Multiple sequence alignment - TraesCS7A01G139100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G139100 chr7A 100.000 4319 0 0 1 4319 91359956 91364274 0.000000e+00 7976.0
1 TraesCS7A01G139100 chr7A 99.476 191 1 0 397 587 60260178 60259988 8.890000e-92 348.0
2 TraesCS7A01G139100 chr7A 97.561 41 1 0 2502 2542 563344832 563344792 2.150000e-08 71.3
3 TraesCS7A01G139100 chr7B 94.638 1753 70 4 728 2475 40653653 40655386 0.000000e+00 2695.0
4 TraesCS7A01G139100 chr7B 86.586 2065 178 43 1229 3285 40886432 40888405 0.000000e+00 2187.0
5 TraesCS7A01G139100 chr7B 88.123 1785 151 28 2548 4319 40655422 40657158 0.000000e+00 2065.0
6 TraesCS7A01G139100 chr7B 98.953 191 2 0 397 587 742959815 742960005 4.140000e-90 342.0
7 TraesCS7A01G139100 chr7B 97.386 153 4 0 41 193 105257572 105257724 1.190000e-65 261.0
8 TraesCS7A01G139100 chr7B 92.086 139 11 0 588 726 40653429 40653567 3.410000e-46 196.0
9 TraesCS7A01G139100 chr7B 84.066 182 26 1 1055 1233 40880961 40881142 5.740000e-39 172.0
10 TraesCS7A01G139100 chr7D 86.753 1925 186 37 610 2498 89829548 89831439 0.000000e+00 2078.0
11 TraesCS7A01G139100 chr7D 86.197 1449 139 30 2892 4319 89862703 89864111 0.000000e+00 1511.0
12 TraesCS7A01G139100 chr7D 96.168 835 32 0 2533 3367 89831538 89832372 0.000000e+00 1365.0
13 TraesCS7A01G139100 chr7D 88.257 545 47 13 3373 3912 89858997 89859529 1.690000e-178 636.0
14 TraesCS7A01G139100 chr7D 73.849 478 90 17 3438 3910 613889738 613890185 1.610000e-34 158.0
15 TraesCS7A01G139100 chr7D 91.667 48 4 0 2498 2545 529065148 529065195 2.790000e-07 67.6
16 TraesCS7A01G139100 chr3B 88.801 634 68 1 2563 3196 729921550 729920920 0.000000e+00 774.0
17 TraesCS7A01G139100 chr3B 85.014 714 87 12 2548 3254 729804624 729805324 0.000000e+00 708.0
18 TraesCS7A01G139100 chr3B 83.759 548 75 12 1933 2473 729922194 729921654 1.390000e-139 507.0
19 TraesCS7A01G139100 chr3B 83.364 547 76 10 1933 2473 729907675 729907138 3.880000e-135 492.0
20 TraesCS7A01G139100 chr3B 81.550 542 82 6 1930 2468 729803990 729804516 8.580000e-117 431.0
21 TraesCS7A01G139100 chr3B 77.372 685 133 17 1133 1806 729922990 729922317 1.880000e-103 387.0
22 TraesCS7A01G139100 chr3B 76.437 696 128 24 1133 1806 729908472 729907791 1.150000e-90 344.0
23 TraesCS7A01G139100 chr3B 97.462 197 5 0 397 593 483381566 483381370 1.920000e-88 337.0
24 TraesCS7A01G139100 chr3B 98.052 154 3 0 40 193 101920022 101920175 7.120000e-68 268.0
25 TraesCS7A01G139100 chr3D 88.264 622 70 1 2563 3184 550382441 550381823 0.000000e+00 741.0
26 TraesCS7A01G139100 chr3D 83.942 548 74 12 1933 2473 550383076 550382536 2.980000e-141 512.0
27 TraesCS7A01G139100 chr3D 78.425 635 118 16 1180 1806 550383873 550383250 3.130000e-106 396.0
28 TraesCS7A01G139100 chr3D 98.522 203 3 0 196 398 598873847 598873645 4.110000e-95 359.0
29 TraesCS7A01G139100 chr3D 97.403 154 4 0 40 193 598872067 598872220 3.310000e-66 263.0
30 TraesCS7A01G139100 chr3A 85.086 637 89 3 2548 3184 687205717 687206347 0.000000e+00 645.0
31 TraesCS7A01G139100 chr3A 79.783 554 82 13 1930 2471 687130790 687131325 4.080000e-100 375.0
32 TraesCS7A01G139100 chr3A 99.476 191 1 0 397 587 633128881 633128691 8.890000e-92 348.0
33 TraesCS7A01G139100 chr3A 95.238 42 2 0 2502 2543 489308336 489308295 2.790000e-07 67.6
34 TraesCS7A01G139100 chr6B 98.522 203 3 0 196 398 529920138 529920340 4.110000e-95 359.0
35 TraesCS7A01G139100 chr6B 97.403 154 4 0 40 193 450079618 450079465 3.310000e-66 263.0
36 TraesCS7A01G139100 chr6B 95.556 45 2 0 2500 2544 165353437 165353393 5.990000e-09 73.1
37 TraesCS7A01G139100 chr6B 97.561 41 1 0 2502 2542 351200099 351200139 2.150000e-08 71.3
38 TraesCS7A01G139100 chr6B 100.000 30 0 0 657 686 575940515 575940544 6.030000e-04 56.5
39 TraesCS7A01G139100 chr5D 78.832 548 104 12 2564 3102 59043821 59043277 4.110000e-95 359.0
40 TraesCS7A01G139100 chr5D 98.522 203 3 0 196 398 503281809 503281607 4.110000e-95 359.0
41 TraesCS7A01G139100 chr5D 98.030 203 4 0 196 398 6185905 6186107 1.910000e-93 353.0
42 TraesCS7A01G139100 chr5D 98.030 203 4 0 196 398 483808551 483808753 1.910000e-93 353.0
43 TraesCS7A01G139100 chr5D 98.030 203 4 0 196 398 503282335 503282133 1.910000e-93 353.0
44 TraesCS7A01G139100 chr5D 97.403 154 4 0 40 193 120798895 120798742 3.310000e-66 263.0
45 TraesCS7A01G139100 chr5D 97.403 154 4 0 40 193 167070958 167070805 3.310000e-66 263.0
46 TraesCS7A01G139100 chr1D 98.522 203 3 0 196 398 254401149 254400947 4.110000e-95 359.0
47 TraesCS7A01G139100 chr1D 84.790 309 47 0 2563 2871 462336255 462336563 1.170000e-80 311.0
48 TraesCS7A01G139100 chr1B 98.522 203 3 0 196 398 516681570 516681368 4.110000e-95 359.0
49 TraesCS7A01G139100 chr1B 98.958 192 1 1 397 587 672573235 672573426 4.140000e-90 342.0
50 TraesCS7A01G139100 chr6D 98.030 203 4 0 196 398 45516532 45516734 1.910000e-93 353.0
51 TraesCS7A01G139100 chr6D 96.753 154 5 0 40 193 45512540 45512693 1.540000e-64 257.0
52 TraesCS7A01G139100 chr4D 99.476 191 1 0 397 587 123272936 123272746 8.890000e-92 348.0
53 TraesCS7A01G139100 chr4D 98.953 191 2 0 397 587 123316325 123316135 4.140000e-90 342.0
54 TraesCS7A01G139100 chr4D 91.837 49 4 0 2498 2546 49248570 49248522 7.750000e-08 69.4
55 TraesCS7A01G139100 chrUn 98.953 191 2 0 397 587 206779522 206779332 4.140000e-90 342.0
56 TraesCS7A01G139100 chr2B 98.953 191 2 0 397 587 112821955 112821765 4.140000e-90 342.0
57 TraesCS7A01G139100 chr2D 97.403 154 4 0 40 193 2012677 2012830 3.310000e-66 263.0
58 TraesCS7A01G139100 chr2A 97.403 154 4 0 40 193 335831604 335831757 3.310000e-66 263.0
59 TraesCS7A01G139100 chr5B 75.992 504 111 8 2578 3076 448839477 448838979 7.170000e-63 252.0
60 TraesCS7A01G139100 chr5B 84.940 166 24 1 2250 2415 70961775 70961611 2.670000e-37 167.0
61 TraesCS7A01G139100 chr5B 85.714 63 8 1 617 679 527154986 527154925 1.000000e-06 65.8
62 TraesCS7A01G139100 chr5B 80.952 84 12 3 610 689 527176039 527175956 3.610000e-06 63.9
63 TraesCS7A01G139100 chr5B 80.263 76 11 3 618 689 527145290 527145215 2.000000e-03 54.7
64 TraesCS7A01G139100 chr1A 97.619 42 1 0 2502 2543 449840609 449840568 5.990000e-09 73.1
65 TraesCS7A01G139100 chr4B 97.561 41 1 0 2502 2542 395906836 395906876 2.150000e-08 71.3
66 TraesCS7A01G139100 chr5A 95.349 43 2 0 2502 2544 362170853 362170895 7.750000e-08 69.4
67 TraesCS7A01G139100 chr5A 81.928 83 11 3 610 689 548415240 548415159 2.790000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G139100 chr7A 91359956 91364274 4318 False 7976.000000 7976 100.000000 1 4319 1 chr7A.!!$F1 4318
1 TraesCS7A01G139100 chr7B 40886432 40888405 1973 False 2187.000000 2187 86.586000 1229 3285 1 chr7B.!!$F2 2056
2 TraesCS7A01G139100 chr7B 40653429 40657158 3729 False 1652.000000 2695 91.615667 588 4319 3 chr7B.!!$F5 3731
3 TraesCS7A01G139100 chr7D 89829548 89832372 2824 False 1721.500000 2078 91.460500 610 3367 2 chr7D.!!$F3 2757
4 TraesCS7A01G139100 chr7D 89858997 89864111 5114 False 1073.500000 1511 87.227000 2892 4319 2 chr7D.!!$F4 1427
5 TraesCS7A01G139100 chr3B 729803990 729805324 1334 False 569.500000 708 83.282000 1930 3254 2 chr3B.!!$F2 1324
6 TraesCS7A01G139100 chr3B 729920920 729922990 2070 True 556.000000 774 83.310667 1133 3196 3 chr3B.!!$R3 2063
7 TraesCS7A01G139100 chr3B 729907138 729908472 1334 True 418.000000 492 79.900500 1133 2473 2 chr3B.!!$R2 1340
8 TraesCS7A01G139100 chr3D 550381823 550383873 2050 True 549.666667 741 83.543667 1180 3184 3 chr3D.!!$R2 2004
9 TraesCS7A01G139100 chr3A 687205717 687206347 630 False 645.000000 645 85.086000 2548 3184 1 chr3A.!!$F2 636
10 TraesCS7A01G139100 chr3A 687130790 687131325 535 False 375.000000 375 79.783000 1930 2471 1 chr3A.!!$F1 541
11 TraesCS7A01G139100 chr5D 59043277 59043821 544 True 359.000000 359 78.832000 2564 3102 1 chr5D.!!$R1 538
12 TraesCS7A01G139100 chr5D 503281607 503282335 728 True 356.000000 359 98.276000 196 398 2 chr5D.!!$R4 202
13 TraesCS7A01G139100 chr6D 45512540 45516734 4194 False 305.000000 353 97.391500 40 398 2 chr6D.!!$F1 358

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
429 4266 0.035152 ATGCTGTGATGCGAAGGGAA 60.035 50.0 0.00 0.00 35.36 3.97 F
445 4282 0.039618 GGAAGGGGCCACTCAATTCA 59.960 55.0 8.74 0.00 0.00 2.57 F
498 4335 0.321564 TCCGCACTTGGGACAGATTG 60.322 55.0 0.00 0.00 42.39 2.67 F
499 4336 0.321564 CCGCACTTGGGACAGATTGA 60.322 55.0 0.00 0.00 42.39 2.57 F
553 4390 0.322008 AAGAAAGGGCTCAGCTTCCG 60.322 55.0 0.00 0.00 0.00 4.30 F
561 4398 0.386478 GCTCAGCTTCCGCAAAAGTG 60.386 55.0 0.00 0.00 39.10 3.16 F
2078 6141 0.455005 AGGGTAGCGTCTAACGAAGC 59.545 55.0 3.28 0.34 46.05 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2394 6464 0.108520 CGAGGCTGCCATTTTGCATT 60.109 50.000 22.65 0.0 41.16 3.56 R
2400 6470 1.065199 TGAAGATCGAGGCTGCCATTT 60.065 47.619 22.65 0.0 0.00 2.32 R
2403 6473 1.219124 GTGAAGATCGAGGCTGCCA 59.781 57.895 22.65 0.0 0.00 4.92 R
2476 6546 8.833231 ATACTTCGAACAATTATACCATCAGG 57.167 34.615 0.00 0.0 42.21 3.86 R
2525 6641 2.590611 AGTACTACTCCCTCCATCCCAA 59.409 50.000 0.00 0.0 0.00 4.12 R
2528 6644 5.246429 CCATTAAGTACTACTCCCTCCATCC 59.754 48.000 0.00 0.0 0.00 3.51 R
4067 10150 0.107165 GGCCAACCTATCCACAGTCC 60.107 60.000 0.00 0.0 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.152625 GCGTTGTGCTGCTAGGCG 62.153 66.667 0.00 2.19 41.73 5.52
18 19 2.432456 CGTTGTGCTGCTAGGCGA 60.432 61.111 0.00 0.00 34.52 5.54
19 20 2.027073 CGTTGTGCTGCTAGGCGAA 61.027 57.895 0.00 0.00 34.52 4.70
20 21 1.361668 CGTTGTGCTGCTAGGCGAAT 61.362 55.000 0.00 0.00 34.52 3.34
22 23 0.036483 TTGTGCTGCTAGGCGAATGA 60.036 50.000 0.00 0.00 34.52 2.57
23 24 0.740868 TGTGCTGCTAGGCGAATGAC 60.741 55.000 0.00 0.00 34.52 3.06
24 25 0.460987 GTGCTGCTAGGCGAATGACT 60.461 55.000 0.00 0.00 37.19 3.41
25 26 1.111277 TGCTGCTAGGCGAATGACTA 58.889 50.000 0.00 0.00 33.33 2.59
26 27 1.688735 TGCTGCTAGGCGAATGACTAT 59.311 47.619 0.00 0.00 34.41 2.12
27 28 2.103094 TGCTGCTAGGCGAATGACTATT 59.897 45.455 0.00 0.00 34.41 1.73
28 29 2.734079 GCTGCTAGGCGAATGACTATTC 59.266 50.000 0.00 0.00 34.41 1.75
30 31 4.564041 CTGCTAGGCGAATGACTATTCAT 58.436 43.478 0.00 0.00 44.98 2.57
31 32 4.309933 TGCTAGGCGAATGACTATTCATG 58.690 43.478 0.00 0.00 42.00 3.07
33 34 5.174395 GCTAGGCGAATGACTATTCATGAT 58.826 41.667 0.00 0.00 42.00 2.45
34 35 5.641209 GCTAGGCGAATGACTATTCATGATT 59.359 40.000 0.00 0.00 42.00 2.57
36 37 4.999950 AGGCGAATGACTATTCATGATTCC 59.000 41.667 0.00 0.00 42.00 3.01
37 38 4.756642 GGCGAATGACTATTCATGATTCCA 59.243 41.667 0.00 0.00 42.00 3.53
38 39 5.413833 GGCGAATGACTATTCATGATTCCAT 59.586 40.000 0.00 0.00 42.00 3.41
130 131 3.748048 CGTGTGACTTGAAGGACATGATT 59.252 43.478 11.33 0.00 0.00 2.57
144 145 6.636705 AGGACATGATTGATTGTGGATTTTG 58.363 36.000 0.00 0.00 0.00 2.44
193 194 0.461548 TGCTCTTGGCTCGACATAGG 59.538 55.000 0.00 0.00 42.39 2.57
202 464 5.420725 TGGCTCGACATAGGCATTATAAT 57.579 39.130 0.00 0.00 46.09 1.28
291 4128 5.621193 TGGCTATTTCTACATAGGGAAAGC 58.379 41.667 0.00 0.00 35.37 3.51
325 4162 1.255882 AATGCAAGCACGATTTGGGA 58.744 45.000 0.00 0.00 0.00 4.37
399 4236 4.078516 GGGTTCGAGTCCCGGGTG 62.079 72.222 22.86 9.45 39.14 4.61
400 4237 2.993264 GGTTCGAGTCCCGGGTGA 60.993 66.667 22.86 11.83 39.14 4.02
401 4238 2.356780 GGTTCGAGTCCCGGGTGAT 61.357 63.158 22.86 7.57 39.14 3.06
402 4239 1.141234 GTTCGAGTCCCGGGTGATC 59.859 63.158 22.86 15.70 39.14 2.92
403 4240 1.304630 TTCGAGTCCCGGGTGATCA 60.305 57.895 22.86 0.00 39.14 2.92
404 4241 1.320344 TTCGAGTCCCGGGTGATCAG 61.320 60.000 22.86 12.68 39.14 2.90
405 4242 2.786495 CGAGTCCCGGGTGATCAGG 61.786 68.421 22.86 0.56 33.91 3.86
406 4243 2.365635 AGTCCCGGGTGATCAGGG 60.366 66.667 22.86 11.53 46.40 4.45
407 4244 2.687566 GTCCCGGGTGATCAGGGT 60.688 66.667 22.86 0.00 45.27 4.34
408 4245 2.124085 TCCCGGGTGATCAGGGTT 59.876 61.111 22.86 0.00 45.27 4.11
409 4246 2.272146 CCCGGGTGATCAGGGTTG 59.728 66.667 14.18 0.00 40.27 3.77
410 4247 2.297895 CCCGGGTGATCAGGGTTGA 61.298 63.158 14.18 0.00 40.27 3.18
411 4248 1.635817 CCCGGGTGATCAGGGTTGAT 61.636 60.000 14.18 0.00 46.61 2.57
412 4249 0.464373 CCGGGTGATCAGGGTTGATG 60.464 60.000 0.00 0.00 44.01 3.07
413 4250 1.097547 CGGGTGATCAGGGTTGATGC 61.098 60.000 0.00 0.00 44.01 3.91
414 4251 0.257039 GGGTGATCAGGGTTGATGCT 59.743 55.000 0.00 0.00 44.01 3.79
415 4252 1.386533 GGTGATCAGGGTTGATGCTG 58.613 55.000 0.00 0.00 44.01 4.41
416 4253 1.340405 GGTGATCAGGGTTGATGCTGT 60.340 52.381 0.00 0.00 44.01 4.40
417 4254 1.741706 GTGATCAGGGTTGATGCTGTG 59.258 52.381 0.00 0.00 44.01 3.66
418 4255 1.629861 TGATCAGGGTTGATGCTGTGA 59.370 47.619 0.00 0.00 44.01 3.58
419 4256 2.240414 TGATCAGGGTTGATGCTGTGAT 59.760 45.455 0.00 0.00 44.01 3.06
420 4257 2.118313 TCAGGGTTGATGCTGTGATG 57.882 50.000 0.00 0.00 0.00 3.07
421 4258 0.454600 CAGGGTTGATGCTGTGATGC 59.545 55.000 0.00 0.00 0.00 3.91
422 4259 1.028330 AGGGTTGATGCTGTGATGCG 61.028 55.000 0.00 0.00 35.36 4.73
423 4260 1.026182 GGGTTGATGCTGTGATGCGA 61.026 55.000 0.00 0.00 35.36 5.10
424 4261 0.804364 GGTTGATGCTGTGATGCGAA 59.196 50.000 0.00 0.00 35.36 4.70
425 4262 1.202110 GGTTGATGCTGTGATGCGAAG 60.202 52.381 0.00 0.00 35.36 3.79
426 4263 1.089112 TTGATGCTGTGATGCGAAGG 58.911 50.000 0.00 0.00 35.36 3.46
427 4264 0.745486 TGATGCTGTGATGCGAAGGG 60.745 55.000 0.00 0.00 35.36 3.95
428 4265 0.462581 GATGCTGTGATGCGAAGGGA 60.463 55.000 0.00 0.00 35.36 4.20
429 4266 0.035152 ATGCTGTGATGCGAAGGGAA 60.035 50.000 0.00 0.00 35.36 3.97
430 4267 0.674581 TGCTGTGATGCGAAGGGAAG 60.675 55.000 0.00 0.00 35.36 3.46
431 4268 1.372087 GCTGTGATGCGAAGGGAAGG 61.372 60.000 0.00 0.00 0.00 3.46
432 4269 0.745845 CTGTGATGCGAAGGGAAGGG 60.746 60.000 0.00 0.00 0.00 3.95
433 4270 1.452108 GTGATGCGAAGGGAAGGGG 60.452 63.158 0.00 0.00 0.00 4.79
434 4271 2.517166 GATGCGAAGGGAAGGGGC 60.517 66.667 0.00 0.00 0.00 5.80
435 4272 4.129148 ATGCGAAGGGAAGGGGCC 62.129 66.667 0.00 0.00 0.00 5.80
438 4275 3.330720 CGAAGGGAAGGGGCCACT 61.331 66.667 0.00 0.00 0.00 4.00
439 4276 2.677848 GAAGGGAAGGGGCCACTC 59.322 66.667 8.74 1.03 0.00 3.51
440 4277 2.121506 AAGGGAAGGGGCCACTCA 60.122 61.111 8.74 0.00 0.00 3.41
441 4278 1.778383 AAGGGAAGGGGCCACTCAA 60.778 57.895 8.74 0.00 0.00 3.02
442 4279 1.149133 AAGGGAAGGGGCCACTCAAT 61.149 55.000 8.74 0.00 0.00 2.57
443 4280 1.149133 AGGGAAGGGGCCACTCAATT 61.149 55.000 8.74 0.00 0.00 2.32
444 4281 0.684479 GGGAAGGGGCCACTCAATTC 60.684 60.000 8.74 0.53 0.00 2.17
445 4282 0.039618 GGAAGGGGCCACTCAATTCA 59.960 55.000 8.74 0.00 0.00 2.57
446 4283 1.549950 GGAAGGGGCCACTCAATTCAA 60.550 52.381 8.74 0.00 0.00 2.69
447 4284 2.460669 GAAGGGGCCACTCAATTCAAT 58.539 47.619 8.74 0.00 0.00 2.57
448 4285 2.629017 AGGGGCCACTCAATTCAATT 57.371 45.000 0.00 0.00 0.00 2.32
449 4286 2.460669 AGGGGCCACTCAATTCAATTC 58.539 47.619 0.00 0.00 0.00 2.17
450 4287 2.178580 GGGGCCACTCAATTCAATTCA 58.821 47.619 4.39 0.00 0.00 2.57
451 4288 2.566724 GGGGCCACTCAATTCAATTCAA 59.433 45.455 4.39 0.00 0.00 2.69
452 4289 3.198417 GGGGCCACTCAATTCAATTCAAT 59.802 43.478 4.39 0.00 0.00 2.57
453 4290 4.186159 GGGCCACTCAATTCAATTCAATG 58.814 43.478 4.39 0.00 0.00 2.82
454 4291 4.322953 GGGCCACTCAATTCAATTCAATGT 60.323 41.667 4.39 0.00 0.00 2.71
455 4292 4.866486 GGCCACTCAATTCAATTCAATGTC 59.134 41.667 0.00 0.00 0.00 3.06
456 4293 4.560035 GCCACTCAATTCAATTCAATGTCG 59.440 41.667 0.00 0.00 0.00 4.35
457 4294 5.702865 CCACTCAATTCAATTCAATGTCGT 58.297 37.500 0.00 0.00 0.00 4.34
458 4295 6.622679 GCCACTCAATTCAATTCAATGTCGTA 60.623 38.462 0.00 0.00 0.00 3.43
459 4296 7.304735 CCACTCAATTCAATTCAATGTCGTAA 58.695 34.615 0.00 0.00 0.00 3.18
460 4297 7.970061 CCACTCAATTCAATTCAATGTCGTAAT 59.030 33.333 0.00 0.00 0.00 1.89
461 4298 9.003112 CACTCAATTCAATTCAATGTCGTAATC 57.997 33.333 0.00 0.00 0.00 1.75
462 4299 8.184192 ACTCAATTCAATTCAATGTCGTAATCC 58.816 33.333 0.00 0.00 0.00 3.01
463 4300 7.186128 TCAATTCAATTCAATGTCGTAATCCG 58.814 34.615 0.00 0.00 38.13 4.18
464 4301 6.918892 ATTCAATTCAATGTCGTAATCCGA 57.081 33.333 0.00 0.00 45.00 4.55
471 4308 4.349682 TCGTAATCCGACCTGGCT 57.650 55.556 0.00 0.00 41.60 4.75
472 4309 2.587080 TCGTAATCCGACCTGGCTT 58.413 52.632 0.00 0.00 41.60 4.35
473 4310 0.458669 TCGTAATCCGACCTGGCTTC 59.541 55.000 0.00 0.00 41.60 3.86
474 4311 0.460311 CGTAATCCGACCTGGCTTCT 59.540 55.000 0.00 0.00 39.56 2.85
475 4312 1.536284 CGTAATCCGACCTGGCTTCTC 60.536 57.143 0.00 0.00 39.56 2.87
476 4313 1.120530 TAATCCGACCTGGCTTCTCC 58.879 55.000 0.00 0.00 37.80 3.71
477 4314 0.618968 AATCCGACCTGGCTTCTCCT 60.619 55.000 0.00 0.00 37.80 3.69
478 4315 1.333636 ATCCGACCTGGCTTCTCCTG 61.334 60.000 0.00 0.00 37.80 3.86
479 4316 2.286523 CCGACCTGGCTTCTCCTGT 61.287 63.158 0.00 0.00 35.26 4.00
480 4317 1.216710 CGACCTGGCTTCTCCTGTC 59.783 63.158 0.00 0.00 35.40 3.51
481 4318 1.599576 GACCTGGCTTCTCCTGTCC 59.400 63.158 0.00 0.00 33.79 4.02
482 4319 2.232298 GACCTGGCTTCTCCTGTCCG 62.232 65.000 0.00 0.00 33.79 4.79
483 4320 2.125350 CTGGCTTCTCCTGTCCGC 60.125 66.667 0.00 0.00 35.26 5.54
484 4321 2.922503 TGGCTTCTCCTGTCCGCA 60.923 61.111 0.00 0.00 35.26 5.69
485 4322 2.435059 GGCTTCTCCTGTCCGCAC 60.435 66.667 0.00 0.00 0.00 5.34
486 4323 2.659610 GCTTCTCCTGTCCGCACT 59.340 61.111 0.00 0.00 0.00 4.40
487 4324 1.004440 GCTTCTCCTGTCCGCACTT 60.004 57.895 0.00 0.00 0.00 3.16
488 4325 1.294659 GCTTCTCCTGTCCGCACTTG 61.295 60.000 0.00 0.00 0.00 3.16
489 4326 0.671781 CTTCTCCTGTCCGCACTTGG 60.672 60.000 0.00 0.00 0.00 3.61
490 4327 2.046892 CTCCTGTCCGCACTTGGG 60.047 66.667 0.00 0.00 0.00 4.12
491 4328 2.525629 TCCTGTCCGCACTTGGGA 60.526 61.111 0.00 0.00 0.00 4.37
496 4333 3.805928 TCCGCACTTGGGACAGAT 58.194 55.556 0.00 0.00 42.39 2.90
497 4334 2.066340 TCCGCACTTGGGACAGATT 58.934 52.632 0.00 0.00 42.39 2.40
498 4335 0.321564 TCCGCACTTGGGACAGATTG 60.322 55.000 0.00 0.00 42.39 2.67
499 4336 0.321564 CCGCACTTGGGACAGATTGA 60.322 55.000 0.00 0.00 42.39 2.57
500 4337 1.679944 CCGCACTTGGGACAGATTGAT 60.680 52.381 0.00 0.00 42.39 2.57
501 4338 2.419990 CCGCACTTGGGACAGATTGATA 60.420 50.000 0.00 0.00 42.39 2.15
502 4339 2.609459 CGCACTTGGGACAGATTGATAC 59.391 50.000 0.00 0.00 42.39 2.24
503 4340 3.679917 CGCACTTGGGACAGATTGATACT 60.680 47.826 0.00 0.00 42.39 2.12
504 4341 3.873952 GCACTTGGGACAGATTGATACTC 59.126 47.826 0.00 0.00 42.39 2.59
505 4342 4.115516 CACTTGGGACAGATTGATACTCG 58.884 47.826 0.00 0.00 42.39 4.18
506 4343 3.769844 ACTTGGGACAGATTGATACTCGT 59.230 43.478 0.00 0.00 42.39 4.18
507 4344 4.223032 ACTTGGGACAGATTGATACTCGTT 59.777 41.667 0.00 0.00 42.39 3.85
508 4345 4.819105 TGGGACAGATTGATACTCGTTT 57.181 40.909 0.00 0.00 0.00 3.60
509 4346 5.160607 TGGGACAGATTGATACTCGTTTT 57.839 39.130 0.00 0.00 0.00 2.43
510 4347 5.556915 TGGGACAGATTGATACTCGTTTTT 58.443 37.500 0.00 0.00 0.00 1.94
529 4366 4.405116 TTTTGCTGGATTTGAACTTGCT 57.595 36.364 0.00 0.00 0.00 3.91
530 4367 4.405116 TTTGCTGGATTTGAACTTGCTT 57.595 36.364 0.00 0.00 0.00 3.91
531 4368 5.528043 TTTGCTGGATTTGAACTTGCTTA 57.472 34.783 0.00 0.00 0.00 3.09
532 4369 5.528043 TTGCTGGATTTGAACTTGCTTAA 57.472 34.783 0.00 0.00 0.00 1.85
533 4370 5.528043 TGCTGGATTTGAACTTGCTTAAA 57.472 34.783 0.00 0.00 0.00 1.52
534 4371 5.911752 TGCTGGATTTGAACTTGCTTAAAA 58.088 33.333 0.00 0.00 0.00 1.52
535 4372 6.344500 TGCTGGATTTGAACTTGCTTAAAAA 58.656 32.000 0.00 0.00 0.00 1.94
536 4373 6.479660 TGCTGGATTTGAACTTGCTTAAAAAG 59.520 34.615 0.00 0.00 0.00 2.27
537 4374 6.701400 GCTGGATTTGAACTTGCTTAAAAAGA 59.299 34.615 4.91 0.00 0.00 2.52
538 4375 7.224557 GCTGGATTTGAACTTGCTTAAAAAGAA 59.775 33.333 4.91 0.00 0.00 2.52
539 4376 9.097257 CTGGATTTGAACTTGCTTAAAAAGAAA 57.903 29.630 4.91 0.00 0.00 2.52
541 4378 8.551205 GGATTTGAACTTGCTTAAAAAGAAAGG 58.449 33.333 11.23 0.00 46.63 3.11
542 4379 7.841915 TTTGAACTTGCTTAAAAAGAAAGGG 57.158 32.000 11.23 0.00 46.63 3.95
543 4380 5.356426 TGAACTTGCTTAAAAAGAAAGGGC 58.644 37.500 11.23 4.32 46.63 5.19
544 4381 5.128663 TGAACTTGCTTAAAAAGAAAGGGCT 59.871 36.000 11.23 0.00 46.63 5.19
545 4382 5.201713 ACTTGCTTAAAAAGAAAGGGCTC 57.798 39.130 11.23 0.00 46.63 4.70
546 4383 4.649218 ACTTGCTTAAAAAGAAAGGGCTCA 59.351 37.500 11.23 0.00 46.63 4.26
547 4384 4.853924 TGCTTAAAAAGAAAGGGCTCAG 57.146 40.909 0.00 0.00 0.00 3.35
548 4385 3.005791 TGCTTAAAAAGAAAGGGCTCAGC 59.994 43.478 0.00 0.00 0.00 4.26
549 4386 3.256879 GCTTAAAAAGAAAGGGCTCAGCT 59.743 43.478 0.00 0.00 0.00 4.24
550 4387 4.262207 GCTTAAAAAGAAAGGGCTCAGCTT 60.262 41.667 0.00 0.00 0.00 3.74
551 4388 5.453567 TTAAAAAGAAAGGGCTCAGCTTC 57.546 39.130 0.00 0.00 0.00 3.86
552 4389 1.916506 AAAGAAAGGGCTCAGCTTCC 58.083 50.000 0.00 0.00 0.00 3.46
553 4390 0.322008 AAGAAAGGGCTCAGCTTCCG 60.322 55.000 0.00 0.00 0.00 4.30
554 4391 2.360475 AAAGGGCTCAGCTTCCGC 60.360 61.111 0.00 0.00 0.00 5.54
555 4392 3.196207 AAAGGGCTCAGCTTCCGCA 62.196 57.895 0.00 0.00 39.10 5.69
556 4393 2.697147 AAAGGGCTCAGCTTCCGCAA 62.697 55.000 0.00 0.00 39.10 4.85
557 4394 2.672996 GGGCTCAGCTTCCGCAAA 60.673 61.111 0.00 0.00 39.10 3.68
558 4395 2.268076 GGGCTCAGCTTCCGCAAAA 61.268 57.895 0.00 0.00 39.10 2.44
559 4396 1.211190 GGCTCAGCTTCCGCAAAAG 59.789 57.895 0.00 0.00 39.10 2.27
560 4397 1.518903 GGCTCAGCTTCCGCAAAAGT 61.519 55.000 0.00 0.00 39.10 2.66
561 4398 0.386478 GCTCAGCTTCCGCAAAAGTG 60.386 55.000 0.00 0.00 39.10 3.16
562 4399 1.229428 CTCAGCTTCCGCAAAAGTGA 58.771 50.000 0.00 0.70 39.10 3.41
563 4400 1.808945 CTCAGCTTCCGCAAAAGTGAT 59.191 47.619 0.00 0.00 39.10 3.06
564 4401 1.806542 TCAGCTTCCGCAAAAGTGATC 59.193 47.619 0.00 0.00 39.10 2.92
565 4402 0.798776 AGCTTCCGCAAAAGTGATCG 59.201 50.000 0.00 0.00 39.10 3.69
566 4403 0.796312 GCTTCCGCAAAAGTGATCGA 59.204 50.000 0.00 0.00 35.78 3.59
567 4404 1.398390 GCTTCCGCAAAAGTGATCGAT 59.602 47.619 0.00 0.00 35.78 3.59
568 4405 2.789092 GCTTCCGCAAAAGTGATCGATG 60.789 50.000 0.54 0.00 35.78 3.84
569 4406 1.368641 TCCGCAAAAGTGATCGATGG 58.631 50.000 0.54 0.00 0.00 3.51
570 4407 1.066502 TCCGCAAAAGTGATCGATGGA 60.067 47.619 0.54 0.00 0.00 3.41
571 4408 1.328680 CCGCAAAAGTGATCGATGGAG 59.671 52.381 0.54 0.00 0.00 3.86
572 4409 2.270923 CGCAAAAGTGATCGATGGAGA 58.729 47.619 0.54 0.00 0.00 3.71
573 4410 2.672874 CGCAAAAGTGATCGATGGAGAA 59.327 45.455 0.54 0.00 0.00 2.87
574 4411 3.242220 CGCAAAAGTGATCGATGGAGAAG 60.242 47.826 0.54 0.00 0.00 2.85
575 4412 3.486542 GCAAAAGTGATCGATGGAGAAGC 60.487 47.826 0.54 0.00 0.00 3.86
576 4413 3.902881 AAAGTGATCGATGGAGAAGCT 57.097 42.857 0.54 0.00 0.00 3.74
577 4414 3.451141 AAGTGATCGATGGAGAAGCTC 57.549 47.619 0.54 0.00 0.00 4.09
578 4415 2.382882 AGTGATCGATGGAGAAGCTCA 58.617 47.619 0.54 0.00 31.08 4.26
579 4416 2.762887 AGTGATCGATGGAGAAGCTCAA 59.237 45.455 0.54 0.00 31.08 3.02
580 4417 3.196469 AGTGATCGATGGAGAAGCTCAAA 59.804 43.478 0.54 0.00 31.08 2.69
581 4418 3.935203 GTGATCGATGGAGAAGCTCAAAA 59.065 43.478 0.54 0.00 31.08 2.44
582 4419 4.033817 GTGATCGATGGAGAAGCTCAAAAG 59.966 45.833 0.54 0.00 31.08 2.27
583 4420 3.685139 TCGATGGAGAAGCTCAAAAGT 57.315 42.857 0.00 0.00 31.08 2.66
584 4421 3.589988 TCGATGGAGAAGCTCAAAAGTC 58.410 45.455 0.00 0.00 31.08 3.01
585 4422 3.259374 TCGATGGAGAAGCTCAAAAGTCT 59.741 43.478 0.00 0.00 31.08 3.24
586 4423 3.616379 CGATGGAGAAGCTCAAAAGTCTC 59.384 47.826 2.74 2.74 36.57 3.36
605 4442 5.105146 AGTCTCGAGGCAATGAAGTAGAAAT 60.105 40.000 20.97 0.00 0.00 2.17
608 4445 5.245531 TCGAGGCAATGAAGTAGAAATTGT 58.754 37.500 0.00 0.00 34.48 2.71
726 4563 6.855836 TGACGTGACGGTATCTAGTAAAAAT 58.144 36.000 10.66 0.00 0.00 1.82
761 4684 4.582760 GGCAACGACGTCCATGTA 57.417 55.556 10.58 0.00 0.00 2.29
764 4687 1.136169 GGCAACGACGTCCATGTAAAC 60.136 52.381 10.58 0.00 0.00 2.01
942 4888 8.798859 TTGATCCAAATTCTCTTCTTAGAAGG 57.201 34.615 20.29 11.92 38.81 3.46
1028 4976 4.674475 TGAATTTCGATGTCATGGCAATG 58.326 39.130 3.01 0.00 34.88 2.82
1163 5118 3.217231 CCGTATGTCCGGGCTTCT 58.783 61.111 7.97 0.00 44.32 2.85
1280 5238 1.542547 GGCTTCTTCCAGACCGACAAA 60.543 52.381 0.00 0.00 0.00 2.83
1430 5391 1.490693 GCGCCATCATGTACGACTGG 61.491 60.000 0.00 0.00 0.00 4.00
1471 5432 1.982073 GAGCAATTCTTCGGCCACGG 61.982 60.000 2.24 0.00 41.39 4.94
1495 5459 3.866651 ACTTCTTCGAACATGGGATGAG 58.133 45.455 0.00 0.00 0.00 2.90
1833 5808 1.153647 CGTCCGCAATCTGCAGGTA 60.154 57.895 15.13 0.00 45.36 3.08
1851 5826 5.772521 CAGGTAAGGTCCTTGTTCAAAATG 58.227 41.667 14.84 0.00 35.37 2.32
2064 6127 3.491766 AGAACTCATTCTCCCAGGGTA 57.508 47.619 5.01 0.00 41.63 3.69
2065 6128 3.379452 AGAACTCATTCTCCCAGGGTAG 58.621 50.000 5.01 1.78 41.63 3.18
2066 6129 1.501582 ACTCATTCTCCCAGGGTAGC 58.498 55.000 5.01 0.00 0.00 3.58
2078 6141 0.455005 AGGGTAGCGTCTAACGAAGC 59.545 55.000 3.28 0.34 46.05 3.86
2095 6158 4.147701 CCGATGAGGCCATGGAAC 57.852 61.111 18.40 7.43 32.09 3.62
2187 6257 2.261671 GACGCCAAGAAGCTCGGA 59.738 61.111 0.00 0.00 0.00 4.55
2199 6269 2.184579 CTCGGAGAAGGCGGGTTC 59.815 66.667 0.00 0.00 34.09 3.62
2235 6305 0.615850 GGTTCCTGAAGGACCTGAGG 59.384 60.000 12.14 12.14 45.39 3.86
2238 6308 1.871418 TCCTGAAGGACCTGAGGATG 58.129 55.000 15.79 0.00 39.78 3.51
2273 6343 1.754226 GAGAGTGTCCAAGGGCTCTAG 59.246 57.143 0.00 0.00 38.31 2.43
2277 6347 0.840288 TGTCCAAGGGCTCTAGGCAA 60.840 55.000 5.85 0.00 44.01 4.52
2394 6464 1.141254 CTCCTCCTGGTCTACGAGCTA 59.859 57.143 0.00 0.00 34.23 3.32
2399 6469 1.409064 CCTGGTCTACGAGCTAATGCA 59.591 52.381 0.00 0.00 42.74 3.96
2400 6470 2.159099 CCTGGTCTACGAGCTAATGCAA 60.159 50.000 0.00 0.00 42.74 4.08
2403 6473 4.513442 TGGTCTACGAGCTAATGCAAAAT 58.487 39.130 0.00 0.00 42.74 1.82
2498 6612 6.425114 CCTCCTGATGGTATAATTGTTCGAAG 59.575 42.308 0.00 0.00 34.23 3.79
2500 6614 8.014070 TCCTGATGGTATAATTGTTCGAAGTA 57.986 34.615 0.00 0.00 34.23 2.24
2502 6616 9.923143 CCTGATGGTATAATTGTTCGAAGTATA 57.077 33.333 0.00 0.00 0.00 1.47
2535 6713 8.996024 AAACGTTTTTATATTTTGGGATGGAG 57.004 30.769 7.96 0.00 0.00 3.86
2834 7012 0.456221 CGGATGTCTACAGCTTCGGT 59.544 55.000 0.00 0.00 31.98 4.69
3074 9135 0.466189 CCATAAGGCAGGCCGTCAAT 60.466 55.000 1.00 0.00 41.95 2.57
3083 9144 1.447140 GGCCGTCAATGTGCTACGA 60.447 57.895 0.00 0.00 38.89 3.43
3256 9324 1.961277 ACGCTCGCTTCAGTTTGGG 60.961 57.895 0.00 0.00 0.00 4.12
3373 9442 4.926238 ACAGACATCTTTGAGTCATCGTTC 59.074 41.667 0.00 0.00 37.23 3.95
3374 9443 4.031089 CAGACATCTTTGAGTCATCGTTCG 59.969 45.833 0.00 0.00 37.23 3.95
3375 9444 3.914312 ACATCTTTGAGTCATCGTTCGT 58.086 40.909 0.00 0.00 0.00 3.85
3376 9445 4.307432 ACATCTTTGAGTCATCGTTCGTT 58.693 39.130 0.00 0.00 0.00 3.85
3377 9446 4.386049 ACATCTTTGAGTCATCGTTCGTTC 59.614 41.667 0.00 0.00 0.00 3.95
3378 9447 3.314553 TCTTTGAGTCATCGTTCGTTCC 58.685 45.455 0.00 0.00 0.00 3.62
3408 9477 1.210967 ACCTCCGGAACACAAACAAGA 59.789 47.619 5.23 0.00 0.00 3.02
3412 9482 3.138304 TCCGGAACACAAACAAGATGAG 58.862 45.455 0.00 0.00 0.00 2.90
3417 9487 1.603802 ACACAAACAAGATGAGCGTGG 59.396 47.619 0.00 0.00 0.00 4.94
3442 9512 2.304470 TCATTGGTCCGGATCAGACAAA 59.696 45.455 18.64 2.47 35.89 2.83
3447 9517 2.225727 GGTCCGGATCAGACAAAACAAC 59.774 50.000 10.69 0.00 35.89 3.32
3448 9518 2.875933 GTCCGGATCAGACAAAACAACA 59.124 45.455 7.81 0.00 34.27 3.33
3470 9541 2.365293 GGGTCAAGTGCAAGGTCAATTT 59.635 45.455 0.00 0.00 0.00 1.82
3471 9542 3.572255 GGGTCAAGTGCAAGGTCAATTTA 59.428 43.478 0.00 0.00 0.00 1.40
3536 9607 7.414436 GTGCTCAACACTACTAAATTCACAAA 58.586 34.615 0.00 0.00 46.41 2.83
3539 9610 7.591426 GCTCAACACTACTAAATTCACAAAAGG 59.409 37.037 0.00 0.00 0.00 3.11
3541 9612 7.776030 TCAACACTACTAAATTCACAAAAGGGA 59.224 33.333 0.00 0.00 0.00 4.20
3544 9615 8.164070 ACACTACTAAATTCACAAAAGGGATCT 58.836 33.333 0.00 0.00 0.00 2.75
3567 9638 2.939103 CCTAAGATGGCTTTGGTTCGAG 59.061 50.000 0.00 0.00 40.66 4.04
3568 9639 2.568623 AAGATGGCTTTGGTTCGAGT 57.431 45.000 0.00 0.00 0.00 4.18
3571 9642 2.151202 GATGGCTTTGGTTCGAGTGAA 58.849 47.619 0.00 0.00 0.00 3.18
3572 9643 6.538183 TAAGATGGCTTTGGTTCGAGTGAAC 61.538 44.000 0.00 0.00 42.98 3.18
3584 9655 1.136884 CGAGTGAACGAACGCTCAAAG 60.137 52.381 19.90 6.91 44.53 2.77
3585 9656 2.124903 GAGTGAACGAACGCTCAAAGA 58.875 47.619 17.02 0.00 43.98 2.52
3644 9715 9.770097 CATAATCTTAACCTCTTCTATGCTTCA 57.230 33.333 0.00 0.00 0.00 3.02
3651 9722 4.999950 ACCTCTTCTATGCTTCAACAACTG 59.000 41.667 0.00 0.00 0.00 3.16
3702 9774 2.917454 TGGATGCGCCATGGATCA 59.083 55.556 18.40 12.54 46.48 2.92
3714 9788 3.747388 GCCATGGATCAATAACCGGAAGA 60.747 47.826 18.40 0.00 0.00 2.87
3734 9809 1.548081 CAAGGACATTGTGCCCATCA 58.452 50.000 4.52 0.00 33.95 3.07
3735 9810 2.104967 CAAGGACATTGTGCCCATCAT 58.895 47.619 4.52 0.00 33.95 2.45
3736 9811 2.498481 CAAGGACATTGTGCCCATCATT 59.502 45.455 4.52 0.00 33.95 2.57
3737 9812 2.823959 AGGACATTGTGCCCATCATTT 58.176 42.857 4.52 0.00 0.00 2.32
3738 9813 3.175594 AGGACATTGTGCCCATCATTTT 58.824 40.909 4.52 0.00 0.00 1.82
3739 9814 3.583966 AGGACATTGTGCCCATCATTTTT 59.416 39.130 4.52 0.00 0.00 1.94
3740 9815 3.685756 GGACATTGTGCCCATCATTTTTG 59.314 43.478 0.00 0.00 0.00 2.44
3741 9816 4.563168 GGACATTGTGCCCATCATTTTTGA 60.563 41.667 0.00 0.00 0.00 2.69
3742 9817 4.571919 ACATTGTGCCCATCATTTTTGAG 58.428 39.130 0.00 0.00 0.00 3.02
3743 9818 3.681593 TTGTGCCCATCATTTTTGAGG 57.318 42.857 0.00 0.00 0.00 3.86
3744 9819 1.275856 TGTGCCCATCATTTTTGAGGC 59.724 47.619 0.00 0.00 40.87 4.70
3746 9821 1.275856 TGCCCATCATTTTTGAGGCAC 59.724 47.619 5.19 0.00 45.08 5.01
3752 9827 2.513753 TCATTTTTGAGGCACCATCGT 58.486 42.857 0.00 0.00 0.00 3.73
3759 9834 0.804989 GAGGCACCATCGTGGAAAAG 59.195 55.000 10.46 0.60 40.96 2.27
3766 9841 3.067461 CACCATCGTGGAAAAGTTGGAAA 59.933 43.478 10.46 0.00 40.96 3.13
3784 9859 5.016831 TGGAAAATAAAGGAGGCTCTTTCC 58.983 41.667 25.37 25.37 40.38 3.13
3785 9860 5.016831 GGAAAATAAAGGAGGCTCTTTCCA 58.983 41.667 26.38 14.36 39.94 3.53
3812 9887 2.627771 TGGGTGTCCAAGGTCAAGT 58.372 52.632 0.00 0.00 40.73 3.16
3816 9891 2.375146 GGTGTCCAAGGTCAAGTTGTT 58.625 47.619 2.11 0.00 0.00 2.83
3833 9908 3.462483 TGTTAGCGAACTTCACCTTCA 57.538 42.857 11.13 0.00 36.45 3.02
3841 9916 3.003689 CGAACTTCACCTTCAAGCACATT 59.996 43.478 0.00 0.00 0.00 2.71
3843 9918 3.554934 ACTTCACCTTCAAGCACATTCA 58.445 40.909 0.00 0.00 0.00 2.57
3902 9977 2.125552 TTGACGCTCATGCCGAGG 60.126 61.111 11.67 0.00 42.55 4.63
3903 9978 4.819761 TGACGCTCATGCCGAGGC 62.820 66.667 7.26 7.26 42.55 4.70
3908 9983 3.531207 CTCATGCCGAGGCCGAGA 61.531 66.667 19.83 11.01 40.12 4.04
3920 9998 0.749454 GGCCGAGATTGGAAGCACAT 60.749 55.000 0.00 0.00 0.00 3.21
3922 10000 1.869767 GCCGAGATTGGAAGCACATAG 59.130 52.381 0.00 0.00 0.00 2.23
3942 10020 0.179032 ACGATGGGCATTAATCCGCA 60.179 50.000 0.00 0.00 0.00 5.69
3944 10022 1.609208 GATGGGCATTAATCCGCAGT 58.391 50.000 2.36 0.00 0.00 4.40
3955 10033 1.082117 ATCCGCAGTTTCCGCTTACG 61.082 55.000 0.00 0.00 39.67 3.18
4012 10090 0.527565 GCATGCGGTGTGGAAATCTT 59.472 50.000 0.00 0.00 0.00 2.40
4013 10091 1.733389 GCATGCGGTGTGGAAATCTTG 60.733 52.381 0.00 0.00 0.00 3.02
4014 10092 1.135315 CATGCGGTGTGGAAATCTTGG 60.135 52.381 0.00 0.00 0.00 3.61
4015 10093 0.893270 TGCGGTGTGGAAATCTTGGG 60.893 55.000 0.00 0.00 0.00 4.12
4019 10097 0.251787 GTGTGGAAATCTTGGGCCCT 60.252 55.000 25.70 0.00 0.00 5.19
4023 10101 0.396278 GGAAATCTTGGGCCCTCCTG 60.396 60.000 25.70 10.39 36.20 3.86
4029 10112 0.991920 CTTGGGCCCTCCTGAAAGTA 59.008 55.000 25.70 0.00 36.20 2.24
4035 10118 4.044825 TGGGCCCTCCTGAAAGTAAAATTA 59.955 41.667 25.70 0.00 36.20 1.40
4040 10123 6.095021 GCCCTCCTGAAAGTAAAATTATTCGT 59.905 38.462 0.00 0.00 0.00 3.85
4065 10148 1.289160 TGGCCACTCAAGATAGGCTT 58.711 50.000 0.00 0.00 46.23 4.35
4066 10149 1.635487 TGGCCACTCAAGATAGGCTTT 59.365 47.619 0.00 0.00 46.23 3.51
4067 10150 2.019984 GGCCACTCAAGATAGGCTTTG 58.980 52.381 0.00 0.00 46.23 2.77
4068 10151 2.019984 GCCACTCAAGATAGGCTTTGG 58.980 52.381 0.00 0.00 43.70 3.28
4069 10152 2.356125 GCCACTCAAGATAGGCTTTGGA 60.356 50.000 0.00 0.00 43.70 3.53
4070 10153 3.274288 CCACTCAAGATAGGCTTTGGAC 58.726 50.000 0.00 0.00 35.07 4.02
4071 10154 3.054802 CCACTCAAGATAGGCTTTGGACT 60.055 47.826 0.00 0.00 35.07 3.85
4072 10155 3.937706 CACTCAAGATAGGCTTTGGACTG 59.062 47.826 0.00 0.00 33.60 3.51
4073 10156 3.584848 ACTCAAGATAGGCTTTGGACTGT 59.415 43.478 0.00 0.00 33.60 3.55
4074 10157 3.937706 CTCAAGATAGGCTTTGGACTGTG 59.062 47.826 0.00 0.00 33.60 3.66
4075 10158 3.012518 CAAGATAGGCTTTGGACTGTGG 58.987 50.000 0.00 0.00 33.60 4.17
4087 10170 0.462047 GACTGTGGATAGGTTGGCCG 60.462 60.000 0.00 0.00 40.50 6.13
4092 10175 2.499685 GATAGGTTGGCCGAGCGT 59.500 61.111 16.53 9.54 40.50 5.07
4153 10236 1.140852 AGCAAGAATACAGGGCGCATA 59.859 47.619 10.83 0.00 0.00 3.14
4169 10252 4.379394 GGCGCATATTTTCTTCAAGTGTCA 60.379 41.667 10.83 0.00 0.00 3.58
4179 10262 7.915293 TTTCTTCAAGTGTCACTTCACTAAA 57.085 32.000 15.48 10.87 46.25 1.85
4181 10264 5.815740 TCTTCAAGTGTCACTTCACTAAACC 59.184 40.000 15.48 0.00 46.25 3.27
4190 10274 3.502211 CACTTCACTAAACCGCTTTGGAT 59.498 43.478 0.00 0.00 42.00 3.41
4194 10278 5.155278 TCACTAAACCGCTTTGGATCTTA 57.845 39.130 0.00 0.00 42.00 2.10
4197 10281 5.411669 CACTAAACCGCTTTGGATCTTAGTT 59.588 40.000 0.00 0.00 42.00 2.24
4198 10282 6.592607 CACTAAACCGCTTTGGATCTTAGTTA 59.407 38.462 0.00 0.00 42.00 2.24
4199 10283 7.118680 CACTAAACCGCTTTGGATCTTAGTTAA 59.881 37.037 0.00 0.00 42.00 2.01
4200 10284 6.496338 AAACCGCTTTGGATCTTAGTTAAG 57.504 37.500 0.00 0.00 42.00 1.85
4201 10285 4.514401 ACCGCTTTGGATCTTAGTTAAGG 58.486 43.478 0.00 0.00 42.00 2.69
4202 10286 4.224370 ACCGCTTTGGATCTTAGTTAAGGA 59.776 41.667 0.00 0.00 42.00 3.36
4203 10287 5.104485 ACCGCTTTGGATCTTAGTTAAGGAT 60.104 40.000 0.00 0.00 42.00 3.24
4204 10288 5.823045 CCGCTTTGGATCTTAGTTAAGGATT 59.177 40.000 0.00 0.00 42.00 3.01
4205 10289 6.238484 CCGCTTTGGATCTTAGTTAAGGATTG 60.238 42.308 0.00 0.00 42.00 2.67
4206 10290 6.538742 CGCTTTGGATCTTAGTTAAGGATTGA 59.461 38.462 0.00 0.00 34.14 2.57
4207 10291 7.466050 CGCTTTGGATCTTAGTTAAGGATTGAC 60.466 40.741 0.00 0.00 34.38 3.18
4231 10315 3.056179 TCATTTAGTGAGCATCGACACCA 60.056 43.478 0.00 0.00 38.61 4.17
4282 10366 3.341823 GACTGGTAGGTCAAGTAGTCGA 58.658 50.000 0.00 0.00 36.35 4.20
4287 10371 4.009002 GGTAGGTCAAGTAGTCGAACTCT 58.991 47.826 0.00 0.00 30.13 3.24
4295 10379 3.498334 AGTAGTCGAACTCTTCCAACCT 58.502 45.455 0.00 0.00 0.00 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.152625 CGCCTAGCAGCACAACGC 62.153 66.667 0.00 0.00 42.91 4.84
5 6 0.460987 AGTCATTCGCCTAGCAGCAC 60.461 55.000 0.00 0.00 0.00 4.40
6 7 1.111277 TAGTCATTCGCCTAGCAGCA 58.889 50.000 0.00 0.00 0.00 4.41
7 8 2.447244 ATAGTCATTCGCCTAGCAGC 57.553 50.000 0.00 0.00 0.00 5.25
9 10 4.039124 TCATGAATAGTCATTCGCCTAGCA 59.961 41.667 2.22 0.00 42.03 3.49
11 12 6.312426 GGAATCATGAATAGTCATTCGCCTAG 59.688 42.308 2.22 0.00 42.03 3.02
12 13 6.166279 GGAATCATGAATAGTCATTCGCCTA 58.834 40.000 2.22 0.00 42.03 3.93
13 14 4.999950 GGAATCATGAATAGTCATTCGCCT 59.000 41.667 2.22 0.00 42.03 5.52
14 15 4.756642 TGGAATCATGAATAGTCATTCGCC 59.243 41.667 2.22 3.90 42.03 5.54
15 16 5.929697 TGGAATCATGAATAGTCATTCGC 57.070 39.130 2.22 0.00 42.03 4.70
30 31 7.471679 TCTTTTCATTGCAAAGTGATGGAATCA 60.472 33.333 1.71 0.00 45.39 2.57
31 32 6.869913 TCTTTTCATTGCAAAGTGATGGAATC 59.130 34.615 1.71 0.00 39.03 2.52
33 34 6.159299 TCTTTTCATTGCAAAGTGATGGAA 57.841 33.333 1.71 0.00 35.04 3.53
34 35 5.279106 CCTCTTTTCATTGCAAAGTGATGGA 60.279 40.000 1.71 2.26 33.61 3.41
36 37 5.775686 TCCTCTTTTCATTGCAAAGTGATG 58.224 37.500 1.71 0.00 33.61 3.07
37 38 6.409524 TTCCTCTTTTCATTGCAAAGTGAT 57.590 33.333 1.71 0.00 33.61 3.06
38 39 5.850557 TTCCTCTTTTCATTGCAAAGTGA 57.149 34.783 1.71 0.00 33.61 3.41
144 145 7.602644 TCATTACTATGGAAAACGATGGATAGC 59.397 37.037 0.00 0.00 32.40 2.97
154 155 9.860898 AAGAGCATTTTCATTACTATGGAAAAC 57.139 29.630 0.00 0.00 41.43 2.43
291 4128 2.133553 TGCATTTTTCATTGCACACGG 58.866 42.857 0.00 0.00 43.54 4.94
325 4162 9.025041 CCTTGTTACAATAGAGAAAAATCCCTT 57.975 33.333 0.00 0.00 0.00 3.95
398 4235 1.629861 TCACAGCATCAACCCTGATCA 59.370 47.619 0.00 0.00 40.49 2.92
399 4236 2.408271 TCACAGCATCAACCCTGATC 57.592 50.000 0.00 0.00 40.49 2.92
400 4237 2.651455 CATCACAGCATCAACCCTGAT 58.349 47.619 0.00 0.00 43.40 2.90
401 4238 1.951895 GCATCACAGCATCAACCCTGA 60.952 52.381 0.00 0.00 35.56 3.86
402 4239 0.454600 GCATCACAGCATCAACCCTG 59.545 55.000 0.00 0.00 35.26 4.45
403 4240 1.028330 CGCATCACAGCATCAACCCT 61.028 55.000 0.00 0.00 0.00 4.34
404 4241 1.026182 TCGCATCACAGCATCAACCC 61.026 55.000 0.00 0.00 0.00 4.11
405 4242 0.804364 TTCGCATCACAGCATCAACC 59.196 50.000 0.00 0.00 0.00 3.77
406 4243 1.202110 CCTTCGCATCACAGCATCAAC 60.202 52.381 0.00 0.00 0.00 3.18
407 4244 1.089112 CCTTCGCATCACAGCATCAA 58.911 50.000 0.00 0.00 0.00 2.57
408 4245 0.745486 CCCTTCGCATCACAGCATCA 60.745 55.000 0.00 0.00 0.00 3.07
409 4246 0.462581 TCCCTTCGCATCACAGCATC 60.463 55.000 0.00 0.00 0.00 3.91
410 4247 0.035152 TTCCCTTCGCATCACAGCAT 60.035 50.000 0.00 0.00 0.00 3.79
411 4248 0.674581 CTTCCCTTCGCATCACAGCA 60.675 55.000 0.00 0.00 0.00 4.41
412 4249 1.372087 CCTTCCCTTCGCATCACAGC 61.372 60.000 0.00 0.00 0.00 4.40
413 4250 0.745845 CCCTTCCCTTCGCATCACAG 60.746 60.000 0.00 0.00 0.00 3.66
414 4251 1.299648 CCCTTCCCTTCGCATCACA 59.700 57.895 0.00 0.00 0.00 3.58
415 4252 1.452108 CCCCTTCCCTTCGCATCAC 60.452 63.158 0.00 0.00 0.00 3.06
416 4253 2.998097 CCCCTTCCCTTCGCATCA 59.002 61.111 0.00 0.00 0.00 3.07
417 4254 2.517166 GCCCCTTCCCTTCGCATC 60.517 66.667 0.00 0.00 0.00 3.91
418 4255 4.129148 GGCCCCTTCCCTTCGCAT 62.129 66.667 0.00 0.00 0.00 4.73
421 4258 3.330720 AGTGGCCCCTTCCCTTCG 61.331 66.667 0.00 0.00 0.00 3.79
422 4259 1.789576 TTGAGTGGCCCCTTCCCTTC 61.790 60.000 0.00 0.00 0.00 3.46
423 4260 1.149133 ATTGAGTGGCCCCTTCCCTT 61.149 55.000 0.00 0.00 0.00 3.95
424 4261 1.149133 AATTGAGTGGCCCCTTCCCT 61.149 55.000 0.00 0.00 0.00 4.20
425 4262 0.684479 GAATTGAGTGGCCCCTTCCC 60.684 60.000 0.00 0.00 0.00 3.97
426 4263 0.039618 TGAATTGAGTGGCCCCTTCC 59.960 55.000 0.00 0.00 0.00 3.46
427 4264 1.923356 TTGAATTGAGTGGCCCCTTC 58.077 50.000 0.00 0.00 0.00 3.46
428 4265 2.629017 ATTGAATTGAGTGGCCCCTT 57.371 45.000 0.00 0.00 0.00 3.95
429 4266 2.225343 TGAATTGAATTGAGTGGCCCCT 60.225 45.455 0.00 0.00 0.00 4.79
430 4267 2.178580 TGAATTGAATTGAGTGGCCCC 58.821 47.619 0.00 0.00 0.00 5.80
431 4268 3.959535 TTGAATTGAATTGAGTGGCCC 57.040 42.857 0.00 0.00 0.00 5.80
432 4269 4.824289 ACATTGAATTGAATTGAGTGGCC 58.176 39.130 0.00 0.00 0.00 5.36
433 4270 4.560035 CGACATTGAATTGAATTGAGTGGC 59.440 41.667 5.08 0.76 0.00 5.01
434 4271 5.702865 ACGACATTGAATTGAATTGAGTGG 58.297 37.500 5.08 0.00 0.00 4.00
435 4272 8.900511 ATTACGACATTGAATTGAATTGAGTG 57.099 30.769 0.00 0.00 0.00 3.51
436 4273 8.184192 GGATTACGACATTGAATTGAATTGAGT 58.816 33.333 0.00 0.00 0.00 3.41
437 4274 8.552469 GGATTACGACATTGAATTGAATTGAG 57.448 34.615 0.00 0.00 0.00 3.02
454 4291 0.458669 GAAGCCAGGTCGGATTACGA 59.541 55.000 0.00 0.00 45.76 3.43
455 4292 0.460311 AGAAGCCAGGTCGGATTACG 59.540 55.000 0.00 0.00 45.76 3.18
456 4293 1.202545 GGAGAAGCCAGGTCGGATTAC 60.203 57.143 0.00 0.00 45.76 1.89
457 4294 1.120530 GGAGAAGCCAGGTCGGATTA 58.879 55.000 0.00 0.00 45.76 1.75
459 4296 1.002274 AGGAGAAGCCAGGTCGGAT 59.998 57.895 0.00 0.00 40.02 4.18
460 4297 1.984570 CAGGAGAAGCCAGGTCGGA 60.985 63.158 0.00 0.00 40.02 4.55
461 4298 2.232298 GACAGGAGAAGCCAGGTCGG 62.232 65.000 0.00 0.00 40.02 4.79
462 4299 1.216710 GACAGGAGAAGCCAGGTCG 59.783 63.158 0.00 0.00 40.02 4.79
463 4300 1.599576 GGACAGGAGAAGCCAGGTC 59.400 63.158 0.00 0.00 40.51 3.85
464 4301 2.286523 CGGACAGGAGAAGCCAGGT 61.287 63.158 0.00 0.00 40.02 4.00
465 4302 2.581354 CGGACAGGAGAAGCCAGG 59.419 66.667 0.00 0.00 40.02 4.45
466 4303 2.125350 GCGGACAGGAGAAGCCAG 60.125 66.667 0.00 0.00 40.02 4.85
467 4304 2.922503 TGCGGACAGGAGAAGCCA 60.923 61.111 0.00 0.00 40.02 4.75
468 4305 2.435059 GTGCGGACAGGAGAAGCC 60.435 66.667 0.63 0.00 0.00 4.35
469 4306 1.004440 AAGTGCGGACAGGAGAAGC 60.004 57.895 10.52 0.00 0.00 3.86
470 4307 0.671781 CCAAGTGCGGACAGGAGAAG 60.672 60.000 10.52 0.00 0.00 2.85
471 4308 1.371183 CCAAGTGCGGACAGGAGAA 59.629 57.895 10.52 0.00 0.00 2.87
472 4309 2.583441 CCCAAGTGCGGACAGGAGA 61.583 63.158 17.92 0.00 0.00 3.71
473 4310 2.046892 CCCAAGTGCGGACAGGAG 60.047 66.667 17.92 6.44 0.00 3.69
474 4311 2.525629 TCCCAAGTGCGGACAGGA 60.526 61.111 17.92 13.50 0.00 3.86
479 4316 0.321564 CAATCTGTCCCAAGTGCGGA 60.322 55.000 0.00 0.00 0.00 5.54
480 4317 0.321564 TCAATCTGTCCCAAGTGCGG 60.322 55.000 0.00 0.00 0.00 5.69
481 4318 1.742761 ATCAATCTGTCCCAAGTGCG 58.257 50.000 0.00 0.00 0.00 5.34
482 4319 3.873952 GAGTATCAATCTGTCCCAAGTGC 59.126 47.826 0.00 0.00 33.17 4.40
483 4320 4.115516 CGAGTATCAATCTGTCCCAAGTG 58.884 47.826 0.00 0.00 33.17 3.16
484 4321 3.769844 ACGAGTATCAATCTGTCCCAAGT 59.230 43.478 0.00 0.00 33.17 3.16
485 4322 4.392921 ACGAGTATCAATCTGTCCCAAG 57.607 45.455 0.00 0.00 33.17 3.61
486 4323 4.819105 AACGAGTATCAATCTGTCCCAA 57.181 40.909 0.00 0.00 33.17 4.12
487 4324 4.819105 AAACGAGTATCAATCTGTCCCA 57.181 40.909 0.00 0.00 33.17 4.37
507 4344 4.768583 AGCAAGTTCAAATCCAGCAAAAA 58.231 34.783 0.00 0.00 0.00 1.94
508 4345 4.405116 AGCAAGTTCAAATCCAGCAAAA 57.595 36.364 0.00 0.00 0.00 2.44
509 4346 4.405116 AAGCAAGTTCAAATCCAGCAAA 57.595 36.364 0.00 0.00 0.00 3.68
510 4347 5.528043 TTAAGCAAGTTCAAATCCAGCAA 57.472 34.783 0.00 0.00 0.00 3.91
511 4348 5.528043 TTTAAGCAAGTTCAAATCCAGCA 57.472 34.783 0.00 0.00 0.00 4.41
512 4349 6.701400 TCTTTTTAAGCAAGTTCAAATCCAGC 59.299 34.615 0.00 0.00 0.00 4.85
513 4350 8.647143 TTCTTTTTAAGCAAGTTCAAATCCAG 57.353 30.769 0.00 0.00 0.00 3.86
514 4351 9.097257 CTTTCTTTTTAAGCAAGTTCAAATCCA 57.903 29.630 0.00 0.00 28.88 3.41
515 4352 8.551205 CCTTTCTTTTTAAGCAAGTTCAAATCC 58.449 33.333 0.00 0.00 31.05 3.01
516 4353 8.551205 CCCTTTCTTTTTAAGCAAGTTCAAATC 58.449 33.333 0.00 0.00 31.05 2.17
517 4354 7.012327 GCCCTTTCTTTTTAAGCAAGTTCAAAT 59.988 33.333 0.00 0.00 31.05 2.32
518 4355 6.315144 GCCCTTTCTTTTTAAGCAAGTTCAAA 59.685 34.615 0.00 0.00 31.05 2.69
519 4356 5.815222 GCCCTTTCTTTTTAAGCAAGTTCAA 59.185 36.000 0.00 0.00 31.05 2.69
520 4357 5.128663 AGCCCTTTCTTTTTAAGCAAGTTCA 59.871 36.000 0.00 0.00 31.05 3.18
521 4358 5.601662 AGCCCTTTCTTTTTAAGCAAGTTC 58.398 37.500 0.00 0.00 31.05 3.01
522 4359 5.128663 TGAGCCCTTTCTTTTTAAGCAAGTT 59.871 36.000 0.00 0.00 31.05 2.66
523 4360 4.649218 TGAGCCCTTTCTTTTTAAGCAAGT 59.351 37.500 0.00 0.00 31.05 3.16
524 4361 5.200368 TGAGCCCTTTCTTTTTAAGCAAG 57.800 39.130 0.00 0.00 32.52 4.01
525 4362 4.501400 GCTGAGCCCTTTCTTTTTAAGCAA 60.501 41.667 0.00 0.00 0.00 3.91
526 4363 3.005791 GCTGAGCCCTTTCTTTTTAAGCA 59.994 43.478 0.00 0.00 0.00 3.91
527 4364 3.256879 AGCTGAGCCCTTTCTTTTTAAGC 59.743 43.478 0.00 0.00 0.00 3.09
528 4365 5.459536 AAGCTGAGCCCTTTCTTTTTAAG 57.540 39.130 0.00 0.00 0.00 1.85
529 4366 4.280929 GGAAGCTGAGCCCTTTCTTTTTAA 59.719 41.667 0.00 0.00 0.00 1.52
530 4367 3.826729 GGAAGCTGAGCCCTTTCTTTTTA 59.173 43.478 0.00 0.00 0.00 1.52
531 4368 2.630098 GGAAGCTGAGCCCTTTCTTTTT 59.370 45.455 0.00 0.00 0.00 1.94
532 4369 2.242926 GGAAGCTGAGCCCTTTCTTTT 58.757 47.619 0.00 0.00 0.00 2.27
533 4370 1.884067 CGGAAGCTGAGCCCTTTCTTT 60.884 52.381 0.00 0.00 0.00 2.52
534 4371 0.322008 CGGAAGCTGAGCCCTTTCTT 60.322 55.000 0.00 0.00 0.00 2.52
535 4372 1.298014 CGGAAGCTGAGCCCTTTCT 59.702 57.895 0.00 0.00 0.00 2.52
536 4373 3.896479 CGGAAGCTGAGCCCTTTC 58.104 61.111 0.00 0.00 0.00 2.62
548 4385 2.223112 CCATCGATCACTTTTGCGGAAG 60.223 50.000 0.00 0.00 0.00 3.46
549 4386 1.737236 CCATCGATCACTTTTGCGGAA 59.263 47.619 0.00 0.00 0.00 4.30
550 4387 1.066502 TCCATCGATCACTTTTGCGGA 60.067 47.619 0.00 0.00 0.00 5.54
551 4388 1.328680 CTCCATCGATCACTTTTGCGG 59.671 52.381 0.00 0.00 0.00 5.69
552 4389 2.270923 TCTCCATCGATCACTTTTGCG 58.729 47.619 0.00 0.00 0.00 4.85
553 4390 3.486542 GCTTCTCCATCGATCACTTTTGC 60.487 47.826 0.00 0.00 0.00 3.68
554 4391 3.937706 AGCTTCTCCATCGATCACTTTTG 59.062 43.478 0.00 0.00 0.00 2.44
555 4392 4.187694 GAGCTTCTCCATCGATCACTTTT 58.812 43.478 0.00 0.00 0.00 2.27
556 4393 3.196469 TGAGCTTCTCCATCGATCACTTT 59.804 43.478 0.00 0.00 0.00 2.66
557 4394 2.762887 TGAGCTTCTCCATCGATCACTT 59.237 45.455 0.00 0.00 0.00 3.16
558 4395 2.382882 TGAGCTTCTCCATCGATCACT 58.617 47.619 0.00 0.00 0.00 3.41
559 4396 2.879002 TGAGCTTCTCCATCGATCAC 57.121 50.000 0.00 0.00 0.00 3.06
560 4397 3.893326 TTTGAGCTTCTCCATCGATCA 57.107 42.857 0.00 0.00 0.00 2.92
561 4398 4.187694 ACTTTTGAGCTTCTCCATCGATC 58.812 43.478 0.00 0.00 0.00 3.69
562 4399 4.081198 AGACTTTTGAGCTTCTCCATCGAT 60.081 41.667 0.00 0.00 0.00 3.59
563 4400 3.259374 AGACTTTTGAGCTTCTCCATCGA 59.741 43.478 0.00 0.00 0.00 3.59
564 4401 3.594134 AGACTTTTGAGCTTCTCCATCG 58.406 45.455 0.00 0.00 0.00 3.84
565 4402 3.616379 CGAGACTTTTGAGCTTCTCCATC 59.384 47.826 5.48 0.00 32.38 3.51
566 4403 3.259374 TCGAGACTTTTGAGCTTCTCCAT 59.741 43.478 5.48 0.00 32.38 3.41
567 4404 2.628178 TCGAGACTTTTGAGCTTCTCCA 59.372 45.455 5.48 0.00 32.38 3.86
568 4405 3.249917 CTCGAGACTTTTGAGCTTCTCC 58.750 50.000 6.58 0.00 32.38 3.71
569 4406 3.249917 CCTCGAGACTTTTGAGCTTCTC 58.750 50.000 15.71 1.42 36.17 2.87
570 4407 2.611722 GCCTCGAGACTTTTGAGCTTCT 60.612 50.000 15.71 0.00 36.17 2.85
571 4408 1.729517 GCCTCGAGACTTTTGAGCTTC 59.270 52.381 15.71 0.00 36.17 3.86
572 4409 1.070758 TGCCTCGAGACTTTTGAGCTT 59.929 47.619 15.71 0.00 36.17 3.74
573 4410 0.681733 TGCCTCGAGACTTTTGAGCT 59.318 50.000 15.71 0.00 36.17 4.09
574 4411 1.512926 TTGCCTCGAGACTTTTGAGC 58.487 50.000 15.71 6.54 36.17 4.26
575 4412 3.329386 TCATTGCCTCGAGACTTTTGAG 58.671 45.455 15.71 0.00 37.11 3.02
576 4413 3.401033 TCATTGCCTCGAGACTTTTGA 57.599 42.857 15.71 7.42 0.00 2.69
577 4414 3.499918 ACTTCATTGCCTCGAGACTTTTG 59.500 43.478 15.71 5.08 0.00 2.44
578 4415 3.744660 ACTTCATTGCCTCGAGACTTTT 58.255 40.909 15.71 0.00 0.00 2.27
579 4416 3.409026 ACTTCATTGCCTCGAGACTTT 57.591 42.857 15.71 0.00 0.00 2.66
580 4417 3.764434 TCTACTTCATTGCCTCGAGACTT 59.236 43.478 15.71 0.00 0.00 3.01
581 4418 3.357203 TCTACTTCATTGCCTCGAGACT 58.643 45.455 15.71 0.00 0.00 3.24
582 4419 3.784701 TCTACTTCATTGCCTCGAGAC 57.215 47.619 15.71 1.72 0.00 3.36
583 4420 4.801330 TTTCTACTTCATTGCCTCGAGA 57.199 40.909 15.71 0.00 0.00 4.04
584 4421 5.352569 ACAATTTCTACTTCATTGCCTCGAG 59.647 40.000 5.13 5.13 32.08 4.04
585 4422 5.245531 ACAATTTCTACTTCATTGCCTCGA 58.754 37.500 0.00 0.00 32.08 4.04
586 4423 5.551760 ACAATTTCTACTTCATTGCCTCG 57.448 39.130 0.00 0.00 32.08 4.63
761 4684 4.655963 AGTGTAAGCCATGACATCTGTTT 58.344 39.130 0.00 0.00 0.00 2.83
764 4687 3.806521 GCTAGTGTAAGCCATGACATCTG 59.193 47.826 0.00 0.00 36.45 2.90
833 4777 1.067060 CTGTGAGGAATGCATGCATGG 59.933 52.381 32.79 12.00 36.68 3.66
923 4869 9.936759 ACTACTTCCTTCTAAGAAGAGAATTTG 57.063 33.333 7.47 7.89 42.80 2.32
966 4912 0.467844 TTGGTGCTGGCATTGACAGT 60.468 50.000 20.44 0.00 41.48 3.55
1028 4976 4.381411 AGTGTGTTTCTTCTAGCTTGTCC 58.619 43.478 0.00 0.00 0.00 4.02
1080 5032 2.032528 CACGGCCAGGAGCAAGAA 59.967 61.111 2.24 0.00 46.50 2.52
1292 5250 0.472471 CCTGGCCGTATACATGGGTT 59.528 55.000 3.32 0.00 0.00 4.11
1430 5391 1.201647 TCTGAGTAGCGTTGGTAGCAC 59.798 52.381 0.00 0.00 37.01 4.40
1530 5494 1.066215 CCACATCGTCTGGTTCATGGA 60.066 52.381 0.00 0.00 0.00 3.41
1738 5713 3.894547 AACTTAGCGGTGGTGGCGG 62.895 63.158 0.00 0.00 35.00 6.13
1833 5808 4.885325 ACGTACATTTTGAACAAGGACCTT 59.115 37.500 0.00 0.00 0.00 3.50
1851 5826 5.153513 TGTGAAGATTACCGTACAACGTAC 58.846 41.667 0.00 0.00 40.58 3.67
2034 6097 6.126409 GGGAGAATGAGTTCTTCTCTCTAGA 58.874 44.000 11.57 0.00 43.79 2.43
2078 6141 1.097547 GTGTTCCATGGCCTCATCGG 61.098 60.000 6.96 0.00 0.00 4.18
2095 6158 0.951040 GTCCCTTGCCTGAACTCGTG 60.951 60.000 0.00 0.00 0.00 4.35
2131 6201 3.654173 CTGCCAGCTCGCTGTAGCA 62.654 63.158 16.82 17.27 45.30 3.49
2199 6269 2.579201 CCTCTGTACACTGGGCCG 59.421 66.667 0.00 0.00 0.00 6.13
2235 6305 2.968574 TCTCTTGATAGCCACCTCCATC 59.031 50.000 0.00 0.00 0.00 3.51
2238 6308 2.102252 CACTCTCTTGATAGCCACCTCC 59.898 54.545 0.00 0.00 0.00 4.30
2273 6343 0.542333 GTACTCCTTCCTCCCTTGCC 59.458 60.000 0.00 0.00 0.00 4.52
2277 6347 1.381463 GGCGTACTCCTTCCTCCCT 60.381 63.158 0.00 0.00 0.00 4.20
2368 6438 4.200283 GACCAGGAGGAGCTCGCG 62.200 72.222 7.83 0.00 38.69 5.87
2394 6464 0.108520 CGAGGCTGCCATTTTGCATT 60.109 50.000 22.65 0.00 41.16 3.56
2399 6469 2.019984 GAAGATCGAGGCTGCCATTTT 58.980 47.619 22.65 7.20 0.00 1.82
2400 6470 1.065199 TGAAGATCGAGGCTGCCATTT 60.065 47.619 22.65 0.00 0.00 2.32
2403 6473 1.219124 GTGAAGATCGAGGCTGCCA 59.781 57.895 22.65 0.00 0.00 4.92
2476 6546 8.833231 ATACTTCGAACAATTATACCATCAGG 57.167 34.615 0.00 0.00 42.21 3.86
2509 6625 9.430623 CTCCATCCCAAAATATAAAAACGTTTT 57.569 29.630 20.26 20.26 0.00 2.43
2510 6626 8.038351 CCTCCATCCCAAAATATAAAAACGTTT 58.962 33.333 7.96 7.96 0.00 3.60
2512 6628 6.097696 CCCTCCATCCCAAAATATAAAAACGT 59.902 38.462 0.00 0.00 0.00 3.99
2513 6629 6.322712 TCCCTCCATCCCAAAATATAAAAACG 59.677 38.462 0.00 0.00 0.00 3.60
2514 6630 7.344612 ACTCCCTCCATCCCAAAATATAAAAAC 59.655 37.037 0.00 0.00 0.00 2.43
2518 6634 6.855061 ACTACTCCCTCCATCCCAAAATATAA 59.145 38.462 0.00 0.00 0.00 0.98
2525 6641 2.590611 AGTACTACTCCCTCCATCCCAA 59.409 50.000 0.00 0.00 0.00 4.12
2528 6644 5.246429 CCATTAAGTACTACTCCCTCCATCC 59.754 48.000 0.00 0.00 0.00 3.51
2529 6645 5.839606 ACCATTAAGTACTACTCCCTCCATC 59.160 44.000 0.00 0.00 0.00 3.51
2530 6646 5.789535 ACCATTAAGTACTACTCCCTCCAT 58.210 41.667 0.00 0.00 0.00 3.41
2535 6713 9.939802 CCATAATAACCATTAAGTACTACTCCC 57.060 37.037 0.00 0.00 30.50 4.30
2834 7012 1.982612 CGATCTCAAGCAAGACGACA 58.017 50.000 0.00 0.00 0.00 4.35
3074 9135 2.970639 GCCTCCAGTCGTAGCACA 59.029 61.111 0.00 0.00 0.00 4.57
3256 9324 5.587289 TCTTTTGTACAACATCCAAACTGC 58.413 37.500 8.07 0.00 0.00 4.40
3353 9422 3.921021 ACGAACGATGACTCAAAGATGTC 59.079 43.478 0.14 0.00 0.00 3.06
3393 9462 2.662791 CGCTCATCTTGTTTGTGTTCCG 60.663 50.000 0.00 0.00 0.00 4.30
3408 9477 2.228822 GACCAATGAAAACCACGCTCAT 59.771 45.455 0.00 0.00 0.00 2.90
3412 9482 0.386731 CGGACCAATGAAAACCACGC 60.387 55.000 0.00 0.00 0.00 5.34
3417 9487 3.127030 GTCTGATCCGGACCAATGAAAAC 59.873 47.826 6.12 0.00 33.99 2.43
3442 9512 1.750778 CTTGCACTTGACCCTGTTGTT 59.249 47.619 0.00 0.00 0.00 2.83
3447 9517 0.179020 TGACCTTGCACTTGACCCTG 60.179 55.000 0.00 0.00 0.00 4.45
3448 9518 0.550914 TTGACCTTGCACTTGACCCT 59.449 50.000 0.00 0.00 0.00 4.34
3470 9541 5.823570 TCAAAAGGACGACAAACCAAATCTA 59.176 36.000 0.00 0.00 0.00 1.98
3471 9542 4.642885 TCAAAAGGACGACAAACCAAATCT 59.357 37.500 0.00 0.00 0.00 2.40
3532 9603 4.530875 CATCTTAGGCAGATCCCTTTTGT 58.469 43.478 0.00 0.00 40.67 2.83
3567 9638 2.221055 ACATCTTTGAGCGTTCGTTCAC 59.779 45.455 10.85 0.00 0.00 3.18
3568 9639 2.220824 CACATCTTTGAGCGTTCGTTCA 59.779 45.455 7.58 7.58 0.00 3.18
3571 9642 1.148310 CCACATCTTTGAGCGTTCGT 58.852 50.000 0.00 0.00 0.00 3.85
3572 9643 0.443869 CCCACATCTTTGAGCGTTCG 59.556 55.000 0.00 0.00 0.00 3.95
3584 9655 1.917872 TGCCCAAACTAACCCACATC 58.082 50.000 0.00 0.00 0.00 3.06
3585 9656 1.967779 GTTGCCCAAACTAACCCACAT 59.032 47.619 0.00 0.00 35.75 3.21
3620 9691 9.601217 GTTGAAGCATAGAAGAGGTTAAGATTA 57.399 33.333 0.00 0.00 0.00 1.75
3621 9692 8.103305 TGTTGAAGCATAGAAGAGGTTAAGATT 58.897 33.333 0.00 0.00 0.00 2.40
3625 9696 7.173218 CAGTTGTTGAAGCATAGAAGAGGTTAA 59.827 37.037 0.00 0.00 0.00 2.01
3644 9715 3.321682 CCATTCCCAATGTGACAGTTGTT 59.678 43.478 0.00 0.00 37.18 2.83
3651 9722 0.171007 CGCACCATTCCCAATGTGAC 59.829 55.000 0.00 0.00 37.18 3.67
3701 9773 3.670625 TGTCCTTGTCTTCCGGTTATTG 58.329 45.455 0.00 0.00 0.00 1.90
3702 9774 4.569719 ATGTCCTTGTCTTCCGGTTATT 57.430 40.909 0.00 0.00 0.00 1.40
3726 9801 1.275856 GTGCCTCAAAAATGATGGGCA 59.724 47.619 7.47 7.47 45.81 5.36
3727 9802 1.405933 GGTGCCTCAAAAATGATGGGC 60.406 52.381 0.00 0.00 39.93 5.36
3731 9806 3.091545 ACGATGGTGCCTCAAAAATGAT 58.908 40.909 0.00 0.00 0.00 2.45
3734 9809 1.545582 CCACGATGGTGCCTCAAAAAT 59.454 47.619 1.71 0.00 43.00 1.82
3735 9810 0.958091 CCACGATGGTGCCTCAAAAA 59.042 50.000 1.71 0.00 43.00 1.94
3736 9811 0.109532 TCCACGATGGTGCCTCAAAA 59.890 50.000 1.71 0.00 43.00 2.44
3737 9812 0.109532 TTCCACGATGGTGCCTCAAA 59.890 50.000 1.71 0.00 43.00 2.69
3738 9813 0.109532 TTTCCACGATGGTGCCTCAA 59.890 50.000 1.71 0.00 43.00 3.02
3739 9814 0.109532 TTTTCCACGATGGTGCCTCA 59.890 50.000 1.71 0.00 43.00 3.86
3740 9815 0.804989 CTTTTCCACGATGGTGCCTC 59.195 55.000 1.71 0.00 43.00 4.70
3741 9816 0.110486 ACTTTTCCACGATGGTGCCT 59.890 50.000 1.71 0.00 43.00 4.75
3742 9817 0.958822 AACTTTTCCACGATGGTGCC 59.041 50.000 1.71 0.00 43.00 5.01
3743 9818 1.335872 CCAACTTTTCCACGATGGTGC 60.336 52.381 1.71 0.00 43.00 5.01
3744 9819 2.226330 TCCAACTTTTCCACGATGGTG 58.774 47.619 0.03 0.03 43.99 4.17
3745 9820 2.649531 TCCAACTTTTCCACGATGGT 57.350 45.000 0.00 0.00 39.03 3.55
3746 9821 4.314740 TTTTCCAACTTTTCCACGATGG 57.685 40.909 0.00 0.00 39.43 3.51
3752 9827 6.463755 GCCTCCTTTATTTTCCAACTTTTCCA 60.464 38.462 0.00 0.00 0.00 3.53
3759 9834 5.984695 AAGAGCCTCCTTTATTTTCCAAC 57.015 39.130 0.00 0.00 0.00 3.77
3766 9841 5.831103 TCATTGGAAAGAGCCTCCTTTATT 58.169 37.500 0.00 0.00 36.58 1.40
3784 9859 0.251297 TGGACACCCAAGCCTCATTG 60.251 55.000 0.00 0.00 40.09 2.82
3785 9860 0.482446 TTGGACACCCAAGCCTCATT 59.518 50.000 0.00 0.00 46.94 2.57
3812 9887 3.799366 TGAAGGTGAAGTTCGCTAACAA 58.201 40.909 15.69 0.00 38.12 2.83
3816 9891 2.224185 TGCTTGAAGGTGAAGTTCGCTA 60.224 45.455 15.69 0.00 0.00 4.26
3833 9908 4.669206 TCACAAATTGGTGAATGTGCTT 57.331 36.364 13.47 0.00 44.34 3.91
3841 9916 2.549992 CGAGAGGGTCACAAATTGGTGA 60.550 50.000 11.82 11.82 45.06 4.02
3843 9918 1.697432 TCGAGAGGGTCACAAATTGGT 59.303 47.619 0.00 0.00 0.00 3.67
3883 9958 1.446792 CTCGGCATGAGCGTCAAGT 60.447 57.895 0.00 0.00 43.41 3.16
3902 9977 1.869767 CTATGTGCTTCCAATCTCGGC 59.130 52.381 0.00 0.00 0.00 5.54
3903 9978 3.126831 GTCTATGTGCTTCCAATCTCGG 58.873 50.000 0.00 0.00 0.00 4.63
3904 9979 2.791560 CGTCTATGTGCTTCCAATCTCG 59.208 50.000 0.00 0.00 0.00 4.04
3905 9980 4.046938 TCGTCTATGTGCTTCCAATCTC 57.953 45.455 0.00 0.00 0.00 2.75
3906 9981 4.375272 CATCGTCTATGTGCTTCCAATCT 58.625 43.478 0.00 0.00 0.00 2.40
3907 9982 3.496130 CCATCGTCTATGTGCTTCCAATC 59.504 47.826 0.00 0.00 33.34 2.67
3908 9983 3.470709 CCATCGTCTATGTGCTTCCAAT 58.529 45.455 0.00 0.00 33.34 3.16
3920 9998 2.611971 GCGGATTAATGCCCATCGTCTA 60.612 50.000 0.90 0.00 0.00 2.59
3922 10000 0.517316 GCGGATTAATGCCCATCGTC 59.483 55.000 0.90 0.00 0.00 4.20
3936 10014 1.082117 CGTAAGCGGAAACTGCGGAT 61.082 55.000 0.00 0.00 35.50 4.18
4012 10090 1.451449 TTTACTTTCAGGAGGGCCCA 58.549 50.000 27.56 0.00 37.41 5.36
4013 10091 2.597578 TTTTACTTTCAGGAGGGCCC 57.402 50.000 16.46 16.46 33.31 5.80
4014 10092 6.459710 CGAATAATTTTACTTTCAGGAGGGCC 60.460 42.308 0.00 0.00 0.00 5.80
4015 10093 6.095021 ACGAATAATTTTACTTTCAGGAGGGC 59.905 38.462 0.00 0.00 0.00 5.19
4019 10097 8.852135 ACCAAACGAATAATTTTACTTTCAGGA 58.148 29.630 0.00 0.00 0.00 3.86
4023 10101 8.218441 GCCAACCAAACGAATAATTTTACTTTC 58.782 33.333 0.00 0.00 0.00 2.62
4029 10112 4.962155 TGGCCAACCAAACGAATAATTTT 58.038 34.783 0.61 0.00 45.37 1.82
4065 10148 1.004277 GCCAACCTATCCACAGTCCAA 59.996 52.381 0.00 0.00 0.00 3.53
4066 10149 0.618458 GCCAACCTATCCACAGTCCA 59.382 55.000 0.00 0.00 0.00 4.02
4067 10150 0.107165 GGCCAACCTATCCACAGTCC 60.107 60.000 0.00 0.00 0.00 3.85
4068 10151 0.462047 CGGCCAACCTATCCACAGTC 60.462 60.000 2.24 0.00 0.00 3.51
4069 10152 0.907704 TCGGCCAACCTATCCACAGT 60.908 55.000 2.24 0.00 0.00 3.55
4070 10153 0.179073 CTCGGCCAACCTATCCACAG 60.179 60.000 2.24 0.00 0.00 3.66
4071 10154 1.904771 CTCGGCCAACCTATCCACA 59.095 57.895 2.24 0.00 0.00 4.17
4072 10155 1.523938 GCTCGGCCAACCTATCCAC 60.524 63.158 2.24 0.00 0.00 4.02
4073 10156 2.908015 GCTCGGCCAACCTATCCA 59.092 61.111 2.24 0.00 0.00 3.41
4074 10157 2.280186 CGCTCGGCCAACCTATCC 60.280 66.667 2.24 0.00 0.00 2.59
4075 10158 1.883084 CACGCTCGGCCAACCTATC 60.883 63.158 2.24 0.00 0.00 2.08
4087 10170 1.741770 AATTCGGTCAGCCACGCTC 60.742 57.895 0.00 0.00 36.40 5.03
4092 10175 1.303236 CCCACAATTCGGTCAGCCA 60.303 57.895 0.00 0.00 34.09 4.75
4098 10181 1.665442 GCAAAGCCCACAATTCGGT 59.335 52.632 0.00 0.00 0.00 4.69
4120 10203 0.321034 TCTTGCTCTCGCTTGCACAT 60.321 50.000 0.00 0.00 39.05 3.21
4137 10220 4.718961 AGAAAATATGCGCCCTGTATTCT 58.281 39.130 4.18 5.28 0.00 2.40
4142 10225 2.722094 TGAAGAAAATATGCGCCCTGT 58.278 42.857 4.18 0.00 0.00 4.00
4144 10227 3.129287 CACTTGAAGAAAATATGCGCCCT 59.871 43.478 4.18 0.00 0.00 5.19
4146 10229 4.096732 ACACTTGAAGAAAATATGCGCC 57.903 40.909 4.18 0.00 0.00 6.53
4169 10252 3.202829 TCCAAAGCGGTTTAGTGAAGT 57.797 42.857 12.94 0.00 35.57 3.01
4179 10262 4.224370 TCCTTAACTAAGATCCAAAGCGGT 59.776 41.667 0.00 0.00 35.33 5.68
4181 10264 6.538742 TCAATCCTTAACTAAGATCCAAAGCG 59.461 38.462 0.00 0.00 35.33 4.68
4194 10278 9.442047 CTCACTAAATGAAGTCAATCCTTAACT 57.558 33.333 0.00 0.00 36.69 2.24
4197 10281 7.394016 TGCTCACTAAATGAAGTCAATCCTTA 58.606 34.615 0.00 0.00 36.69 2.69
4198 10282 6.240894 TGCTCACTAAATGAAGTCAATCCTT 58.759 36.000 0.00 0.00 36.69 3.36
4199 10283 5.809001 TGCTCACTAAATGAAGTCAATCCT 58.191 37.500 0.00 0.00 36.69 3.24
4200 10284 6.510799 CGATGCTCACTAAATGAAGTCAATCC 60.511 42.308 0.00 0.00 36.69 3.01
4201 10285 6.256539 TCGATGCTCACTAAATGAAGTCAATC 59.743 38.462 0.00 0.00 36.69 2.67
4202 10286 6.036517 GTCGATGCTCACTAAATGAAGTCAAT 59.963 38.462 0.00 0.00 36.69 2.57
4203 10287 5.348724 GTCGATGCTCACTAAATGAAGTCAA 59.651 40.000 0.00 0.00 36.69 3.18
4204 10288 4.864806 GTCGATGCTCACTAAATGAAGTCA 59.135 41.667 0.00 0.00 36.69 3.41
4205 10289 4.864806 TGTCGATGCTCACTAAATGAAGTC 59.135 41.667 0.00 0.00 36.69 3.01
4206 10290 4.627467 GTGTCGATGCTCACTAAATGAAGT 59.373 41.667 0.00 0.00 36.69 3.01
4207 10291 4.033358 GGTGTCGATGCTCACTAAATGAAG 59.967 45.833 4.18 0.00 36.69 3.02
4231 10315 2.026822 ACCTCTCGAGATGCCAATTGTT 60.027 45.455 17.03 0.00 0.00 2.83
4245 10329 3.998156 TCCTTGACGGACCTCTCG 58.002 61.111 0.00 0.00 36.69 4.04
4268 10352 3.506844 GGAAGAGTTCGACTACTTGACCT 59.493 47.826 2.63 0.00 0.00 3.85
4282 10366 3.709587 TCCTATCGAGGTTGGAAGAGTT 58.290 45.455 0.00 0.00 44.19 3.01
4287 10371 1.485066 GCCTTCCTATCGAGGTTGGAA 59.515 52.381 9.69 9.69 44.19 3.53
4295 10379 4.060038 GAAGTCATTGCCTTCCTATCGA 57.940 45.455 0.00 0.00 33.70 3.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.