Multiple sequence alignment - TraesCS7A01G139000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G139000 chr7A 100.000 3803 0 0 1 3803 91206156 91209958 0.000000e+00 7023.0
1 TraesCS7A01G139000 chrUn 86.502 2393 190 64 860 3180 91449114 91446783 0.000000e+00 2507.0
2 TraesCS7A01G139000 chrUn 91.295 448 31 6 3361 3803 240149639 240149195 4.200000e-169 604.0
3 TraesCS7A01G139000 chrUn 88.032 376 24 6 1 374 91449581 91449225 3.510000e-115 425.0
4 TraesCS7A01G139000 chr7B 92.577 1199 69 12 2046 3239 40582451 40583634 0.000000e+00 1703.0
5 TraesCS7A01G139000 chr7B 85.701 1042 81 30 1018 2024 40581380 40582388 0.000000e+00 1037.0
6 TraesCS7A01G139000 chr3A 94.183 447 23 1 3360 3803 365946099 365945653 0.000000e+00 678.0
7 TraesCS7A01G139000 chr3A 93.778 450 24 2 3358 3803 629694577 629695026 0.000000e+00 673.0
8 TraesCS7A01G139000 chr3A 83.766 154 19 3 27 174 546681005 546681158 1.420000e-29 141.0
9 TraesCS7A01G139000 chr3A 74.618 327 55 21 463 774 99515863 99516176 6.670000e-23 119.0
10 TraesCS7A01G139000 chr3A 83.495 103 13 3 12 114 623031400 623031302 4.040000e-15 93.5
11 TraesCS7A01G139000 chr4D 94.495 436 20 2 3371 3803 20431097 20430663 0.000000e+00 669.0
12 TraesCS7A01G139000 chr4A 93.750 448 23 3 3360 3803 656925056 656924610 0.000000e+00 667.0
13 TraesCS7A01G139000 chr4A 78.947 152 28 4 25 174 546251143 546250994 2.420000e-17 100.0
14 TraesCS7A01G139000 chr4A 87.324 71 5 3 8 75 503624971 503625040 1.130000e-10 78.7
15 TraesCS7A01G139000 chr1D 92.825 446 29 1 3361 3803 356942263 356941818 0.000000e+00 643.0
16 TraesCS7A01G139000 chr1D 84.946 93 14 0 85 177 32226615 32226523 1.120000e-15 95.3
17 TraesCS7A01G139000 chr6B 92.152 446 28 3 3361 3803 297291852 297292293 1.160000e-174 623.0
18 TraesCS7A01G139000 chr6B 91.480 446 30 4 3361 3803 297288061 297288501 1.170000e-169 606.0
19 TraesCS7A01G139000 chr6B 91.480 446 31 3 3361 3803 297295574 297296015 1.170000e-169 606.0
20 TraesCS7A01G139000 chr6B 86.722 482 37 15 937 1405 661520312 661520779 9.420000e-141 510.0
21 TraesCS7A01G139000 chr6B 83.193 357 51 7 2452 2804 661521845 661522196 6.130000e-83 318.0
22 TraesCS7A01G139000 chr6B 77.857 140 25 5 7 143 261661598 261661462 8.760000e-12 82.4
23 TraesCS7A01G139000 chr4B 87.361 269 22 8 1096 1362 653844731 653844989 7.990000e-77 298.0
24 TraesCS7A01G139000 chr6A 86.364 110 15 0 69 178 120124466 120124357 1.860000e-23 121.0
25 TraesCS7A01G139000 chr6A 80.986 142 16 9 46 177 26938909 26938769 6.720000e-18 102.0
26 TraesCS7A01G139000 chr3B 83.193 119 18 2 58 174 695517294 695517176 1.440000e-19 108.0
27 TraesCS7A01G139000 chr1B 82.171 129 20 2 35 160 179048100 179047972 1.440000e-19 108.0
28 TraesCS7A01G139000 chr2B 79.518 166 20 9 18 175 704725929 704725770 5.200000e-19 106.0
29 TraesCS7A01G139000 chr5D 87.500 64 5 2 3254 3316 23210444 23210383 1.900000e-08 71.3
30 TraesCS7A01G139000 chr2A 96.875 32 1 0 509 540 14597682 14597713 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G139000 chr7A 91206156 91209958 3802 False 7023.000000 7023 100.0000 1 3803 1 chr7A.!!$F1 3802
1 TraesCS7A01G139000 chrUn 91446783 91449581 2798 True 1466.000000 2507 87.2670 1 3180 2 chrUn.!!$R2 3179
2 TraesCS7A01G139000 chr7B 40581380 40583634 2254 False 1370.000000 1703 89.1390 1018 3239 2 chr7B.!!$F1 2221
3 TraesCS7A01G139000 chr6B 297288061 297296015 7954 False 611.666667 623 91.7040 3361 3803 3 chr6B.!!$F1 442
4 TraesCS7A01G139000 chr6B 661520312 661522196 1884 False 414.000000 510 84.9575 937 2804 2 chr6B.!!$F2 1867

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
738 741 0.032678 CTGAGAGCGTGTCAAGTGGT 59.967 55.0 0.0 0.0 0.00 4.16 F
1731 1794 0.036388 GCACTGGGAGAAACATCCGA 60.036 55.0 0.0 0.0 40.56 4.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2595 3102 0.178967 TGGAAATTCCCACTGCTGCA 60.179 50.0 9.87 0.88 35.03 4.41 R
3029 3542 0.040067 CAAAGTGCAGCTTCCGTTCC 60.040 55.0 0.00 0.00 36.17 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.274579 GGAAGGAAAAACACGTTTTATTCCA 58.725 36.000 24.51 0.00 44.88 3.53
66 67 1.277842 TGCCTCTCACGGAAGCAAATA 59.722 47.619 0.00 0.00 38.32 1.40
88 89 4.365514 TGTGCCTCCATGAGAAGTAAAA 57.634 40.909 0.00 0.00 0.00 1.52
102 103 3.565905 AGTAAAACCGTACCTCTCACG 57.434 47.619 0.00 0.00 39.10 4.35
110 111 3.293311 CGTACCTCTCACGGAAGAAAA 57.707 47.619 0.00 0.00 35.78 2.29
111 112 3.645884 CGTACCTCTCACGGAAGAAAAA 58.354 45.455 0.00 0.00 35.78 1.94
144 145 1.605712 CCTTTTTCGAGAGGCACGACT 60.606 52.381 0.00 0.00 39.46 4.18
145 146 2.352421 CCTTTTTCGAGAGGCACGACTA 60.352 50.000 0.00 0.00 39.46 2.59
146 147 3.512680 CTTTTTCGAGAGGCACGACTAT 58.487 45.455 0.00 0.00 39.46 2.12
147 148 2.561733 TTTCGAGAGGCACGACTATG 57.438 50.000 0.00 0.00 39.46 2.23
148 149 0.100682 TTCGAGAGGCACGACTATGC 59.899 55.000 0.00 0.00 45.34 3.14
183 184 1.258445 ATCCGTGCCTTTCGAGGACT 61.258 55.000 0.00 0.00 33.37 3.85
217 218 1.818555 GCAAATCCATGCCTCCACC 59.181 57.895 0.00 0.00 40.49 4.61
235 236 3.621715 CCACCTAACTAAATTCGTGCCTC 59.378 47.826 0.00 0.00 0.00 4.70
250 251 0.241213 GCCTCTTGCGGAAGGAAAAC 59.759 55.000 17.16 0.00 42.23 2.43
251 252 1.604604 CCTCTTGCGGAAGGAAAACA 58.395 50.000 17.16 0.00 42.23 2.83
252 253 1.953686 CCTCTTGCGGAAGGAAAACAA 59.046 47.619 17.16 0.00 42.23 2.83
253 254 2.360801 CCTCTTGCGGAAGGAAAACAAA 59.639 45.455 17.16 0.00 42.23 2.83
254 255 3.181480 CCTCTTGCGGAAGGAAAACAAAA 60.181 43.478 17.16 0.00 42.23 2.44
255 256 4.040445 TCTTGCGGAAGGAAAACAAAAG 57.960 40.909 17.16 0.00 42.23 2.27
256 257 3.697045 TCTTGCGGAAGGAAAACAAAAGA 59.303 39.130 17.16 0.00 42.23 2.52
259 260 4.822026 TGCGGAAGGAAAACAAAAGAAAA 58.178 34.783 0.00 0.00 0.00 2.29
301 302 0.097674 GCACAACTATGCCTCTTGCG 59.902 55.000 0.00 0.00 45.60 4.85
324 325 2.902705 GCAAATCCATGCATCCACAT 57.097 45.000 0.00 0.00 45.70 3.21
336 337 3.627123 TGCATCCACATGAAGTAAATCCG 59.373 43.478 0.00 0.00 30.57 4.18
385 388 3.904136 AAATCGAGAGGCAAAACTGTG 57.096 42.857 0.00 0.00 0.00 3.66
386 389 1.160137 ATCGAGAGGCAAAACTGTGC 58.840 50.000 0.00 0.00 44.14 4.57
393 396 2.216203 GCAAAACTGTGCCTTTCGC 58.784 52.632 0.00 0.00 38.66 4.70
404 407 3.559238 TGCCTTTCGCAGAAGAAAATC 57.441 42.857 0.00 0.00 44.64 2.17
405 408 2.228822 TGCCTTTCGCAGAAGAAAATCC 59.771 45.455 0.00 0.00 44.64 3.01
406 409 2.729156 GCCTTTCGCAGAAGAAAATCCG 60.729 50.000 0.00 0.00 45.90 4.18
407 410 2.484264 CCTTTCGCAGAAGAAAATCCGT 59.516 45.455 0.00 0.00 45.90 4.69
408 411 3.482786 CTTTCGCAGAAGAAAATCCGTG 58.517 45.455 0.00 0.00 45.90 4.94
409 412 0.796312 TCGCAGAAGAAAATCCGTGC 59.204 50.000 0.00 0.00 0.00 5.34
410 413 0.179189 CGCAGAAGAAAATCCGTGCC 60.179 55.000 0.00 0.00 0.00 5.01
411 414 1.168714 GCAGAAGAAAATCCGTGCCT 58.831 50.000 0.00 0.00 0.00 4.75
412 415 1.541588 GCAGAAGAAAATCCGTGCCTT 59.458 47.619 0.00 0.00 0.00 4.35
413 416 2.414691 GCAGAAGAAAATCCGTGCCTTC 60.415 50.000 0.00 0.00 34.92 3.46
414 417 2.813754 CAGAAGAAAATCCGTGCCTTCA 59.186 45.455 0.00 0.00 36.59 3.02
415 418 2.814336 AGAAGAAAATCCGTGCCTTCAC 59.186 45.455 0.00 0.00 36.59 3.18
416 419 2.270352 AGAAAATCCGTGCCTTCACA 57.730 45.000 0.00 0.00 43.28 3.58
417 420 2.582052 AGAAAATCCGTGCCTTCACAA 58.418 42.857 0.00 0.00 43.28 3.33
418 421 2.554032 AGAAAATCCGTGCCTTCACAAG 59.446 45.455 0.00 0.00 43.28 3.16
419 422 2.270352 AAATCCGTGCCTTCACAAGA 57.730 45.000 0.00 0.00 43.28 3.02
420 423 2.270352 AATCCGTGCCTTCACAAGAA 57.730 45.000 0.00 0.00 43.28 2.52
433 436 5.721232 CTTCACAAGAAGTAATCCGTACCT 58.279 41.667 0.00 0.00 44.97 3.08
434 437 5.320549 TCACAAGAAGTAATCCGTACCTC 57.679 43.478 0.00 0.00 32.58 3.85
435 438 5.014858 TCACAAGAAGTAATCCGTACCTCT 58.985 41.667 0.00 0.00 35.38 3.69
436 439 5.125097 TCACAAGAAGTAATCCGTACCTCTC 59.875 44.000 0.00 0.00 33.14 3.20
437 440 4.096081 ACAAGAAGTAATCCGTACCTCTCG 59.904 45.833 0.00 0.00 33.14 4.04
438 441 2.617774 AGAAGTAATCCGTACCTCTCGC 59.382 50.000 0.00 0.00 28.86 5.03
439 442 0.942962 AGTAATCCGTACCTCTCGCG 59.057 55.000 0.00 0.00 32.58 5.87
440 443 0.040603 GTAATCCGTACCTCTCGCGG 60.041 60.000 6.13 0.00 46.12 6.46
489 492 2.869233 TTCAAGAGGCACAACTTTGC 57.131 45.000 0.00 0.00 42.18 3.68
498 501 3.708563 GCACAACTTTGCCTCTTACAA 57.291 42.857 0.00 0.00 36.42 2.41
500 503 4.429108 GCACAACTTTGCCTCTTACAAAA 58.571 39.130 0.00 0.00 36.63 2.44
501 504 4.504097 GCACAACTTTGCCTCTTACAAAAG 59.496 41.667 0.00 0.00 36.63 2.27
502 505 4.504097 CACAACTTTGCCTCTTACAAAAGC 59.496 41.667 0.00 0.00 36.63 3.51
503 506 4.159506 ACAACTTTGCCTCTTACAAAAGCA 59.840 37.500 0.00 0.00 36.63 3.91
504 507 5.108517 CAACTTTGCCTCTTACAAAAGCAA 58.891 37.500 0.00 0.00 41.39 3.91
505 508 5.535753 ACTTTGCCTCTTACAAAAGCAAT 57.464 34.783 0.00 0.00 42.51 3.56
506 509 5.917462 ACTTTGCCTCTTACAAAAGCAATT 58.083 33.333 0.00 0.00 42.51 2.32
507 510 6.348498 ACTTTGCCTCTTACAAAAGCAATTT 58.652 32.000 0.00 0.00 42.51 1.82
508 511 6.823182 ACTTTGCCTCTTACAAAAGCAATTTT 59.177 30.769 0.00 0.00 42.51 1.82
509 512 6.601741 TTGCCTCTTACAAAAGCAATTTTG 57.398 33.333 10.95 10.95 44.93 2.44
519 522 5.196825 CAAAAGCAATTTTGTGCCTTTACG 58.803 37.500 5.50 0.00 46.14 3.18
520 523 4.314740 AAGCAATTTTGTGCCTTTACGA 57.685 36.364 0.00 0.00 46.14 3.43
521 524 3.900941 AGCAATTTTGTGCCTTTACGAG 58.099 40.909 0.00 0.00 46.14 4.18
522 525 3.568007 AGCAATTTTGTGCCTTTACGAGA 59.432 39.130 0.00 0.00 46.14 4.04
523 526 4.037446 AGCAATTTTGTGCCTTTACGAGAA 59.963 37.500 0.00 0.00 46.14 2.87
524 527 4.382754 GCAATTTTGTGCCTTTACGAGAAG 59.617 41.667 0.00 0.00 38.66 2.85
525 528 5.519722 CAATTTTGTGCCTTTACGAGAAGT 58.480 37.500 0.00 0.00 0.00 3.01
526 529 6.664515 CAATTTTGTGCCTTTACGAGAAGTA 58.335 36.000 0.00 0.00 0.00 2.24
527 530 6.870971 ATTTTGTGCCTTTACGAGAAGTAA 57.129 33.333 0.00 0.00 43.05 2.24
536 539 4.445452 TTACGAGAAGTAAATCCGTGCT 57.555 40.909 0.00 0.00 41.91 4.40
537 540 3.314541 ACGAGAAGTAAATCCGTGCTT 57.685 42.857 0.00 0.00 31.85 3.91
538 541 3.251571 ACGAGAAGTAAATCCGTGCTTC 58.748 45.455 0.00 0.00 38.01 3.86
539 542 3.056749 ACGAGAAGTAAATCCGTGCTTCT 60.057 43.478 5.40 5.40 46.95 2.85
541 544 3.512680 AGAAGTAAATCCGTGCTTCTCG 58.487 45.455 0.00 0.00 42.56 4.04
542 545 1.641577 AGTAAATCCGTGCTTCTCGC 58.358 50.000 0.00 0.00 39.77 5.03
551 554 2.663279 GTGCTTCTCGCGAAAGAAAA 57.337 45.000 25.12 10.56 43.27 2.29
552 555 2.981875 GTGCTTCTCGCGAAAGAAAAA 58.018 42.857 25.12 10.28 43.27 1.94
578 581 7.945033 AAACGTATTTCTTCATGCAAATTGT 57.055 28.000 0.00 0.00 0.00 2.71
579 582 7.945033 AACGTATTTCTTCATGCAAATTGTT 57.055 28.000 0.00 0.00 0.00 2.83
580 583 7.337150 ACGTATTTCTTCATGCAAATTGTTG 57.663 32.000 0.00 0.00 37.83 3.33
581 584 7.144661 ACGTATTTCTTCATGCAAATTGTTGA 58.855 30.769 0.00 0.00 36.83 3.18
582 585 7.651304 ACGTATTTCTTCATGCAAATTGTTGAA 59.349 29.630 11.12 11.12 36.83 2.69
583 586 8.486383 CGTATTTCTTCATGCAAATTGTTGAAA 58.514 29.630 12.18 1.38 36.83 2.69
606 609 6.918067 AAAATCCCTCCAAAACCTAAGAAG 57.082 37.500 0.00 0.00 0.00 2.85
607 610 5.860648 AATCCCTCCAAAACCTAAGAAGA 57.139 39.130 0.00 0.00 0.00 2.87
608 611 5.860648 ATCCCTCCAAAACCTAAGAAGAA 57.139 39.130 0.00 0.00 0.00 2.52
609 612 4.981812 TCCCTCCAAAACCTAAGAAGAAC 58.018 43.478 0.00 0.00 0.00 3.01
610 613 4.079970 CCCTCCAAAACCTAAGAAGAACC 58.920 47.826 0.00 0.00 0.00 3.62
611 614 3.751698 CCTCCAAAACCTAAGAAGAACCG 59.248 47.826 0.00 0.00 0.00 4.44
612 615 3.746940 TCCAAAACCTAAGAAGAACCGG 58.253 45.455 0.00 0.00 0.00 5.28
613 616 3.391955 TCCAAAACCTAAGAAGAACCGGA 59.608 43.478 9.46 0.00 0.00 5.14
614 617 3.751698 CCAAAACCTAAGAAGAACCGGAG 59.248 47.826 9.46 0.00 0.00 4.63
615 618 4.504340 CCAAAACCTAAGAAGAACCGGAGA 60.504 45.833 9.46 0.00 0.00 3.71
616 619 4.968971 AAACCTAAGAAGAACCGGAGAA 57.031 40.909 9.46 0.00 0.00 2.87
617 620 4.968971 AACCTAAGAAGAACCGGAGAAA 57.031 40.909 9.46 0.00 0.00 2.52
618 621 4.968971 ACCTAAGAAGAACCGGAGAAAA 57.031 40.909 9.46 0.00 0.00 2.29
619 622 5.300411 ACCTAAGAAGAACCGGAGAAAAA 57.700 39.130 9.46 0.00 0.00 1.94
620 623 5.061853 ACCTAAGAAGAACCGGAGAAAAAC 58.938 41.667 9.46 0.00 0.00 2.43
621 624 4.454847 CCTAAGAAGAACCGGAGAAAAACC 59.545 45.833 9.46 0.00 0.00 3.27
630 633 0.796927 GGAGAAAAACCGAAGAGCCG 59.203 55.000 0.00 0.00 0.00 5.52
631 634 1.607251 GGAGAAAAACCGAAGAGCCGA 60.607 52.381 0.00 0.00 0.00 5.54
632 635 2.140717 GAGAAAAACCGAAGAGCCGAA 58.859 47.619 0.00 0.00 0.00 4.30
633 636 2.546789 GAGAAAAACCGAAGAGCCGAAA 59.453 45.455 0.00 0.00 0.00 3.46
634 637 2.946990 AGAAAAACCGAAGAGCCGAAAA 59.053 40.909 0.00 0.00 0.00 2.29
635 638 3.379057 AGAAAAACCGAAGAGCCGAAAAA 59.621 39.130 0.00 0.00 0.00 1.94
636 639 2.768833 AAACCGAAGAGCCGAAAAAC 57.231 45.000 0.00 0.00 0.00 2.43
637 640 0.949397 AACCGAAGAGCCGAAAAACC 59.051 50.000 0.00 0.00 0.00 3.27
638 641 0.887836 ACCGAAGAGCCGAAAAACCC 60.888 55.000 0.00 0.00 0.00 4.11
639 642 1.495951 CGAAGAGCCGAAAAACCCG 59.504 57.895 0.00 0.00 0.00 5.28
640 643 0.947180 CGAAGAGCCGAAAAACCCGA 60.947 55.000 0.00 0.00 0.00 5.14
641 644 1.232119 GAAGAGCCGAAAAACCCGAA 58.768 50.000 0.00 0.00 0.00 4.30
642 645 1.605232 GAAGAGCCGAAAAACCCGAAA 59.395 47.619 0.00 0.00 0.00 3.46
643 646 1.682740 AGAGCCGAAAAACCCGAAAA 58.317 45.000 0.00 0.00 0.00 2.29
644 647 2.025898 AGAGCCGAAAAACCCGAAAAA 58.974 42.857 0.00 0.00 0.00 1.94
645 648 2.121786 GAGCCGAAAAACCCGAAAAAC 58.878 47.619 0.00 0.00 0.00 2.43
646 649 1.202440 AGCCGAAAAACCCGAAAAACC 60.202 47.619 0.00 0.00 0.00 3.27
647 650 1.471153 GCCGAAAAACCCGAAAAACCA 60.471 47.619 0.00 0.00 0.00 3.67
648 651 2.803852 GCCGAAAAACCCGAAAAACCAT 60.804 45.455 0.00 0.00 0.00 3.55
649 652 3.054166 CCGAAAAACCCGAAAAACCATC 58.946 45.455 0.00 0.00 0.00 3.51
650 653 3.243602 CCGAAAAACCCGAAAAACCATCT 60.244 43.478 0.00 0.00 0.00 2.90
651 654 4.023021 CCGAAAAACCCGAAAAACCATCTA 60.023 41.667 0.00 0.00 0.00 1.98
652 655 5.507650 CCGAAAAACCCGAAAAACCATCTAA 60.508 40.000 0.00 0.00 0.00 2.10
653 656 5.978322 CGAAAAACCCGAAAAACCATCTAAA 59.022 36.000 0.00 0.00 0.00 1.85
654 657 6.476053 CGAAAAACCCGAAAAACCATCTAAAA 59.524 34.615 0.00 0.00 0.00 1.52
655 658 7.306341 CGAAAAACCCGAAAAACCATCTAAAAG 60.306 37.037 0.00 0.00 0.00 2.27
656 659 4.514781 ACCCGAAAAACCATCTAAAAGC 57.485 40.909 0.00 0.00 0.00 3.51
657 660 4.149598 ACCCGAAAAACCATCTAAAAGCT 58.850 39.130 0.00 0.00 0.00 3.74
658 661 4.022329 ACCCGAAAAACCATCTAAAAGCTG 60.022 41.667 0.00 0.00 0.00 4.24
659 662 4.217550 CCCGAAAAACCATCTAAAAGCTGA 59.782 41.667 0.00 0.00 0.00 4.26
660 663 5.278758 CCCGAAAAACCATCTAAAAGCTGAA 60.279 40.000 0.00 0.00 0.00 3.02
661 664 6.212955 CCGAAAAACCATCTAAAAGCTGAAA 58.787 36.000 0.00 0.00 0.00 2.69
662 665 6.699642 CCGAAAAACCATCTAAAAGCTGAAAA 59.300 34.615 0.00 0.00 0.00 2.29
663 666 7.384932 CCGAAAAACCATCTAAAAGCTGAAAAT 59.615 33.333 0.00 0.00 0.00 1.82
664 667 8.216453 CGAAAAACCATCTAAAAGCTGAAAATG 58.784 33.333 0.00 0.00 0.00 2.32
665 668 7.425577 AAAACCATCTAAAAGCTGAAAATGC 57.574 32.000 0.00 0.00 0.00 3.56
666 669 5.726980 ACCATCTAAAAGCTGAAAATGCA 57.273 34.783 0.00 0.00 0.00 3.96
667 670 6.290294 ACCATCTAAAAGCTGAAAATGCAT 57.710 33.333 0.00 0.00 0.00 3.96
668 671 7.408756 ACCATCTAAAAGCTGAAAATGCATA 57.591 32.000 0.00 0.00 0.00 3.14
669 672 7.260603 ACCATCTAAAAGCTGAAAATGCATAC 58.739 34.615 0.00 0.00 0.00 2.39
670 673 7.093814 ACCATCTAAAAGCTGAAAATGCATACA 60.094 33.333 0.00 0.07 0.00 2.29
671 674 7.760794 CCATCTAAAAGCTGAAAATGCATACAA 59.239 33.333 0.00 0.00 0.00 2.41
672 675 9.142515 CATCTAAAAGCTGAAAATGCATACAAA 57.857 29.630 0.00 0.00 0.00 2.83
673 676 9.709495 ATCTAAAAGCTGAAAATGCATACAAAA 57.291 25.926 0.00 0.00 0.00 2.44
674 677 9.539825 TCTAAAAGCTGAAAATGCATACAAAAA 57.460 25.926 0.00 0.00 0.00 1.94
700 703 6.954487 AAATAAAATACGGAGGAATCACCC 57.046 37.500 0.00 0.00 40.05 4.61
701 704 5.640158 ATAAAATACGGAGGAATCACCCA 57.360 39.130 0.00 0.00 40.05 4.51
702 705 3.560636 AAATACGGAGGAATCACCCAG 57.439 47.619 0.00 0.00 40.05 4.45
703 706 0.759346 ATACGGAGGAATCACCCAGC 59.241 55.000 0.00 0.00 40.05 4.85
704 707 1.672854 TACGGAGGAATCACCCAGCG 61.673 60.000 0.00 0.00 40.05 5.18
705 708 2.514824 GGAGGAATCACCCAGCGC 60.515 66.667 0.00 0.00 40.05 5.92
706 709 2.892425 GAGGAATCACCCAGCGCG 60.892 66.667 0.00 0.00 40.05 6.86
707 710 3.371097 GAGGAATCACCCAGCGCGA 62.371 63.158 12.10 0.00 40.05 5.87
708 711 3.195698 GGAATCACCCAGCGCGAC 61.196 66.667 12.10 0.04 0.00 5.19
709 712 3.554692 GAATCACCCAGCGCGACG 61.555 66.667 12.10 0.00 0.00 5.12
731 734 4.803426 CGGGGCTGAGAGCGTGTC 62.803 72.222 0.00 0.00 43.62 3.67
732 735 3.695606 GGGGCTGAGAGCGTGTCA 61.696 66.667 0.00 0.00 43.62 3.58
733 736 2.343758 GGGCTGAGAGCGTGTCAA 59.656 61.111 0.00 0.00 43.62 3.18
734 737 1.739562 GGGCTGAGAGCGTGTCAAG 60.740 63.158 0.00 0.00 43.62 3.02
735 738 1.005630 GGCTGAGAGCGTGTCAAGT 60.006 57.895 0.00 0.00 43.62 3.16
736 739 1.287730 GGCTGAGAGCGTGTCAAGTG 61.288 60.000 0.00 0.00 43.62 3.16
737 740 1.287730 GCTGAGAGCGTGTCAAGTGG 61.288 60.000 0.00 0.00 0.00 4.00
738 741 0.032678 CTGAGAGCGTGTCAAGTGGT 59.967 55.000 0.00 0.00 0.00 4.16
739 742 1.269723 CTGAGAGCGTGTCAAGTGGTA 59.730 52.381 0.00 0.00 0.00 3.25
740 743 1.000607 TGAGAGCGTGTCAAGTGGTAC 60.001 52.381 0.00 0.00 0.00 3.34
741 744 0.039437 AGAGCGTGTCAAGTGGTACG 60.039 55.000 0.00 0.00 39.37 3.67
751 754 4.468689 GTGGTACGCTCCCAGCCC 62.469 72.222 0.00 0.00 38.18 5.19
753 756 4.468689 GGTACGCTCCCAGCCCAC 62.469 72.222 0.00 0.00 38.18 4.61
754 757 4.468689 GTACGCTCCCAGCCCACC 62.469 72.222 0.00 0.00 38.18 4.61
758 761 4.299796 GCTCCCAGCCCACCCAAA 62.300 66.667 0.00 0.00 34.48 3.28
759 762 2.036256 CTCCCAGCCCACCCAAAG 59.964 66.667 0.00 0.00 0.00 2.77
760 763 2.780924 TCCCAGCCCACCCAAAGT 60.781 61.111 0.00 0.00 0.00 2.66
761 764 2.601367 CCCAGCCCACCCAAAGTG 60.601 66.667 0.00 0.00 46.83 3.16
769 772 4.599036 ACCCAAAGTGACCCTTGC 57.401 55.556 0.00 0.00 32.32 4.01
770 773 1.528309 ACCCAAAGTGACCCTTGCG 60.528 57.895 0.00 0.00 32.32 4.85
771 774 2.268076 CCCAAAGTGACCCTTGCGG 61.268 63.158 0.00 0.00 32.32 5.69
793 796 2.430546 CTGGTCTATGATCAGCCGAC 57.569 55.000 0.09 7.35 33.88 4.79
794 797 1.959985 CTGGTCTATGATCAGCCGACT 59.040 52.381 16.52 0.00 33.88 4.18
795 798 1.683385 TGGTCTATGATCAGCCGACTG 59.317 52.381 16.52 0.00 45.95 3.51
796 799 1.604185 GGTCTATGATCAGCCGACTGC 60.604 57.143 16.52 3.49 44.10 4.40
805 808 3.579685 GCCGACTGCTCTTTTCCC 58.420 61.111 0.00 0.00 36.87 3.97
806 809 1.003233 GCCGACTGCTCTTTTCCCT 60.003 57.895 0.00 0.00 36.87 4.20
807 810 0.606673 GCCGACTGCTCTTTTCCCTT 60.607 55.000 0.00 0.00 36.87 3.95
808 811 1.338769 GCCGACTGCTCTTTTCCCTTA 60.339 52.381 0.00 0.00 36.87 2.69
809 812 2.681097 GCCGACTGCTCTTTTCCCTTAT 60.681 50.000 0.00 0.00 36.87 1.73
810 813 2.939103 CCGACTGCTCTTTTCCCTTATG 59.061 50.000 0.00 0.00 0.00 1.90
811 814 3.600388 CGACTGCTCTTTTCCCTTATGT 58.400 45.455 0.00 0.00 0.00 2.29
812 815 4.003648 CGACTGCTCTTTTCCCTTATGTT 58.996 43.478 0.00 0.00 0.00 2.71
813 816 5.175859 CGACTGCTCTTTTCCCTTATGTTA 58.824 41.667 0.00 0.00 0.00 2.41
814 817 5.642063 CGACTGCTCTTTTCCCTTATGTTAA 59.358 40.000 0.00 0.00 0.00 2.01
815 818 6.148811 CGACTGCTCTTTTCCCTTATGTTAAA 59.851 38.462 0.00 0.00 0.00 1.52
816 819 7.308348 CGACTGCTCTTTTCCCTTATGTTAAAA 60.308 37.037 0.00 0.00 0.00 1.52
817 820 8.245195 ACTGCTCTTTTCCCTTATGTTAAAAA 57.755 30.769 0.00 0.00 0.00 1.94
840 843 6.731292 AAAAGACTGCTATTTTCCCTTTGT 57.269 33.333 0.00 0.00 0.00 2.83
843 846 6.332735 AGACTGCTATTTTCCCTTTGTTTC 57.667 37.500 0.00 0.00 0.00 2.78
844 847 6.071320 AGACTGCTATTTTCCCTTTGTTTCT 58.929 36.000 0.00 0.00 0.00 2.52
845 848 6.551227 AGACTGCTATTTTCCCTTTGTTTCTT 59.449 34.615 0.00 0.00 0.00 2.52
846 849 6.749139 ACTGCTATTTTCCCTTTGTTTCTTC 58.251 36.000 0.00 0.00 0.00 2.87
847 850 6.551227 ACTGCTATTTTCCCTTTGTTTCTTCT 59.449 34.615 0.00 0.00 0.00 2.85
848 851 7.069950 ACTGCTATTTTCCCTTTGTTTCTTCTT 59.930 33.333 0.00 0.00 0.00 2.52
849 852 7.433680 TGCTATTTTCCCTTTGTTTCTTCTTC 58.566 34.615 0.00 0.00 0.00 2.87
850 853 7.287696 TGCTATTTTCCCTTTGTTTCTTCTTCT 59.712 33.333 0.00 0.00 0.00 2.85
851 854 8.144478 GCTATTTTCCCTTTGTTTCTTCTTCTT 58.856 33.333 0.00 0.00 0.00 2.52
852 855 9.684448 CTATTTTCCCTTTGTTTCTTCTTCTTC 57.316 33.333 0.00 0.00 0.00 2.87
853 856 7.718334 TTTTCCCTTTGTTTCTTCTTCTTCT 57.282 32.000 0.00 0.00 0.00 2.85
854 857 7.718334 TTTCCCTTTGTTTCTTCTTCTTCTT 57.282 32.000 0.00 0.00 0.00 2.52
855 858 6.944234 TCCCTTTGTTTCTTCTTCTTCTTC 57.056 37.500 0.00 0.00 0.00 2.87
856 859 6.663734 TCCCTTTGTTTCTTCTTCTTCTTCT 58.336 36.000 0.00 0.00 0.00 2.85
857 860 7.119387 TCCCTTTGTTTCTTCTTCTTCTTCTT 58.881 34.615 0.00 0.00 0.00 2.52
858 861 7.283354 TCCCTTTGTTTCTTCTTCTTCTTCTTC 59.717 37.037 0.00 0.00 0.00 2.87
973 976 1.134521 CCAACCGCAGCTGTCCTATAA 60.135 52.381 16.64 0.00 0.00 0.98
1053 1059 2.586357 GTTGATCGGAGCCGGAGC 60.586 66.667 5.05 0.00 40.25 4.70
1054 1060 4.207281 TTGATCGGAGCCGGAGCG 62.207 66.667 5.05 0.00 46.67 5.03
1286 1330 3.039526 CCCTCCCTCTCCCCTCCT 61.040 72.222 0.00 0.00 0.00 3.69
1288 1332 2.018086 CCTCCCTCTCCCCTCCTCT 61.018 68.421 0.00 0.00 0.00 3.69
1289 1333 1.598856 CCTCCCTCTCCCCTCCTCTT 61.599 65.000 0.00 0.00 0.00 2.85
1290 1334 0.105709 CTCCCTCTCCCCTCCTCTTC 60.106 65.000 0.00 0.00 0.00 2.87
1292 1336 1.456705 CCTCTCCCCTCCTCTTCCG 60.457 68.421 0.00 0.00 0.00 4.30
1306 1357 2.558554 CTTCCGCGAACGATCCCTGT 62.559 60.000 8.23 0.00 43.93 4.00
1339 1392 2.742116 GGGCGGATCTAGGGTTGCA 61.742 63.158 0.00 0.00 0.00 4.08
1354 1407 1.836999 TTGCATAGGTCGCCTGTGGT 61.837 55.000 18.91 0.00 41.99 4.16
1414 1467 2.288961 TGTCCGATTTCGTTAGAGCC 57.711 50.000 0.00 0.00 37.74 4.70
1462 1515 4.035441 TGCACGTTTACCTTTAGAAACCAC 59.965 41.667 0.00 0.00 32.94 4.16
1464 1517 4.575645 CACGTTTACCTTTAGAAACCACCA 59.424 41.667 0.00 0.00 32.94 4.17
1476 1534 5.762179 AGAAACCACCAGATGTATCTTGA 57.238 39.130 0.51 0.00 34.22 3.02
1527 1585 1.188871 GGTTTGCGGGAAATGGGGAA 61.189 55.000 0.00 0.00 0.00 3.97
1535 1593 2.765699 CGGGAAATGGGGAATGAAATGT 59.234 45.455 0.00 0.00 0.00 2.71
1556 1614 1.069358 CAGGGGAGATTTCGACCTAGC 59.931 57.143 0.00 0.00 32.19 3.42
1612 1671 4.953781 ATTCTTCTTGGAGGAATGGGAA 57.046 40.909 4.51 0.00 37.07 3.97
1621 1680 4.032310 TGGAGGAATGGGAATTGAAATGG 58.968 43.478 0.00 0.00 0.00 3.16
1640 1699 0.526954 GCAGCGGAATTTCATGCCTG 60.527 55.000 8.67 7.93 0.00 4.85
1699 1761 4.422057 TGGGAATTAGACTGGTGACTGTA 58.578 43.478 0.00 0.00 43.17 2.74
1729 1792 1.168714 GTGCACTGGGAGAAACATCC 58.831 55.000 10.32 0.00 38.76 3.51
1730 1793 0.321564 TGCACTGGGAGAAACATCCG 60.322 55.000 0.00 0.00 40.56 4.18
1731 1794 0.036388 GCACTGGGAGAAACATCCGA 60.036 55.000 0.00 0.00 40.56 4.55
1732 1795 1.726853 CACTGGGAGAAACATCCGAC 58.273 55.000 0.00 0.00 40.56 4.79
1733 1796 1.001974 CACTGGGAGAAACATCCGACA 59.998 52.381 0.00 0.00 40.56 4.35
1734 1797 1.276421 ACTGGGAGAAACATCCGACAG 59.724 52.381 0.00 0.00 40.56 3.51
1735 1798 0.036388 TGGGAGAAACATCCGACAGC 60.036 55.000 0.00 0.00 40.56 4.40
1736 1799 0.744771 GGGAGAAACATCCGACAGCC 60.745 60.000 0.00 0.00 40.56 4.85
1741 2152 0.539986 AAACATCCGACAGCCCGTAT 59.460 50.000 0.00 0.00 0.00 3.06
1761 2172 5.516696 CGTATCCTTCGCCATGATATAGTTG 59.483 44.000 0.00 0.00 0.00 3.16
1781 2192 3.461946 GATCAAACTCTTTGGTCTGCG 57.538 47.619 1.44 0.00 45.19 5.18
1826 2251 8.680001 GGTTAATGTACGTTTAGAAAATGGGAT 58.320 33.333 5.48 0.00 0.00 3.85
1852 2277 8.962679 TGTTATATGGGATTTGGTTAACTTGAC 58.037 33.333 5.42 0.00 0.00 3.18
1855 2280 4.798882 TGGGATTTGGTTAACTTGACTGT 58.201 39.130 5.42 0.00 0.00 3.55
1861 2286 4.364415 TGGTTAACTTGACTGTTGTTGC 57.636 40.909 5.42 0.00 0.00 4.17
1874 2299 1.003866 GTTGTTGCGGAACTGACTGTC 60.004 52.381 20.82 0.00 32.79 3.51
1878 2303 0.103390 TGCGGAACTGACTGTCGAAA 59.897 50.000 2.98 0.00 0.00 3.46
1882 2307 1.070289 GGAACTGACTGTCGAAACCCT 59.930 52.381 2.98 0.00 0.00 4.34
1891 2316 1.005394 TCGAAACCCTCTTGGACGC 60.005 57.895 0.00 0.00 38.00 5.19
1895 2320 2.676163 AAACCCTCTTGGACGCGCTT 62.676 55.000 5.73 0.00 38.00 4.68
1898 2323 2.174349 CTCTTGGACGCGCTTTGC 59.826 61.111 5.73 0.00 41.47 3.68
1920 2345 7.290857 TGCGATTATTCTTAACAGAGTTCAC 57.709 36.000 0.00 0.00 0.00 3.18
1921 2346 6.871492 TGCGATTATTCTTAACAGAGTTCACA 59.129 34.615 0.00 0.00 0.00 3.58
1955 2381 3.676093 ACCTTTAGTTGTAGCTTCTGGC 58.324 45.455 0.00 0.00 42.19 4.85
1957 2383 6.031492 AACCTTTAGTTGTAGCTTCTGGCTC 61.031 44.000 0.00 0.00 43.67 4.70
2006 2432 6.712095 TGGATAATCACATCAGCCTAATGTTC 59.288 38.462 0.00 0.00 35.19 3.18
2016 2442 1.468054 GCCTAATGTTCTTGCAAGCCG 60.468 52.381 21.99 0.00 0.00 5.52
2031 2457 3.795150 GCAAGCCGTTCAGTGATTTGAAA 60.795 43.478 0.00 0.00 38.69 2.69
2035 2461 4.984161 AGCCGTTCAGTGATTTGAAATTTG 59.016 37.500 0.00 0.00 38.69 2.32
2039 2465 7.619982 GCCGTTCAGTGATTTGAAATTTGAATC 60.620 37.037 13.29 13.29 38.69 2.52
2068 2534 4.520492 ACCTTTGCACAAGTGGATCTTAAG 59.480 41.667 2.00 0.00 34.66 1.85
2153 2652 1.000171 CTCTTGCTTTGAAGGTTGCCC 60.000 52.381 0.00 0.00 0.00 5.36
2167 2666 2.553247 GGTTGCCCCCTATAGAGCATTC 60.553 54.545 0.00 4.49 34.72 2.67
2169 2668 2.417652 TGCCCCCTATAGAGCATTCAA 58.582 47.619 0.00 0.00 0.00 2.69
2179 2678 7.205297 CCTATAGAGCATTCAATTTGGGTTTG 58.795 38.462 0.00 0.00 0.00 2.93
2182 2681 6.117975 AGAGCATTCAATTTGGGTTTGATT 57.882 33.333 0.00 0.00 33.37 2.57
2198 2697 5.444122 GTTTGATTCTTTGGTCAGAACTCG 58.556 41.667 0.00 0.00 35.57 4.18
2202 2701 2.210116 TCTTTGGTCAGAACTCGCAAC 58.790 47.619 0.00 0.00 0.00 4.17
2203 2702 1.264288 CTTTGGTCAGAACTCGCAACC 59.736 52.381 0.00 0.00 0.00 3.77
2212 2711 3.498397 CAGAACTCGCAACCACAAGTATT 59.502 43.478 0.00 0.00 0.00 1.89
2238 2737 3.766151 TCGTCCTTTCGATGTGTACATC 58.234 45.455 13.63 13.63 46.93 3.06
2376 2882 9.236006 GGATAGCCTATCACAATAATTGACAAT 57.764 33.333 13.51 0.00 36.91 2.71
2517 3024 8.408043 TTGACATTCTTGGTTTATCTTGATGT 57.592 30.769 0.00 0.00 0.00 3.06
2604 3111 4.669318 CTTTCTCCAATATTGCAGCAGTG 58.331 43.478 10.11 0.00 0.00 3.66
2633 3140 8.837099 ATTTCCATGTTCTATAATCCACCAAA 57.163 30.769 0.00 0.00 0.00 3.28
2797 3308 7.545265 TGCAATAAAGCAAATTAACCAGTCATC 59.455 33.333 0.00 0.00 42.46 2.92
2882 3393 7.319646 TGATTTTGCATATTCTTGTGGTAACC 58.680 34.615 0.00 0.00 0.00 2.85
2886 3397 3.632145 GCATATTCTTGTGGTAACCAGGG 59.368 47.826 0.00 0.00 32.34 4.45
2893 3405 1.422402 TGTGGTAACCAGGGGAACTTC 59.578 52.381 0.00 0.00 32.34 3.01
2909 3421 6.887002 GGGGAACTTCTTCACATCTTTTAGAT 59.113 38.462 0.00 0.00 34.74 1.98
2949 3461 3.230134 TGGCCATAAACTGAAAGCTTGT 58.770 40.909 0.00 0.00 37.60 3.16
3012 3524 7.815840 TGTTTCAGATGAAGTATGAACCAAA 57.184 32.000 0.00 0.00 37.75 3.28
3203 3718 1.403679 TCAAACTGGCAGTCAAAACGG 59.596 47.619 22.31 5.77 0.00 4.44
3229 3744 3.354948 TGAGTGGATCAGGGAATGTTG 57.645 47.619 0.00 0.00 32.77 3.33
3232 3747 4.082125 GAGTGGATCAGGGAATGTTGTTT 58.918 43.478 0.00 0.00 0.00 2.83
3233 3748 3.828451 AGTGGATCAGGGAATGTTGTTTG 59.172 43.478 0.00 0.00 0.00 2.93
3234 3749 2.562298 TGGATCAGGGAATGTTGTTTGC 59.438 45.455 0.00 0.00 0.00 3.68
3239 3754 4.836825 TCAGGGAATGTTGTTTGCAAAAA 58.163 34.783 14.67 5.49 36.22 1.94
3240 3755 4.874966 TCAGGGAATGTTGTTTGCAAAAAG 59.125 37.500 14.67 0.00 36.22 2.27
3241 3756 4.035441 CAGGGAATGTTGTTTGCAAAAAGG 59.965 41.667 14.67 0.00 36.22 3.11
3242 3757 3.944650 GGGAATGTTGTTTGCAAAAAGGT 59.055 39.130 14.67 0.00 36.22 3.50
3243 3758 5.104735 AGGGAATGTTGTTTGCAAAAAGGTA 60.105 36.000 14.67 0.00 36.22 3.08
3244 3759 5.586643 GGGAATGTTGTTTGCAAAAAGGTAA 59.413 36.000 14.67 2.03 36.22 2.85
3245 3760 6.094186 GGGAATGTTGTTTGCAAAAAGGTAAA 59.906 34.615 14.67 0.00 36.22 2.01
3246 3761 7.362142 GGGAATGTTGTTTGCAAAAAGGTAAAA 60.362 33.333 14.67 0.57 36.22 1.52
3247 3762 7.483375 GGAATGTTGTTTGCAAAAAGGTAAAAC 59.517 33.333 14.67 3.01 36.22 2.43
3248 3763 6.861065 TGTTGTTTGCAAAAAGGTAAAACA 57.139 29.167 14.67 5.82 38.56 2.83
3249 3764 6.659776 TGTTGTTTGCAAAAAGGTAAAACAC 58.340 32.000 14.67 1.49 39.66 3.32
3250 3765 6.081049 GTTGTTTGCAAAAAGGTAAAACACC 58.919 36.000 14.67 0.00 39.66 4.16
3251 3766 6.293462 GTTGTTTGCAAAAAGGTAAAACACCA 60.293 34.615 14.67 0.00 42.31 4.17
3252 3767 7.732053 GTTGTTTGCAAAAAGGTAAAACACCAA 60.732 33.333 14.67 6.21 42.31 3.67
3263 3778 5.651172 GTAAAACACCAATTTTCAGTGGC 57.349 39.130 0.00 0.00 42.36 5.01
3264 3779 3.902881 AAACACCAATTTTCAGTGGCA 57.097 38.095 0.00 0.00 42.36 4.92
3265 3780 3.902881 AACACCAATTTTCAGTGGCAA 57.097 38.095 0.00 0.00 42.36 4.52
3266 3781 3.457610 ACACCAATTTTCAGTGGCAAG 57.542 42.857 0.00 0.00 42.36 4.01
3267 3782 3.030291 ACACCAATTTTCAGTGGCAAGA 58.970 40.909 0.00 0.00 42.36 3.02
3268 3783 3.642848 ACACCAATTTTCAGTGGCAAGAT 59.357 39.130 0.00 0.00 42.36 2.40
3269 3784 4.832266 ACACCAATTTTCAGTGGCAAGATA 59.168 37.500 0.00 0.00 42.36 1.98
3270 3785 5.163513 CACCAATTTTCAGTGGCAAGATAC 58.836 41.667 0.00 0.00 42.36 2.24
3271 3786 4.220602 ACCAATTTTCAGTGGCAAGATACC 59.779 41.667 0.00 0.00 42.36 2.73
3272 3787 4.381932 CCAATTTTCAGTGGCAAGATACCC 60.382 45.833 0.00 0.00 29.55 3.69
3273 3788 3.806949 TTTTCAGTGGCAAGATACCCT 57.193 42.857 0.00 0.00 0.00 4.34
3274 3789 4.919774 TTTTCAGTGGCAAGATACCCTA 57.080 40.909 0.00 0.00 0.00 3.53
3275 3790 5.450818 TTTTCAGTGGCAAGATACCCTAT 57.549 39.130 0.00 0.00 0.00 2.57
3276 3791 5.450818 TTTCAGTGGCAAGATACCCTATT 57.549 39.130 0.00 0.00 0.00 1.73
3277 3792 5.450818 TTCAGTGGCAAGATACCCTATTT 57.549 39.130 0.00 0.00 0.00 1.40
3278 3793 5.450818 TCAGTGGCAAGATACCCTATTTT 57.549 39.130 0.00 0.00 0.00 1.82
3279 3794 5.826643 TCAGTGGCAAGATACCCTATTTTT 58.173 37.500 0.00 0.00 0.00 1.94
3297 3812 2.442236 TTTGAATCTCAGCCATCCCC 57.558 50.000 0.00 0.00 0.00 4.81
3298 3813 0.552848 TTGAATCTCAGCCATCCCCC 59.447 55.000 0.00 0.00 0.00 5.40
3343 3858 9.944663 TTTATTGATTAACTAATTTAGCGGCTG 57.055 29.630 13.86 0.00 0.00 4.85
3344 3859 7.801716 ATTGATTAACTAATTTAGCGGCTGA 57.198 32.000 13.86 0.14 0.00 4.26
3345 3860 7.801716 TTGATTAACTAATTTAGCGGCTGAT 57.198 32.000 13.86 3.73 0.00 2.90
3346 3861 7.801716 TGATTAACTAATTTAGCGGCTGATT 57.198 32.000 13.86 14.49 0.00 2.57
3347 3862 8.896320 TGATTAACTAATTTAGCGGCTGATTA 57.104 30.769 13.86 14.82 0.00 1.75
3348 3863 9.332502 TGATTAACTAATTTAGCGGCTGATTAA 57.667 29.630 13.86 6.38 0.00 1.40
3349 3864 9.595357 GATTAACTAATTTAGCGGCTGATTAAC 57.405 33.333 13.86 0.00 0.00 2.01
3350 3865 8.726870 TTAACTAATTTAGCGGCTGATTAACT 57.273 30.769 13.86 8.94 0.00 2.24
3351 3866 9.820725 TTAACTAATTTAGCGGCTGATTAACTA 57.179 29.630 13.86 8.13 0.00 2.24
3352 3867 8.726870 AACTAATTTAGCGGCTGATTAACTAA 57.273 30.769 13.86 0.00 0.00 2.24
3353 3868 8.726870 ACTAATTTAGCGGCTGATTAACTAAA 57.273 30.769 13.86 2.64 37.26 1.85
3354 3869 9.169592 ACTAATTTAGCGGCTGATTAACTAAAA 57.830 29.630 13.86 1.87 36.65 1.52
3355 3870 9.997482 CTAATTTAGCGGCTGATTAACTAAAAA 57.003 29.630 13.86 1.10 36.65 1.94
3403 3918 2.901975 GGAAAATCTCCCCTTGCCC 58.098 57.895 0.00 0.00 38.44 5.36
3446 7752 1.301401 CAACCGACGCCTCCTTTCA 60.301 57.895 0.00 0.00 0.00 2.69
3464 7770 1.084370 CAATCTCCTGGAACCGACGC 61.084 60.000 0.00 0.00 0.00 5.19
3466 7772 3.382832 CTCCTGGAACCGACGCCT 61.383 66.667 0.00 0.00 0.00 5.52
3468 7774 4.796231 CCTGGAACCGACGCCTCG 62.796 72.222 0.00 0.00 39.83 4.63
3469 7775 3.744719 CTGGAACCGACGCCTCGA 61.745 66.667 6.68 0.00 43.06 4.04
3470 7776 3.277211 CTGGAACCGACGCCTCGAA 62.277 63.158 6.68 0.00 43.06 3.71
3472 7778 2.506438 GAACCGACGCCTCGAAGG 60.506 66.667 6.68 0.00 43.06 3.46
3473 7779 2.986306 GAACCGACGCCTCGAAGGA 61.986 63.158 6.68 0.00 43.06 3.36
3474 7780 2.280823 GAACCGACGCCTCGAAGGAT 62.281 60.000 6.68 1.09 43.06 3.24
3475 7781 1.885163 AACCGACGCCTCGAAGGATT 61.885 55.000 6.68 0.00 43.06 3.01
3508 7817 3.403322 TCAGGACATATAAAAGGGGGCT 58.597 45.455 0.00 0.00 0.00 5.19
3518 7827 3.837399 AAAAGGGGGCTTGTAACCATA 57.163 42.857 0.00 0.00 0.00 2.74
3519 7828 3.382083 AAAGGGGGCTTGTAACCATAG 57.618 47.619 0.00 0.00 0.00 2.23
3523 7832 2.441750 GGGGGCTTGTAACCATAGATCA 59.558 50.000 0.00 0.00 0.00 2.92
3524 7833 3.117663 GGGGGCTTGTAACCATAGATCAA 60.118 47.826 0.00 0.00 0.00 2.57
3525 7834 4.137543 GGGGCTTGTAACCATAGATCAAG 58.862 47.826 0.00 0.00 38.60 3.02
3571 7880 2.946133 CGTTATCACGCACGTAGAAC 57.054 50.000 0.00 0.11 40.18 3.01
3573 7882 2.275510 CGTTATCACGCACGTAGAACAG 59.724 50.000 0.00 0.00 40.18 3.16
3574 7883 3.240069 GTTATCACGCACGTAGAACAGT 58.760 45.455 0.00 0.00 0.00 3.55
3614 7923 5.362430 GCAATAGAGAAAGGAGAAGAGAGGA 59.638 44.000 0.00 0.00 0.00 3.71
3680 7989 2.198827 TTATGCCTTGTGGACAGTGG 57.801 50.000 0.00 0.00 34.57 4.00
3682 7991 0.538057 ATGCCTTGTGGACAGTGGTG 60.538 55.000 0.00 0.00 34.57 4.17
3738 8047 6.693315 TTCCAAACTCTGAAAAAGACGAAT 57.307 33.333 0.00 0.00 0.00 3.34
3771 8080 1.945394 ACTATCGTTGGACGCGATACT 59.055 47.619 15.93 0.00 45.72 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 7.961325 TGCCTCTTTGAAAATGGAATAAAAC 57.039 32.000 0.87 0.00 0.00 2.43
17 18 7.104939 CCATGCCTCTTTGAAAATGGAATAAA 58.895 34.615 0.35 0.00 37.36 1.40
25 26 2.901839 ACAGCCATGCCTCTTTGAAAAT 59.098 40.909 0.00 0.00 0.00 1.82
54 55 2.017049 GAGGCACATATTTGCTTCCGT 58.983 47.619 13.47 0.00 41.54 4.69
66 67 4.574674 TTTACTTCTCATGGAGGCACAT 57.425 40.909 0.00 0.00 0.00 3.21
77 78 5.382618 GAGAGGTACGGTTTTACTTCTCA 57.617 43.478 14.38 0.00 46.78 3.27
144 145 0.248012 TTGTTTCCGCGAGAGGCATA 59.752 50.000 8.23 0.00 43.84 3.14
145 146 0.605319 TTTGTTTCCGCGAGAGGCAT 60.605 50.000 8.23 0.00 43.84 4.40
146 147 0.605319 ATTTGTTTCCGCGAGAGGCA 60.605 50.000 8.23 3.54 43.84 4.75
147 148 0.097150 GATTTGTTTCCGCGAGAGGC 59.903 55.000 8.23 0.85 38.69 4.70
148 149 0.727398 GGATTTGTTTCCGCGAGAGG 59.273 55.000 8.23 0.00 0.00 3.69
168 169 1.569479 GCACAGTCCTCGAAAGGCAC 61.569 60.000 0.00 0.00 43.02 5.01
183 184 1.761449 TTGCTTTCACAAGAGGCACA 58.239 45.000 0.00 0.00 35.28 4.57
217 218 4.492570 CGCAAGAGGCACGAATTTAGTTAG 60.493 45.833 0.00 0.00 45.17 2.34
235 236 4.040445 TCTTTTGTTTTCCTTCCGCAAG 57.960 40.909 0.00 0.00 0.00 4.01
256 257 7.309194 CCTCTCGGAAATAGGAAAATGTGTTTT 60.309 37.037 0.00 0.00 40.13 2.43
259 260 5.186198 CCTCTCGGAAATAGGAAAATGTGT 58.814 41.667 0.00 0.00 31.64 3.72
270 271 4.693283 CATAGTTGTGCCTCTCGGAAATA 58.307 43.478 0.00 0.00 0.00 1.40
271 272 3.535561 CATAGTTGTGCCTCTCGGAAAT 58.464 45.455 0.00 0.00 0.00 2.17
275 276 2.682893 GCATAGTTGTGCCTCTCGG 58.317 57.895 0.00 0.00 39.18 4.63
301 302 3.192466 GTGGATGCATGGATTTGCTTTC 58.808 45.455 2.46 0.00 43.18 2.62
324 325 3.096852 TGAGAGGCTCGGATTTACTTCA 58.903 45.455 9.22 0.89 32.35 3.02
336 337 1.258445 TTCCCTTCCGTGAGAGGCTC 61.258 60.000 6.34 6.34 0.00 4.70
375 378 2.216203 GCGAAAGGCACAGTTTTGC 58.784 52.632 0.00 0.00 42.87 3.68
385 388 2.729156 CGGATTTTCTTCTGCGAAAGGC 60.729 50.000 0.00 0.00 43.96 4.35
386 389 2.484264 ACGGATTTTCTTCTGCGAAAGG 59.516 45.455 0.00 0.00 34.67 3.11
387 390 3.482786 CACGGATTTTCTTCTGCGAAAG 58.517 45.455 0.00 0.00 34.67 2.62
388 391 2.350388 GCACGGATTTTCTTCTGCGAAA 60.350 45.455 0.00 0.00 0.00 3.46
389 392 1.196808 GCACGGATTTTCTTCTGCGAA 59.803 47.619 0.00 0.00 0.00 4.70
390 393 0.796312 GCACGGATTTTCTTCTGCGA 59.204 50.000 0.00 0.00 0.00 5.10
391 394 0.179189 GGCACGGATTTTCTTCTGCG 60.179 55.000 0.00 0.00 0.00 5.18
392 395 1.168714 AGGCACGGATTTTCTTCTGC 58.831 50.000 0.00 0.00 0.00 4.26
393 396 2.813754 TGAAGGCACGGATTTTCTTCTG 59.186 45.455 0.00 0.00 35.98 3.02
394 397 2.814336 GTGAAGGCACGGATTTTCTTCT 59.186 45.455 0.00 0.00 35.98 2.85
395 398 3.203161 GTGAAGGCACGGATTTTCTTC 57.797 47.619 0.00 0.00 34.94 2.87
410 413 8.102656 GAGAGGTACGGATTACTTCTTGTGAAG 61.103 44.444 4.47 4.47 44.95 3.02
411 414 5.479375 AGAGGTACGGATTACTTCTTGTGAA 59.521 40.000 0.00 0.00 42.98 3.18
412 415 5.014858 AGAGGTACGGATTACTTCTTGTGA 58.985 41.667 0.00 0.00 42.98 3.58
413 416 5.326200 AGAGGTACGGATTACTTCTTGTG 57.674 43.478 0.00 0.00 42.98 3.33
414 417 4.096081 CGAGAGGTACGGATTACTTCTTGT 59.904 45.833 0.00 0.00 44.95 3.16
415 418 4.599047 CGAGAGGTACGGATTACTTCTTG 58.401 47.826 0.00 0.00 44.95 3.02
416 419 3.066481 GCGAGAGGTACGGATTACTTCTT 59.934 47.826 0.00 0.00 44.95 2.52
417 420 2.617774 GCGAGAGGTACGGATTACTTCT 59.382 50.000 0.00 0.00 47.00 2.85
418 421 2.601741 CGCGAGAGGTACGGATTACTTC 60.602 54.545 0.00 0.00 37.11 3.01
419 422 1.332997 CGCGAGAGGTACGGATTACTT 59.667 52.381 0.00 0.00 0.00 2.24
420 423 0.942962 CGCGAGAGGTACGGATTACT 59.057 55.000 0.00 0.00 0.00 2.24
421 424 3.451504 CGCGAGAGGTACGGATTAC 57.548 57.895 0.00 0.00 0.00 1.89
427 430 0.169672 TTTCTTCCGCGAGAGGTACG 59.830 55.000 8.23 0.00 0.00 3.67
428 431 2.358939 TTTTCTTCCGCGAGAGGTAC 57.641 50.000 8.23 0.00 0.00 3.34
470 473 2.869233 GCAAAGTTGTGCCTCTTGAA 57.131 45.000 0.00 0.00 38.66 2.69
478 481 3.708563 TTGTAAGAGGCAAAGTTGTGC 57.291 42.857 0.00 2.54 44.14 4.57
479 482 4.504097 GCTTTTGTAAGAGGCAAAGTTGTG 59.496 41.667 0.00 0.00 37.18 3.33
480 483 4.159506 TGCTTTTGTAAGAGGCAAAGTTGT 59.840 37.500 0.00 0.00 37.18 3.32
481 484 4.681744 TGCTTTTGTAAGAGGCAAAGTTG 58.318 39.130 0.00 0.00 37.18 3.16
482 485 5.337578 TTGCTTTTGTAAGAGGCAAAGTT 57.662 34.783 0.00 0.00 39.45 2.66
483 486 5.535753 ATTGCTTTTGTAAGAGGCAAAGT 57.464 34.783 0.00 0.00 44.21 2.66
485 488 7.014092 CAAAATTGCTTTTGTAAGAGGCAAA 57.986 32.000 0.00 0.00 44.03 3.68
498 501 4.688021 TCGTAAAGGCACAAAATTGCTTT 58.312 34.783 0.00 0.00 43.13 3.51
500 503 3.568007 TCTCGTAAAGGCACAAAATTGCT 59.432 39.130 0.00 0.00 42.56 3.91
501 504 3.896122 TCTCGTAAAGGCACAAAATTGC 58.104 40.909 0.00 0.00 42.18 3.56
502 505 5.519722 ACTTCTCGTAAAGGCACAAAATTG 58.480 37.500 4.93 0.00 0.00 2.32
503 506 5.767816 ACTTCTCGTAAAGGCACAAAATT 57.232 34.783 4.93 0.00 0.00 1.82
504 507 6.870971 TTACTTCTCGTAAAGGCACAAAAT 57.129 33.333 4.93 0.00 35.24 1.82
505 508 6.680874 TTTACTTCTCGTAAAGGCACAAAA 57.319 33.333 4.93 0.00 41.78 2.44
515 518 4.445452 AGCACGGATTTACTTCTCGTAA 57.555 40.909 0.00 0.00 36.34 3.18
516 519 4.157289 AGAAGCACGGATTTACTTCTCGTA 59.843 41.667 0.00 0.00 44.14 3.43
517 520 3.056749 AGAAGCACGGATTTACTTCTCGT 60.057 43.478 0.00 0.00 44.14 4.18
518 521 3.512680 AGAAGCACGGATTTACTTCTCG 58.487 45.455 0.00 0.00 44.14 4.04
521 524 3.909019 CGAGAAGCACGGATTTACTTC 57.091 47.619 0.00 0.00 39.03 3.01
523 526 5.761184 TTCGCGAGAAGCACGGATTTACT 62.761 47.826 9.59 0.00 46.92 2.24
524 527 3.548823 TTCGCGAGAAGCACGGATTTAC 61.549 50.000 9.59 0.00 46.92 2.01
525 528 1.403116 TTCGCGAGAAGCACGGATTTA 60.403 47.619 9.59 0.00 46.92 1.40
526 529 0.669318 TTCGCGAGAAGCACGGATTT 60.669 50.000 9.59 0.00 46.92 2.17
527 530 1.080093 TTCGCGAGAAGCACGGATT 60.080 52.632 9.59 0.00 46.92 3.01
528 531 2.571757 TTCGCGAGAAGCACGGAT 59.428 55.556 9.59 0.00 46.92 4.18
552 555 8.825745 ACAATTTGCATGAAGAAATACGTTTTT 58.174 25.926 3.51 3.51 0.00 1.94
553 556 8.364129 ACAATTTGCATGAAGAAATACGTTTT 57.636 26.923 0.00 0.00 0.00 2.43
554 557 7.945033 ACAATTTGCATGAAGAAATACGTTT 57.055 28.000 0.00 0.00 0.00 3.60
555 558 7.651304 TCAACAATTTGCATGAAGAAATACGTT 59.349 29.630 0.00 2.83 32.17 3.99
556 559 7.144661 TCAACAATTTGCATGAAGAAATACGT 58.855 30.769 0.00 0.00 32.17 3.57
557 560 7.565450 TCAACAATTTGCATGAAGAAATACG 57.435 32.000 0.00 0.00 32.17 3.06
582 585 7.073208 TCTTCTTAGGTTTTGGAGGGATTTTT 58.927 34.615 0.00 0.00 0.00 1.94
583 586 6.620429 TCTTCTTAGGTTTTGGAGGGATTTT 58.380 36.000 0.00 0.00 0.00 1.82
584 587 6.214177 TCTTCTTAGGTTTTGGAGGGATTT 57.786 37.500 0.00 0.00 0.00 2.17
585 588 5.860648 TCTTCTTAGGTTTTGGAGGGATT 57.139 39.130 0.00 0.00 0.00 3.01
586 589 5.516768 GGTTCTTCTTAGGTTTTGGAGGGAT 60.517 44.000 0.00 0.00 0.00 3.85
587 590 4.202535 GGTTCTTCTTAGGTTTTGGAGGGA 60.203 45.833 0.00 0.00 0.00 4.20
588 591 4.079970 GGTTCTTCTTAGGTTTTGGAGGG 58.920 47.826 0.00 0.00 0.00 4.30
589 592 3.751698 CGGTTCTTCTTAGGTTTTGGAGG 59.248 47.826 0.00 0.00 0.00 4.30
590 593 3.751698 CCGGTTCTTCTTAGGTTTTGGAG 59.248 47.826 0.00 0.00 0.00 3.86
591 594 3.391955 TCCGGTTCTTCTTAGGTTTTGGA 59.608 43.478 0.00 0.00 0.00 3.53
592 595 3.746940 TCCGGTTCTTCTTAGGTTTTGG 58.253 45.455 0.00 0.00 0.00 3.28
593 596 4.638304 TCTCCGGTTCTTCTTAGGTTTTG 58.362 43.478 0.00 0.00 0.00 2.44
594 597 4.968971 TCTCCGGTTCTTCTTAGGTTTT 57.031 40.909 0.00 0.00 0.00 2.43
595 598 4.968971 TTCTCCGGTTCTTCTTAGGTTT 57.031 40.909 0.00 0.00 0.00 3.27
596 599 4.968971 TTTCTCCGGTTCTTCTTAGGTT 57.031 40.909 0.00 0.00 0.00 3.50
597 600 4.968971 TTTTCTCCGGTTCTTCTTAGGT 57.031 40.909 0.00 0.00 0.00 3.08
598 601 4.454847 GGTTTTTCTCCGGTTCTTCTTAGG 59.545 45.833 0.00 0.00 0.00 2.69
599 602 4.151867 CGGTTTTTCTCCGGTTCTTCTTAG 59.848 45.833 0.00 0.00 43.68 2.18
600 603 4.060205 CGGTTTTTCTCCGGTTCTTCTTA 58.940 43.478 0.00 0.00 43.68 2.10
601 604 2.876550 CGGTTTTTCTCCGGTTCTTCTT 59.123 45.455 0.00 0.00 43.68 2.52
602 605 2.103601 TCGGTTTTTCTCCGGTTCTTCT 59.896 45.455 0.00 0.00 46.82 2.85
603 606 2.486918 TCGGTTTTTCTCCGGTTCTTC 58.513 47.619 0.00 0.00 46.82 2.87
604 607 2.625695 TCGGTTTTTCTCCGGTTCTT 57.374 45.000 0.00 0.00 46.82 2.52
605 608 2.103601 TCTTCGGTTTTTCTCCGGTTCT 59.896 45.455 0.00 0.00 46.82 3.01
606 609 2.479275 CTCTTCGGTTTTTCTCCGGTTC 59.521 50.000 0.00 0.00 46.82 3.62
607 610 2.490991 CTCTTCGGTTTTTCTCCGGTT 58.509 47.619 0.00 0.00 46.82 4.44
608 611 1.876837 GCTCTTCGGTTTTTCTCCGGT 60.877 52.381 0.00 0.00 46.82 5.28
609 612 0.796927 GCTCTTCGGTTTTTCTCCGG 59.203 55.000 0.00 0.00 46.82 5.14
611 614 0.796927 CGGCTCTTCGGTTTTTCTCC 59.203 55.000 0.00 0.00 0.00 3.71
612 615 1.792006 TCGGCTCTTCGGTTTTTCTC 58.208 50.000 0.00 0.00 0.00 2.87
613 616 2.249844 TTCGGCTCTTCGGTTTTTCT 57.750 45.000 0.00 0.00 0.00 2.52
614 617 3.343380 TTTTCGGCTCTTCGGTTTTTC 57.657 42.857 0.00 0.00 0.00 2.29
615 618 3.441163 GTTTTTCGGCTCTTCGGTTTTT 58.559 40.909 0.00 0.00 0.00 1.94
616 619 2.223641 GGTTTTTCGGCTCTTCGGTTTT 60.224 45.455 0.00 0.00 0.00 2.43
617 620 1.335810 GGTTTTTCGGCTCTTCGGTTT 59.664 47.619 0.00 0.00 0.00 3.27
618 621 0.949397 GGTTTTTCGGCTCTTCGGTT 59.051 50.000 0.00 0.00 0.00 4.44
619 622 0.887836 GGGTTTTTCGGCTCTTCGGT 60.888 55.000 0.00 0.00 0.00 4.69
620 623 1.873863 GGGTTTTTCGGCTCTTCGG 59.126 57.895 0.00 0.00 0.00 4.30
621 624 0.947180 TCGGGTTTTTCGGCTCTTCG 60.947 55.000 0.00 0.00 0.00 3.79
622 625 1.232119 TTCGGGTTTTTCGGCTCTTC 58.768 50.000 0.00 0.00 0.00 2.87
623 626 1.682740 TTTCGGGTTTTTCGGCTCTT 58.317 45.000 0.00 0.00 0.00 2.85
624 627 1.682740 TTTTCGGGTTTTTCGGCTCT 58.317 45.000 0.00 0.00 0.00 4.09
625 628 2.121786 GTTTTTCGGGTTTTTCGGCTC 58.878 47.619 0.00 0.00 0.00 4.70
626 629 1.202440 GGTTTTTCGGGTTTTTCGGCT 60.202 47.619 0.00 0.00 0.00 5.52
627 630 1.210870 GGTTTTTCGGGTTTTTCGGC 58.789 50.000 0.00 0.00 0.00 5.54
628 631 2.580966 TGGTTTTTCGGGTTTTTCGG 57.419 45.000 0.00 0.00 0.00 4.30
629 632 3.972403 AGATGGTTTTTCGGGTTTTTCG 58.028 40.909 0.00 0.00 0.00 3.46
630 633 7.517734 GCTTTTAGATGGTTTTTCGGGTTTTTC 60.518 37.037 0.00 0.00 0.00 2.29
631 634 6.259167 GCTTTTAGATGGTTTTTCGGGTTTTT 59.741 34.615 0.00 0.00 0.00 1.94
632 635 5.756347 GCTTTTAGATGGTTTTTCGGGTTTT 59.244 36.000 0.00 0.00 0.00 2.43
633 636 5.069914 AGCTTTTAGATGGTTTTTCGGGTTT 59.930 36.000 0.00 0.00 0.00 3.27
634 637 4.587262 AGCTTTTAGATGGTTTTTCGGGTT 59.413 37.500 0.00 0.00 0.00 4.11
635 638 4.022329 CAGCTTTTAGATGGTTTTTCGGGT 60.022 41.667 0.00 0.00 0.00 5.28
636 639 4.217550 TCAGCTTTTAGATGGTTTTTCGGG 59.782 41.667 0.00 0.00 31.42 5.14
637 640 5.371115 TCAGCTTTTAGATGGTTTTTCGG 57.629 39.130 0.00 0.00 31.42 4.30
638 641 7.692908 TTTTCAGCTTTTAGATGGTTTTTCG 57.307 32.000 0.00 0.00 31.42 3.46
639 642 8.011673 GCATTTTCAGCTTTTAGATGGTTTTTC 58.988 33.333 0.00 0.00 31.42 2.29
640 643 7.498570 TGCATTTTCAGCTTTTAGATGGTTTTT 59.501 29.630 0.00 0.00 31.42 1.94
641 644 6.991531 TGCATTTTCAGCTTTTAGATGGTTTT 59.008 30.769 0.00 0.00 31.42 2.43
642 645 6.523840 TGCATTTTCAGCTTTTAGATGGTTT 58.476 32.000 0.00 0.00 31.42 3.27
643 646 6.100404 TGCATTTTCAGCTTTTAGATGGTT 57.900 33.333 0.00 0.00 31.42 3.67
644 647 5.726980 TGCATTTTCAGCTTTTAGATGGT 57.273 34.783 0.00 0.00 31.42 3.55
645 648 7.259882 TGTATGCATTTTCAGCTTTTAGATGG 58.740 34.615 3.54 0.00 31.42 3.51
646 649 8.692110 TTGTATGCATTTTCAGCTTTTAGATG 57.308 30.769 3.54 0.00 31.83 2.90
647 650 9.709495 TTTTGTATGCATTTTCAGCTTTTAGAT 57.291 25.926 3.54 0.00 0.00 1.98
648 651 9.539825 TTTTTGTATGCATTTTCAGCTTTTAGA 57.460 25.926 3.54 0.00 0.00 2.10
674 677 9.074576 GGGTGATTCCTCCGTATTTTATTTTAT 57.925 33.333 0.00 0.00 36.25 1.40
675 678 8.053963 TGGGTGATTCCTCCGTATTTTATTTTA 58.946 33.333 0.00 0.00 36.25 1.52
676 679 6.893005 TGGGTGATTCCTCCGTATTTTATTTT 59.107 34.615 0.00 0.00 36.25 1.82
677 680 6.428295 TGGGTGATTCCTCCGTATTTTATTT 58.572 36.000 0.00 0.00 36.25 1.40
678 681 6.008696 TGGGTGATTCCTCCGTATTTTATT 57.991 37.500 0.00 0.00 36.25 1.40
679 682 5.621193 CTGGGTGATTCCTCCGTATTTTAT 58.379 41.667 0.00 0.00 36.25 1.40
680 683 4.685030 GCTGGGTGATTCCTCCGTATTTTA 60.685 45.833 0.00 0.00 36.25 1.52
681 684 3.886123 CTGGGTGATTCCTCCGTATTTT 58.114 45.455 0.00 0.00 36.25 1.82
682 685 2.421529 GCTGGGTGATTCCTCCGTATTT 60.422 50.000 0.00 0.00 36.25 1.40
683 686 1.141053 GCTGGGTGATTCCTCCGTATT 59.859 52.381 0.00 0.00 36.25 1.89
684 687 0.759346 GCTGGGTGATTCCTCCGTAT 59.241 55.000 0.00 0.00 36.25 3.06
685 688 1.672854 CGCTGGGTGATTCCTCCGTA 61.673 60.000 0.00 0.00 36.25 4.02
686 689 2.990479 GCTGGGTGATTCCTCCGT 59.010 61.111 0.00 0.00 36.25 4.69
687 690 2.202932 CGCTGGGTGATTCCTCCG 60.203 66.667 0.00 0.00 36.25 4.63
688 691 2.514824 GCGCTGGGTGATTCCTCC 60.515 66.667 0.00 0.00 36.25 4.30
689 692 2.892425 CGCGCTGGGTGATTCCTC 60.892 66.667 5.56 0.00 36.25 3.71
690 693 3.390521 TCGCGCTGGGTGATTCCT 61.391 61.111 5.56 0.00 36.25 3.36
691 694 3.195698 GTCGCGCTGGGTGATTCC 61.196 66.667 11.22 0.00 37.52 3.01
692 695 3.554692 CGTCGCGCTGGGTGATTC 61.555 66.667 11.22 0.00 37.52 2.52
714 717 4.803426 GACACGCTCTCAGCCCCG 62.803 72.222 0.00 0.00 38.18 5.73
715 718 3.240134 TTGACACGCTCTCAGCCCC 62.240 63.158 0.00 0.00 38.18 5.80
716 719 1.739562 CTTGACACGCTCTCAGCCC 60.740 63.158 0.00 0.00 38.18 5.19
717 720 1.005630 ACTTGACACGCTCTCAGCC 60.006 57.895 0.00 0.00 38.18 4.85
718 721 1.287730 CCACTTGACACGCTCTCAGC 61.288 60.000 0.00 0.00 38.02 4.26
719 722 0.032678 ACCACTTGACACGCTCTCAG 59.967 55.000 0.00 0.00 0.00 3.35
720 723 1.000607 GTACCACTTGACACGCTCTCA 60.001 52.381 0.00 0.00 0.00 3.27
721 724 1.699343 GTACCACTTGACACGCTCTC 58.301 55.000 0.00 0.00 0.00 3.20
722 725 0.039437 CGTACCACTTGACACGCTCT 60.039 55.000 0.00 0.00 0.00 4.09
723 726 2.431539 CGTACCACTTGACACGCTC 58.568 57.895 0.00 0.00 0.00 5.03
724 727 4.647654 CGTACCACTTGACACGCT 57.352 55.556 0.00 0.00 0.00 5.07
726 729 1.007336 GGAGCGTACCACTTGACACG 61.007 60.000 0.00 0.00 37.45 4.49
727 730 0.669625 GGGAGCGTACCACTTGACAC 60.670 60.000 2.85 0.00 0.00 3.67
728 731 1.116536 TGGGAGCGTACCACTTGACA 61.117 55.000 2.85 0.00 31.83 3.58
729 732 0.389948 CTGGGAGCGTACCACTTGAC 60.390 60.000 2.85 0.00 33.63 3.18
730 733 1.972198 CTGGGAGCGTACCACTTGA 59.028 57.895 2.85 0.00 33.63 3.02
731 734 1.741770 GCTGGGAGCGTACCACTTG 60.742 63.158 2.85 0.00 33.63 3.16
732 735 2.663196 GCTGGGAGCGTACCACTT 59.337 61.111 2.85 0.00 33.63 3.16
733 736 3.391382 GGCTGGGAGCGTACCACT 61.391 66.667 2.85 0.00 43.62 4.00
734 737 4.468689 GGGCTGGGAGCGTACCAC 62.469 72.222 2.85 0.00 43.62 4.16
736 739 4.468689 GTGGGCTGGGAGCGTACC 62.469 72.222 0.00 0.00 43.62 3.34
737 740 4.468689 GGTGGGCTGGGAGCGTAC 62.469 72.222 0.00 0.00 43.62 3.67
741 744 4.299796 TTTGGGTGGGCTGGGAGC 62.300 66.667 0.00 0.00 41.46 4.70
742 745 2.036256 CTTTGGGTGGGCTGGGAG 59.964 66.667 0.00 0.00 0.00 4.30
743 746 2.780924 ACTTTGGGTGGGCTGGGA 60.781 61.111 0.00 0.00 0.00 4.37
744 747 2.601367 CACTTTGGGTGGGCTGGG 60.601 66.667 0.00 0.00 41.90 4.45
745 748 1.903404 GTCACTTTGGGTGGGCTGG 60.903 63.158 0.00 0.00 45.38 4.85
746 749 1.903404 GGTCACTTTGGGTGGGCTG 60.903 63.158 0.00 0.00 45.38 4.85
747 750 2.520968 GGTCACTTTGGGTGGGCT 59.479 61.111 0.00 0.00 45.38 5.19
748 751 2.600470 GGGTCACTTTGGGTGGGC 60.600 66.667 0.00 0.00 45.38 5.36
749 752 0.827507 CAAGGGTCACTTTGGGTGGG 60.828 60.000 0.00 0.00 45.38 4.61
750 753 1.463553 GCAAGGGTCACTTTGGGTGG 61.464 60.000 0.00 0.00 45.38 4.61
751 754 1.795170 CGCAAGGGTCACTTTGGGTG 61.795 60.000 0.00 0.00 46.60 4.61
752 755 1.528309 CGCAAGGGTCACTTTGGGT 60.528 57.895 0.00 0.00 37.29 4.51
753 756 3.354678 CGCAAGGGTCACTTTGGG 58.645 61.111 0.00 0.00 37.29 4.12
765 768 1.524621 CATAGACCAGCCCCGCAAG 60.525 63.158 0.00 0.00 0.00 4.01
766 769 1.344953 ATCATAGACCAGCCCCGCAA 61.345 55.000 0.00 0.00 0.00 4.85
767 770 1.758440 GATCATAGACCAGCCCCGCA 61.758 60.000 0.00 0.00 0.00 5.69
768 771 1.004440 GATCATAGACCAGCCCCGC 60.004 63.158 0.00 0.00 0.00 6.13
769 772 0.319728 CTGATCATAGACCAGCCCCG 59.680 60.000 0.00 0.00 0.00 5.73
770 773 0.036022 GCTGATCATAGACCAGCCCC 59.964 60.000 1.83 0.00 45.38 5.80
771 774 3.621953 GCTGATCATAGACCAGCCC 57.378 57.895 1.83 0.00 45.38 5.19
774 777 1.959985 AGTCGGCTGATCATAGACCAG 59.040 52.381 16.67 0.00 32.70 4.00
775 778 1.683385 CAGTCGGCTGATCATAGACCA 59.317 52.381 12.86 0.00 45.28 4.02
776 779 1.604185 GCAGTCGGCTGATCATAGACC 60.604 57.143 23.78 0.00 45.28 3.85
777 780 1.777101 GCAGTCGGCTGATCATAGAC 58.223 55.000 23.78 13.99 45.28 2.59
789 792 2.762535 TAAGGGAAAAGAGCAGTCGG 57.237 50.000 0.00 0.00 0.00 4.79
790 793 3.600388 ACATAAGGGAAAAGAGCAGTCG 58.400 45.455 0.00 0.00 0.00 4.18
792 795 7.833285 TTTTAACATAAGGGAAAAGAGCAGT 57.167 32.000 0.00 0.00 0.00 4.40
816 819 7.124573 ACAAAGGGAAAATAGCAGTCTTTTT 57.875 32.000 0.00 0.00 0.00 1.94
817 820 6.731292 ACAAAGGGAAAATAGCAGTCTTTT 57.269 33.333 0.00 0.00 0.00 2.27
818 821 6.731292 AACAAAGGGAAAATAGCAGTCTTT 57.269 33.333 0.00 0.00 0.00 2.52
819 822 6.551227 AGAAACAAAGGGAAAATAGCAGTCTT 59.449 34.615 0.00 0.00 0.00 3.01
820 823 6.071320 AGAAACAAAGGGAAAATAGCAGTCT 58.929 36.000 0.00 0.00 0.00 3.24
821 824 6.332735 AGAAACAAAGGGAAAATAGCAGTC 57.667 37.500 0.00 0.00 0.00 3.51
822 825 6.551227 AGAAGAAACAAAGGGAAAATAGCAGT 59.449 34.615 0.00 0.00 0.00 4.40
823 826 6.986250 AGAAGAAACAAAGGGAAAATAGCAG 58.014 36.000 0.00 0.00 0.00 4.24
824 827 6.976934 AGAAGAAACAAAGGGAAAATAGCA 57.023 33.333 0.00 0.00 0.00 3.49
825 828 7.661968 AGAAGAAGAAACAAAGGGAAAATAGC 58.338 34.615 0.00 0.00 0.00 2.97
826 829 9.684448 GAAGAAGAAGAAACAAAGGGAAAATAG 57.316 33.333 0.00 0.00 0.00 1.73
827 830 9.421399 AGAAGAAGAAGAAACAAAGGGAAAATA 57.579 29.630 0.00 0.00 0.00 1.40
828 831 8.311395 AGAAGAAGAAGAAACAAAGGGAAAAT 57.689 30.769 0.00 0.00 0.00 1.82
829 832 7.718334 AGAAGAAGAAGAAACAAAGGGAAAA 57.282 32.000 0.00 0.00 0.00 2.29
840 843 9.898152 AAGAAGAAGAAGAAGAAGAAGAAGAAA 57.102 29.630 0.00 0.00 0.00 2.52
843 846 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
844 847 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
845 848 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
846 849 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
847 850 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
848 851 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
849 852 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
850 853 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
851 854 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
852 855 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
853 856 9.898152 AAAGAAGAAGAAGAAGAAGAAGAAGAA 57.102 29.630 0.00 0.00 0.00 2.52
854 857 9.541143 GAAAGAAGAAGAAGAAGAAGAAGAAGA 57.459 33.333 0.00 0.00 0.00 2.87
855 858 9.546428 AGAAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
973 976 1.004200 CACGGCTTAGGGTTCGGTT 60.004 57.895 0.00 0.00 0.00 4.44
1026 1032 1.141881 CCGATCAACCTCAGGACGG 59.858 63.158 0.00 0.45 0.00 4.79
1053 1059 3.277211 TTCTTCCTCGGCGTGGTCG 62.277 63.158 25.30 17.49 40.37 4.79
1054 1060 1.446272 CTTCTTCCTCGGCGTGGTC 60.446 63.158 25.30 0.00 0.00 4.02
1055 1061 2.657237 CTTCTTCCTCGGCGTGGT 59.343 61.111 25.30 0.00 0.00 4.16
1060 1071 0.461163 GCTTCTCCTTCTTCCTCGGC 60.461 60.000 0.00 0.00 0.00 5.54
1286 1330 2.050350 AGGGATCGTTCGCGGAAGA 61.050 57.895 5.24 5.24 41.70 2.87
1288 1332 2.183300 CAGGGATCGTTCGCGGAA 59.817 61.111 6.13 0.00 41.70 4.30
1289 1333 3.066190 ACAGGGATCGTTCGCGGA 61.066 61.111 15.53 0.00 41.70 5.54
1290 1334 2.885644 CACAGGGATCGTTCGCGG 60.886 66.667 6.13 8.70 41.70 6.46
1292 1336 2.577059 TCCACAGGGATCGTTCGC 59.423 61.111 2.48 2.48 38.64 4.70
1339 1392 0.824759 GAGAACCACAGGCGACCTAT 59.175 55.000 0.00 0.00 29.64 2.57
1414 1467 2.224217 ACATCGAATCTGCGCGACG 61.224 57.895 12.10 5.08 39.56 5.12
1434 1487 6.715344 TTCTAAAGGTAAACGTGCACATAG 57.285 37.500 18.64 2.84 0.00 2.23
1462 1515 4.036027 GTGGTGCATTCAAGATACATCTGG 59.964 45.833 0.00 0.00 37.19 3.86
1464 1517 3.873361 CGTGGTGCATTCAAGATACATCT 59.127 43.478 0.00 0.00 39.22 2.90
1476 1534 2.258013 CCGGTCAACGTGGTGCATT 61.258 57.895 0.00 0.00 42.24 3.56
1527 1585 4.080356 TCGAAATCTCCCCTGACATTTCAT 60.080 41.667 0.00 0.00 36.33 2.57
1535 1593 2.667470 CTAGGTCGAAATCTCCCCTGA 58.333 52.381 0.00 0.00 0.00 3.86
1548 1606 2.016318 TGCATTGAATTGGCTAGGTCG 58.984 47.619 0.00 0.00 0.00 4.79
1600 1659 3.181462 GCCATTTCAATTCCCATTCCTCC 60.181 47.826 0.00 0.00 0.00 4.30
1612 1671 3.055963 TGAAATTCCGCTGCCATTTCAAT 60.056 39.130 19.17 0.00 41.67 2.57
1621 1680 0.526954 CAGGCATGAAATTCCGCTGC 60.527 55.000 0.00 4.60 0.00 5.25
1640 1699 3.685756 CCACCAATTGCATTGAATCAACC 59.314 43.478 0.00 0.00 42.83 3.77
1729 1792 1.299165 CGAAGGATACGGGCTGTCG 60.299 63.158 0.06 0.00 46.39 4.35
1730 1793 1.591863 GCGAAGGATACGGGCTGTC 60.592 63.158 0.06 0.00 46.39 3.51
1731 1794 2.499685 GCGAAGGATACGGGCTGT 59.500 61.111 3.57 3.57 46.39 4.40
1732 1795 2.280186 GGCGAAGGATACGGGCTG 60.280 66.667 0.00 0.00 46.39 4.85
1733 1796 2.140792 ATGGCGAAGGATACGGGCT 61.141 57.895 0.00 0.00 46.39 5.19
1734 1797 1.961277 CATGGCGAAGGATACGGGC 60.961 63.158 0.00 0.00 46.39 6.13
1735 1798 0.321671 ATCATGGCGAAGGATACGGG 59.678 55.000 0.00 0.00 46.39 5.28
1736 1799 3.526931 ATATCATGGCGAAGGATACGG 57.473 47.619 0.00 0.00 46.39 4.02
1741 2152 5.245977 TGATCAACTATATCATGGCGAAGGA 59.754 40.000 0.00 0.00 0.00 3.36
1761 2172 2.413371 GCGCAGACCAAAGAGTTTGATC 60.413 50.000 0.30 0.00 43.26 2.92
1826 2251 8.962679 GTCAAGTTAACCAAATCCCATATAACA 58.037 33.333 0.88 0.00 0.00 2.41
1840 2265 3.181505 CGCAACAACAGTCAAGTTAACCA 60.182 43.478 0.88 0.00 0.00 3.67
1852 2277 1.003545 CAGTCAGTTCCGCAACAACAG 60.004 52.381 0.00 0.00 34.60 3.16
1855 2280 1.295792 GACAGTCAGTTCCGCAACAA 58.704 50.000 0.00 0.00 34.60 2.83
1861 2286 1.137513 GGTTTCGACAGTCAGTTCCG 58.862 55.000 0.41 0.00 0.00 4.30
1874 2299 2.380410 CGCGTCCAAGAGGGTTTCG 61.380 63.158 0.00 0.00 38.11 3.46
1878 2303 3.178540 AAAGCGCGTCCAAGAGGGT 62.179 57.895 8.43 0.00 38.11 4.34
1891 2316 5.898606 CTCTGTTAAGAATAATCGCAAAGCG 59.101 40.000 4.83 4.83 42.19 4.68
1895 2320 7.386573 TGTGAACTCTGTTAAGAATAATCGCAA 59.613 33.333 0.00 0.00 30.03 4.85
1898 2323 7.010552 CCCTGTGAACTCTGTTAAGAATAATCG 59.989 40.741 0.00 0.00 30.03 3.34
1899 2324 8.041323 TCCCTGTGAACTCTGTTAAGAATAATC 58.959 37.037 0.00 0.00 30.03 1.75
1900 2325 7.918076 TCCCTGTGAACTCTGTTAAGAATAAT 58.082 34.615 0.00 0.00 30.03 1.28
1909 2334 2.982488 AGGATTCCCTGTGAACTCTGTT 59.018 45.455 0.00 0.00 42.42 3.16
1921 2346 2.649816 ACTAAAGGTTGCAGGATTCCCT 59.350 45.455 0.00 0.00 45.74 4.20
1952 2378 2.767960 TGCTACAGAATCTCATGAGCCA 59.232 45.455 18.36 1.80 0.00 4.75
1955 2381 6.282167 ACAAGATGCTACAGAATCTCATGAG 58.718 40.000 17.07 17.07 39.50 2.90
1957 2383 7.117956 CCATACAAGATGCTACAGAATCTCATG 59.882 40.741 0.00 5.25 39.50 3.07
2006 2432 0.877071 ATCACTGAACGGCTTGCAAG 59.123 50.000 22.44 22.44 0.00 4.01
2035 2461 7.715249 TCCACTTGTGCAAAGGTATATAGATTC 59.285 37.037 11.59 0.00 0.00 2.52
2039 2465 7.220030 AGATCCACTTGTGCAAAGGTATATAG 58.780 38.462 11.59 0.00 0.00 1.31
2043 2469 4.307032 AGATCCACTTGTGCAAAGGTAT 57.693 40.909 11.59 0.00 0.00 2.73
2045 2471 2.664402 AGATCCACTTGTGCAAAGGT 57.336 45.000 11.59 0.00 0.00 3.50
2046 2472 4.616835 GCTTAAGATCCACTTGTGCAAAGG 60.617 45.833 6.67 0.00 39.38 3.11
2047 2473 4.217118 AGCTTAAGATCCACTTGTGCAAAG 59.783 41.667 6.67 0.00 39.38 2.77
2048 2474 4.144297 AGCTTAAGATCCACTTGTGCAAA 58.856 39.130 6.67 0.00 39.38 3.68
2049 2475 3.754965 AGCTTAAGATCCACTTGTGCAA 58.245 40.909 6.67 0.00 39.38 4.08
2050 2476 3.423539 AGCTTAAGATCCACTTGTGCA 57.576 42.857 6.67 0.00 39.38 4.57
2051 2477 4.773323 AAAGCTTAAGATCCACTTGTGC 57.227 40.909 6.67 0.00 39.38 4.57
2052 2478 7.121168 TCCATAAAAGCTTAAGATCCACTTGTG 59.879 37.037 6.67 1.41 39.38 3.33
2053 2479 7.175104 TCCATAAAAGCTTAAGATCCACTTGT 58.825 34.615 6.67 0.00 39.38 3.16
2056 2482 6.603599 GGTTCCATAAAAGCTTAAGATCCACT 59.396 38.462 6.67 0.00 0.00 4.00
2057 2483 6.377146 TGGTTCCATAAAAGCTTAAGATCCAC 59.623 38.462 6.67 0.00 0.00 4.02
2068 2534 6.593382 TGCAAATGTAATGGTTCCATAAAAGC 59.407 34.615 4.67 4.69 0.00 3.51
2118 2617 5.814764 AGCAAGAGCATTTTGATACTCAG 57.185 39.130 0.00 0.00 45.49 3.35
2127 2626 4.677673 ACCTTCAAAGCAAGAGCATTTT 57.322 36.364 0.00 0.00 45.49 1.82
2153 2652 5.388654 ACCCAAATTGAATGCTCTATAGGG 58.611 41.667 0.00 0.00 37.81 3.53
2167 2666 6.054295 TGACCAAAGAATCAAACCCAAATTG 58.946 36.000 0.00 0.00 0.00 2.32
2169 2668 5.602145 TCTGACCAAAGAATCAAACCCAAAT 59.398 36.000 0.00 0.00 0.00 2.32
2179 2678 3.067106 TGCGAGTTCTGACCAAAGAATC 58.933 45.455 0.00 0.00 38.41 2.52
2182 2681 2.210116 GTTGCGAGTTCTGACCAAAGA 58.790 47.619 0.00 0.00 0.00 2.52
2198 2697 3.684788 ACGATCAGAATACTTGTGGTTGC 59.315 43.478 0.00 0.00 0.00 4.17
2202 2701 4.392921 AGGACGATCAGAATACTTGTGG 57.607 45.455 0.00 0.00 0.00 4.17
2203 2702 5.004821 CGAAAGGACGATCAGAATACTTGTG 59.995 44.000 0.00 0.00 35.09 3.33
2238 2737 5.136828 TCCTAGTGCTATGAGAAGAAGGAG 58.863 45.833 0.00 0.00 0.00 3.69
2239 2738 5.130705 TCCTAGTGCTATGAGAAGAAGGA 57.869 43.478 0.00 0.00 0.00 3.36
2517 3024 2.698274 ACCACATCGCATACCTACATGA 59.302 45.455 0.00 0.00 0.00 3.07
2595 3102 0.178967 TGGAAATTCCCACTGCTGCA 60.179 50.000 9.87 0.88 35.03 4.41
2604 3111 7.039714 GGTGGATTATAGAACATGGAAATTCCC 60.040 40.741 9.87 0.00 35.03 3.97
2651 3158 6.936968 AAGGGTACAACTAGAAGTGATTCT 57.063 37.500 0.00 0.00 35.17 2.40
2766 3277 6.989169 TGGTTAATTTGCTTTATTGCACAAGT 59.011 30.769 0.00 0.00 43.20 3.16
2767 3278 7.171337 ACTGGTTAATTTGCTTTATTGCACAAG 59.829 33.333 0.00 0.00 43.20 3.16
2882 3393 3.710209 AGATGTGAAGAAGTTCCCCTG 57.290 47.619 0.00 0.00 0.00 4.45
2909 3421 4.947388 GGCCAAACAGTCCTACAATAATCA 59.053 41.667 0.00 0.00 0.00 2.57
2949 3461 2.525368 TGAAGTGCTAGTGCCTAGTCA 58.475 47.619 9.93 6.66 36.53 3.41
3012 3524 3.611530 CGTTCCGACCATCAAAGCATTTT 60.612 43.478 0.00 0.00 35.03 1.82
3019 3531 1.803334 CTTCCGTTCCGACCATCAAA 58.197 50.000 0.00 0.00 0.00 2.69
3029 3542 0.040067 CAAAGTGCAGCTTCCGTTCC 60.040 55.000 0.00 0.00 36.17 3.62
3030 3543 0.661483 GCAAAGTGCAGCTTCCGTTC 60.661 55.000 0.00 0.00 44.26 3.95
3041 3554 0.597118 TTTGTCATGCCGCAAAGTGC 60.597 50.000 0.00 0.00 40.69 4.40
3203 3718 0.108207 CCCTGATCCACTCATCTGCC 59.892 60.000 0.00 0.00 32.10 4.85
3206 3721 3.391774 ACATTCCCTGATCCACTCATCT 58.608 45.455 0.00 0.00 32.10 2.90
3241 3756 5.112686 TGCCACTGAAAATTGGTGTTTTAC 58.887 37.500 0.00 0.00 35.09 2.01
3242 3757 5.344743 TGCCACTGAAAATTGGTGTTTTA 57.655 34.783 0.00 0.00 35.09 1.52
3243 3758 4.213564 TGCCACTGAAAATTGGTGTTTT 57.786 36.364 0.00 0.00 35.09 2.43
3244 3759 3.902881 TGCCACTGAAAATTGGTGTTT 57.097 38.095 0.00 0.00 35.09 2.83
3245 3760 3.450457 TCTTGCCACTGAAAATTGGTGTT 59.550 39.130 0.00 0.00 35.09 3.32
3246 3761 3.030291 TCTTGCCACTGAAAATTGGTGT 58.970 40.909 0.00 0.00 35.09 4.16
3247 3762 3.731652 TCTTGCCACTGAAAATTGGTG 57.268 42.857 0.00 0.00 35.09 4.17
3248 3763 4.220602 GGTATCTTGCCACTGAAAATTGGT 59.779 41.667 0.00 0.00 35.09 3.67
3249 3764 4.381932 GGGTATCTTGCCACTGAAAATTGG 60.382 45.833 0.00 0.00 35.81 3.16
3250 3765 4.463891 AGGGTATCTTGCCACTGAAAATTG 59.536 41.667 0.00 0.00 0.00 2.32
3251 3766 4.677182 AGGGTATCTTGCCACTGAAAATT 58.323 39.130 0.00 0.00 0.00 1.82
3252 3767 4.322057 AGGGTATCTTGCCACTGAAAAT 57.678 40.909 0.00 0.00 0.00 1.82
3253 3768 3.806949 AGGGTATCTTGCCACTGAAAA 57.193 42.857 0.00 0.00 0.00 2.29
3254 3769 5.450818 AATAGGGTATCTTGCCACTGAAA 57.549 39.130 0.00 0.00 0.00 2.69
3255 3770 5.450818 AAATAGGGTATCTTGCCACTGAA 57.549 39.130 0.00 0.00 0.00 3.02
3256 3771 5.450818 AAAATAGGGTATCTTGCCACTGA 57.549 39.130 0.00 0.00 0.00 3.41
3276 3791 3.099141 GGGGATGGCTGAGATTCAAAAA 58.901 45.455 0.00 0.00 0.00 1.94
3277 3792 2.624029 GGGGGATGGCTGAGATTCAAAA 60.624 50.000 0.00 0.00 0.00 2.44
3278 3793 1.063717 GGGGGATGGCTGAGATTCAAA 60.064 52.381 0.00 0.00 0.00 2.69
3279 3794 0.552848 GGGGGATGGCTGAGATTCAA 59.447 55.000 0.00 0.00 0.00 2.69
3280 3795 2.234586 GGGGGATGGCTGAGATTCA 58.765 57.895 0.00 0.00 0.00 2.57
3317 3832 9.944663 CAGCCGCTAAATTAGTTAATCAATAAA 57.055 29.630 1.68 0.00 0.00 1.40
3318 3833 9.332502 TCAGCCGCTAAATTAGTTAATCAATAA 57.667 29.630 1.68 0.00 0.00 1.40
3319 3834 8.896320 TCAGCCGCTAAATTAGTTAATCAATA 57.104 30.769 1.68 0.00 0.00 1.90
3320 3835 7.801716 TCAGCCGCTAAATTAGTTAATCAAT 57.198 32.000 1.68 0.00 0.00 2.57
3321 3836 7.801716 ATCAGCCGCTAAATTAGTTAATCAA 57.198 32.000 1.68 0.00 0.00 2.57
3322 3837 7.801716 AATCAGCCGCTAAATTAGTTAATCA 57.198 32.000 1.68 0.00 0.00 2.57
3323 3838 9.595357 GTTAATCAGCCGCTAAATTAGTTAATC 57.405 33.333 1.68 0.00 0.00 1.75
3324 3839 9.338622 AGTTAATCAGCCGCTAAATTAGTTAAT 57.661 29.630 1.68 0.00 0.00 1.40
3325 3840 8.726870 AGTTAATCAGCCGCTAAATTAGTTAA 57.273 30.769 1.68 0.00 0.00 2.01
3326 3841 9.820725 TTAGTTAATCAGCCGCTAAATTAGTTA 57.179 29.630 1.68 0.00 0.00 2.24
3327 3842 8.726870 TTAGTTAATCAGCCGCTAAATTAGTT 57.273 30.769 1.68 0.00 0.00 2.24
3328 3843 8.726870 TTTAGTTAATCAGCCGCTAAATTAGT 57.273 30.769 1.68 0.00 29.87 2.24
3329 3844 9.997482 TTTTTAGTTAATCAGCCGCTAAATTAG 57.003 29.630 0.00 0.00 33.45 1.73
3387 3902 1.977854 GTTTGGGCAAGGGGAGATTTT 59.022 47.619 0.00 0.00 0.00 1.82
3442 7748 2.611971 CGTCGGTTCCAGGAGATTGAAA 60.612 50.000 0.00 0.00 0.00 2.69
3446 7752 1.218316 GCGTCGGTTCCAGGAGATT 59.782 57.895 0.00 0.00 0.00 2.40
3464 7770 1.202582 AGACACGACAATCCTTCGAGG 59.797 52.381 0.00 0.00 39.83 4.63
3466 7772 2.160205 AGAGACACGACAATCCTTCGA 58.840 47.619 0.00 0.00 39.83 3.71
3468 7774 3.914312 TGAAGAGACACGACAATCCTTC 58.086 45.455 0.00 0.00 0.00 3.46
3469 7775 3.306364 CCTGAAGAGACACGACAATCCTT 60.306 47.826 0.00 0.00 0.00 3.36
3470 7776 2.232452 CCTGAAGAGACACGACAATCCT 59.768 50.000 0.00 0.00 0.00 3.24
3472 7778 3.246619 GTCCTGAAGAGACACGACAATC 58.753 50.000 0.00 0.00 34.27 2.67
3473 7779 2.628178 TGTCCTGAAGAGACACGACAAT 59.372 45.455 0.00 0.00 39.29 2.71
3474 7780 2.028876 TGTCCTGAAGAGACACGACAA 58.971 47.619 0.00 0.00 39.29 3.18
3475 7781 1.687563 TGTCCTGAAGAGACACGACA 58.312 50.000 0.00 0.00 39.29 4.35
3508 7817 8.007405 TCGAATCTCTTGATCTATGGTTACAA 57.993 34.615 0.00 0.00 31.51 2.41
3518 7827 7.287512 TCAGAATGATCGAATCTCTTGATCT 57.712 36.000 0.00 0.00 42.56 2.75
3570 7879 1.506493 CTTTTGCTCTCGCTGACTGT 58.494 50.000 0.00 0.00 36.97 3.55
3571 7880 0.795085 CCTTTTGCTCTCGCTGACTG 59.205 55.000 0.00 0.00 36.97 3.51
3573 7882 1.230635 TGCCTTTTGCTCTCGCTGAC 61.231 55.000 0.00 0.00 42.00 3.51
3574 7883 0.534877 TTGCCTTTTGCTCTCGCTGA 60.535 50.000 0.00 0.00 42.00 4.26
3585 7894 6.784031 TCTTCTCCTTTCTCTATTGCCTTTT 58.216 36.000 0.00 0.00 0.00 2.27
3594 7903 4.953579 GCTTCCTCTCTTCTCCTTTCTCTA 59.046 45.833 0.00 0.00 0.00 2.43
3596 7905 3.513515 TGCTTCCTCTCTTCTCCTTTCTC 59.486 47.826 0.00 0.00 0.00 2.87
3600 7909 2.831526 GAGTGCTTCCTCTCTTCTCCTT 59.168 50.000 0.00 0.00 0.00 3.36
3642 7951 6.173339 GCATAATTCCTCTTCCATCGGATTA 58.827 40.000 0.00 0.00 0.00 1.75
3647 7956 4.013267 AGGCATAATTCCTCTTCCATCG 57.987 45.455 0.00 0.00 0.00 3.84
3680 7989 2.744202 CTCAGTATGGAGTTTGTGGCAC 59.256 50.000 11.55 11.55 36.16 5.01
3682 7991 2.359900 CCTCAGTATGGAGTTTGTGGC 58.640 52.381 0.00 0.00 36.16 5.01
3771 8080 2.103432 ACGTCCAGTACCAACAATCACA 59.897 45.455 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.