Multiple sequence alignment - TraesCS7A01G138800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G138800 chr7A 100.000 3429 0 0 1 3429 91018394 91014966 0.000000e+00 6333.0
1 TraesCS7A01G138800 chr7A 87.368 1417 126 38 1169 2560 90664986 90663598 0.000000e+00 1576.0
2 TraesCS7A01G138800 chr7A 90.977 1075 80 9 1124 2186 90586495 90587564 0.000000e+00 1432.0
3 TraesCS7A01G138800 chr7A 87.141 731 70 15 2 720 105928766 105928048 0.000000e+00 808.0
4 TraesCS7A01G138800 chr7A 86.892 740 69 13 1 720 104780667 104779936 0.000000e+00 804.0
5 TraesCS7A01G138800 chr7A 86.382 727 83 10 1 720 104498536 104497819 0.000000e+00 780.0
6 TraesCS7A01G138800 chr7A 82.669 727 85 26 1 720 103997506 103996814 1.050000e-169 606.0
7 TraesCS7A01G138800 chr7D 90.036 1957 146 28 1124 3060 89791420 89789493 0.000000e+00 2488.0
8 TraesCS7A01G138800 chr7D 87.413 1732 135 42 840 2542 89731975 89730298 0.000000e+00 1914.0
9 TraesCS7A01G138800 chr7D 90.107 1122 90 17 1124 2233 89522293 89523405 0.000000e+00 1437.0
10 TraesCS7A01G138800 chr7D 87.620 1252 119 24 947 2186 89486267 89487494 0.000000e+00 1421.0
11 TraesCS7A01G138800 chr7D 88.971 680 58 14 45 720 101391672 101391006 0.000000e+00 824.0
12 TraesCS7A01G138800 chr7D 84.252 254 38 2 3069 3322 575145670 575145419 2.640000e-61 246.0
13 TraesCS7A01G138800 chr7D 92.784 97 6 1 840 936 89736015 89735920 4.610000e-29 139.0
14 TraesCS7A01G138800 chr7D 96.923 65 2 0 1 65 101391738 101391674 3.620000e-20 110.0
15 TraesCS7A01G138800 chrUn 88.829 1844 135 21 1001 2811 91490347 91492152 0.000000e+00 2198.0
16 TraesCS7A01G138800 chrUn 92.654 1021 51 13 1 1004 91485506 91486519 0.000000e+00 1448.0
17 TraesCS7A01G138800 chrUn 88.462 364 29 8 3072 3429 70572119 70571763 8.790000e-116 427.0
18 TraesCS7A01G138800 chr7B 89.095 1513 136 17 1012 2509 40576546 40575048 0.000000e+00 1853.0
19 TraesCS7A01G138800 chr7B 86.525 1462 151 31 1124 2560 40443744 40442304 0.000000e+00 1567.0
20 TraesCS7A01G138800 chr7B 87.500 744 63 12 1 720 58242605 58241868 0.000000e+00 832.0
21 TraesCS7A01G138800 chr7B 85.141 673 65 21 1974 2634 40558196 40557547 0.000000e+00 656.0
22 TraesCS7A01G138800 chr7B 85.945 619 62 20 1 595 57912300 57911683 3.730000e-179 638.0
23 TraesCS7A01G138800 chr7B 90.254 472 31 10 2621 3078 40574820 40574350 1.360000e-168 603.0
24 TraesCS7A01G138800 chr7B 98.182 55 1 0 934 988 40576769 40576715 2.820000e-16 97.1
25 TraesCS7A01G138800 chr5B 93.646 362 15 6 3070 3426 88861486 88861844 5.040000e-148 534.0
26 TraesCS7A01G138800 chr5D 84.921 252 35 3 3072 3322 456594113 456594362 5.680000e-63 252.0
27 TraesCS7A01G138800 chr5D 83.462 260 40 3 3064 3322 443905925 443905668 4.420000e-59 239.0
28 TraesCS7A01G138800 chr5D 81.469 286 42 11 3072 3352 530409334 530409055 1.240000e-54 224.0
29 TraesCS7A01G138800 chr5D 81.159 276 43 9 3072 3342 406475759 406476030 2.680000e-51 213.0
30 TraesCS7A01G138800 chr2D 83.730 252 33 7 3072 3319 8972386 8972139 7.400000e-57 231.0
31 TraesCS7A01G138800 chr3D 80.511 313 48 10 3071 3377 92363610 92363305 9.570000e-56 228.0
32 TraesCS7A01G138800 chr2A 84.568 162 25 0 380 541 741020877 741021038 9.850000e-36 161.0
33 TraesCS7A01G138800 chr2B 81.421 183 32 2 360 541 743203450 743203631 7.670000e-32 148.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G138800 chr7A 91014966 91018394 3428 True 6333.000000 6333 100.000000 1 3429 1 chr7A.!!$R2 3428
1 TraesCS7A01G138800 chr7A 90663598 90664986 1388 True 1576.000000 1576 87.368000 1169 2560 1 chr7A.!!$R1 1391
2 TraesCS7A01G138800 chr7A 90586495 90587564 1069 False 1432.000000 1432 90.977000 1124 2186 1 chr7A.!!$F1 1062
3 TraesCS7A01G138800 chr7A 105928048 105928766 718 True 808.000000 808 87.141000 2 720 1 chr7A.!!$R6 718
4 TraesCS7A01G138800 chr7A 104779936 104780667 731 True 804.000000 804 86.892000 1 720 1 chr7A.!!$R5 719
5 TraesCS7A01G138800 chr7A 104497819 104498536 717 True 780.000000 780 86.382000 1 720 1 chr7A.!!$R4 719
6 TraesCS7A01G138800 chr7A 103996814 103997506 692 True 606.000000 606 82.669000 1 720 1 chr7A.!!$R3 719
7 TraesCS7A01G138800 chr7D 89789493 89791420 1927 True 2488.000000 2488 90.036000 1124 3060 1 chr7D.!!$R1 1936
8 TraesCS7A01G138800 chr7D 89522293 89523405 1112 False 1437.000000 1437 90.107000 1124 2233 1 chr7D.!!$F2 1109
9 TraesCS7A01G138800 chr7D 89486267 89487494 1227 False 1421.000000 1421 87.620000 947 2186 1 chr7D.!!$F1 1239
10 TraesCS7A01G138800 chr7D 89730298 89736015 5717 True 1026.500000 1914 90.098500 840 2542 2 chr7D.!!$R3 1702
11 TraesCS7A01G138800 chr7D 101391006 101391738 732 True 467.000000 824 92.947000 1 720 2 chr7D.!!$R4 719
12 TraesCS7A01G138800 chrUn 91485506 91492152 6646 False 1823.000000 2198 90.741500 1 2811 2 chrUn.!!$F1 2810
13 TraesCS7A01G138800 chr7B 40442304 40443744 1440 True 1567.000000 1567 86.525000 1124 2560 1 chr7B.!!$R1 1436
14 TraesCS7A01G138800 chr7B 40574350 40576769 2419 True 851.033333 1853 92.510333 934 3078 3 chr7B.!!$R5 2144
15 TraesCS7A01G138800 chr7B 58241868 58242605 737 True 832.000000 832 87.500000 1 720 1 chr7B.!!$R4 719
16 TraesCS7A01G138800 chr7B 40557547 40558196 649 True 656.000000 656 85.141000 1974 2634 1 chr7B.!!$R2 660
17 TraesCS7A01G138800 chr7B 57911683 57912300 617 True 638.000000 638 85.945000 1 595 1 chr7B.!!$R3 594

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
652 795 0.321122 GCCCTATCCAATCTCCTGCG 60.321 60.0 0.0 0.0 0.0 5.18 F
1024 8076 0.035458 AGAAGAGAGGCACCAAACGG 59.965 55.0 0.0 0.0 0.0 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1767 8850 0.397564 TGATGTCAGCTTGGAGCACA 59.602 50.0 2.47 0.0 45.56 4.57 R
2834 10143 0.826062 GGCCATTGATTGGGACCAAG 59.174 55.0 9.90 0.0 46.55 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 103 4.641645 CTTGGTGGCGGAGGTGCA 62.642 66.667 0.00 0.00 36.28 4.57
118 141 4.430765 CCGTGTTCCCGTCCTCCG 62.431 72.222 0.00 0.00 0.00 4.63
338 418 2.741517 CTCACACACACACACACAAAGA 59.258 45.455 0.00 0.00 0.00 2.52
342 422 2.225255 CACACACACACACAAAGACACA 59.775 45.455 0.00 0.00 0.00 3.72
375 508 4.398988 ACACACACAAAGACACATGTTCAT 59.601 37.500 0.00 0.00 0.00 2.57
389 522 5.117440 CACATGTTCATTACACACACAATGC 59.883 40.000 0.00 0.00 40.19 3.56
448 581 1.070914 TGCCAACGTGGACATAGTGAA 59.929 47.619 8.04 0.00 40.96 3.18
620 758 7.117956 TGTTTATCAATTTGATTGGTCGTACGA 59.882 33.333 15.28 15.28 38.26 3.43
623 761 4.992319 TCAATTTGATTGGTCGTACGACTT 59.008 37.500 38.47 26.64 44.04 3.01
652 795 0.321122 GCCCTATCCAATCTCCTGCG 60.321 60.000 0.00 0.00 0.00 5.18
666 810 0.804989 CCTGCGGAGACATGGTTTTC 59.195 55.000 5.10 0.00 0.00 2.29
672 816 3.120165 GCGGAGACATGGTTTTCTTCTTC 60.120 47.826 0.00 0.00 0.00 2.87
749 894 2.301346 CCAGGACATTAGCATCCCAAC 58.699 52.381 0.00 0.00 35.38 3.77
751 896 3.136443 CCAGGACATTAGCATCCCAACTA 59.864 47.826 0.00 0.00 35.38 2.24
771 916 8.889717 CCAACTATAACATGAGTAACCGAAAAT 58.110 33.333 0.00 0.00 0.00 1.82
843 988 7.925703 ATGTATTTCAATACGTACTTCGGAG 57.074 36.000 0.00 0.00 43.24 4.63
852 4054 4.363991 ACGTACTTCGGAGGGAGTATAT 57.636 45.455 0.00 0.00 44.69 0.86
1024 8076 0.035458 AGAAGAGAGGCACCAAACGG 59.965 55.000 0.00 0.00 0.00 4.44
1069 8129 0.039527 GGCAACACGAACACCAATCC 60.040 55.000 0.00 0.00 0.00 3.01
1078 8138 3.502211 ACGAACACCAATCCATCAGAAAC 59.498 43.478 0.00 0.00 0.00 2.78
1081 8141 4.104383 ACACCAATCCATCAGAAACAGT 57.896 40.909 0.00 0.00 0.00 3.55
1088 8148 1.081892 CATCAGAAACAGTCCAGCGG 58.918 55.000 0.00 0.00 0.00 5.52
1156 8217 2.366167 AGCGGCAGGAGGGATCTT 60.366 61.111 1.45 0.00 0.00 2.40
1206 8279 1.472376 GCTCGTGCTCTTCTTGCCTAT 60.472 52.381 1.41 0.00 36.03 2.57
1237 8313 2.764128 ACGGTCCCCAGCATCGAT 60.764 61.111 0.00 0.00 0.00 3.59
1315 8391 2.032071 ACCTTCGACGCCAAAGGG 59.968 61.111 15.80 0.55 45.27 3.95
1396 8472 0.737219 GCTGGTCGACGTACACCTAT 59.263 55.000 9.92 0.00 33.36 2.57
1447 8523 2.754658 TCTCTCCTTCGCCCGGAC 60.755 66.667 0.73 0.00 0.00 4.79
1549 8632 1.002134 CAAGGGACTCATGCGGGTT 60.002 57.895 0.00 0.00 38.49 4.11
1550 8633 0.251916 CAAGGGACTCATGCGGGTTA 59.748 55.000 0.00 0.00 38.49 2.85
1601 8684 2.047274 CGGAGGTTGATGGCGTGT 60.047 61.111 0.00 0.00 0.00 4.49
1720 8803 1.340248 GTCACAAGAACCGGAGACTCA 59.660 52.381 9.46 0.00 0.00 3.41
1756 8839 0.976073 AGGTATGACCCACGGACAGG 60.976 60.000 0.00 0.00 39.75 4.00
1767 8850 2.434774 GGACAGGGAAAGGCCGTT 59.565 61.111 2.60 2.60 37.63 4.44
1776 8859 1.452145 GAAAGGCCGTTGTGCTCCAA 61.452 55.000 9.25 0.00 0.00 3.53
1779 8862 2.980233 GCCGTTGTGCTCCAAGCT 60.980 61.111 0.11 0.00 42.97 3.74
1797 8880 2.084546 GCTGACATCACTTACCCCAAC 58.915 52.381 0.00 0.00 0.00 3.77
1846 8929 9.249457 GAACACATTTAATCATCTCATCGACTA 57.751 33.333 0.00 0.00 0.00 2.59
1908 8991 0.532862 CGGGCACGATGGAGCTATTT 60.533 55.000 0.00 0.00 44.60 1.40
1947 9030 1.064906 CCAGACAATGTGAGGCCTGAT 60.065 52.381 12.00 0.00 0.00 2.90
1988 9071 0.175760 GCGCTACACCATGAGAAGGA 59.824 55.000 0.00 0.00 0.00 3.36
2040 9123 0.911769 TTGCCCTGAGGATCGATGTT 59.088 50.000 0.54 0.00 38.61 2.71
2071 9154 7.552050 AAAATAATCGAGGAGATGAGAGGAT 57.448 36.000 0.00 0.00 40.02 3.24
2136 9219 3.282021 CAGATTGTTCATGGGATCCGTT 58.718 45.455 5.45 0.00 0.00 4.44
2452 9578 9.791838 GAAATAAATTGTTCGCAAAAACTAAGG 57.208 29.630 0.00 0.00 40.90 2.69
2466 9597 1.005687 ACTAAGGCGGTCCAGAGTACT 59.994 52.381 0.00 0.00 30.50 2.73
2472 9603 2.357323 GGCGGTCCAGAGTACTAGTAAC 59.643 54.545 3.61 2.34 0.00 2.50
2482 9613 8.327271 TCCAGAGTACTAGTAACTACTCACAAT 58.673 37.037 20.45 2.86 40.92 2.71
2506 9639 9.643693 AATAACAAAAGCAATCCAATCTTACAG 57.356 29.630 0.00 0.00 0.00 2.74
2587 9881 4.248058 GCTGCCAGCAAAAATCTACAAAT 58.752 39.130 12.82 0.00 41.89 2.32
2588 9882 4.692155 GCTGCCAGCAAAAATCTACAAATT 59.308 37.500 12.82 0.00 41.89 1.82
2589 9883 5.868801 GCTGCCAGCAAAAATCTACAAATTA 59.131 36.000 12.82 0.00 41.89 1.40
2590 9884 6.368516 GCTGCCAGCAAAAATCTACAAATTAA 59.631 34.615 12.82 0.00 41.89 1.40
2591 9885 7.095271 GCTGCCAGCAAAAATCTACAAATTAAA 60.095 33.333 12.82 0.00 41.89 1.52
2592 9886 8.668510 TGCCAGCAAAAATCTACAAATTAAAA 57.331 26.923 0.00 0.00 0.00 1.52
2649 9943 4.258543 ACAAGAAAAGTCAGTCGGTTCAA 58.741 39.130 0.00 0.00 0.00 2.69
2795 10104 5.065704 ACGCCATATACAAAATGCACAAA 57.934 34.783 0.00 0.00 0.00 2.83
2798 10107 4.862018 GCCATATACAAAATGCACAAACGT 59.138 37.500 0.00 0.00 0.00 3.99
2832 10141 1.338973 TCCGACGAACAAGCTACACTT 59.661 47.619 0.00 0.00 40.05 3.16
2834 10143 1.719780 CGACGAACAAGCTACACTTCC 59.280 52.381 0.00 0.00 36.04 3.46
2838 10147 2.480419 CGAACAAGCTACACTTCCTTGG 59.520 50.000 0.00 0.00 40.08 3.61
2871 10180 0.613853 CCGTGTCACTTCCCCTCCTA 60.614 60.000 0.65 0.00 0.00 2.94
2935 10244 0.804989 CAGAACCAACTTCCGATGCC 59.195 55.000 0.00 0.00 0.00 4.40
2975 10285 2.749621 GGTACTTGTCAATTGGCTCAGG 59.250 50.000 12.01 8.73 0.00 3.86
2990 10300 2.753296 CTCAGGATTTCTCTCGATGCC 58.247 52.381 0.00 0.00 0.00 4.40
3016 10326 1.966563 CGAACAACAAATACAACCGCG 59.033 47.619 0.00 0.00 0.00 6.46
3062 10372 7.885297 ACACATGCAGAAGTTTATTGTATTGT 58.115 30.769 0.00 0.00 0.00 2.71
3079 10389 9.612066 ATTGTATTGTTTTTGTTGGAGTGAATT 57.388 25.926 0.00 0.00 0.00 2.17
3080 10390 8.417780 TGTATTGTTTTTGTTGGAGTGAATTG 57.582 30.769 0.00 0.00 0.00 2.32
3081 10391 5.793026 TTGTTTTTGTTGGAGTGAATTGC 57.207 34.783 0.00 0.00 0.00 3.56
3082 10392 4.825422 TGTTTTTGTTGGAGTGAATTGCA 58.175 34.783 0.00 0.00 0.00 4.08
3083 10393 4.869297 TGTTTTTGTTGGAGTGAATTGCAG 59.131 37.500 0.00 0.00 0.00 4.41
3084 10394 4.998671 TTTTGTTGGAGTGAATTGCAGA 57.001 36.364 0.00 0.00 0.00 4.26
3085 10395 4.998671 TTTGTTGGAGTGAATTGCAGAA 57.001 36.364 0.00 0.00 0.00 3.02
3086 10396 4.998671 TTGTTGGAGTGAATTGCAGAAA 57.001 36.364 0.00 0.00 0.00 2.52
3087 10397 4.998671 TGTTGGAGTGAATTGCAGAAAA 57.001 36.364 0.00 0.00 0.00 2.29
3088 10398 5.534207 TGTTGGAGTGAATTGCAGAAAAT 57.466 34.783 0.00 0.00 0.00 1.82
3089 10399 6.647334 TGTTGGAGTGAATTGCAGAAAATA 57.353 33.333 0.00 0.00 0.00 1.40
3090 10400 7.230849 TGTTGGAGTGAATTGCAGAAAATAT 57.769 32.000 0.00 0.00 0.00 1.28
3091 10401 7.315142 TGTTGGAGTGAATTGCAGAAAATATC 58.685 34.615 0.00 0.00 0.00 1.63
3092 10402 6.122850 TGGAGTGAATTGCAGAAAATATCG 57.877 37.500 0.00 0.00 0.00 2.92
3093 10403 5.879777 TGGAGTGAATTGCAGAAAATATCGA 59.120 36.000 0.00 0.00 0.00 3.59
3094 10404 6.183360 TGGAGTGAATTGCAGAAAATATCGAC 60.183 38.462 0.00 0.00 0.00 4.20
3095 10405 6.183360 GGAGTGAATTGCAGAAAATATCGACA 60.183 38.462 0.00 0.00 0.00 4.35
3096 10406 7.325660 AGTGAATTGCAGAAAATATCGACAT 57.674 32.000 0.00 0.00 0.00 3.06
3097 10407 7.765307 AGTGAATTGCAGAAAATATCGACATT 58.235 30.769 0.00 0.00 0.00 2.71
3098 10408 7.699391 AGTGAATTGCAGAAAATATCGACATTG 59.301 33.333 0.00 0.00 0.00 2.82
3099 10409 7.697710 GTGAATTGCAGAAAATATCGACATTGA 59.302 33.333 0.00 0.00 0.00 2.57
3100 10410 8.242739 TGAATTGCAGAAAATATCGACATTGAA 58.757 29.630 0.00 0.00 0.00 2.69
3101 10411 8.624701 AATTGCAGAAAATATCGACATTGAAG 57.375 30.769 0.00 0.00 0.00 3.02
3102 10412 6.122850 TGCAGAAAATATCGACATTGAAGG 57.877 37.500 0.00 0.00 0.00 3.46
3103 10413 4.972440 GCAGAAAATATCGACATTGAAGGC 59.028 41.667 0.00 0.00 0.00 4.35
3104 10414 5.220931 GCAGAAAATATCGACATTGAAGGCT 60.221 40.000 0.00 0.00 0.00 4.58
3105 10415 6.017934 GCAGAAAATATCGACATTGAAGGCTA 60.018 38.462 0.00 0.00 0.00 3.93
3106 10416 7.571026 CAGAAAATATCGACATTGAAGGCTAG 58.429 38.462 0.00 0.00 0.00 3.42
3107 10417 6.708054 AGAAAATATCGACATTGAAGGCTAGG 59.292 38.462 0.00 0.00 0.00 3.02
3108 10418 2.918712 ATCGACATTGAAGGCTAGGG 57.081 50.000 0.00 0.00 0.00 3.53
3109 10419 1.568504 TCGACATTGAAGGCTAGGGT 58.431 50.000 0.00 0.00 0.00 4.34
3110 10420 1.906574 TCGACATTGAAGGCTAGGGTT 59.093 47.619 0.00 0.00 0.00 4.11
3111 10421 2.009774 CGACATTGAAGGCTAGGGTTG 58.990 52.381 0.00 0.00 0.00 3.77
3112 10422 1.745653 GACATTGAAGGCTAGGGTTGC 59.254 52.381 0.00 0.00 0.00 4.17
3113 10423 1.075374 ACATTGAAGGCTAGGGTTGCA 59.925 47.619 0.00 0.00 0.00 4.08
3114 10424 1.747355 CATTGAAGGCTAGGGTTGCAG 59.253 52.381 0.00 0.00 0.00 4.41
3115 10425 1.064003 TTGAAGGCTAGGGTTGCAGA 58.936 50.000 0.00 0.00 0.00 4.26
3116 10426 1.064003 TGAAGGCTAGGGTTGCAGAA 58.936 50.000 0.00 0.00 0.00 3.02
3117 10427 1.423541 TGAAGGCTAGGGTTGCAGAAA 59.576 47.619 0.00 0.00 0.00 2.52
3118 10428 2.041620 TGAAGGCTAGGGTTGCAGAAAT 59.958 45.455 0.00 0.00 0.00 2.17
3119 10429 2.426842 AGGCTAGGGTTGCAGAAATC 57.573 50.000 0.00 0.00 0.00 2.17
3120 10430 1.635487 AGGCTAGGGTTGCAGAAATCA 59.365 47.619 0.00 0.00 0.00 2.57
3121 10431 2.243221 AGGCTAGGGTTGCAGAAATCAT 59.757 45.455 0.00 0.00 0.00 2.45
3122 10432 3.459598 AGGCTAGGGTTGCAGAAATCATA 59.540 43.478 0.00 0.00 0.00 2.15
3123 10433 4.079787 AGGCTAGGGTTGCAGAAATCATAA 60.080 41.667 0.00 0.00 0.00 1.90
3124 10434 4.829492 GGCTAGGGTTGCAGAAATCATAAT 59.171 41.667 0.00 0.00 0.00 1.28
3125 10435 5.302823 GGCTAGGGTTGCAGAAATCATAATT 59.697 40.000 0.00 0.00 0.00 1.40
3126 10436 6.442112 GCTAGGGTTGCAGAAATCATAATTC 58.558 40.000 0.00 0.00 0.00 2.17
3127 10437 6.264067 GCTAGGGTTGCAGAAATCATAATTCT 59.736 38.462 0.00 0.00 37.62 2.40
3128 10438 7.445402 GCTAGGGTTGCAGAAATCATAATTCTA 59.555 37.037 0.00 0.00 35.43 2.10
3129 10439 7.573968 AGGGTTGCAGAAATCATAATTCTAC 57.426 36.000 0.00 0.00 35.43 2.59
3130 10440 6.260936 AGGGTTGCAGAAATCATAATTCTACG 59.739 38.462 0.00 0.00 35.43 3.51
3131 10441 6.430451 GGTTGCAGAAATCATAATTCTACGG 58.570 40.000 0.00 0.00 35.43 4.02
3132 10442 6.038271 GGTTGCAGAAATCATAATTCTACGGT 59.962 38.462 0.00 0.00 35.43 4.83
3133 10443 7.415206 GGTTGCAGAAATCATAATTCTACGGTT 60.415 37.037 0.00 0.00 35.43 4.44
3134 10444 7.624360 TGCAGAAATCATAATTCTACGGTTT 57.376 32.000 0.00 0.00 35.43 3.27
3135 10445 8.050778 TGCAGAAATCATAATTCTACGGTTTT 57.949 30.769 0.00 0.00 35.43 2.43
3136 10446 7.967854 TGCAGAAATCATAATTCTACGGTTTTG 59.032 33.333 0.00 0.00 35.43 2.44
3137 10447 7.968405 GCAGAAATCATAATTCTACGGTTTTGT 59.032 33.333 0.00 0.00 35.43 2.83
3138 10448 9.277565 CAGAAATCATAATTCTACGGTTTTGTG 57.722 33.333 0.00 0.00 35.43 3.33
3139 10449 7.968405 AGAAATCATAATTCTACGGTTTTGTGC 59.032 33.333 0.00 0.00 35.43 4.57
3140 10450 5.554822 TCATAATTCTACGGTTTTGTGCC 57.445 39.130 0.00 0.00 0.00 5.01
3141 10451 5.004448 TCATAATTCTACGGTTTTGTGCCA 58.996 37.500 0.00 0.00 0.00 4.92
3142 10452 5.473846 TCATAATTCTACGGTTTTGTGCCAA 59.526 36.000 0.00 0.00 0.00 4.52
3143 10453 4.657436 AATTCTACGGTTTTGTGCCAAA 57.343 36.364 0.00 0.00 0.00 3.28
3144 10454 4.657436 ATTCTACGGTTTTGTGCCAAAA 57.343 36.364 8.46 8.46 0.00 2.44
3145 10455 4.451629 TTCTACGGTTTTGTGCCAAAAA 57.548 36.364 12.69 2.78 0.00 1.94
3146 10456 3.771798 TCTACGGTTTTGTGCCAAAAAC 58.228 40.909 14.75 14.75 45.29 2.43
3154 10464 6.429791 GTTTTGTGCCAAAAACCACTAATT 57.570 33.333 12.69 0.00 41.92 1.40
3155 10465 6.482835 GTTTTGTGCCAAAAACCACTAATTC 58.517 36.000 12.69 0.00 41.92 2.17
3156 10466 4.329462 TGTGCCAAAAACCACTAATTCC 57.671 40.909 0.00 0.00 33.26 3.01
3157 10467 3.964031 TGTGCCAAAAACCACTAATTCCT 59.036 39.130 0.00 0.00 33.26 3.36
3158 10468 5.141182 TGTGCCAAAAACCACTAATTCCTA 58.859 37.500 0.00 0.00 33.26 2.94
3159 10469 5.242838 TGTGCCAAAAACCACTAATTCCTAG 59.757 40.000 0.00 0.00 33.26 3.02
3160 10470 4.219725 TGCCAAAAACCACTAATTCCTAGC 59.780 41.667 0.00 0.00 0.00 3.42
3161 10471 4.381612 GCCAAAAACCACTAATTCCTAGCC 60.382 45.833 0.00 0.00 0.00 3.93
3162 10472 4.159693 CCAAAAACCACTAATTCCTAGCCC 59.840 45.833 0.00 0.00 0.00 5.19
3163 10473 4.948062 AAAACCACTAATTCCTAGCCCT 57.052 40.909 0.00 0.00 0.00 5.19
3164 10474 4.948062 AAACCACTAATTCCTAGCCCTT 57.052 40.909 0.00 0.00 0.00 3.95
3165 10475 4.948062 AACCACTAATTCCTAGCCCTTT 57.052 40.909 0.00 0.00 0.00 3.11
3166 10476 4.948062 ACCACTAATTCCTAGCCCTTTT 57.052 40.909 0.00 0.00 0.00 2.27
3167 10477 5.270979 ACCACTAATTCCTAGCCCTTTTT 57.729 39.130 0.00 0.00 0.00 1.94
3194 10504 2.241171 AAAAACACTAGTCGCCCGC 58.759 52.632 0.00 0.00 0.00 6.13
3195 10505 0.250166 AAAAACACTAGTCGCCCGCT 60.250 50.000 0.00 0.00 0.00 5.52
3196 10506 0.250166 AAAACACTAGTCGCCCGCTT 60.250 50.000 0.00 0.00 0.00 4.68
3197 10507 0.604578 AAACACTAGTCGCCCGCTTA 59.395 50.000 0.00 0.00 0.00 3.09
3198 10508 0.172803 AACACTAGTCGCCCGCTTAG 59.827 55.000 0.00 0.00 0.00 2.18
3199 10509 1.065928 CACTAGTCGCCCGCTTAGG 59.934 63.158 0.00 0.00 40.63 2.69
3208 10518 1.815866 CCCGCTTAGGCCATTTTGG 59.184 57.895 5.01 0.05 41.55 3.28
3227 10537 2.260247 CCATGATTATGGCAGGCGG 58.740 57.895 3.17 0.00 46.84 6.13
3228 10538 1.246056 CCATGATTATGGCAGGCGGG 61.246 60.000 3.17 0.00 46.84 6.13
3229 10539 0.538057 CATGATTATGGCAGGCGGGT 60.538 55.000 0.00 0.00 0.00 5.28
3230 10540 0.250901 ATGATTATGGCAGGCGGGTC 60.251 55.000 0.00 0.00 0.00 4.46
3231 10541 1.600916 GATTATGGCAGGCGGGTCC 60.601 63.158 0.00 0.00 0.00 4.46
3232 10542 3.133365 ATTATGGCAGGCGGGTCCC 62.133 63.158 0.00 0.00 34.51 4.46
3238 10548 3.636231 CAGGCGGGTCCCACTGAA 61.636 66.667 20.20 0.00 32.25 3.02
3239 10549 3.637273 AGGCGGGTCCCACTGAAC 61.637 66.667 9.12 0.00 34.51 3.18
3240 10550 3.948719 GGCGGGTCCCACTGAACA 61.949 66.667 9.12 0.00 29.57 3.18
3241 10551 2.358737 GCGGGTCCCACTGAACAG 60.359 66.667 9.12 0.00 29.57 3.16
3242 10552 3.148084 CGGGTCCCACTGAACAGT 58.852 61.111 9.12 1.32 43.61 3.55
3252 10562 1.597742 ACTGAACAGTGTGATGTGGC 58.402 50.000 6.67 0.00 40.75 5.01
3253 10563 1.134128 ACTGAACAGTGTGATGTGGCA 60.134 47.619 6.67 0.00 40.75 4.92
3254 10564 2.156917 CTGAACAGTGTGATGTGGCAT 58.843 47.619 0.00 0.00 32.52 4.40
3255 10565 3.244526 ACTGAACAGTGTGATGTGGCATA 60.245 43.478 6.67 0.00 40.75 3.14
3256 10566 3.749226 TGAACAGTGTGATGTGGCATAA 58.251 40.909 0.00 0.00 32.52 1.90
3257 10567 3.501828 TGAACAGTGTGATGTGGCATAAC 59.498 43.478 0.00 0.00 32.52 1.89
3258 10568 3.138884 ACAGTGTGATGTGGCATAACA 57.861 42.857 0.00 0.00 30.46 2.41
3259 10569 3.689347 ACAGTGTGATGTGGCATAACAT 58.311 40.909 0.00 0.00 43.47 2.71
3260 10570 4.842574 ACAGTGTGATGTGGCATAACATA 58.157 39.130 0.00 0.00 40.87 2.29
3261 10571 5.252547 ACAGTGTGATGTGGCATAACATAA 58.747 37.500 0.00 0.00 40.87 1.90
3262 10572 5.123820 ACAGTGTGATGTGGCATAACATAAC 59.876 40.000 0.00 6.86 40.87 1.89
3263 10573 5.123661 CAGTGTGATGTGGCATAACATAACA 59.876 40.000 10.88 10.88 45.68 2.41
3264 10574 5.816449 TGTGATGTGGCATAACATAACAG 57.184 39.130 10.88 0.00 43.88 3.16
3265 10575 5.495640 TGTGATGTGGCATAACATAACAGA 58.504 37.500 10.88 0.00 43.88 3.41
3266 10576 6.121590 TGTGATGTGGCATAACATAACAGAT 58.878 36.000 10.88 0.00 43.88 2.90
3267 10577 6.260714 TGTGATGTGGCATAACATAACAGATC 59.739 38.462 10.88 0.00 43.88 2.75
3268 10578 6.260714 GTGATGTGGCATAACATAACAGATCA 59.739 38.462 8.36 0.00 40.41 2.92
3269 10579 6.999871 TGATGTGGCATAACATAACAGATCAT 59.000 34.615 0.00 0.00 40.87 2.45
3270 10580 8.156165 TGATGTGGCATAACATAACAGATCATA 58.844 33.333 0.00 0.00 40.87 2.15
3271 10581 8.922931 ATGTGGCATAACATAACAGATCATAA 57.077 30.769 0.00 0.00 39.01 1.90
3272 10582 8.744568 TGTGGCATAACATAACAGATCATAAA 57.255 30.769 0.00 0.00 0.00 1.40
3273 10583 9.353431 TGTGGCATAACATAACAGATCATAAAT 57.647 29.630 0.00 0.00 0.00 1.40
3285 10595 8.970859 AACAGATCATAAATAGACAGAAAGGG 57.029 34.615 0.00 0.00 0.00 3.95
3286 10596 8.324191 ACAGATCATAAATAGACAGAAAGGGA 57.676 34.615 0.00 0.00 0.00 4.20
3287 10597 8.943085 ACAGATCATAAATAGACAGAAAGGGAT 58.057 33.333 0.00 0.00 0.00 3.85
3292 10602 9.661954 TCATAAATAGACAGAAAGGGATAGACT 57.338 33.333 0.00 0.00 0.00 3.24
3297 10607 9.495382 AATAGACAGAAAGGGATAGACTAAACT 57.505 33.333 0.00 0.00 0.00 2.66
3298 10608 7.176589 AGACAGAAAGGGATAGACTAAACTG 57.823 40.000 0.00 0.00 0.00 3.16
3299 10609 6.726764 AGACAGAAAGGGATAGACTAAACTGT 59.273 38.462 0.00 0.00 37.53 3.55
3300 10610 7.894364 AGACAGAAAGGGATAGACTAAACTGTA 59.106 37.037 0.00 0.00 35.51 2.74
3301 10611 8.431910 ACAGAAAGGGATAGACTAAACTGTAA 57.568 34.615 0.00 0.00 34.01 2.41
3302 10612 8.877195 ACAGAAAGGGATAGACTAAACTGTAAA 58.123 33.333 0.00 0.00 34.01 2.01
3303 10613 9.720769 CAGAAAGGGATAGACTAAACTGTAAAA 57.279 33.333 0.00 0.00 0.00 1.52
3304 10614 9.945904 AGAAAGGGATAGACTAAACTGTAAAAG 57.054 33.333 0.00 0.00 0.00 2.27
3305 10615 9.163899 GAAAGGGATAGACTAAACTGTAAAAGG 57.836 37.037 0.00 0.00 0.00 3.11
3306 10616 6.651086 AGGGATAGACTAAACTGTAAAAGGC 58.349 40.000 0.00 0.00 0.00 4.35
3307 10617 5.821470 GGGATAGACTAAACTGTAAAAGGCC 59.179 44.000 0.00 0.00 0.00 5.19
3308 10618 6.412214 GGATAGACTAAACTGTAAAAGGCCA 58.588 40.000 5.01 0.00 0.00 5.36
3309 10619 6.882678 GGATAGACTAAACTGTAAAAGGCCAA 59.117 38.462 5.01 0.00 0.00 4.52
3310 10620 7.392393 GGATAGACTAAACTGTAAAAGGCCAAA 59.608 37.037 5.01 0.00 0.00 3.28
3311 10621 6.635030 AGACTAAACTGTAAAAGGCCAAAG 57.365 37.500 5.01 0.00 0.00 2.77
3312 10622 6.362248 AGACTAAACTGTAAAAGGCCAAAGA 58.638 36.000 5.01 0.00 0.00 2.52
3313 10623 6.486993 AGACTAAACTGTAAAAGGCCAAAGAG 59.513 38.462 5.01 0.00 0.00 2.85
3314 10624 4.937201 AAACTGTAAAAGGCCAAAGAGG 57.063 40.909 5.01 0.00 41.84 3.69
3315 10625 3.876309 ACTGTAAAAGGCCAAAGAGGA 57.124 42.857 5.01 0.00 41.22 3.71
3316 10626 4.388577 ACTGTAAAAGGCCAAAGAGGAT 57.611 40.909 5.01 0.00 41.22 3.24
3317 10627 5.514500 ACTGTAAAAGGCCAAAGAGGATA 57.486 39.130 5.01 0.00 41.22 2.59
3318 10628 5.887754 ACTGTAAAAGGCCAAAGAGGATAA 58.112 37.500 5.01 0.00 41.22 1.75
3319 10629 5.946377 ACTGTAAAAGGCCAAAGAGGATAAG 59.054 40.000 5.01 0.00 41.22 1.73
3320 10630 5.261216 TGTAAAAGGCCAAAGAGGATAAGG 58.739 41.667 5.01 0.00 41.22 2.69
3321 10631 4.404185 AAAAGGCCAAAGAGGATAAGGT 57.596 40.909 5.01 0.00 41.22 3.50
3322 10632 3.372440 AAGGCCAAAGAGGATAAGGTG 57.628 47.619 5.01 0.00 41.22 4.00
3323 10633 1.566231 AGGCCAAAGAGGATAAGGTGG 59.434 52.381 5.01 0.00 41.22 4.61
3324 10634 1.285078 GGCCAAAGAGGATAAGGTGGT 59.715 52.381 0.00 0.00 41.22 4.16
3325 10635 2.369394 GCCAAAGAGGATAAGGTGGTG 58.631 52.381 0.00 0.00 41.22 4.17
3326 10636 2.369394 CCAAAGAGGATAAGGTGGTGC 58.631 52.381 0.00 0.00 41.22 5.01
3327 10637 2.025887 CCAAAGAGGATAAGGTGGTGCT 60.026 50.000 0.00 0.00 41.22 4.40
3328 10638 3.012518 CAAAGAGGATAAGGTGGTGCTG 58.987 50.000 0.00 0.00 0.00 4.41
3329 10639 1.958288 AGAGGATAAGGTGGTGCTGT 58.042 50.000 0.00 0.00 0.00 4.40
3330 10640 2.269940 AGAGGATAAGGTGGTGCTGTT 58.730 47.619 0.00 0.00 0.00 3.16
3331 10641 3.450904 AGAGGATAAGGTGGTGCTGTTA 58.549 45.455 0.00 0.00 0.00 2.41
3332 10642 3.844211 AGAGGATAAGGTGGTGCTGTTAA 59.156 43.478 0.00 0.00 0.00 2.01
3333 10643 4.288626 AGAGGATAAGGTGGTGCTGTTAAA 59.711 41.667 0.00 0.00 0.00 1.52
3334 10644 4.993028 AGGATAAGGTGGTGCTGTTAAAA 58.007 39.130 0.00 0.00 0.00 1.52
3335 10645 5.390387 AGGATAAGGTGGTGCTGTTAAAAA 58.610 37.500 0.00 0.00 0.00 1.94
3357 10667 6.441088 AAAAAGAGAGGATAAGGTGTGAGT 57.559 37.500 0.00 0.00 0.00 3.41
3358 10668 5.669164 AAAGAGAGGATAAGGTGTGAGTC 57.331 43.478 0.00 0.00 0.00 3.36
3359 10669 3.283751 AGAGAGGATAAGGTGTGAGTCG 58.716 50.000 0.00 0.00 0.00 4.18
3360 10670 3.018149 GAGAGGATAAGGTGTGAGTCGT 58.982 50.000 0.00 0.00 0.00 4.34
3361 10671 3.018149 AGAGGATAAGGTGTGAGTCGTC 58.982 50.000 0.00 0.00 0.00 4.20
3362 10672 2.099427 GAGGATAAGGTGTGAGTCGTCC 59.901 54.545 0.00 0.00 0.00 4.79
3363 10673 2.100989 GGATAAGGTGTGAGTCGTCCT 58.899 52.381 0.00 0.00 0.00 3.85
3364 10674 2.496470 GGATAAGGTGTGAGTCGTCCTT 59.504 50.000 14.59 14.59 42.10 3.36
3365 10675 3.429135 GGATAAGGTGTGAGTCGTCCTTC 60.429 52.174 13.89 4.68 40.26 3.46
3366 10676 0.680061 AAGGTGTGAGTCGTCCTTCC 59.320 55.000 7.27 0.00 35.70 3.46
3367 10677 0.178958 AGGTGTGAGTCGTCCTTCCT 60.179 55.000 0.00 0.00 0.00 3.36
3368 10678 0.244178 GGTGTGAGTCGTCCTTCCTC 59.756 60.000 0.00 0.00 0.00 3.71
3369 10679 1.249407 GTGTGAGTCGTCCTTCCTCT 58.751 55.000 0.00 0.00 0.00 3.69
3370 10680 1.200484 GTGTGAGTCGTCCTTCCTCTC 59.800 57.143 0.00 0.00 0.00 3.20
3371 10681 0.812549 GTGAGTCGTCCTTCCTCTCC 59.187 60.000 0.00 0.00 0.00 3.71
3372 10682 0.323542 TGAGTCGTCCTTCCTCTCCC 60.324 60.000 0.00 0.00 0.00 4.30
3373 10683 1.000612 AGTCGTCCTTCCTCTCCCC 59.999 63.158 0.00 0.00 0.00 4.81
3374 10684 1.305046 GTCGTCCTTCCTCTCCCCA 60.305 63.158 0.00 0.00 0.00 4.96
3375 10685 1.000486 TCGTCCTTCCTCTCCCCAG 60.000 63.158 0.00 0.00 0.00 4.45
3376 10686 2.726351 CGTCCTTCCTCTCCCCAGC 61.726 68.421 0.00 0.00 0.00 4.85
3377 10687 2.364317 TCCTTCCTCTCCCCAGCG 60.364 66.667 0.00 0.00 0.00 5.18
3378 10688 4.168291 CCTTCCTCTCCCCAGCGC 62.168 72.222 0.00 0.00 0.00 5.92
3379 10689 4.168291 CTTCCTCTCCCCAGCGCC 62.168 72.222 2.29 0.00 0.00 6.53
3402 10712 3.470567 GTGCGCACGAGTTCTCGG 61.471 66.667 26.77 14.16 37.45 4.63
3410 10720 4.856607 GAGTTCTCGGCCGGCGAG 62.857 72.222 32.35 32.35 35.05 5.03
3412 10722 4.736896 GTTCTCGGCCGGCGAGTT 62.737 66.667 34.88 0.00 35.26 3.01
3413 10723 4.430765 TTCTCGGCCGGCGAGTTC 62.431 66.667 34.88 16.47 35.26 3.01
3424 10734 4.162640 CGAGTTCGCAATGGACGA 57.837 55.556 0.00 0.00 37.86 4.20
3425 10735 1.702299 CGAGTTCGCAATGGACGAC 59.298 57.895 0.00 0.00 39.67 4.34
3426 10736 1.702299 GAGTTCGCAATGGACGACG 59.298 57.895 0.00 0.00 39.67 5.12
3427 10737 1.683790 GAGTTCGCAATGGACGACGG 61.684 60.000 0.00 0.00 39.67 4.79
3428 10738 3.115892 TTCGCAATGGACGACGGC 61.116 61.111 0.00 0.00 39.67 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 107 3.948719 GTGACGGGGGCTGGTTCA 61.949 66.667 0.00 0.00 0.00 3.18
338 418 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
342 422 1.598882 TTGTGTGTGTGTGTGTGTGT 58.401 45.000 0.00 0.00 0.00 3.72
375 508 3.138304 GAGAGGTGCATTGTGTGTGTAA 58.862 45.455 0.00 0.00 0.00 2.41
389 522 1.880340 GCGAATGGCGAGAGAGGTG 60.880 63.158 0.00 0.00 44.57 4.00
595 733 7.424452 GTCGTACGACCAATCAAATTGATAAAC 59.576 37.037 33.07 5.92 40.12 2.01
620 758 0.044855 ATAGGGCCCACCAGAGAAGT 59.955 55.000 27.56 0.25 43.89 3.01
623 761 1.074471 GGATAGGGCCCACCAGAGA 60.074 63.158 27.56 0.00 43.89 3.10
652 795 6.000840 AGAAGAAGAAGAAAACCATGTCTCC 58.999 40.000 0.00 0.00 0.00 3.71
749 894 9.314321 AGTCATTTTCGGTTACTCATGTTATAG 57.686 33.333 0.00 0.00 0.00 1.31
751 896 8.561738 AAGTCATTTTCGGTTACTCATGTTAT 57.438 30.769 0.00 0.00 0.00 1.89
818 963 8.077991 CCTCCGAAGTACGTATTGAAATACATA 58.922 37.037 12.42 0.34 40.97 2.29
834 979 9.425248 TTTTTCTTATATACTCCCTCCGAAGTA 57.575 33.333 0.00 0.00 0.00 2.24
837 982 7.202066 CCCTTTTTCTTATATACTCCCTCCGAA 60.202 40.741 0.00 0.00 0.00 4.30
1024 8076 1.959282 GGATTGATTGATGCCCTGGTC 59.041 52.381 0.00 0.00 0.00 4.02
1058 8118 4.520492 ACTGTTTCTGATGGATTGGTGTTC 59.480 41.667 0.00 0.00 0.00 3.18
1069 8129 1.081892 CCGCTGGACTGTTTCTGATG 58.918 55.000 0.00 0.00 0.00 3.07
1078 8138 2.738521 CCGTGTTCCGCTGGACTG 60.739 66.667 0.00 0.00 34.38 3.51
1097 8157 2.442188 GGCGATGGTGTTCGACGAC 61.442 63.158 0.00 0.00 41.62 4.34
1101 8161 2.024868 CGTTGGCGATGGTGTTCGA 61.025 57.895 0.00 0.00 41.62 3.71
1102 8162 1.955529 CTCGTTGGCGATGGTGTTCG 61.956 60.000 0.00 0.00 46.80 3.95
1103 8163 1.635663 CCTCGTTGGCGATGGTGTTC 61.636 60.000 0.00 0.00 46.80 3.18
1396 8472 1.895238 GCTGCTGTAGTCGGGGTTA 59.105 57.895 0.00 0.00 0.00 2.85
1601 8684 1.289066 CGTTGGTGAAGCGGAGAGA 59.711 57.895 0.00 0.00 0.00 3.10
1630 8713 2.601067 TCGCCGGTTACCTGGTCA 60.601 61.111 0.63 0.00 0.00 4.02
1720 8803 1.749638 CTCAGTAGCCGACCCGTCT 60.750 63.158 0.00 0.00 0.00 4.18
1756 8839 2.626780 GGAGCACAACGGCCTTTCC 61.627 63.158 0.00 0.00 0.00 3.13
1767 8850 0.397564 TGATGTCAGCTTGGAGCACA 59.602 50.000 2.47 0.00 45.56 4.57
1776 8859 1.656587 TGGGGTAAGTGATGTCAGCT 58.343 50.000 0.00 0.00 0.00 4.24
1779 8862 1.002659 CCGTTGGGGTAAGTGATGTCA 59.997 52.381 0.00 0.00 0.00 3.58
1846 8929 1.218316 GTAGCAGCTTACACGGCCT 59.782 57.895 0.00 0.00 0.00 5.19
1923 9006 3.051581 AGGCCTCACATTGTCTGGATAT 58.948 45.455 0.00 0.00 0.00 1.63
1947 9030 4.037927 CCACCCAGTATCCTCCTTTCTTA 58.962 47.826 0.00 0.00 0.00 2.10
1988 9071 2.273449 CGCCAAAGGGGAGCTCAT 59.727 61.111 17.19 0.00 40.01 2.90
2040 9123 5.333299 TCTCCTCGATTATTTTTCCGTCA 57.667 39.130 0.00 0.00 0.00 4.35
2071 9154 4.069232 CGGCCTCACGCTCTTGGA 62.069 66.667 0.00 0.00 37.74 3.53
2136 9219 4.217767 ACGACTGACACATAAGTAAGCTCA 59.782 41.667 0.00 0.00 0.00 4.26
2372 9496 4.023707 GCTCTTTGCAACTCACAACTGTAT 60.024 41.667 0.00 0.00 42.31 2.29
2452 9578 3.277715 AGTTACTAGTACTCTGGACCGC 58.722 50.000 0.91 0.00 0.00 5.68
2466 9597 9.767228 TGCTTTTGTTATTGTGAGTAGTTACTA 57.233 29.630 0.00 0.00 36.50 1.82
2472 9603 7.592938 TGGATTGCTTTTGTTATTGTGAGTAG 58.407 34.615 0.00 0.00 0.00 2.57
2482 9613 8.402798 TCTGTAAGATTGGATTGCTTTTGTTA 57.597 30.769 0.00 0.00 38.67 2.41
2486 9617 6.721208 TCCTTCTGTAAGATTGGATTGCTTTT 59.279 34.615 0.00 0.00 46.36 2.27
2587 9881 8.806634 GCGAAAGAATATGTTGATGCATTTTAA 58.193 29.630 0.00 0.00 0.00 1.52
2588 9882 7.165647 CGCGAAAGAATATGTTGATGCATTTTA 59.834 33.333 0.00 0.00 0.00 1.52
2589 9883 6.020440 CGCGAAAGAATATGTTGATGCATTTT 60.020 34.615 0.00 0.00 0.00 1.82
2590 9884 5.456497 CGCGAAAGAATATGTTGATGCATTT 59.544 36.000 0.00 0.00 0.00 2.32
2591 9885 4.971830 CGCGAAAGAATATGTTGATGCATT 59.028 37.500 0.00 0.00 0.00 3.56
2592 9886 4.273235 TCGCGAAAGAATATGTTGATGCAT 59.727 37.500 6.20 0.00 0.00 3.96
2623 9917 4.120589 ACCGACTGACTTTTCTTGTTCTC 58.879 43.478 0.00 0.00 0.00 2.87
2649 9943 0.946221 CTTGTGCCTCGCGTTCTCTT 60.946 55.000 5.77 0.00 0.00 2.85
2795 10104 1.030457 GGATCGGTCCATGTAGACGT 58.970 55.000 10.69 0.00 44.42 4.34
2798 10107 1.315690 GTCGGATCGGTCCATGTAGA 58.684 55.000 16.61 0.00 45.37 2.59
2832 10141 1.619432 GCCATTGATTGGGACCAAGGA 60.619 52.381 9.90 0.00 46.55 3.36
2834 10143 0.826062 GGCCATTGATTGGGACCAAG 59.174 55.000 9.90 0.00 46.55 3.61
2838 10147 0.965363 ACACGGCCATTGATTGGGAC 60.965 55.000 2.24 0.00 46.55 4.46
2871 10180 1.598130 GACGGCTTCAAGCACAGGT 60.598 57.895 12.53 2.93 44.75 4.00
2935 10244 4.159377 ACCAACATGCATAAACTTCACG 57.841 40.909 0.00 0.00 0.00 4.35
2990 10300 4.967575 GGTTGTATTTGTTGTTCGTCACAG 59.032 41.667 0.00 0.00 36.48 3.66
3016 10326 6.127925 TGTGTATTTTCTGGAATGATGAGCAC 60.128 38.462 0.00 0.00 0.00 4.40
3062 10372 5.336150 TCTGCAATTCACTCCAACAAAAA 57.664 34.783 0.00 0.00 0.00 1.94
3071 10381 6.775088 TGTCGATATTTTCTGCAATTCACTC 58.225 36.000 0.00 0.00 0.00 3.51
3078 10388 6.554419 CCTTCAATGTCGATATTTTCTGCAA 58.446 36.000 4.45 0.00 0.00 4.08
3079 10389 5.449041 GCCTTCAATGTCGATATTTTCTGCA 60.449 40.000 4.45 0.00 0.00 4.41
3080 10390 4.972440 GCCTTCAATGTCGATATTTTCTGC 59.028 41.667 4.45 3.07 0.00 4.26
3081 10391 6.369059 AGCCTTCAATGTCGATATTTTCTG 57.631 37.500 4.45 0.00 0.00 3.02
3082 10392 6.708054 CCTAGCCTTCAATGTCGATATTTTCT 59.292 38.462 4.45 1.59 0.00 2.52
3083 10393 6.073003 CCCTAGCCTTCAATGTCGATATTTTC 60.073 42.308 4.45 0.00 0.00 2.29
3084 10394 5.765182 CCCTAGCCTTCAATGTCGATATTTT 59.235 40.000 4.45 0.00 0.00 1.82
3085 10395 5.163195 ACCCTAGCCTTCAATGTCGATATTT 60.163 40.000 4.45 0.00 0.00 1.40
3086 10396 4.348168 ACCCTAGCCTTCAATGTCGATATT 59.652 41.667 0.97 0.97 0.00 1.28
3087 10397 3.904339 ACCCTAGCCTTCAATGTCGATAT 59.096 43.478 0.00 0.00 0.00 1.63
3088 10398 3.305720 ACCCTAGCCTTCAATGTCGATA 58.694 45.455 0.00 0.00 0.00 2.92
3089 10399 2.119495 ACCCTAGCCTTCAATGTCGAT 58.881 47.619 0.00 0.00 0.00 3.59
3090 10400 1.568504 ACCCTAGCCTTCAATGTCGA 58.431 50.000 0.00 0.00 0.00 4.20
3091 10401 2.009774 CAACCCTAGCCTTCAATGTCG 58.990 52.381 0.00 0.00 0.00 4.35
3092 10402 1.745653 GCAACCCTAGCCTTCAATGTC 59.254 52.381 0.00 0.00 0.00 3.06
3093 10403 1.075374 TGCAACCCTAGCCTTCAATGT 59.925 47.619 0.00 0.00 0.00 2.71
3094 10404 1.747355 CTGCAACCCTAGCCTTCAATG 59.253 52.381 0.00 0.00 0.00 2.82
3095 10405 1.635487 TCTGCAACCCTAGCCTTCAAT 59.365 47.619 0.00 0.00 0.00 2.57
3096 10406 1.064003 TCTGCAACCCTAGCCTTCAA 58.936 50.000 0.00 0.00 0.00 2.69
3097 10407 1.064003 TTCTGCAACCCTAGCCTTCA 58.936 50.000 0.00 0.00 0.00 3.02
3098 10408 2.200373 TTTCTGCAACCCTAGCCTTC 57.800 50.000 0.00 0.00 0.00 3.46
3099 10409 2.041620 TGATTTCTGCAACCCTAGCCTT 59.958 45.455 0.00 0.00 0.00 4.35
3100 10410 1.635487 TGATTTCTGCAACCCTAGCCT 59.365 47.619 0.00 0.00 0.00 4.58
3101 10411 2.128771 TGATTTCTGCAACCCTAGCC 57.871 50.000 0.00 0.00 0.00 3.93
3102 10412 6.264067 AGAATTATGATTTCTGCAACCCTAGC 59.736 38.462 0.00 0.00 0.00 3.42
3103 10413 7.814264 AGAATTATGATTTCTGCAACCCTAG 57.186 36.000 0.00 0.00 0.00 3.02
3104 10414 7.441157 CGTAGAATTATGATTTCTGCAACCCTA 59.559 37.037 0.00 0.00 0.00 3.53
3105 10415 6.260936 CGTAGAATTATGATTTCTGCAACCCT 59.739 38.462 0.00 0.00 0.00 4.34
3106 10416 6.430451 CGTAGAATTATGATTTCTGCAACCC 58.570 40.000 0.00 0.00 0.00 4.11
3107 10417 6.038271 ACCGTAGAATTATGATTTCTGCAACC 59.962 38.462 0.00 0.00 0.00 3.77
3108 10418 7.016361 ACCGTAGAATTATGATTTCTGCAAC 57.984 36.000 0.00 0.00 0.00 4.17
3109 10419 7.624360 AACCGTAGAATTATGATTTCTGCAA 57.376 32.000 0.00 0.00 0.00 4.08
3110 10420 7.624360 AAACCGTAGAATTATGATTTCTGCA 57.376 32.000 0.00 0.00 0.00 4.41
3111 10421 7.968405 ACAAAACCGTAGAATTATGATTTCTGC 59.032 33.333 0.00 0.00 0.00 4.26
3112 10422 9.277565 CACAAAACCGTAGAATTATGATTTCTG 57.722 33.333 0.00 0.00 0.00 3.02
3113 10423 7.968405 GCACAAAACCGTAGAATTATGATTTCT 59.032 33.333 0.00 0.00 0.00 2.52
3114 10424 7.220108 GGCACAAAACCGTAGAATTATGATTTC 59.780 37.037 0.00 0.00 0.00 2.17
3115 10425 7.033185 GGCACAAAACCGTAGAATTATGATTT 58.967 34.615 0.00 0.00 0.00 2.17
3116 10426 6.151985 TGGCACAAAACCGTAGAATTATGATT 59.848 34.615 0.00 0.00 31.92 2.57
3117 10427 5.650266 TGGCACAAAACCGTAGAATTATGAT 59.350 36.000 0.00 0.00 31.92 2.45
3118 10428 5.004448 TGGCACAAAACCGTAGAATTATGA 58.996 37.500 0.00 0.00 31.92 2.15
3119 10429 5.303747 TGGCACAAAACCGTAGAATTATG 57.696 39.130 0.00 0.00 31.92 1.90
3135 10445 3.964031 AGGAATTAGTGGTTTTTGGCACA 59.036 39.130 0.00 0.00 0.00 4.57
3136 10446 4.600692 AGGAATTAGTGGTTTTTGGCAC 57.399 40.909 0.00 0.00 0.00 5.01
3137 10447 4.219725 GCTAGGAATTAGTGGTTTTTGGCA 59.780 41.667 0.00 0.00 0.00 4.92
3138 10448 4.381612 GGCTAGGAATTAGTGGTTTTTGGC 60.382 45.833 0.00 0.00 0.00 4.52
3139 10449 4.159693 GGGCTAGGAATTAGTGGTTTTTGG 59.840 45.833 0.00 0.00 0.00 3.28
3140 10450 5.016831 AGGGCTAGGAATTAGTGGTTTTTG 58.983 41.667 0.00 0.00 0.00 2.44
3141 10451 5.270979 AGGGCTAGGAATTAGTGGTTTTT 57.729 39.130 0.00 0.00 0.00 1.94
3142 10452 4.948062 AGGGCTAGGAATTAGTGGTTTT 57.052 40.909 0.00 0.00 0.00 2.43
3143 10453 4.948062 AAGGGCTAGGAATTAGTGGTTT 57.052 40.909 0.00 0.00 0.00 3.27
3144 10454 4.948062 AAAGGGCTAGGAATTAGTGGTT 57.052 40.909 0.00 0.00 0.00 3.67
3145 10455 4.948062 AAAAGGGCTAGGAATTAGTGGT 57.052 40.909 0.00 0.00 0.00 4.16
3176 10486 0.250166 AGCGGGCGACTAGTGTTTTT 60.250 50.000 0.00 0.00 0.00 1.94
3177 10487 0.250166 AAGCGGGCGACTAGTGTTTT 60.250 50.000 0.00 0.00 0.00 2.43
3178 10488 0.604578 TAAGCGGGCGACTAGTGTTT 59.395 50.000 0.00 0.00 0.00 2.83
3179 10489 0.172803 CTAAGCGGGCGACTAGTGTT 59.827 55.000 0.00 0.00 0.00 3.32
3180 10490 1.664321 CCTAAGCGGGCGACTAGTGT 61.664 60.000 0.00 0.00 0.00 3.55
3181 10491 1.065928 CCTAAGCGGGCGACTAGTG 59.934 63.158 0.00 0.00 0.00 2.74
3182 10492 2.783288 GCCTAAGCGGGCGACTAGT 61.783 63.158 0.00 0.00 42.82 2.57
3183 10493 2.027751 GCCTAAGCGGGCGACTAG 59.972 66.667 2.94 0.00 42.82 2.57
3190 10500 1.815866 CCAAAATGGCCTAAGCGGG 59.184 57.895 3.32 0.00 41.24 6.13
3210 10520 0.538057 ACCCGCCTGCCATAATCATG 60.538 55.000 0.00 0.00 0.00 3.07
3211 10521 0.250901 GACCCGCCTGCCATAATCAT 60.251 55.000 0.00 0.00 0.00 2.45
3212 10522 1.148273 GACCCGCCTGCCATAATCA 59.852 57.895 0.00 0.00 0.00 2.57
3213 10523 1.600916 GGACCCGCCTGCCATAATC 60.601 63.158 0.00 0.00 0.00 1.75
3214 10524 2.515901 GGACCCGCCTGCCATAAT 59.484 61.111 0.00 0.00 0.00 1.28
3215 10525 3.804329 GGGACCCGCCTGCCATAA 61.804 66.667 0.00 0.00 36.66 1.90
3221 10531 3.636231 TTCAGTGGGACCCGCCTG 61.636 66.667 20.91 20.07 33.99 4.85
3222 10532 3.637273 GTTCAGTGGGACCCGCCT 61.637 66.667 20.91 8.63 33.99 5.52
3223 10533 3.901797 CTGTTCAGTGGGACCCGCC 62.902 68.421 20.91 6.16 33.99 6.13
3224 10534 2.358737 CTGTTCAGTGGGACCCGC 60.359 66.667 16.95 16.95 0.00 6.13
3225 10535 1.301716 CACTGTTCAGTGGGACCCG 60.302 63.158 21.03 0.00 36.24 5.28
3226 10536 0.535102 CACACTGTTCAGTGGGACCC 60.535 60.000 28.59 2.45 45.49 4.46
3227 10537 0.468226 TCACACTGTTCAGTGGGACC 59.532 55.000 27.25 0.00 46.09 4.46
3230 10540 1.875514 CACATCACACTGTTCAGTGGG 59.124 52.381 28.59 26.46 44.10 4.61
3231 10541 1.875514 CCACATCACACTGTTCAGTGG 59.124 52.381 28.59 19.94 43.59 4.00
3232 10542 1.265095 GCCACATCACACTGTTCAGTG 59.735 52.381 25.27 25.27 44.74 3.66
3233 10543 1.134128 TGCCACATCACACTGTTCAGT 60.134 47.619 0.00 0.00 0.00 3.41
3234 10544 1.596603 TGCCACATCACACTGTTCAG 58.403 50.000 0.00 0.00 0.00 3.02
3235 10545 2.275134 ATGCCACATCACACTGTTCA 57.725 45.000 0.00 0.00 0.00 3.18
3236 10546 3.501828 TGTTATGCCACATCACACTGTTC 59.498 43.478 0.00 0.00 0.00 3.18
3237 10547 3.485394 TGTTATGCCACATCACACTGTT 58.515 40.909 0.00 0.00 0.00 3.16
3238 10548 3.138884 TGTTATGCCACATCACACTGT 57.861 42.857 0.00 0.00 0.00 3.55
3239 10549 5.123661 TGTTATGTTATGCCACATCACACTG 59.876 40.000 0.00 0.00 36.69 3.66
3240 10550 5.252547 TGTTATGTTATGCCACATCACACT 58.747 37.500 0.00 0.00 36.69 3.55
3241 10551 5.353956 TCTGTTATGTTATGCCACATCACAC 59.646 40.000 0.00 0.19 36.69 3.82
3242 10552 5.495640 TCTGTTATGTTATGCCACATCACA 58.504 37.500 7.28 7.28 38.41 3.58
3243 10553 6.260714 TGATCTGTTATGTTATGCCACATCAC 59.739 38.462 0.00 0.00 38.40 3.06
3244 10554 6.355747 TGATCTGTTATGTTATGCCACATCA 58.644 36.000 0.00 0.00 38.40 3.07
3245 10555 6.866010 TGATCTGTTATGTTATGCCACATC 57.134 37.500 0.00 0.00 38.40 3.06
3246 10556 8.922931 TTATGATCTGTTATGTTATGCCACAT 57.077 30.769 0.00 0.00 40.61 3.21
3247 10557 8.744568 TTTATGATCTGTTATGTTATGCCACA 57.255 30.769 0.00 0.00 0.00 4.17
3260 10570 8.772250 TCCCTTTCTGTCTATTTATGATCTGTT 58.228 33.333 0.00 0.00 0.00 3.16
3261 10571 8.324191 TCCCTTTCTGTCTATTTATGATCTGT 57.676 34.615 0.00 0.00 0.00 3.41
3266 10576 9.661954 AGTCTATCCCTTTCTGTCTATTTATGA 57.338 33.333 0.00 0.00 0.00 2.15
3271 10581 9.495382 AGTTTAGTCTATCCCTTTCTGTCTATT 57.505 33.333 0.00 0.00 0.00 1.73
3272 10582 8.919145 CAGTTTAGTCTATCCCTTTCTGTCTAT 58.081 37.037 0.00 0.00 0.00 1.98
3273 10583 7.894364 ACAGTTTAGTCTATCCCTTTCTGTCTA 59.106 37.037 0.00 0.00 0.00 2.59
3274 10584 6.726764 ACAGTTTAGTCTATCCCTTTCTGTCT 59.273 38.462 0.00 0.00 0.00 3.41
3275 10585 6.937392 ACAGTTTAGTCTATCCCTTTCTGTC 58.063 40.000 0.00 0.00 0.00 3.51
3276 10586 6.936968 ACAGTTTAGTCTATCCCTTTCTGT 57.063 37.500 0.00 0.00 0.00 3.41
3277 10587 9.720769 TTTTACAGTTTAGTCTATCCCTTTCTG 57.279 33.333 0.00 0.00 0.00 3.02
3278 10588 9.945904 CTTTTACAGTTTAGTCTATCCCTTTCT 57.054 33.333 0.00 0.00 0.00 2.52
3279 10589 9.163899 CCTTTTACAGTTTAGTCTATCCCTTTC 57.836 37.037 0.00 0.00 0.00 2.62
3280 10590 7.610692 GCCTTTTACAGTTTAGTCTATCCCTTT 59.389 37.037 0.00 0.00 0.00 3.11
3281 10591 7.110810 GCCTTTTACAGTTTAGTCTATCCCTT 58.889 38.462 0.00 0.00 0.00 3.95
3282 10592 6.352823 GGCCTTTTACAGTTTAGTCTATCCCT 60.353 42.308 0.00 0.00 0.00 4.20
3283 10593 5.821470 GGCCTTTTACAGTTTAGTCTATCCC 59.179 44.000 0.00 0.00 0.00 3.85
3284 10594 6.412214 TGGCCTTTTACAGTTTAGTCTATCC 58.588 40.000 3.32 0.00 0.00 2.59
3285 10595 7.916914 TTGGCCTTTTACAGTTTAGTCTATC 57.083 36.000 3.32 0.00 0.00 2.08
3286 10596 8.161425 TCTTTGGCCTTTTACAGTTTAGTCTAT 58.839 33.333 3.32 0.00 0.00 1.98
3287 10597 7.511268 TCTTTGGCCTTTTACAGTTTAGTCTA 58.489 34.615 3.32 0.00 0.00 2.59
3288 10598 6.362248 TCTTTGGCCTTTTACAGTTTAGTCT 58.638 36.000 3.32 0.00 0.00 3.24
3289 10599 6.294010 CCTCTTTGGCCTTTTACAGTTTAGTC 60.294 42.308 3.32 0.00 0.00 2.59
3290 10600 5.535030 CCTCTTTGGCCTTTTACAGTTTAGT 59.465 40.000 3.32 0.00 0.00 2.24
3291 10601 5.768164 TCCTCTTTGGCCTTTTACAGTTTAG 59.232 40.000 3.32 0.00 35.26 1.85
3292 10602 5.697067 TCCTCTTTGGCCTTTTACAGTTTA 58.303 37.500 3.32 0.00 35.26 2.01
3293 10603 4.542697 TCCTCTTTGGCCTTTTACAGTTT 58.457 39.130 3.32 0.00 35.26 2.66
3294 10604 4.178956 TCCTCTTTGGCCTTTTACAGTT 57.821 40.909 3.32 0.00 35.26 3.16
3295 10605 3.876309 TCCTCTTTGGCCTTTTACAGT 57.124 42.857 3.32 0.00 35.26 3.55
3296 10606 5.358160 CCTTATCCTCTTTGGCCTTTTACAG 59.642 44.000 3.32 0.00 35.26 2.74
3297 10607 5.222254 ACCTTATCCTCTTTGGCCTTTTACA 60.222 40.000 3.32 0.00 35.26 2.41
3298 10608 5.125578 CACCTTATCCTCTTTGGCCTTTTAC 59.874 44.000 3.32 0.00 35.26 2.01
3299 10609 5.261216 CACCTTATCCTCTTTGGCCTTTTA 58.739 41.667 3.32 0.00 35.26 1.52
3300 10610 4.089361 CACCTTATCCTCTTTGGCCTTTT 58.911 43.478 3.32 0.00 35.26 2.27
3301 10611 3.564352 CCACCTTATCCTCTTTGGCCTTT 60.564 47.826 3.32 0.00 35.26 3.11
3302 10612 2.024941 CCACCTTATCCTCTTTGGCCTT 60.025 50.000 3.32 0.00 35.26 4.35
3303 10613 1.566231 CCACCTTATCCTCTTTGGCCT 59.434 52.381 3.32 0.00 35.26 5.19
3304 10614 1.285078 ACCACCTTATCCTCTTTGGCC 59.715 52.381 0.00 0.00 35.26 5.36
3305 10615 2.369394 CACCACCTTATCCTCTTTGGC 58.631 52.381 0.00 0.00 35.26 4.52
3306 10616 2.025887 AGCACCACCTTATCCTCTTTGG 60.026 50.000 0.00 0.00 37.10 3.28
3307 10617 3.012518 CAGCACCACCTTATCCTCTTTG 58.987 50.000 0.00 0.00 0.00 2.77
3308 10618 2.644798 ACAGCACCACCTTATCCTCTTT 59.355 45.455 0.00 0.00 0.00 2.52
3309 10619 2.269940 ACAGCACCACCTTATCCTCTT 58.730 47.619 0.00 0.00 0.00 2.85
3310 10620 1.958288 ACAGCACCACCTTATCCTCT 58.042 50.000 0.00 0.00 0.00 3.69
3311 10621 2.789409 AACAGCACCACCTTATCCTC 57.211 50.000 0.00 0.00 0.00 3.71
3312 10622 4.650972 TTTAACAGCACCACCTTATCCT 57.349 40.909 0.00 0.00 0.00 3.24
3313 10623 5.715434 TTTTTAACAGCACCACCTTATCC 57.285 39.130 0.00 0.00 0.00 2.59
3334 10644 6.441088 ACTCACACCTTATCCTCTCTTTTT 57.559 37.500 0.00 0.00 0.00 1.94
3335 10645 5.336849 CGACTCACACCTTATCCTCTCTTTT 60.337 44.000 0.00 0.00 0.00 2.27
3336 10646 4.158764 CGACTCACACCTTATCCTCTCTTT 59.841 45.833 0.00 0.00 0.00 2.52
3337 10647 3.697045 CGACTCACACCTTATCCTCTCTT 59.303 47.826 0.00 0.00 0.00 2.85
3338 10648 3.283751 CGACTCACACCTTATCCTCTCT 58.716 50.000 0.00 0.00 0.00 3.10
3339 10649 3.018149 ACGACTCACACCTTATCCTCTC 58.982 50.000 0.00 0.00 0.00 3.20
3340 10650 3.018149 GACGACTCACACCTTATCCTCT 58.982 50.000 0.00 0.00 0.00 3.69
3341 10651 2.099427 GGACGACTCACACCTTATCCTC 59.901 54.545 0.00 0.00 0.00 3.71
3342 10652 2.100989 GGACGACTCACACCTTATCCT 58.899 52.381 0.00 0.00 0.00 3.24
3343 10653 2.100989 AGGACGACTCACACCTTATCC 58.899 52.381 0.00 0.00 0.00 2.59
3344 10654 3.429135 GGAAGGACGACTCACACCTTATC 60.429 52.174 0.00 0.00 41.90 1.75
3345 10655 2.496470 GGAAGGACGACTCACACCTTAT 59.504 50.000 0.00 0.00 41.90 1.73
3346 10656 1.891150 GGAAGGACGACTCACACCTTA 59.109 52.381 0.00 0.00 41.90 2.69
3347 10657 0.680061 GGAAGGACGACTCACACCTT 59.320 55.000 0.00 0.00 44.08 3.50
3348 10658 0.178958 AGGAAGGACGACTCACACCT 60.179 55.000 0.00 0.00 0.00 4.00
3349 10659 0.244178 GAGGAAGGACGACTCACACC 59.756 60.000 0.00 0.00 0.00 4.16
3350 10660 1.200484 GAGAGGAAGGACGACTCACAC 59.800 57.143 0.00 0.00 33.76 3.82
3351 10661 1.535833 GAGAGGAAGGACGACTCACA 58.464 55.000 0.00 0.00 33.76 3.58
3352 10662 0.812549 GGAGAGGAAGGACGACTCAC 59.187 60.000 0.00 0.00 33.76 3.51
3353 10663 0.323542 GGGAGAGGAAGGACGACTCA 60.324 60.000 0.00 0.00 33.76 3.41
3354 10664 1.038681 GGGGAGAGGAAGGACGACTC 61.039 65.000 0.00 0.00 0.00 3.36
3355 10665 1.000612 GGGGAGAGGAAGGACGACT 59.999 63.158 0.00 0.00 0.00 4.18
3356 10666 1.305046 TGGGGAGAGGAAGGACGAC 60.305 63.158 0.00 0.00 0.00 4.34
3357 10667 1.000486 CTGGGGAGAGGAAGGACGA 60.000 63.158 0.00 0.00 0.00 4.20
3358 10668 2.726351 GCTGGGGAGAGGAAGGACG 61.726 68.421 0.00 0.00 0.00 4.79
3359 10669 2.726351 CGCTGGGGAGAGGAAGGAC 61.726 68.421 0.00 0.00 0.00 3.85
3360 10670 2.364317 CGCTGGGGAGAGGAAGGA 60.364 66.667 0.00 0.00 0.00 3.36
3361 10671 4.168291 GCGCTGGGGAGAGGAAGG 62.168 72.222 0.00 0.00 0.00 3.46
3362 10672 4.168291 GGCGCTGGGGAGAGGAAG 62.168 72.222 7.64 0.00 0.00 3.46
3407 10717 1.702299 GTCGTCCATTGCGAACTCG 59.298 57.895 0.00 0.00 40.19 4.18
3408 10718 1.683790 CCGTCGTCCATTGCGAACTC 61.684 60.000 0.00 0.00 40.19 3.01
3409 10719 1.736645 CCGTCGTCCATTGCGAACT 60.737 57.895 0.00 0.00 40.19 3.01
3410 10720 2.776072 CCGTCGTCCATTGCGAAC 59.224 61.111 0.00 0.00 40.19 3.95
3411 10721 3.115892 GCCGTCGTCCATTGCGAA 61.116 61.111 0.00 0.00 40.19 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.