTAACTTGGAGCTTTAAG 57.086 36.000 8.78 8.78 0.00 1.85
407 766 9.959721 ATTACAGAGATTAACTTGGAGCTTTAA 57.040 29.630 0.00 0.00 0.00 1.52
408 767 9.383519 CATTACAGAGATTAACTTGGAGCTTTA 57.616 33.333 0.00 0.00 0.00 1.85
409 768 8.103305 TCATTACAGAGATTAACTTGGAGCTTT 58.897 33.333 0.00 0.00 0.00 3.51
410 769 7.624549 TCATTACAGAGATTAACTTGGAGCTT 58.375 34.615 0.00 0.00 0.00 3.74
411 770 7.187824 TCATTACAGAGATTAACTTGGAGCT 57.812 36.000 0.00 0.00 0.00 4.09
412 771 9.202273 CTATCATTACAGAGATTAACTTGGAGC 57.798 37.037 0.00 0.00 0.00 4.70
415 774 9.482627 GGTCTATCATTACAGAGATTAACTTGG 57.517 37.037 0.00 0.00 0.00 3.61
416 775 9.482627 GGGTCTATCATTACAGAGATTAACTTG 57.517 37.037 0.00 0.00 0.00 3.16
417 776 9.213777 TGGGTCTATCATTACAGAGATTAACTT 57.786 33.333 0.00 0.00 0.00 2.66
418 777 8.783660 TGGGTCTATCATTACAGAGATTAACT 57.216 34.615 0.00 0.00 0.00 2.24
430 789 9.824216 GGGTAGCTATATATGGGTCTATCATTA 57.176 37.037 3.85 0.00 0.00 1.90
431 790 7.735321 GGGGTAGCTATATATGGGTCTATCATT 59.265 40.741 3.85 0.00 0.00 2.57
432 791 7.249715 GGGGTAGCTATATATGGGTCTATCAT 58.750 42.308 3.85 0.00 0.00 2.45
433 792 6.621394 GGGGTAGCTATATATGGGTCTATCA 58.379 44.000 3.85 0.00 0.00 2.15
434 793 5.711036 CGGGGTAGCTATATATGGGTCTATC 59.289 48.000 3.85 0.00 0.00 2.08
435 794 5.459241 CCGGGGTAGCTATATATGGGTCTAT 60.459 48.000 3.85 0.00 0.00 1.98
436 795 4.141088 CCGGGGTAGCTATATATGGGTCTA 60.141 50.000 3.85 0.00 0.00 2.59
437 796 3.373877 CCGGGGTAGCTATATATGGGTCT 60.374 52.174 3.85 0.00 0.00 3.85
438 797 2.963782 CCGGGGTAGCTATATATGGGTC 59.036 54.545 3.85 0.00 0.00 4.46
439 798 2.359994 CCCGGGGTAGCTATATATGGGT 60.360 54.545 14.71 6.05 0.00 4.51
440 799 2.326428 CCCGGGGTAGCTATATATGGG 58.674 57.143 14.71 1.63 0.00 4.00
441 800 1.692519 GCCCGGGGTAGCTATATATGG 59.307 57.143 25.28 0.00 0.00 2.74
442 801 1.340248 CGCCCGGGGTAGCTATATATG 59.660 57.143 25.28 0.00 0.00 1.78
443 802 1.700955 CGCCCGGGGTAGCTATATAT 58.299 55.000 25.28 0.00 0.00 0.86
444 803 1.039233 GCGCCCGGGGTAGCTATATA 61.039 60.000 25.28 0.00 0.00 0.86
445 804 2.356780 GCGCCCGGGGTAGCTATAT 61.357 63.158 25.28 0.00 0.00 0.86
446 805 2.993264 GCGCCCGGGGTAGCTATA 60.993 66.667 25.28 0.00 0.00 1.31
457 816 3.530910 ATATTCGGAAGGGCGCCCG 62.531 63.158 38.88 26.81 46.57 6.13
458 817 0.035739 TAATATTCGGAAGGGCGCCC 59.964 55.000 39.29 39.29 0.00 6.13
459 818 2.109425 ATAATATTCGGAAGGGCGCC 57.891 50.000 21.18 21.18 0.00 6.53
460 819 3.071479 TGAATAATATTCGGAAGGGCGC 58.929 45.455 0.00 0.00 0.00 6.53
461 820 3.435671 GGTGAATAATATTCGGAAGGGCG 59.564 47.826 8.30 0.00 0.00 6.13
462 821 4.215613 GTGGTGAATAATATTCGGAAGGGC 59.784 45.833 8.30 0.00 0.00 5.19
463 822 4.760204 GGTGGTGAATAATATTCGGAAGGG 59.240 45.833 8.30 0.00 0.00 3.95
464 823 5.470098 CAGGTGGTGAATAATATTCGGAAGG 59.530 44.000 8.30 0.00 0.00 3.46
465 824 6.055588 ACAGGTGGTGAATAATATTCGGAAG 58.944 40.000 8.30 0.00 0.00 3.46
466 825 5.996644 ACAGGTGGTGAATAATATTCGGAA 58.003 37.500 8.30 0.00 0.00 4.30
467 826 5.623956 ACAGGTGGTGAATAATATTCGGA 57.376 39.130 8.30 0.00 0.00 4.55
468 827 6.494842 CAAACAGGTGGTGAATAATATTCGG 58.505 40.000 8.30 0.00 0.00 4.30
469 828 5.971202 GCAAACAGGTGGTGAATAATATTCG 59.029 40.000 8.30 0.00 0.00 3.34
470 829 6.862209 TGCAAACAGGTGGTGAATAATATTC 58.138 36.000 6.07 6.07 0.00 1.75
471 830 6.849085 TGCAAACAGGTGGTGAATAATATT 57.151 33.333 0.00 0.00 0.00 1.28
472 831 6.849085 TTGCAAACAGGTGGTGAATAATAT 57.151 33.333 0.00 0.00 0.00 1.28
473 832 6.404184 CGATTGCAAACAGGTGGTGAATAATA 60.404 38.462 1.71 0.00 0.00 0.98
474 833 5.622007 CGATTGCAAACAGGTGGTGAATAAT 60.622 40.000 1.71 0.00 0.00 1.28
475 834 4.320861 CGATTGCAAACAGGTGGTGAATAA 60.321 41.667 1.71 0.00 0.00 1.40
476 835 3.190327 CGATTGCAAACAGGTGGTGAATA 59.810 43.478 1.71 0.00 0.00 1.75
477 836 2.030007 CGATTGCAAACAGGTGGTGAAT 60.030 45.455 1.71 0.00 0.00 2.57
478 837 1.336440 CGATTGCAAACAGGTGGTGAA 59.664 47.619 1.71 0.00 0.00 3.18
479 838 0.950836 CGATTGCAAACAGGTGGTGA 59.049 50.000 1.71 0.00 0.00 4.02
480 839 0.667993 ACGATTGCAAACAGGTGGTG 59.332 50.000 1.71 0.00 0.00 4.17
481 840 2.151202 CTACGATTGCAAACAGGTGGT 58.849 47.619 1.71 0.00 0.00 4.16
482 841 1.468520 CCTACGATTGCAAACAGGTGG 59.531 52.381 1.71 1.20 0.00 4.61
483 842 2.422597 TCCTACGATTGCAAACAGGTG 58.577 47.619 1.71 0.00 0.00 4.00
484 843 2.851263 TCCTACGATTGCAAACAGGT 57.149 45.000 1.71 1.66 0.00 4.00
485 844 3.502211 AGTTTCCTACGATTGCAAACAGG 59.498 43.478 1.71 4.92 30.74 4.00
486 845 4.024048 ACAGTTTCCTACGATTGCAAACAG 60.024 41.667 1.71 0.00 30.74 3.16
487 846 3.880490 ACAGTTTCCTACGATTGCAAACA 59.120 39.130 1.71 0.00 30.74 2.83
488 847 4.024387 TCACAGTTTCCTACGATTGCAAAC 60.024 41.667 1.71 0.00 0.00 2.93
489 848 4.130857 TCACAGTTTCCTACGATTGCAAA 58.869 39.130 1.71 0.00 0.00 3.68
490 849 3.734463 TCACAGTTTCCTACGATTGCAA 58.266 40.909 0.00 0.00 0.00 4.08
491 850 3.006430 TCTCACAGTTTCCTACGATTGCA 59.994 43.478 0.00 0.00 0.00 4.08
492 851 3.585862 TCTCACAGTTTCCTACGATTGC 58.414 45.455 0.00 0.00 0.00 3.56
493 852 6.727824 AAATCTCACAGTTTCCTACGATTG 57.272 37.500 0.00 0.00 0.00 2.67
494 853 6.149474 CCAAAATCTCACAGTTTCCTACGATT 59.851 38.462 0.00 0.00 0.00 3.34
495 854 5.643777 CCAAAATCTCACAGTTTCCTACGAT 59.356 40.000 0.00 0.00 0.00 3.73
496 855 4.994852 CCAAAATCTCACAGTTTCCTACGA 59.005 41.667 0.00 0.00 0.00 3.43
497 856 4.994852 TCCAAAATCTCACAGTTTCCTACG 59.005 41.667 0.00 0.00 0.00 3.51
498 857 6.568653 GCTTCCAAAATCTCACAGTTTCCTAC 60.569 42.308 0.00 0.00 0.00 3.18
499 858 5.473504 GCTTCCAAAATCTCACAGTTTCCTA 59.526 40.000 0.00 0.00 0.00 2.94
500 859 4.279420 GCTTCCAAAATCTCACAGTTTCCT 59.721 41.667 0.00 0.00 0.00 3.36
501 860 4.037923 TGCTTCCAAAATCTCACAGTTTCC 59.962 41.667 0.00 0.00 0.00 3.13
502 861 5.186996 TGCTTCCAAAATCTCACAGTTTC 57.813 39.130 0.00 0.00 0.00 2.78
503 862 5.302568 TGATGCTTCCAAAATCTCACAGTTT 59.697 36.000 0.00 0.00 0.00 2.66
504 863 4.828939 TGATGCTTCCAAAATCTCACAGTT 59.171 37.500 0.00 0.00 0.00 3.16
505 864 4.401022 TGATGCTTCCAAAATCTCACAGT 58.599 39.130 0.00 0.00 0.00 3.55
506 865 5.381174 TTGATGCTTCCAAAATCTCACAG 57.619 39.130 0.00 0.00 0.00 3.66
507 866 5.787953 TTTGATGCTTCCAAAATCTCACA 57.212 34.783 0.00 0.00 31.36 3.58
508 867 5.514204 CGATTTGATGCTTCCAAAATCTCAC 59.486 40.000 16.61 1.02 37.11 3.51
509 868 5.183713 ACGATTTGATGCTTCCAAAATCTCA 59.816 36.000 16.61 0.00 37.11 3.27
510 869 5.644644 ACGATTTGATGCTTCCAAAATCTC 58.355 37.500 16.61 6.20 37.11 2.75
511 870 5.393461 GGACGATTTGATGCTTCCAAAATCT 60.393 40.000 16.61 8.82 37.11 2.40
512 871 4.800471 GGACGATTTGATGCTTCCAAAATC 59.200 41.667 12.07 12.07 37.11 2.17
513 872 4.381932 GGGACGATTTGATGCTTCCAAAAT 60.382 41.667 0.00 0.00 37.11 1.82
514 873 3.056891 GGGACGATTTGATGCTTCCAAAA 60.057 43.478 0.00 0.00 37.11 2.44
515 874 2.491693 GGGACGATTTGATGCTTCCAAA 59.508 45.455 0.00 0.00 37.82 3.28
516 875 2.091541 GGGACGATTTGATGCTTCCAA 58.908 47.619 0.00 0.00 0.00 3.53
517 876 1.681780 GGGGACGATTTGATGCTTCCA 60.682 52.381 0.00 0.00 0.00 3.53
518 877 1.025041 GGGGACGATTTGATGCTTCC 58.975 55.000 0.00 0.00 0.00 3.46
549 908 1.508088 CTTGTCGGGAAGCAATGGC 59.492 57.895 0.00 0.00 41.61 4.40
550 909 1.508088 GCTTGTCGGGAAGCAATGG 59.492 57.895 12.70 0.00 46.46 3.16
555 914 1.244019 ACAATGGCTTGTCGGGAAGC 61.244 55.000 9.97 9.97 41.86 3.86
556 915 2.946947 ACAATGGCTTGTCGGGAAG 58.053 52.632 0.00 0.00 41.86 3.46
564 923 1.154093 CGCTGCAGACAATGGCTTG 60.154 57.895 20.43 0.00 38.39 4.01
565 924 1.174712 AACGCTGCAGACAATGGCTT 61.175 50.000 20.43 0.00 0.00 4.35
566 925 1.601759 AACGCTGCAGACAATGGCT 60.602 52.632 20.43 0.00 0.00 4.75
567 926 1.443194 CAACGCTGCAGACAATGGC 60.443 57.895 20.43 0.00 0.00 4.40
568 927 4.853507 CAACGCTGCAGACAATGG 57.146 55.556 20.43 0.76 0.00 3.16
578 937 1.061411 CACCGATCATGCAACGCTG 59.939 57.895 0.00 0.00 0.00 5.18
579 938 1.079197 TCACCGATCATGCAACGCT 60.079 52.632 0.00 0.00 0.00 5.07
580 939 1.060937 GTCACCGATCATGCAACGC 59.939 57.895 0.00 0.00 0.00 4.84
581 940 1.344837 CGTCACCGATCATGCAACG 59.655 57.895 0.00 0.00 35.63 4.10
582 941 1.060937 GCGTCACCGATCATGCAAC 59.939 57.895 0.00 0.00 35.63 4.17
583 942 2.106074 GGCGTCACCGATCATGCAA 61.106 57.895 0.00 0.00 35.63 4.08
584 943 2.511373 GGCGTCACCGATCATGCA 60.511 61.111 0.00 0.00 35.63 3.96
585 944 3.272334 GGGCGTCACCGATCATGC 61.272 66.667 0.00 0.00 40.62 4.06
586 945 1.592669 GAGGGCGTCACCGATCATG 60.593 63.158 1.64 0.00 40.62 3.07
587 946 1.613317 TTGAGGGCGTCACCGATCAT 61.613 55.000 9.78 0.00 40.62 2.45
588 947 2.279810 TTGAGGGCGTCACCGATCA 61.280 57.895 9.78 0.00 40.62 2.92
589 948 1.810030 GTTGAGGGCGTCACCGATC 60.810 63.158 9.78 0.00 40.62 3.69
590 949 2.264794 GTTGAGGGCGTCACCGAT 59.735 61.111 9.78 0.00 40.62 4.18
591 950 3.998672 GGTTGAGGGCGTCACCGA 61.999 66.667 9.78 0.00 40.62 4.69
592 951 4.308458 TGGTTGAGGGCGTCACCG 62.308 66.667 9.78 0.00 40.62 4.94
593 952 2.668550 GTGGTTGAGGGCGTCACC 60.669 66.667 9.78 14.14 33.71 4.02
594 953 2.668550 GGTGGTTGAGGGCGTCAC 60.669 66.667 9.78 5.42 33.71 3.67
595 954 2.674563 CTTGGTGGTTGAGGGCGTCA 62.675 60.000 5.66 5.66 0.00 4.35
596 955 1.966451 CTTGGTGGTTGAGGGCGTC 60.966 63.158 0.00 0.00 0.00 5.19
597 956 2.113139 CTTGGTGGTTGAGGGCGT 59.887 61.111 0.00 0.00 0.00 5.68
598 957 3.365265 GCTTGGTGGTTGAGGGCG 61.365 66.667 0.00 0.00 0.00 6.13
599 958 1.607467 ATGCTTGGTGGTTGAGGGC 60.607 57.895 0.00 0.00 0.00 5.19
600 959 0.251297 TCATGCTTGGTGGTTGAGGG 60.251 55.000 0.00 0.00 0.00 4.30
601 960 1.171308 CTCATGCTTGGTGGTTGAGG 58.829 55.000 0.00 0.00 32.14 3.86
602 961 0.524862 GCTCATGCTTGGTGGTTGAG 59.475 55.000 0.00 0.00 37.47 3.02
603 962 2.644887 GCTCATGCTTGGTGGTTGA 58.355 52.632 0.00 0.00 36.03 3.18
615 974 5.303165 TCATTCATACTTAGGCAGCTCATG 58.697 41.667 0.00 0.00 0.00 3.07
616 975 5.306419 TCTCATTCATACTTAGGCAGCTCAT 59.694 40.000 0.00 0.00 0.00 2.90
617 976 4.651045 TCTCATTCATACTTAGGCAGCTCA 59.349 41.667 0.00 0.00 0.00 4.26
618 977 5.207110 TCTCATTCATACTTAGGCAGCTC 57.793 43.478 0.00 0.00 0.00 4.09
619 978 4.653341 ACTCTCATTCATACTTAGGCAGCT 59.347 41.667 0.00 0.00 0.00 4.24
620 979 4.954875 ACTCTCATTCATACTTAGGCAGC 58.045 43.478 0.00 0.00 0.00 5.25
621 980 6.491745 TCCTACTCTCATTCATACTTAGGCAG 59.508 42.308 0.00 0.00 0.00 4.85
622 981 6.265649 GTCCTACTCTCATTCATACTTAGGCA 59.734 42.308 0.00 0.00 0.00 4.75
623 982 6.265649 TGTCCTACTCTCATTCATACTTAGGC 59.734 42.308 0.00 0.00 0.00 3.93
624 983 7.520776 CGTGTCCTACTCTCATTCATACTTAGG 60.521 44.444 0.00 0.00 0.00 2.69
625 984 7.356540 CGTGTCCTACTCTCATTCATACTTAG 58.643 42.308 0.00 0.00 0.00 2.18
626 985 6.238676 GCGTGTCCTACTCTCATTCATACTTA 60.239 42.308 0.00 0.00 0.00 2.24
627 986 5.450688 GCGTGTCCTACTCTCATTCATACTT 60.451 44.000 0.00 0.00 0.00 2.24
628 987 4.036971 GCGTGTCCTACTCTCATTCATACT 59.963 45.833 0.00 0.00 0.00 2.12
629 988 4.202020 TGCGTGTCCTACTCTCATTCATAC 60.202 45.833 0.00 0.00 0.00 2.39
630 989 3.951680 TGCGTGTCCTACTCTCATTCATA 59.048 43.478 0.00 0.00 0.00 2.15
631 990 2.760650 TGCGTGTCCTACTCTCATTCAT 59.239 45.455 0.00 0.00 0.00 2.57
632 991 2.167662 TGCGTGTCCTACTCTCATTCA 58.832 47.619 0.00 0.00 0.00 2.57
633 992 2.941453 TGCGTGTCCTACTCTCATTC 57.059 50.000 0.00 0.00 0.00 2.67
634 993 3.430929 GGATTGCGTGTCCTACTCTCATT 60.431 47.826 0.00 0.00 32.85 2.57
635 994 2.101582 GGATTGCGTGTCCTACTCTCAT 59.898 50.000 0.00 0.00 32.85 2.90
636 995 1.476891 GGATTGCGTGTCCTACTCTCA 59.523 52.381 0.00 0.00 32.85 3.27
637 996 1.202428 GGGATTGCGTGTCCTACTCTC 60.202 57.143 2.42 0.00 36.00 3.20
638 997 0.824759 GGGATTGCGTGTCCTACTCT 59.175 55.000 2.42 0.00 36.00 3.24
639 998 0.527817 CGGGATTGCGTGTCCTACTC 60.528 60.000 2.42 0.00 36.00 2.59
640 999 1.255667 ACGGGATTGCGTGTCCTACT 61.256 55.000 2.42 0.00 36.00 2.57
641 1000 0.457035 TACGGGATTGCGTGTCCTAC 59.543 55.000 0.00 0.00 36.00 3.18
642 1001 1.135024 GTTACGGGATTGCGTGTCCTA 60.135 52.381 0.00 0.00 36.00 2.94
643 1002 0.390735 GTTACGGGATTGCGTGTCCT 60.391 55.000 0.00 0.00 36.00 3.85
644 1003 1.363885 GGTTACGGGATTGCGTGTCC 61.364 60.000 0.00 0.00 34.92 4.02
645 1004 1.689352 CGGTTACGGGATTGCGTGTC 61.689 60.000 0.00 0.00 36.18 3.67
646 1005 1.738830 CGGTTACGGGATTGCGTGT 60.739 57.895 0.00 0.00 36.18 4.49
647 1006 1.689352 GACGGTTACGGGATTGCGTG 61.689 60.000 0.00 0.00 46.48 5.34
648 1007 1.446618 GACGGTTACGGGATTGCGT 60.447 57.895 0.00 0.00 46.48 5.24
649 1008 2.510594 CGACGGTTACGGGATTGCG 61.511 63.158 0.00 0.00 46.48 4.85
650 1009 1.416050 GACGACGGTTACGGGATTGC 61.416 60.000 0.00 0.00 46.48 3.56
651 1010 0.803380 GGACGACGGTTACGGGATTG 60.803 60.000 0.00 0.00 46.48 2.67
652 1011 1.512694 GGACGACGGTTACGGGATT 59.487 57.895 0.00 0.00 46.48 3.01
653 1012 2.764314 CGGACGACGGTTACGGGAT 61.764 63.158 0.00 0.00 46.48 3.85
654 1013 3.430862 CGGACGACGGTTACGGGA 61.431 66.667 0.00 0.00 46.48 5.14
664 1023 0.103755 GGATTTCCCCTACGGACGAC 59.896 60.000 0.00 0.00 41.83 4.34
665 1024 2.508361 GGATTTCCCCTACGGACGA 58.492 57.895 0.00 0.00 41.83 4.20
676 1035 3.814005 TGCTAGACTTACGGGATTTCC 57.186 47.619 0.00 0.00 0.00 3.13
677 1036 6.679327 AAAATGCTAGACTTACGGGATTTC 57.321 37.500 0.00 0.00 31.79 2.17
678 1037 6.127730 CCAAAAATGCTAGACTTACGGGATTT 60.128 38.462 0.00 0.00 32.73 2.17
679 1038 5.357032 CCAAAAATGCTAGACTTACGGGATT 59.643 40.000 0.00 0.00 0.00 3.01
680 1039 4.881850 CCAAAAATGCTAGACTTACGGGAT 59.118 41.667 0.00 0.00 0.00 3.85
681 1040 4.258543 CCAAAAATGCTAGACTTACGGGA 58.741 43.478 0.00 0.00 0.00 5.14
682 1041 3.181500 GCCAAAAATGCTAGACTTACGGG 60.181 47.826 0.00 0.00 0.00 5.28
683 1042 3.181500 GGCCAAAAATGCTAGACTTACGG 60.181 47.826 0.00 0.00 0.00 4.02
684 1043 3.181500 GGGCCAAAAATGCTAGACTTACG 60.181 47.826 4.39 0.00 0.00 3.18
685 1044 3.130516 GGGGCCAAAAATGCTAGACTTAC 59.869 47.826 4.39 0.00 0.00 2.34
686 1045 3.245443 TGGGGCCAAAAATGCTAGACTTA 60.245 43.478 4.39 0.00 0.00 2.24
687 1046 2.179427 GGGGCCAAAAATGCTAGACTT 58.821 47.619 4.39 0.00 0.00 3.01
688 1047 1.077005 TGGGGCCAAAAATGCTAGACT 59.923 47.619 4.39 0.00 0.00 3.24
689 1048 1.478105 CTGGGGCCAAAAATGCTAGAC 59.522 52.381 4.39 0.00 0.00 2.59
690 1049 1.077005 ACTGGGGCCAAAAATGCTAGA 59.923 47.619 4.39 0.00 0.00 2.43
691 1050 1.560505 ACTGGGGCCAAAAATGCTAG 58.439 50.000 4.39 0.00 0.00 3.42
692 1051 2.909504 TACTGGGGCCAAAAATGCTA 57.090 45.000 4.39 0.00 0.00 3.49
693 1052 1.832998 CATACTGGGGCCAAAAATGCT 59.167 47.619 4.39 0.00 0.00 3.79
694 1053 1.554617 ACATACTGGGGCCAAAAATGC 59.445 47.619 4.39 0.00 0.00 3.56
695 1054 4.405358 ACATACATACTGGGGCCAAAAATG 59.595 41.667 4.39 6.24 0.00 2.32
696 1055 4.619679 ACATACATACTGGGGCCAAAAAT 58.380 39.130 4.39 0.00 0.00 1.82
697 1056 4.054359 ACATACATACTGGGGCCAAAAA 57.946 40.909 4.39 0.00 0.00 1.94
698 1057 3.748645 ACATACATACTGGGGCCAAAA 57.251 42.857 4.39 0.00 0.00 2.44
699 1058 6.517013 TTATACATACATACTGGGGCCAAA 57.483 37.500 4.39 0.00 0.00 3.28
700 1059 6.273495 TGATTATACATACATACTGGGGCCAA 59.727 38.462 4.39 0.00 0.00 4.52
701 1060 5.788014 TGATTATACATACATACTGGGGCCA 59.212 40.000 4.39 0.00 0.00 5.36
702 1061 6.156256 TCTGATTATACATACATACTGGGGCC 59.844 42.308 0.00 0.00 0.00 5.80
703 1062 7.182817 TCTGATTATACATACATACTGGGGC 57.817 40.000 0.00 0.00 0.00 5.80
704 1063 8.206867 CCATCTGATTATACATACATACTGGGG 58.793 40.741 0.00 0.00 0.00 4.96
705 1064 7.712639 GCCATCTGATTATACATACATACTGGG 59.287 40.741 0.00 0.00 0.00 4.45
706 1065 7.712639 GGCCATCTGATTATACATACATACTGG 59.287 40.741 0.00 0.00 0.00 4.00
707 1066 7.436376 CGGCCATCTGATTATACATACATACTG 59.564 40.741 2.24 0.00 0.00 2.74
708 1067 7.342026 TCGGCCATCTGATTATACATACATACT 59.658 37.037 2.24 0.00 0.00 2.12
709 1068 7.489160 TCGGCCATCTGATTATACATACATAC 58.511 38.462 2.24 0.00 0.00 2.39
710 1069 7.654022 TCGGCCATCTGATTATACATACATA 57.346 36.000 2.24 0.00 0.00 2.29
711 1070 6.544928 TCGGCCATCTGATTATACATACAT 57.455 37.500 2.24 0.00 0.00 2.29
712 1071 5.993748 TCGGCCATCTGATTATACATACA 57.006 39.130 2.24 0.00 0.00 2.29
713 1072 7.097192 TCTTTCGGCCATCTGATTATACATAC 58.903 38.462 2.24 0.00 0.00 2.39
714 1073 7.239763 TCTTTCGGCCATCTGATTATACATA 57.760 36.000 2.24 0.00 0.00 2.29
717 1076 6.861065 TTTCTTTCGGCCATCTGATTATAC 57.139 37.500 2.24 0.00 0.00 1.47
731 1090 4.116961 GGGTGTTTTTCCTTTTCTTTCGG 58.883 43.478 0.00 0.00 0.00 4.30
733 1092 4.116961 CCGGGTGTTTTTCCTTTTCTTTC 58.883 43.478 0.00 0.00 0.00 2.62
756 1115 0.541863 CTGGTTGTAGGCCTGTAGGG 59.458 60.000 17.99 0.00 35.18 3.53
757 1116 0.541863 CCTGGTTGTAGGCCTGTAGG 59.458 60.000 17.99 9.75 38.53 3.18
799 1159 3.317993 AGGAAAACAAAATGTCACGAGGG 59.682 43.478 0.00 0.00 0.00 4.30
827 1187 2.094675 GATGTCACAAGGATGGGGTTG 58.905 52.381 0.00 0.00 0.00 3.77
832 1194 2.487934 GGATCGATGTCACAAGGATGG 58.512 52.381 0.54 0.00 0.00 3.51
859 1221 3.496870 CCGATAAGGATTGGAAGGAAGGG 60.497 52.174 0.00 0.00 45.00 3.95
1197 1559 1.027357 GCTGGTACGACCCGAGATTA 58.973 55.000 0.00 0.00 37.50 1.75
1199 1561 2.478890 CGCTGGTACGACCCGAGAT 61.479 63.158 0.00 0.00 37.50 2.75
1212 1580 0.456312 GAGTAAGGTGTCGACGCTGG 60.456 60.000 26.79 0.00 0.00 4.85
1222 1590 1.079127 CCCAGCGGTGAGTAAGGTG 60.079 63.158 17.83 0.00 0.00 4.00
1311 1690 5.295292 ACTCGCAATATCTTCCATGTTCAAG 59.705 40.000 0.00 0.00 0.00 3.02
1318 1697 3.181475 ACGTGACTCGCAATATCTTCCAT 60.181 43.478 0.00 0.00 44.19 3.41
1410 1813 0.460987 GTGAGGAGGAGGCGATGTTG 60.461 60.000 0.00 0.00 0.00 3.33
1751 2188 1.523938 GCGTACAGAAGGGGATGCC 60.524 63.158 0.00 0.00 0.00 4.40
1794 2255 1.339631 CCGGCCCAGACAGTCATTTTA 60.340 52.381 2.66 0.00 0.00 1.52
1835 2304 6.841229 TGTATACAGGAAGATCCTCACAATCT 59.159 38.462 0.08 0.00 45.66 2.40
2297 2891 7.208080 GGTAGAGATTAGCCAACGATAGAAAA 58.792 38.462 0.00 0.00 41.38 2.29
2345 2939 6.569801 GCCTCAAAGGTAAAGTTGATGTTACC 60.570 42.308 4.73 4.73 46.52 2.85
2487 3206 8.531146 ACCCAGTTACTCATGAATTAATTTTGG 58.469 33.333 1.43 7.20 0.00 3.28
2507 3226 2.299867 GCAAATGACCATCAAACCCAGT 59.700 45.455 0.00 0.00 0.00 4.00
2585 3304 2.029649 GCTGGCATGCCAACATATTAGG 60.030 50.000 37.47 23.77 46.63 2.69
2656 3377 5.806654 TGATTGGCTATACTCACTATGCA 57.193 39.130 0.00 0.00 0.00 3.96
2907 4894 7.856145 AGAAAATAAACATCAGCCTAGTGAG 57.144 36.000 0.00 0.00 0.00 3.51
2978 4966 4.273318 AGCCATCTGGTTTGTAGGAATTC 58.727 43.478 0.00 0.00 37.57 2.17
2979 4967 4.018050 AGAGCCATCTGGTTTGTAGGAATT 60.018 41.667 0.00 0.00 37.57 2.17
3034 5022 2.432874 TCTGTGTCTCCTTTCGTTCCAA 59.567 45.455 0.00 0.00 0.00 3.53
3041 5050 4.006319 CCCAAGAATCTGTGTCTCCTTTC 58.994 47.826 0.00 0.00 0.00 2.62
3051 5060 4.387026 TCCATTTCACCCAAGAATCTGT 57.613 40.909 0.00 0.00 0.00 3.41
3091 5100 4.285260 ACAACCTTAAATCACCTAGACCGT 59.715 41.667 0.00 0.00 0.00 4.83
3093 5102 4.395231 GCACAACCTTAAATCACCTAGACC 59.605 45.833 0.00 0.00 0.00 3.85
3182 5193 1.747709 AGAGACACTGCCATGCAATC 58.252 50.000 0.00 0.00 38.41 2.67
3222 5234 2.154854 ATGATCGTGGGATAGTTGCG 57.845 50.000 0.00 0.00 31.51 4.85
3236 5248 7.201266 GCAATTGTTTCAGTTTCACGTATGATC 60.201 37.037 7.40 0.00 33.85 2.92
3237 5249 6.582295 GCAATTGTTTCAGTTTCACGTATGAT 59.418 34.615 7.40 0.00 33.85 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.