Multiple sequence alignment - TraesCS7A01G138400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G138400 chr7A 100.000 7041 0 0 1 7041 90623344 90616304 0.000000e+00 13003.0
1 TraesCS7A01G138400 chr7A 97.778 45 1 0 6895 6939 243856768 243856812 2.110000e-10 78.7
2 TraesCS7A01G138400 chr7A 95.556 45 2 0 6895 6939 96146878 96146834 9.800000e-09 73.1
3 TraesCS7A01G138400 chr7A 95.556 45 1 1 6895 6939 667988056 667988099 3.520000e-08 71.3
4 TraesCS7A01G138400 chr7D 94.324 4933 188 36 2007 6877 89603397 89598495 0.000000e+00 7474.0
5 TraesCS7A01G138400 chr7D 91.324 1314 88 20 1 1298 89605281 89603978 0.000000e+00 1772.0
6 TraesCS7A01G138400 chr7D 93.888 589 34 2 1341 1928 89603980 89603393 0.000000e+00 887.0
7 TraesCS7A01G138400 chr7D 81.818 341 30 19 6062 6397 89729944 89730257 2.520000e-64 257.0
8 TraesCS7A01G138400 chr7D 84.234 222 17 3 6666 6871 89523672 89523453 4.310000e-47 200.0
9 TraesCS7A01G138400 chr7D 80.612 196 23 7 6049 6242 89789608 89789790 3.430000e-28 137.0
10 TraesCS7A01G138400 chr7D 91.000 100 7 2 1911 2009 485090864 485090962 4.430000e-27 134.0
11 TraesCS7A01G138400 chr7D 89.524 105 9 2 1905 2009 4643975 4644077 1.590000e-26 132.0
12 TraesCS7A01G138400 chr7D 86.735 98 13 0 6944 7041 89791129 89791226 7.470000e-20 110.0
13 TraesCS7A01G138400 chr7B 95.151 3568 131 22 2007 5554 40357664 40354119 0.000000e+00 5592.0
14 TraesCS7A01G138400 chr7B 92.902 1578 82 13 354 1928 40359210 40357660 0.000000e+00 2266.0
15 TraesCS7A01G138400 chr7B 90.459 1373 82 22 5539 6874 40353936 40352576 0.000000e+00 1764.0
16 TraesCS7A01G138400 chr7B 84.098 327 15 12 17 321 40359521 40359210 1.500000e-71 281.0
17 TraesCS7A01G138400 chr7B 86.239 218 29 1 6145 6362 40557337 40557553 1.180000e-57 235.0
18 TraesCS7A01G138400 chr7B 87.755 98 12 0 6944 7041 40576158 40576255 1.600000e-21 115.0
19 TraesCS7A01G138400 chr6D 96.552 87 3 0 1925 2011 363038162 363038076 2.050000e-30 145.0
20 TraesCS7A01G138400 chr2D 95.556 90 3 1 1920 2009 378043090 378043178 7.360000e-30 143.0
21 TraesCS7A01G138400 chr2D 94.505 91 5 0 1921 2011 53145723 53145813 2.650000e-29 141.0
22 TraesCS7A01G138400 chr1D 92.079 101 7 1 1925 2024 337065273 337065173 2.650000e-29 141.0
23 TraesCS7A01G138400 chr1B 92.784 97 7 0 1918 2014 305536663 305536567 2.650000e-29 141.0
24 TraesCS7A01G138400 chr3D 93.548 93 6 0 1921 2013 526509385 526509293 9.520000e-29 139.0
25 TraesCS7A01G138400 chr3D 97.778 45 0 1 6895 6939 604567701 604567744 7.570000e-10 76.8
26 TraesCS7A01G138400 chr4D 93.478 92 6 0 1922 2013 7759970 7759879 3.430000e-28 137.0
27 TraesCS7A01G138400 chr4D 95.556 45 1 1 6895 6939 54805056 54805099 3.520000e-08 71.3
28 TraesCS7A01G138400 chrUn 87.755 98 12 0 6944 7041 91490748 91490651 1.600000e-21 115.0
29 TraesCS7A01G138400 chr5A 92.308 52 4 0 6894 6945 552510809 552510758 2.720000e-09 75.0
30 TraesCS7A01G138400 chr3A 95.652 46 2 0 6895 6940 429658821 429658866 2.720000e-09 75.0
31 TraesCS7A01G138400 chr5B 95.556 45 1 1 6895 6939 67956948 67956905 3.520000e-08 71.3
32 TraesCS7A01G138400 chr1A 95.556 45 1 1 6895 6939 64717742 64717785 3.520000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G138400 chr7A 90616304 90623344 7040 True 13003.000000 13003 100.000000 1 7041 1 chr7A.!!$R1 7040
1 TraesCS7A01G138400 chr7D 89598495 89605281 6786 True 3377.666667 7474 93.178667 1 6877 3 chr7D.!!$R2 6876
2 TraesCS7A01G138400 chr7B 40352576 40359521 6945 True 2475.750000 5592 90.652500 17 6874 4 chr7B.!!$R1 6857

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
437 486 0.247736 GCTCTGTAGGTGAGTGGTGG 59.752 60.0 0.0 0.0 34.30 4.61 F
441 490 0.396435 TGTAGGTGAGTGGTGGCTTG 59.604 55.0 0.0 0.0 0.00 4.01 F
1940 1993 0.264955 ATGTACTCCCTCCGTCCCAT 59.735 55.0 0.0 0.0 0.00 4.00 F
2433 2488 0.529773 TCATACATCGTGCCCTTCGC 60.530 55.0 0.0 0.0 38.31 4.70 F
3155 3230 0.605319 TCTTGCTTGCCAGGTAACGG 60.605 55.0 0.0 0.0 46.39 4.44 F
5090 5190 0.250295 CCGAAGTGGAACAAGAGCCA 60.250 55.0 0.0 0.0 44.16 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1595 1647 0.172803 GCCTTGCAGCAGAAATGGAG 59.827 55.000 0.00 0.00 0.00 3.86 R
1996 2049 0.324091 TCCCAAGTACTCCCTCCGTC 60.324 60.000 0.00 0.00 0.00 4.79 R
3308 3388 0.681733 AGAAACAGAGGAAGCGAGCA 59.318 50.000 0.00 0.00 0.00 4.26 R
4090 4185 1.004044 AGCTGATGAGGTTGAAGGTGG 59.996 52.381 0.00 0.00 0.00 4.61 R
5096 5196 0.397941 CTGGCTCTGGTTCTGGTTCA 59.602 55.000 0.00 0.00 0.00 3.18 R
6909 7267 0.398664 CTGGTACTCCCACCCCTAGG 60.399 65.000 0.06 0.06 38.72 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 30 2.501223 TTCCGGCTACCGTTGCTCAG 62.501 60.000 0.00 0.00 46.80 3.35
29 31 2.261671 CGGCTACCGTTGCTCAGT 59.738 61.111 4.95 0.00 42.73 3.41
221 245 1.369091 CGGGCATAGAAGTTTGCGCT 61.369 55.000 9.73 0.00 46.22 5.92
280 304 3.702048 TCCCGCTCGGTTTGGAGG 61.702 66.667 7.59 0.00 34.56 4.30
283 307 1.302192 CCGCTCGGTTTGGAGGAAA 60.302 57.895 0.00 0.00 34.56 3.13
338 362 2.469826 TCGCATGGTTATTACGCTGAG 58.530 47.619 0.00 0.00 0.00 3.35
369 393 2.743928 GGTGCAGCCTCTGTTCGG 60.744 66.667 4.03 0.00 33.43 4.30
391 415 1.471684 CATTTGTCTCAGCAGCCTTCC 59.528 52.381 0.00 0.00 0.00 3.46
413 462 1.495584 TTCTGTCGGTGTTCTTGCGC 61.496 55.000 0.00 0.00 0.00 6.09
437 486 0.247736 GCTCTGTAGGTGAGTGGTGG 59.752 60.000 0.00 0.00 34.30 4.61
441 490 0.396435 TGTAGGTGAGTGGTGGCTTG 59.604 55.000 0.00 0.00 0.00 4.01
443 492 1.127567 TAGGTGAGTGGTGGCTTGCT 61.128 55.000 0.00 0.00 0.00 3.91
444 493 2.263741 GGTGAGTGGTGGCTTGCTG 61.264 63.158 0.00 0.00 0.00 4.41
445 494 2.113774 TGAGTGGTGGCTTGCTGG 59.886 61.111 0.00 0.00 0.00 4.85
446 495 2.431683 GAGTGGTGGCTTGCTGGA 59.568 61.111 0.00 0.00 0.00 3.86
447 496 1.673665 GAGTGGTGGCTTGCTGGAG 60.674 63.158 0.00 0.00 0.00 3.86
448 497 2.116983 GAGTGGTGGCTTGCTGGAGA 62.117 60.000 0.00 0.00 0.00 3.71
449 498 1.673665 GTGGTGGCTTGCTGGAGAG 60.674 63.158 0.00 0.00 0.00 3.20
452 501 1.376553 GTGGCTTGCTGGAGAGTCC 60.377 63.158 0.00 0.00 36.96 3.85
473 522 1.228063 CCGGAGATGGGCCTTGATG 60.228 63.158 4.53 0.00 0.00 3.07
482 531 1.988107 TGGGCCTTGATGGATAGGATC 59.012 52.381 4.53 0.00 38.35 3.36
514 563 2.040412 ACCACTTTCTCTCCCACCAATC 59.960 50.000 0.00 0.00 0.00 2.67
519 568 2.856760 TCTCTCCCACCAATCTAGCT 57.143 50.000 0.00 0.00 0.00 3.32
527 576 4.019174 CCCACCAATCTAGCTCAATTGTT 58.981 43.478 15.87 3.57 32.20 2.83
564 613 1.177401 GGAGTTCACTTTGGCATCCC 58.823 55.000 0.00 0.00 0.00 3.85
618 667 0.874390 TGCGTCAGAGATTTTGGTGC 59.126 50.000 0.00 0.00 0.00 5.01
623 672 1.879380 TCAGAGATTTTGGTGCCGTTG 59.121 47.619 0.00 0.00 0.00 4.10
633 682 4.966787 TGCCGTTGGTTCCCCTGC 62.967 66.667 0.00 0.00 0.00 4.85
634 683 4.660938 GCCGTTGGTTCCCCTGCT 62.661 66.667 0.00 0.00 0.00 4.24
678 727 0.887933 TTTGGATCCGCTTTCTTGGC 59.112 50.000 7.39 0.00 0.00 4.52
705 755 2.094182 TCTTCTGGATCCGTTGCTGTAC 60.094 50.000 7.39 0.00 0.00 2.90
896 947 6.515531 GCATTGTCTGGTTCATTCTGAGAAAA 60.516 38.462 0.00 0.00 0.00 2.29
944 995 3.125829 CGCACATCTCATTTACACTGCTT 59.874 43.478 0.00 0.00 0.00 3.91
1121 1172 0.740737 GGGCCACTTTCATGATTCCG 59.259 55.000 4.39 0.00 0.00 4.30
1138 1189 4.497473 TTCCGTTGGATGTTGAATTGTC 57.503 40.909 0.00 0.00 0.00 3.18
1154 1205 7.523293 TGAATTGTCTTTGAAGCTTTCCATA 57.477 32.000 0.00 0.00 0.00 2.74
1194 1245 1.598962 TGCTTCACTCACTGCTGGC 60.599 57.895 0.00 0.00 0.00 4.85
1196 1247 1.297456 GCTTCACTCACTGCTGGCTC 61.297 60.000 0.00 0.00 0.00 4.70
1268 1319 1.363807 CCATAGCGAGCGTCCATCA 59.636 57.895 0.00 0.00 0.00 3.07
1321 1372 4.003648 CCACATCTCTTAGTTGAACCACC 58.996 47.826 0.00 0.00 0.00 4.61
1324 1375 5.707298 CACATCTCTTAGTTGAACCACCATT 59.293 40.000 0.00 0.00 0.00 3.16
1325 1376 6.878923 CACATCTCTTAGTTGAACCACCATTA 59.121 38.462 0.00 0.00 0.00 1.90
1326 1377 6.879458 ACATCTCTTAGTTGAACCACCATTAC 59.121 38.462 0.00 0.00 0.00 1.89
1349 1400 2.535732 GCGAACTGAGCGTTTCATCATC 60.536 50.000 0.00 0.00 35.56 2.92
1395 1446 5.964887 TTTGTAAAAAGTTGAGCATGTGC 57.035 34.783 0.00 0.00 42.49 4.57
1456 1507 3.758300 ACGAAAAACACTGTTCTGCTTG 58.242 40.909 0.00 0.00 0.00 4.01
1482 1533 4.850859 TTCATTCGCTTACGGTTACATG 57.149 40.909 0.00 0.00 40.63 3.21
1501 1552 4.527816 ACATGCATTTGTCCTGGTATTTGT 59.472 37.500 0.00 0.00 0.00 2.83
1533 1584 4.278058 GCGCTAATTTTCTCTCTGATTGC 58.722 43.478 0.00 0.00 0.00 3.56
1543 1594 5.933187 TCTCTCTGATTGCGAGTAGATAC 57.067 43.478 0.00 0.00 0.00 2.24
1563 1614 2.890945 ACCTTTTACAACTGCCATCACC 59.109 45.455 0.00 0.00 0.00 4.02
1586 1638 4.925054 CCACATGTTTATTGGTTTGCAGAG 59.075 41.667 0.00 0.00 0.00 3.35
1595 1647 4.853924 TTGGTTTGCAGAGATTTTCCTC 57.146 40.909 0.00 0.00 0.00 3.71
1664 1716 0.590230 CTCTAGCGAGGCGTCTTTCG 60.590 60.000 4.69 0.00 43.12 3.46
1727 1779 7.415592 TTTATGATGGTCAAATACAATGCCA 57.584 32.000 0.00 0.00 0.00 4.92
1729 1781 5.936187 TGATGGTCAAATACAATGCCATT 57.064 34.783 0.00 0.00 35.93 3.16
1751 1803 9.480053 CCATTGTCTTTGTTTTCTTATGATTGT 57.520 29.630 0.00 0.00 0.00 2.71
1852 1905 8.684386 TGTAAACTTTGTGATGTTCATAAGGA 57.316 30.769 3.73 0.00 31.02 3.36
1853 1906 8.564574 TGTAAACTTTGTGATGTTCATAAGGAC 58.435 33.333 3.73 2.50 31.02 3.85
1861 1914 6.597672 TGTGATGTTCATAAGGACATGGTAAC 59.402 38.462 0.00 0.00 0.00 2.50
1930 1983 9.391006 TCAAATTTTGTACTGATATGTACTCCC 57.609 33.333 8.89 0.00 42.22 4.30
1931 1984 9.396022 CAAATTTTGTACTGATATGTACTCCCT 57.604 33.333 0.78 0.00 42.22 4.20
1932 1985 9.614792 AAATTTTGTACTGATATGTACTCCCTC 57.385 33.333 6.41 0.00 42.22 4.30
1933 1986 6.726490 TTTGTACTGATATGTACTCCCTCC 57.274 41.667 6.41 0.00 42.22 4.30
1934 1987 4.395625 TGTACTGATATGTACTCCCTCCG 58.604 47.826 6.41 0.00 42.22 4.63
1935 1988 3.596940 ACTGATATGTACTCCCTCCGT 57.403 47.619 0.00 0.00 0.00 4.69
1936 1989 3.488363 ACTGATATGTACTCCCTCCGTC 58.512 50.000 0.00 0.00 0.00 4.79
1937 1990 2.820787 CTGATATGTACTCCCTCCGTCC 59.179 54.545 0.00 0.00 0.00 4.79
1938 1991 2.169330 GATATGTACTCCCTCCGTCCC 58.831 57.143 0.00 0.00 0.00 4.46
1939 1992 0.928505 TATGTACTCCCTCCGTCCCA 59.071 55.000 0.00 0.00 0.00 4.37
1940 1993 0.264955 ATGTACTCCCTCCGTCCCAT 59.735 55.000 0.00 0.00 0.00 4.00
1941 1994 0.928505 TGTACTCCCTCCGTCCCATA 59.071 55.000 0.00 0.00 0.00 2.74
1942 1995 1.288633 TGTACTCCCTCCGTCCCATAA 59.711 52.381 0.00 0.00 0.00 1.90
1943 1996 2.090943 TGTACTCCCTCCGTCCCATAAT 60.091 50.000 0.00 0.00 0.00 1.28
1944 1997 3.140707 TGTACTCCCTCCGTCCCATAATA 59.859 47.826 0.00 0.00 0.00 0.98
1945 1998 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
1946 1999 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
1947 2000 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
1948 2001 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
1949 2002 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
1950 2003 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
1951 2004 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
1952 2005 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
1953 2006 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
1954 2007 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
1955 2008 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
1956 2009 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
1957 2010 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
1982 2035 6.701432 ACACTACACTAGTATTGAAAACGC 57.299 37.500 0.00 0.00 37.23 4.84
1983 2036 6.453092 ACACTACACTAGTATTGAAAACGCT 58.547 36.000 0.00 0.00 37.23 5.07
1984 2037 6.585322 ACACTACACTAGTATTGAAAACGCTC 59.415 38.462 0.00 0.00 37.23 5.03
1985 2038 6.807230 CACTACACTAGTATTGAAAACGCTCT 59.193 38.462 0.00 0.00 37.23 4.09
1986 2039 7.328737 CACTACACTAGTATTGAAAACGCTCTT 59.671 37.037 0.00 0.00 37.23 2.85
1987 2040 6.467723 ACACTAGTATTGAAAACGCTCTTG 57.532 37.500 0.00 0.00 0.00 3.02
1988 2041 5.989777 ACACTAGTATTGAAAACGCTCTTGT 59.010 36.000 0.00 0.00 0.00 3.16
1989 2042 7.149973 ACACTAGTATTGAAAACGCTCTTGTA 58.850 34.615 0.00 0.00 0.00 2.41
1990 2043 7.817962 ACACTAGTATTGAAAACGCTCTTGTAT 59.182 33.333 0.00 0.00 0.00 2.29
1991 2044 8.656849 CACTAGTATTGAAAACGCTCTTGTATT 58.343 33.333 0.00 0.00 0.00 1.89
1992 2045 9.865321 ACTAGTATTGAAAACGCTCTTGTATTA 57.135 29.630 0.00 0.00 0.00 0.98
1995 2048 8.612619 AGTATTGAAAACGCTCTTGTATTATGG 58.387 33.333 0.00 0.00 0.00 2.74
1996 2049 5.811399 TGAAAACGCTCTTGTATTATGGG 57.189 39.130 0.00 0.00 0.00 4.00
1997 2050 5.492895 TGAAAACGCTCTTGTATTATGGGA 58.507 37.500 0.00 0.00 0.00 4.37
1998 2051 5.353123 TGAAAACGCTCTTGTATTATGGGAC 59.647 40.000 0.00 0.00 0.00 4.46
1999 2052 3.093717 ACGCTCTTGTATTATGGGACG 57.906 47.619 0.00 0.00 0.00 4.79
2000 2053 2.223971 ACGCTCTTGTATTATGGGACGG 60.224 50.000 0.00 0.00 0.00 4.79
2001 2054 2.035449 CGCTCTTGTATTATGGGACGGA 59.965 50.000 0.00 0.00 0.00 4.69
2002 2055 3.654414 GCTCTTGTATTATGGGACGGAG 58.346 50.000 0.00 0.00 0.00 4.63
2003 2056 3.555168 GCTCTTGTATTATGGGACGGAGG 60.555 52.174 0.00 0.00 0.00 4.30
2004 2057 2.969950 TCTTGTATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
2005 2058 2.779429 TGTATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
2006 2059 2.605257 TGTATTATGGGACGGAGGGAG 58.395 52.381 0.00 0.00 0.00 4.30
2007 2060 2.090943 TGTATTATGGGACGGAGGGAGT 60.091 50.000 0.00 0.00 0.00 3.85
2008 2061 3.140707 TGTATTATGGGACGGAGGGAGTA 59.859 47.826 0.00 0.00 0.00 2.59
2009 2062 2.077687 TTATGGGACGGAGGGAGTAC 57.922 55.000 0.00 0.00 0.00 2.73
2010 2063 1.229131 TATGGGACGGAGGGAGTACT 58.771 55.000 0.00 0.00 0.00 2.73
2034 2087 2.358090 GGATGGGATGGATGGTTTGTCA 60.358 50.000 0.00 0.00 0.00 3.58
2035 2088 2.988636 TGGGATGGATGGTTTGTCAA 57.011 45.000 0.00 0.00 0.00 3.18
2098 2151 6.822667 ATGCAAAATGATTCTCTGTACACA 57.177 33.333 0.00 0.00 0.00 3.72
2313 2366 3.855668 TGAATGGTGGATGGTTTCCTTT 58.144 40.909 0.00 0.00 45.68 3.11
2314 2367 4.230455 TGAATGGTGGATGGTTTCCTTTT 58.770 39.130 0.00 0.00 45.68 2.27
2397 2452 4.638421 TGGTTATTTATTCCTCAGGTTGCG 59.362 41.667 0.00 0.00 0.00 4.85
2433 2488 0.529773 TCATACATCGTGCCCTTCGC 60.530 55.000 0.00 0.00 38.31 4.70
2451 2506 0.872388 GCGAAGTTGATCCCACGTTT 59.128 50.000 0.00 0.00 0.00 3.60
2546 2601 5.763876 AGTTCAGGAGGTACTAATTGCTT 57.236 39.130 0.00 0.00 41.55 3.91
2553 2608 6.313905 CAGGAGGTACTAATTGCTTGTAGTTG 59.686 42.308 0.00 0.00 41.55 3.16
2560 2622 9.968743 GTACTAATTGCTTGTAGTTGTGTTATC 57.031 33.333 0.00 0.00 32.79 1.75
2561 2623 8.615878 ACTAATTGCTTGTAGTTGTGTTATCA 57.384 30.769 0.00 0.00 0.00 2.15
2562 2624 8.504005 ACTAATTGCTTGTAGTTGTGTTATCAC 58.496 33.333 0.00 0.00 44.08 3.06
2563 2625 5.682943 TTGCTTGTAGTTGTGTTATCACC 57.317 39.130 1.53 0.00 43.26 4.02
2564 2626 3.743911 TGCTTGTAGTTGTGTTATCACCG 59.256 43.478 1.53 0.00 43.26 4.94
2565 2627 3.124636 GCTTGTAGTTGTGTTATCACCGG 59.875 47.826 0.00 0.00 43.26 5.28
2566 2628 4.312443 CTTGTAGTTGTGTTATCACCGGT 58.688 43.478 0.00 0.00 43.26 5.28
2572 2634 0.671163 GTGTTATCACCGGTGCCGAA 60.671 55.000 30.25 19.05 38.51 4.30
2751 2823 3.119291 GCTGAAGTATGATGTGGAGTCG 58.881 50.000 0.00 0.00 0.00 4.18
2851 2924 6.647334 TCCTCTTAACTGCATCTATGAGAG 57.353 41.667 14.74 10.36 0.00 3.20
2854 2927 6.922957 CCTCTTAACTGCATCTATGAGAGTTC 59.077 42.308 14.74 0.00 35.22 3.01
2946 3019 6.033966 TCAATGCATAATAGATAGTACGCCG 58.966 40.000 0.00 0.00 0.00 6.46
2947 3020 5.830000 ATGCATAATAGATAGTACGCCGA 57.170 39.130 0.00 0.00 0.00 5.54
3028 3103 8.731605 TGTTTGTGTTACAATAGTTCAGTTTCA 58.268 29.630 0.00 0.00 38.00 2.69
3103 3178 3.045601 ACTGTTGGTGTGCTAGATCAC 57.954 47.619 0.00 1.35 37.48 3.06
3155 3230 0.605319 TCTTGCTTGCCAGGTAACGG 60.605 55.000 0.00 0.00 46.39 4.44
3174 3249 3.996825 GCTATTTGCCGACCACAAG 57.003 52.632 0.00 0.00 35.15 3.16
3182 3257 2.489971 TGCCGACCACAAGTTCTTTAG 58.510 47.619 0.00 0.00 0.00 1.85
3307 3387 5.054477 GCGCTTTCAATGGTAAGTAGGATA 58.946 41.667 0.00 0.00 0.00 2.59
3308 3388 5.701290 GCGCTTTCAATGGTAAGTAGGATAT 59.299 40.000 0.00 0.00 0.00 1.63
3353 3433 3.452755 TGAGATGTCACACGTGTTTCT 57.547 42.857 20.79 17.75 0.00 2.52
3564 3644 8.992073 GCTATTTTTATTATTTTGCCCATCCAG 58.008 33.333 0.00 0.00 0.00 3.86
3664 3744 5.411669 AGAGCAACTAACCAGGTAAAATTCG 59.588 40.000 0.00 0.00 0.00 3.34
3683 3763 2.427453 TCGTATCCCTTCTCTGTTGCTC 59.573 50.000 0.00 0.00 0.00 4.26
3688 3768 1.649664 CCTTCTCTGTTGCTCATCCG 58.350 55.000 0.00 0.00 0.00 4.18
3752 3832 9.830975 AGCAACACAACTAAAATTCCTTTTATT 57.169 25.926 0.00 0.00 36.49 1.40
3778 3858 6.764308 ATGAACATAACTCAACATCCTTGG 57.236 37.500 0.00 0.00 0.00 3.61
3806 3886 8.592998 CGTATAAAGTGAACTTGGTTATCTGTC 58.407 37.037 0.00 0.00 36.12 3.51
3926 4009 3.951563 AAATCTTAGGGCAGCCATGTA 57.048 42.857 15.19 0.00 0.00 2.29
3964 4047 8.358895 GCTATTGCTGCTCTATATGATATCTCA 58.641 37.037 3.98 0.00 36.03 3.27
4090 4185 7.671495 AAACCCATCATAAAAGCATGTTTTC 57.329 32.000 8.06 0.00 0.00 2.29
4092 4187 5.248020 ACCCATCATAAAAGCATGTTTTCCA 59.752 36.000 8.06 0.27 0.00 3.53
4132 4227 5.623824 GCTCCACTGATGCTGATTGATTTTT 60.624 40.000 0.00 0.00 0.00 1.94
4337 4432 6.033341 TCTTGAAAATTGAACAGGTTCGTTG 58.967 36.000 7.58 0.00 42.28 4.10
4384 4479 6.491745 TGGTATCTGTTTTCCATGTTAGCAAA 59.508 34.615 0.00 0.00 0.00 3.68
4404 4499 3.330275 GCTGACAGCGTTCCGTTT 58.670 55.556 12.53 0.00 0.00 3.60
4459 4554 6.126796 TGCAAACTATGGAGGAATATGTGAGA 60.127 38.462 0.00 0.00 0.00 3.27
4496 4591 5.001232 TGAAAGATAAGGTTCGGAAACTGG 58.999 41.667 9.43 0.00 35.61 4.00
4526 4621 7.138054 ACCAGAACTTTGTTATAGATAGGGG 57.862 40.000 0.00 0.00 0.00 4.79
4663 4759 4.010349 ACTTTGTTATCTGGGTTGCTAGC 58.990 43.478 8.10 8.10 0.00 3.42
4723 4819 3.069079 AGTGTCTGTTAGAGCCGAGTA 57.931 47.619 0.00 0.00 0.00 2.59
4772 4868 6.509418 TTAATGTTCTGTATGCTGGTTTCC 57.491 37.500 0.00 0.00 0.00 3.13
4849 4947 5.993441 TGATTAGCATGATCAGGTATGTGTG 59.007 40.000 9.42 0.00 0.00 3.82
4850 4948 3.920231 AGCATGATCAGGTATGTGTGT 57.080 42.857 9.42 0.00 0.00 3.72
4951 5051 9.880157 ATTTCCTTTTCATGATTTTCCTATGTG 57.120 29.630 0.00 0.00 0.00 3.21
5048 5148 0.402121 AGGAGGAAGTCAAGCCAACC 59.598 55.000 0.00 0.00 0.00 3.77
5054 5154 0.550914 AAGTCAAGCCAACCTCACCA 59.449 50.000 0.00 0.00 0.00 4.17
5069 5169 0.320771 CACCACCTCCGGTTTCAGAG 60.321 60.000 0.00 0.00 37.07 3.35
5090 5190 0.250295 CCGAAGTGGAACAAGAGCCA 60.250 55.000 0.00 0.00 44.16 4.75
5096 5196 1.130054 TGGAACAAGAGCCAGAGCCT 61.130 55.000 0.00 0.00 35.11 4.58
5404 5509 4.159506 GGTCAATGCACAGCCCTTAATTTA 59.840 41.667 0.00 0.00 0.00 1.40
5411 5516 6.763355 TGCACAGCCCTTAATTTATTTTTGA 58.237 32.000 0.00 0.00 0.00 2.69
5414 5519 7.548780 GCACAGCCCTTAATTTATTTTTGATCA 59.451 33.333 0.00 0.00 0.00 2.92
5564 5867 9.884465 GATACATTTTCCTATAGATGCAACAAC 57.116 33.333 0.00 0.00 0.00 3.32
5610 5918 6.833041 TCCTTTGGTCATACTAAACTTGACA 58.167 36.000 4.85 0.00 41.17 3.58
5788 6096 1.477553 TCTACGGCTCAAACGGGTAT 58.522 50.000 0.00 0.00 35.23 2.73
5971 6279 2.044352 GGCGCCCAACACCCTTAT 60.044 61.111 18.11 0.00 0.00 1.73
5974 6282 2.414785 CGCCCAACACCCTTATGGC 61.415 63.158 0.00 0.00 37.83 4.40
6007 6315 4.195334 ATGATGCCCCTCCACGCC 62.195 66.667 0.00 0.00 0.00 5.68
6066 6374 5.281727 GGTGGTTCACAGATGAAAACTTTC 58.718 41.667 0.38 0.00 46.40 2.62
6390 6699 1.408702 TGTTTTGCCTCTTGTTGCTCC 59.591 47.619 0.00 0.00 0.00 4.70
6461 6770 3.763097 TCATTTGTGGATTTGCTAGCG 57.237 42.857 10.77 0.00 0.00 4.26
6549 6858 7.376601 GCAACATTGGATTGATTTTGTTTTCAC 59.623 33.333 0.00 0.00 0.00 3.18
6594 6903 4.127171 ACTAACAGTTTTCGATGTGCACT 58.873 39.130 19.41 3.19 0.00 4.40
6682 7004 7.716123 ACAAATGATTCTTTTTGCAAGATTGGA 59.284 29.630 0.00 0.00 36.51 3.53
6690 7012 5.787953 TTTTGCAAGATTGGATTGTCTCA 57.212 34.783 0.00 0.00 0.00 3.27
6711 7033 8.784043 GTCTCATTTTTGTGAGTATTAACCTGT 58.216 33.333 4.07 0.00 44.66 4.00
6742 7080 4.471904 TGCTAACTACAATGCTAGTGCT 57.528 40.909 0.00 0.00 40.48 4.40
6744 7082 5.245531 TGCTAACTACAATGCTAGTGCTTT 58.754 37.500 0.00 0.00 40.48 3.51
6745 7083 6.403049 TGCTAACTACAATGCTAGTGCTTTA 58.597 36.000 0.00 0.00 40.48 1.85
6758 7096 6.710295 TGCTAGTGCTTTATTTCTGTCTTTGA 59.290 34.615 0.00 0.00 40.48 2.69
6772 7117 9.996554 TTTCTGTCTTTGAAACTCATACATCTA 57.003 29.630 0.00 0.00 0.00 1.98
6795 7140 9.277783 TCTACTATTATGTAGTCCTACGGAAAC 57.722 37.037 0.00 0.00 40.39 2.78
6846 7198 7.431249 ACATGAACGTAGTAAGAAAGAAGACA 58.569 34.615 0.00 0.00 45.00 3.41
6847 7199 8.088981 ACATGAACGTAGTAAGAAAGAAGACAT 58.911 33.333 0.00 0.00 45.00 3.06
6894 7252 8.877864 ATACTAATTGACTCCCATCTCTAGAG 57.122 38.462 13.98 13.98 0.00 2.43
6895 7253 6.916909 ACTAATTGACTCCCATCTCTAGAGA 58.083 40.000 24.36 24.36 42.37 3.10
6896 7254 7.004086 ACTAATTGACTCCCATCTCTAGAGAG 58.996 42.308 25.86 17.37 41.33 3.20
6897 7255 3.222173 TGACTCCCATCTCTAGAGAGC 57.778 52.381 25.86 10.49 41.33 4.09
6898 7256 2.511637 TGACTCCCATCTCTAGAGAGCA 59.488 50.000 25.86 12.56 41.33 4.26
6899 7257 3.139957 TGACTCCCATCTCTAGAGAGCAT 59.860 47.826 25.86 8.48 41.33 3.79
6900 7258 4.151883 GACTCCCATCTCTAGAGAGCATT 58.848 47.826 25.86 8.12 41.33 3.56
6901 7259 3.896888 ACTCCCATCTCTAGAGAGCATTG 59.103 47.826 25.86 18.65 41.33 2.82
6902 7260 3.237746 TCCCATCTCTAGAGAGCATTGG 58.762 50.000 25.86 25.11 41.33 3.16
6903 7261 2.302445 CCCATCTCTAGAGAGCATTGGG 59.698 54.545 31.26 31.26 43.43 4.12
6904 7262 3.237746 CCATCTCTAGAGAGCATTGGGA 58.762 50.000 25.86 1.91 41.33 4.37
6905 7263 3.258872 CCATCTCTAGAGAGCATTGGGAG 59.741 52.174 25.86 5.30 41.33 4.30
6906 7264 2.315176 TCTCTAGAGAGCATTGGGAGC 58.685 52.381 18.76 0.00 41.80 4.70
6907 7265 2.037901 CTCTAGAGAGCATTGGGAGCA 58.962 52.381 15.05 0.00 35.13 4.26
6908 7266 1.759445 TCTAGAGAGCATTGGGAGCAC 59.241 52.381 0.00 0.00 0.00 4.40
6909 7267 0.833287 TAGAGAGCATTGGGAGCACC 59.167 55.000 0.00 0.00 40.81 5.01
6926 7284 4.722389 CCTAGGGGTGGGAGTACC 57.278 66.667 0.00 0.00 40.10 3.34
6939 7297 5.633473 TGGGAGTACCAGATATTATCCCT 57.367 43.478 11.18 0.00 46.80 4.20
6940 7298 5.989717 TGGGAGTACCAGATATTATCCCTT 58.010 41.667 11.18 0.00 46.80 3.95
6941 7299 5.785423 TGGGAGTACCAGATATTATCCCTTG 59.215 44.000 11.18 0.00 46.80 3.61
6942 7300 5.189934 GGGAGTACCAGATATTATCCCTTGG 59.810 48.000 8.27 8.27 41.46 3.61
6943 7301 5.189934 GGAGTACCAGATATTATCCCTTGGG 59.810 48.000 12.57 0.00 35.97 4.12
6944 7302 5.738401 AGTACCAGATATTATCCCTTGGGT 58.262 41.667 12.57 9.53 0.00 4.51
6945 7303 5.785940 AGTACCAGATATTATCCCTTGGGTC 59.214 44.000 12.57 6.99 0.00 4.46
6946 7304 3.583086 ACCAGATATTATCCCTTGGGTCG 59.417 47.826 12.57 0.00 0.00 4.79
6947 7305 3.055094 CCAGATATTATCCCTTGGGTCGG 60.055 52.174 5.51 0.00 0.00 4.79
6948 7306 3.055094 CAGATATTATCCCTTGGGTCGGG 60.055 52.174 5.51 0.00 43.38 5.14
6949 7307 1.737199 TATTATCCCTTGGGTCGGGG 58.263 55.000 5.51 0.00 42.23 5.73
6950 7308 0.328158 ATTATCCCTTGGGTCGGGGT 60.328 55.000 5.51 0.00 43.00 4.95
6951 7309 0.550638 TTATCCCTTGGGTCGGGGTT 60.551 55.000 5.51 0.00 43.00 4.11
6952 7310 1.276140 TATCCCTTGGGTCGGGGTTG 61.276 60.000 5.51 0.00 43.00 3.77
6953 7311 3.576259 CCCTTGGGTCGGGGTTGT 61.576 66.667 0.00 0.00 38.08 3.32
6954 7312 2.282180 CCTTGGGTCGGGGTTGTG 60.282 66.667 0.00 0.00 0.00 3.33
6955 7313 2.282180 CTTGGGTCGGGGTTGTGG 60.282 66.667 0.00 0.00 0.00 4.17
6956 7314 3.860930 CTTGGGTCGGGGTTGTGGG 62.861 68.421 0.00 0.00 0.00 4.61
6958 7316 4.653888 GGGTCGGGGTTGTGGGTG 62.654 72.222 0.00 0.00 0.00 4.61
6959 7317 3.881104 GGTCGGGGTTGTGGGTGT 61.881 66.667 0.00 0.00 0.00 4.16
6960 7318 2.518709 GGTCGGGGTTGTGGGTGTA 61.519 63.158 0.00 0.00 0.00 2.90
6961 7319 1.301953 GTCGGGGTTGTGGGTGTAC 60.302 63.158 0.00 0.00 0.00 2.90
6962 7320 2.357760 CGGGGTTGTGGGTGTACG 60.358 66.667 0.00 0.00 0.00 3.67
6963 7321 2.831043 GGGGTTGTGGGTGTACGT 59.169 61.111 0.00 0.00 0.00 3.57
6964 7322 1.598685 GGGGTTGTGGGTGTACGTG 60.599 63.158 0.00 0.00 0.00 4.49
6965 7323 1.598685 GGGTTGTGGGTGTACGTGG 60.599 63.158 0.00 0.00 0.00 4.94
6966 7324 1.446791 GGTTGTGGGTGTACGTGGA 59.553 57.895 0.00 0.00 0.00 4.02
6967 7325 0.881600 GGTTGTGGGTGTACGTGGAC 60.882 60.000 0.00 0.00 0.00 4.02
6968 7326 0.881600 GTTGTGGGTGTACGTGGACC 60.882 60.000 0.00 3.48 0.00 4.46
6969 7327 1.335882 TTGTGGGTGTACGTGGACCA 61.336 55.000 16.96 9.04 33.48 4.02
6970 7328 1.005394 GTGGGTGTACGTGGACCAG 60.005 63.158 16.96 0.00 33.48 4.00
6971 7329 1.152504 TGGGTGTACGTGGACCAGA 60.153 57.895 16.96 3.29 33.48 3.86
6972 7330 1.291272 GGGTGTACGTGGACCAGAC 59.709 63.158 16.96 0.00 33.48 3.51
6973 7331 1.080974 GGTGTACGTGGACCAGACG 60.081 63.158 11.81 0.00 42.62 4.18
6974 7332 1.731969 GTGTACGTGGACCAGACGC 60.732 63.158 0.00 0.00 40.56 5.19
6975 7333 2.194889 TGTACGTGGACCAGACGCA 61.195 57.895 0.00 0.00 40.56 5.24
6976 7334 1.731969 GTACGTGGACCAGACGCAC 60.732 63.158 0.00 0.00 40.56 5.34
6977 7335 3.258070 TACGTGGACCAGACGCACG 62.258 63.158 0.00 0.00 40.56 5.34
6991 7349 4.147322 CACGCGTCGCCATTCCAC 62.147 66.667 9.86 0.00 0.00 4.02
6992 7350 4.373116 ACGCGTCGCCATTCCACT 62.373 61.111 5.58 0.00 0.00 4.00
6993 7351 3.118454 CGCGTCGCCATTCCACTT 61.118 61.111 12.44 0.00 0.00 3.16
6994 7352 2.785258 GCGTCGCCATTCCACTTC 59.215 61.111 5.75 0.00 0.00 3.01
6995 7353 2.032634 GCGTCGCCATTCCACTTCA 61.033 57.895 5.75 0.00 0.00 3.02
6996 7354 1.970917 GCGTCGCCATTCCACTTCAG 61.971 60.000 5.75 0.00 0.00 3.02
6997 7355 1.796796 GTCGCCATTCCACTTCAGC 59.203 57.895 0.00 0.00 0.00 4.26
6998 7356 0.955428 GTCGCCATTCCACTTCAGCA 60.955 55.000 0.00 0.00 0.00 4.41
6999 7357 0.955428 TCGCCATTCCACTTCAGCAC 60.955 55.000 0.00 0.00 0.00 4.40
7000 7358 1.503542 GCCATTCCACTTCAGCACG 59.496 57.895 0.00 0.00 0.00 5.34
7001 7359 1.503542 CCATTCCACTTCAGCACGC 59.496 57.895 0.00 0.00 0.00 5.34
7002 7360 1.133253 CATTCCACTTCAGCACGCG 59.867 57.895 3.53 3.53 0.00 6.01
7003 7361 2.034879 ATTCCACTTCAGCACGCGG 61.035 57.895 12.47 0.00 0.00 6.46
7025 7383 3.675485 CGGACACGATGCTGTACG 58.325 61.111 0.00 0.00 41.93 3.67
7026 7384 1.872234 CGGACACGATGCTGTACGG 60.872 63.158 0.63 0.00 43.62 4.02
7027 7385 1.518572 GGACACGATGCTGTACGGG 60.519 63.158 3.34 0.00 38.94 5.28
7028 7386 2.125673 ACACGATGCTGTACGGGC 60.126 61.111 3.34 3.73 36.31 6.13
7029 7387 2.890474 CACGATGCTGTACGGGCC 60.890 66.667 3.34 0.00 0.00 5.80
7030 7388 4.508128 ACGATGCTGTACGGGCCG 62.508 66.667 27.06 27.06 0.00 6.13
7031 7389 4.508128 CGATGCTGTACGGGCCGT 62.508 66.667 35.91 35.91 44.35 5.68
7032 7390 2.890474 GATGCTGTACGGGCCGTG 60.890 66.667 39.80 24.97 41.39 4.94
7033 7391 4.467084 ATGCTGTACGGGCCGTGG 62.467 66.667 39.80 27.99 41.39 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 30 0.243636 CGCAAAACCAGGGATCCAAC 59.756 55.000 15.23 0.00 0.00 3.77
29 31 0.897863 CCGCAAAACCAGGGATCCAA 60.898 55.000 15.23 0.00 0.00 3.53
221 245 1.607612 GGATTCTCCGGGGAAAGCA 59.392 57.895 23.21 0.00 0.00 3.91
280 304 0.107945 AGGAGCCGAGCTGATGTTTC 60.108 55.000 2.98 0.00 39.88 2.78
283 307 1.381056 AGAGGAGCCGAGCTGATGT 60.381 57.895 2.98 0.00 39.88 3.06
338 362 0.811219 TGCACCGATGATACTGCTGC 60.811 55.000 0.00 0.00 0.00 5.25
342 366 0.105593 AGGCTGCACCGATGATACTG 59.894 55.000 0.50 0.00 46.52 2.74
369 393 0.964358 AGGCTGCTGAGACAAATGGC 60.964 55.000 0.00 0.00 0.00 4.40
391 415 0.508641 CAAGAACACCGACAGAAGCG 59.491 55.000 0.00 0.00 0.00 4.68
413 462 2.094286 CCACTCACCTACAGAGCAGAAG 60.094 54.545 0.00 0.00 36.58 2.85
437 486 1.744741 GCAGGACTCTCCAGCAAGC 60.745 63.158 1.02 0.00 46.83 4.01
441 490 4.154347 CCGGCAGGACTCTCCAGC 62.154 72.222 0.00 0.00 46.89 4.85
443 492 2.230189 ATCTCCGGCAGGACTCTCCA 62.230 60.000 0.00 0.00 42.75 3.86
444 493 1.456705 ATCTCCGGCAGGACTCTCC 60.457 63.158 0.00 0.00 42.75 3.71
445 494 1.739049 CATCTCCGGCAGGACTCTC 59.261 63.158 0.00 0.00 42.75 3.20
446 495 1.760086 CCATCTCCGGCAGGACTCT 60.760 63.158 0.00 0.00 42.75 3.24
447 496 2.801631 CCCATCTCCGGCAGGACTC 61.802 68.421 0.00 0.00 42.75 3.36
448 497 2.765807 CCCATCTCCGGCAGGACT 60.766 66.667 0.00 0.00 42.75 3.85
449 498 4.554036 GCCCATCTCCGGCAGGAC 62.554 72.222 0.00 0.00 46.27 3.85
487 536 1.552792 GGGAGAGAAAGTGGTCAGGAG 59.447 57.143 0.00 0.00 0.00 3.69
514 563 4.754372 TTGTGCAGAACAATTGAGCTAG 57.246 40.909 13.59 5.25 43.96 3.42
527 576 1.621317 TCCACCGAATACTTGTGCAGA 59.379 47.619 0.00 0.00 0.00 4.26
564 613 1.065102 TCCGCGAGATAAAGAGGAACG 59.935 52.381 8.23 0.00 33.48 3.95
633 682 0.519077 GCAAACAGAAGAGGGCGAAG 59.481 55.000 0.00 0.00 0.00 3.79
634 683 0.179032 TGCAAACAGAAGAGGGCGAA 60.179 50.000 0.00 0.00 0.00 4.70
678 727 3.119291 CAACGGATCCAGAAGAAGATCG 58.881 50.000 13.41 0.00 39.88 3.69
705 755 4.400845 CAAGAACACGCAAGATCAATCAG 58.599 43.478 0.00 0.00 43.62 2.90
896 947 2.029110 ACGCAAGCCAAATAAATGCTGT 60.029 40.909 0.00 0.00 45.62 4.40
1121 1172 6.074142 GCTTCAAAGACAATTCAACATCCAAC 60.074 38.462 0.00 0.00 0.00 3.77
1138 1189 7.381323 AGGTTCAAATATGGAAAGCTTCAAAG 58.619 34.615 0.00 0.00 0.00 2.77
1154 1205 2.427506 GACGGAAGCAGAGGTTCAAAT 58.572 47.619 10.60 0.00 41.18 2.32
1194 1245 0.613260 TGTCCCGGAGAAATGGTGAG 59.387 55.000 0.73 0.00 0.00 3.51
1196 1247 1.165270 GTTGTCCCGGAGAAATGGTG 58.835 55.000 0.73 0.00 0.00 4.17
1220 1271 2.728690 TCACAATTGCAATGTCCAGC 57.271 45.000 13.82 0.00 0.00 4.85
1268 1319 7.071321 CCATTACCTCTTATGTACTTCTCCCTT 59.929 40.741 0.00 0.00 0.00 3.95
1299 1350 4.003648 GGTGGTTCAACTAAGAGATGTGG 58.996 47.826 0.00 0.00 0.00 4.17
1301 1352 4.974645 TGGTGGTTCAACTAAGAGATGT 57.025 40.909 0.00 0.00 0.00 3.06
1302 1353 6.036083 CGTAATGGTGGTTCAACTAAGAGATG 59.964 42.308 0.00 0.00 0.00 2.90
1303 1354 6.106673 CGTAATGGTGGTTCAACTAAGAGAT 58.893 40.000 0.00 0.00 0.00 2.75
1321 1372 1.076533 ACGCTCAGTTCGCCGTAATG 61.077 55.000 0.00 0.00 31.43 1.90
1324 1375 1.005294 GAAACGCTCAGTTCGCCGTA 61.005 55.000 0.00 0.00 43.37 4.02
1325 1376 2.279918 AAACGCTCAGTTCGCCGT 60.280 55.556 0.00 0.00 43.37 5.68
1326 1377 1.626654 ATGAAACGCTCAGTTCGCCG 61.627 55.000 0.00 0.00 43.37 6.46
1349 1400 9.533253 AAAATTGTAGATGGTTCAAAACTTCAG 57.467 29.630 0.00 0.00 0.00 3.02
1383 1434 0.986992 GATTTGCGCACATGCTCAAC 59.013 50.000 14.86 0.00 44.22 3.18
1395 1446 5.156355 GGCATATATTCAGTTGGATTTGCG 58.844 41.667 0.00 0.00 0.00 4.85
1456 1507 4.400036 AACCGTAAGCGAATGAAACTTC 57.600 40.909 0.00 0.00 41.33 3.01
1482 1533 5.519927 GCAATACAAATACCAGGACAAATGC 59.480 40.000 0.00 0.00 0.00 3.56
1533 1584 5.519206 GGCAGTTGTAAAAGGTATCTACTCG 59.481 44.000 0.00 0.00 0.00 4.18
1543 1594 2.231235 GGGTGATGGCAGTTGTAAAAGG 59.769 50.000 0.00 0.00 0.00 3.11
1563 1614 4.880759 TCTGCAAACCAATAAACATGTGG 58.119 39.130 0.00 0.00 38.46 4.17
1586 1638 4.439837 GCAGCAGAAATGGAGAGGAAAATC 60.440 45.833 0.00 0.00 0.00 2.17
1595 1647 0.172803 GCCTTGCAGCAGAAATGGAG 59.827 55.000 0.00 0.00 0.00 3.86
1622 1674 5.015067 CATGAATGCAGTAAGCTACATCG 57.985 43.478 0.00 0.00 45.94 3.84
1664 1716 1.566018 CCGCCCAGTTTCGTGTCTTC 61.566 60.000 0.00 0.00 0.00 2.87
1707 1759 5.662456 CAATGGCATTGTATTTGACCATCA 58.338 37.500 27.93 0.00 36.91 3.07
1729 1781 9.868277 AACAACAATCATAAGAAAACAAAGACA 57.132 25.926 0.00 0.00 0.00 3.41
1751 1803 9.909644 GAGAACTAGTACATTCTAACAGAACAA 57.090 33.333 0.00 0.00 37.00 2.83
1801 1853 7.468141 AGATTGCACCGAGATAGAATATGTA 57.532 36.000 0.00 0.00 0.00 2.29
1809 1861 6.313905 AGTTTACAAAGATTGCACCGAGATAG 59.686 38.462 0.00 0.00 0.00 2.08
1928 1981 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
1929 1982 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
1930 1983 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
1931 1984 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
1932 1985 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
1933 1986 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
1956 2009 8.702438 GCGTTTTCAATACTAGTGTAGTGTAAA 58.298 33.333 5.39 0.00 43.00 2.01
1957 2010 8.084073 AGCGTTTTCAATACTAGTGTAGTGTAA 58.916 33.333 5.39 0.00 43.00 2.41
1958 2011 7.596494 AGCGTTTTCAATACTAGTGTAGTGTA 58.404 34.615 5.39 0.00 43.00 2.90
1959 2012 6.453092 AGCGTTTTCAATACTAGTGTAGTGT 58.547 36.000 5.39 0.00 43.00 3.55
1960 2013 6.807230 AGAGCGTTTTCAATACTAGTGTAGTG 59.193 38.462 5.39 0.00 43.60 2.74
1961 2014 6.921914 AGAGCGTTTTCAATACTAGTGTAGT 58.078 36.000 5.39 0.00 42.68 2.73
1962 2015 7.328737 ACAAGAGCGTTTTCAATACTAGTGTAG 59.671 37.037 5.39 0.00 31.51 2.74
1963 2016 7.149973 ACAAGAGCGTTTTCAATACTAGTGTA 58.850 34.615 5.39 0.00 0.00 2.90
1964 2017 5.989777 ACAAGAGCGTTTTCAATACTAGTGT 59.010 36.000 5.39 0.00 0.00 3.55
1965 2018 6.467723 ACAAGAGCGTTTTCAATACTAGTG 57.532 37.500 5.39 0.00 0.00 2.74
1966 2019 8.773404 AATACAAGAGCGTTTTCAATACTAGT 57.227 30.769 0.00 0.00 0.00 2.57
1969 2022 8.612619 CCATAATACAAGAGCGTTTTCAATACT 58.387 33.333 0.00 0.00 0.00 2.12
1970 2023 7.855904 CCCATAATACAAGAGCGTTTTCAATAC 59.144 37.037 0.00 0.00 0.00 1.89
1971 2024 7.771361 TCCCATAATACAAGAGCGTTTTCAATA 59.229 33.333 0.00 0.00 0.00 1.90
1972 2025 6.601613 TCCCATAATACAAGAGCGTTTTCAAT 59.398 34.615 0.00 0.00 0.00 2.57
1973 2026 5.941058 TCCCATAATACAAGAGCGTTTTCAA 59.059 36.000 0.00 0.00 0.00 2.69
1974 2027 5.353123 GTCCCATAATACAAGAGCGTTTTCA 59.647 40.000 0.00 0.00 0.00 2.69
1975 2028 5.501897 CGTCCCATAATACAAGAGCGTTTTC 60.502 44.000 0.00 0.00 0.00 2.29
1976 2029 4.331717 CGTCCCATAATACAAGAGCGTTTT 59.668 41.667 0.00 0.00 0.00 2.43
1977 2030 3.869246 CGTCCCATAATACAAGAGCGTTT 59.131 43.478 0.00 0.00 0.00 3.60
1978 2031 3.454375 CGTCCCATAATACAAGAGCGTT 58.546 45.455 0.00 0.00 0.00 4.84
1979 2032 2.223971 CCGTCCCATAATACAAGAGCGT 60.224 50.000 0.00 0.00 0.00 5.07
1980 2033 2.035449 TCCGTCCCATAATACAAGAGCG 59.965 50.000 0.00 0.00 0.00 5.03
1981 2034 3.555168 CCTCCGTCCCATAATACAAGAGC 60.555 52.174 0.00 0.00 0.00 4.09
1982 2035 3.006967 CCCTCCGTCCCATAATACAAGAG 59.993 52.174 0.00 0.00 0.00 2.85
1983 2036 2.969950 CCCTCCGTCCCATAATACAAGA 59.030 50.000 0.00 0.00 0.00 3.02
1984 2037 2.969950 TCCCTCCGTCCCATAATACAAG 59.030 50.000 0.00 0.00 0.00 3.16
1985 2038 2.969950 CTCCCTCCGTCCCATAATACAA 59.030 50.000 0.00 0.00 0.00 2.41
1986 2039 2.090943 ACTCCCTCCGTCCCATAATACA 60.091 50.000 0.00 0.00 0.00 2.29
1987 2040 2.606378 ACTCCCTCCGTCCCATAATAC 58.394 52.381 0.00 0.00 0.00 1.89
1988 2041 3.400322 AGTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
1989 2042 2.179424 AGTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
1990 2043 1.572415 AGTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
1991 2044 1.229131 AGTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
1992 2045 0.338814 AAGTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
1993 2046 0.613853 CAAGTACTCCCTCCGTCCCA 60.614 60.000 0.00 0.00 0.00 4.37
1994 2047 1.328430 CCAAGTACTCCCTCCGTCCC 61.328 65.000 0.00 0.00 0.00 4.46
1995 2048 1.328430 CCCAAGTACTCCCTCCGTCC 61.328 65.000 0.00 0.00 0.00 4.79
1996 2049 0.324091 TCCCAAGTACTCCCTCCGTC 60.324 60.000 0.00 0.00 0.00 4.79
1997 2050 0.338814 ATCCCAAGTACTCCCTCCGT 59.661 55.000 0.00 0.00 0.00 4.69
1998 2051 0.753262 CATCCCAAGTACTCCCTCCG 59.247 60.000 0.00 0.00 0.00 4.63
1999 2052 1.132500 CCATCCCAAGTACTCCCTCC 58.868 60.000 0.00 0.00 0.00 4.30
2000 2053 1.132500 CCCATCCCAAGTACTCCCTC 58.868 60.000 0.00 0.00 0.00 4.30
2001 2054 0.722676 TCCCATCCCAAGTACTCCCT 59.277 55.000 0.00 0.00 0.00 4.20
2002 2055 1.421646 CATCCCATCCCAAGTACTCCC 59.578 57.143 0.00 0.00 0.00 4.30
2003 2056 1.421646 CCATCCCATCCCAAGTACTCC 59.578 57.143 0.00 0.00 0.00 3.85
2004 2057 2.408565 TCCATCCCATCCCAAGTACTC 58.591 52.381 0.00 0.00 0.00 2.59
2005 2058 2.587060 TCCATCCCATCCCAAGTACT 57.413 50.000 0.00 0.00 0.00 2.73
2006 2059 2.224867 CCATCCATCCCATCCCAAGTAC 60.225 54.545 0.00 0.00 0.00 2.73
2007 2060 2.065007 CCATCCATCCCATCCCAAGTA 58.935 52.381 0.00 0.00 0.00 2.24
2008 2061 0.855598 CCATCCATCCCATCCCAAGT 59.144 55.000 0.00 0.00 0.00 3.16
2009 2062 0.855598 ACCATCCATCCCATCCCAAG 59.144 55.000 0.00 0.00 0.00 3.61
2010 2063 1.317922 AACCATCCATCCCATCCCAA 58.682 50.000 0.00 0.00 0.00 4.12
2147 2200 6.443206 CCATGAGGGAGGAGATATGATAGTTT 59.557 42.308 0.00 0.00 40.01 2.66
2153 2206 3.514539 CACCATGAGGGAGGAGATATGA 58.485 50.000 0.00 0.00 41.15 2.15
2323 2376 5.968254 TGCATCACACATGAAAAGCATTAT 58.032 33.333 0.00 0.00 38.69 1.28
2433 2488 1.126113 CGAAACGTGGGATCAACTTCG 59.874 52.381 0.00 0.00 0.00 3.79
2451 2506 6.989759 TGCCATAATTAATAAGCTCTTCACGA 59.010 34.615 0.00 0.00 0.00 4.35
2553 2608 0.671163 TTCGGCACCGGTGATAACAC 60.671 55.000 38.30 18.50 45.27 3.32
2560 2622 1.305219 ATGTCATTTCGGCACCGGTG 61.305 55.000 30.66 30.66 40.25 4.94
2561 2623 0.608035 AATGTCATTTCGGCACCGGT 60.608 50.000 0.00 0.00 40.25 5.28
2562 2624 0.098728 GAATGTCATTTCGGCACCGG 59.901 55.000 9.58 0.00 40.25 5.28
2563 2625 0.801872 TGAATGTCATTTCGGCACCG 59.198 50.000 1.73 1.73 41.35 4.94
2564 2626 3.627577 AGTATGAATGTCATTTCGGCACC 59.372 43.478 0.00 0.00 38.26 5.01
2565 2627 4.882671 AGTATGAATGTCATTTCGGCAC 57.117 40.909 0.00 0.00 38.26 5.01
2566 2628 5.670485 ACTAGTATGAATGTCATTTCGGCA 58.330 37.500 0.00 0.00 38.26 5.69
2770 2842 4.530553 TGCTGTTGAGGGAAACTAGTATGA 59.469 41.667 0.00 0.00 0.00 2.15
2773 2845 4.967084 TTGCTGTTGAGGGAAACTAGTA 57.033 40.909 0.00 0.00 0.00 1.82
2774 2846 3.857157 TTGCTGTTGAGGGAAACTAGT 57.143 42.857 0.00 0.00 0.00 2.57
2946 3019 7.725818 AACTAACTAGTGTAAGTTTGGCTTC 57.274 36.000 11.01 0.00 40.20 3.86
2947 3020 9.788889 ATAAACTAACTAGTGTAAGTTTGGCTT 57.211 29.630 26.22 12.85 41.11 4.35
3182 3257 6.421801 CACATGAAGAAAGGATTTGGTGAAAC 59.578 38.462 0.00 0.00 39.27 2.78
3307 3387 1.277557 AGAAACAGAGGAAGCGAGCAT 59.722 47.619 0.00 0.00 0.00 3.79
3308 3388 0.681733 AGAAACAGAGGAAGCGAGCA 59.318 50.000 0.00 0.00 0.00 4.26
3564 3644 4.517453 TGCAACAGGTAATGAGGTGTAAAC 59.483 41.667 0.00 0.00 0.00 2.01
3664 3744 3.895232 TGAGCAACAGAGAAGGGATAC 57.105 47.619 0.00 0.00 0.00 2.24
3683 3763 6.017192 TCCAATGAACAATGTAATAGCGGATG 60.017 38.462 0.00 0.00 0.00 3.51
3688 3768 8.416329 AGGAAATCCAATGAACAATGTAATAGC 58.584 33.333 1.67 0.00 38.89 2.97
3752 3832 7.336679 CCAAGGATGTTGAGTTATGTTCATACA 59.663 37.037 0.00 0.00 38.95 2.29
3754 3834 7.552687 GTCCAAGGATGTTGAGTTATGTTCATA 59.447 37.037 0.00 0.00 0.00 2.15
3770 3850 6.106673 AGTTCACTTTATACGTCCAAGGATG 58.893 40.000 6.77 6.77 37.19 3.51
3778 3858 8.592998 CAGATAACCAAGTTCACTTTATACGTC 58.407 37.037 0.00 0.00 33.11 4.34
3806 3886 5.127845 TCTTCCTATTGTCTCCTAAGTGCTG 59.872 44.000 0.00 0.00 0.00 4.41
3865 3945 4.168922 TCAATCAAGCACTGAAGCAATG 57.831 40.909 0.00 0.00 37.67 2.82
3926 4009 1.312815 GCAATAGCTCGAATGGGCTT 58.687 50.000 1.94 0.00 39.65 4.35
4090 4185 1.004044 AGCTGATGAGGTTGAAGGTGG 59.996 52.381 0.00 0.00 0.00 4.61
4092 4187 1.280421 GGAGCTGATGAGGTTGAAGGT 59.720 52.381 0.00 0.00 0.00 3.50
4132 4227 6.061441 TCAGTGGCTCAGAATTTCAGTTTTA 58.939 36.000 0.00 0.00 0.00 1.52
4149 4244 5.183904 AGTTCACAAGGATTAAATCAGTGGC 59.816 40.000 0.00 0.00 32.54 5.01
4207 4302 7.601705 AAAAGAGAGGATGAAAAATCCAACA 57.398 32.000 7.11 0.00 40.61 3.33
4245 4340 3.865011 TCTGACAATCTCTCAGACTGC 57.135 47.619 0.00 0.00 39.41 4.40
4400 4495 4.738740 CGGAGGCTGTAGAAGTTATAAACG 59.261 45.833 0.00 0.00 36.23 3.60
4526 4621 7.041721 TGATGTCTTACTTGATATCCACACAC 58.958 38.462 0.00 0.00 34.87 3.82
4663 4759 6.622549 ACTGAAACGAAGTATAGAGAACTGG 58.377 40.000 0.00 0.00 45.00 4.00
4772 4868 2.961522 TTTTGCTTAAGGCTCGTTCG 57.038 45.000 4.29 0.00 42.39 3.95
4849 4947 8.986477 AGAAGTTCCAAATTATGTGCAATTAC 57.014 30.769 0.00 0.00 0.00 1.89
4850 4948 8.801299 TGAGAAGTTCCAAATTATGTGCAATTA 58.199 29.630 0.00 0.00 0.00 1.40
4951 5051 5.235305 TCAGAGCAAACTCAACAAGAAAC 57.765 39.130 0.00 0.00 46.09 2.78
5069 5169 1.578206 GCTCTTGTTCCACTTCGGGC 61.578 60.000 0.00 0.00 34.36 6.13
5090 5190 0.689623 CTGGTTCTGGTTCAGGCTCT 59.310 55.000 0.00 0.00 31.51 4.09
5096 5196 0.397941 CTGGCTCTGGTTCTGGTTCA 59.602 55.000 0.00 0.00 0.00 3.18
5404 5509 4.456911 ACGTCATCTGCAGTGATCAAAAAT 59.543 37.500 14.67 0.00 0.00 1.82
5411 5516 0.742281 GGCACGTCATCTGCAGTGAT 60.742 55.000 14.67 0.00 36.27 3.06
5414 5519 2.046892 GGGCACGTCATCTGCAGT 60.047 61.111 14.67 0.00 36.27 4.40
5482 5587 0.546122 TTGAACTGGGTGCAGTGACT 59.454 50.000 0.00 0.00 35.30 3.41
5537 5642 8.310406 TGTTGCATCTATAGGAAAATGTATCG 57.690 34.615 0.00 0.00 0.00 2.92
5564 5867 4.944619 TGATCAGCAAGACAGGGTATAG 57.055 45.455 0.00 0.00 0.00 1.31
5692 6000 0.617820 TCTCCCAGGGGTTGTAGCTC 60.618 60.000 5.33 0.00 36.47 4.09
5956 6264 2.414785 GCCATAAGGGTGTTGGGCG 61.415 63.158 0.00 0.00 39.65 6.13
6007 6315 2.125310 TACGCATTGCCCTGGACG 60.125 61.111 2.41 0.00 0.00 4.79
6108 6416 2.168728 CCCTTCCTACCTGAGCTACAAC 59.831 54.545 0.00 0.00 0.00 3.32
6371 6680 1.600413 CGGAGCAACAAGAGGCAAAAC 60.600 52.381 0.00 0.00 0.00 2.43
6390 6699 2.468532 AAAGAAAACAGTGGTTCGCG 57.531 45.000 0.00 0.00 35.82 5.87
6461 6770 5.411669 ACGAATTGGAATCAACTAAGTGACC 59.588 40.000 0.00 0.00 35.48 4.02
6549 6858 1.029947 GGGGTACAAGTTGATGCCCG 61.030 60.000 10.54 0.00 37.04 6.13
6711 7033 8.651589 AGCATTGTAGTTAGCATAGGAGTATA 57.348 34.615 0.00 0.00 0.00 1.47
6712 7034 7.546250 AGCATTGTAGTTAGCATAGGAGTAT 57.454 36.000 0.00 0.00 0.00 2.12
6713 7035 6.978674 AGCATTGTAGTTAGCATAGGAGTA 57.021 37.500 0.00 0.00 0.00 2.59
6745 7083 9.512588 AGATGTATGAGTTTCAAAGACAGAAAT 57.487 29.630 0.00 0.00 37.33 2.17
6795 7140 6.038601 TCAATATAATGTACGCAACGGTTG 57.961 37.500 16.35 16.35 0.00 3.77
6871 7229 6.916909 TCTCTAGAGATGGGAGTCAATTAGT 58.083 40.000 18.76 0.00 31.41 2.24
6874 7232 4.588528 GCTCTCTAGAGATGGGAGTCAATT 59.411 45.833 22.59 0.00 44.74 2.32
6875 7233 4.151883 GCTCTCTAGAGATGGGAGTCAAT 58.848 47.826 22.59 0.00 44.74 2.57
6876 7234 3.053320 TGCTCTCTAGAGATGGGAGTCAA 60.053 47.826 22.59 0.00 44.74 3.18
6877 7235 2.511637 TGCTCTCTAGAGATGGGAGTCA 59.488 50.000 22.59 10.01 44.74 3.41
6878 7236 3.222173 TGCTCTCTAGAGATGGGAGTC 57.778 52.381 22.59 7.84 44.74 3.36
6879 7237 3.896888 CAATGCTCTCTAGAGATGGGAGT 59.103 47.826 22.59 9.99 44.74 3.85
6880 7238 3.258872 CCAATGCTCTCTAGAGATGGGAG 59.741 52.174 24.05 14.38 44.74 4.30
6881 7239 3.237746 CCAATGCTCTCTAGAGATGGGA 58.762 50.000 24.05 15.97 44.74 4.37
6882 7240 2.302445 CCCAATGCTCTCTAGAGATGGG 59.698 54.545 31.26 31.26 46.08 4.00
6883 7241 3.237746 TCCCAATGCTCTCTAGAGATGG 58.762 50.000 24.53 24.53 44.74 3.51
6884 7242 3.306225 GCTCCCAATGCTCTCTAGAGATG 60.306 52.174 22.59 16.84 44.74 2.90
6885 7243 2.899256 GCTCCCAATGCTCTCTAGAGAT 59.101 50.000 22.59 5.70 44.74 2.75
6886 7244 2.315176 GCTCCCAATGCTCTCTAGAGA 58.685 52.381 21.16 21.16 44.74 3.10
6887 7245 2.037901 TGCTCCCAATGCTCTCTAGAG 58.962 52.381 13.98 13.98 44.75 2.43
6888 7246 1.759445 GTGCTCCCAATGCTCTCTAGA 59.241 52.381 0.00 0.00 0.00 2.43
6889 7247 1.202627 GGTGCTCCCAATGCTCTCTAG 60.203 57.143 0.00 0.00 0.00 2.43
6890 7248 0.833287 GGTGCTCCCAATGCTCTCTA 59.167 55.000 0.00 0.00 0.00 2.43
6891 7249 1.606531 GGTGCTCCCAATGCTCTCT 59.393 57.895 0.00 0.00 0.00 3.10
6892 7250 4.232310 GGTGCTCCCAATGCTCTC 57.768 61.111 0.00 0.00 0.00 3.20
6909 7267 0.398664 CTGGTACTCCCACCCCTAGG 60.399 65.000 0.06 0.06 38.72 3.02
6910 7268 0.635009 TCTGGTACTCCCACCCCTAG 59.365 60.000 0.00 0.00 38.72 3.02
6911 7269 1.326055 ATCTGGTACTCCCACCCCTA 58.674 55.000 0.00 0.00 38.72 3.53
6912 7270 1.326055 TATCTGGTACTCCCACCCCT 58.674 55.000 0.00 0.00 38.72 4.79
6913 7271 2.417719 ATATCTGGTACTCCCACCCC 57.582 55.000 0.00 0.00 38.72 4.95
6914 7272 4.470304 GGATAATATCTGGTACTCCCACCC 59.530 50.000 0.00 0.00 38.72 4.61
6915 7273 4.470304 GGGATAATATCTGGTACTCCCACC 59.530 50.000 6.24 0.00 40.51 4.61
6916 7274 5.342866 AGGGATAATATCTGGTACTCCCAC 58.657 45.833 12.19 0.00 42.76 4.61
6917 7275 5.633473 AGGGATAATATCTGGTACTCCCA 57.367 43.478 12.19 0.00 42.76 4.37
6918 7276 5.189934 CCAAGGGATAATATCTGGTACTCCC 59.810 48.000 0.00 3.42 41.00 4.30
6919 7277 5.189934 CCCAAGGGATAATATCTGGTACTCC 59.810 48.000 0.00 0.00 37.50 3.85
6920 7278 5.785940 ACCCAAGGGATAATATCTGGTACTC 59.214 44.000 13.15 0.00 38.96 2.59
6921 7279 5.738401 ACCCAAGGGATAATATCTGGTACT 58.262 41.667 13.15 0.00 38.96 2.73
6922 7280 5.337330 CGACCCAAGGGATAATATCTGGTAC 60.337 48.000 13.15 0.00 38.96 3.34
6923 7281 4.775780 CGACCCAAGGGATAATATCTGGTA 59.224 45.833 13.15 0.00 38.96 3.25
6924 7282 3.583086 CGACCCAAGGGATAATATCTGGT 59.417 47.826 13.15 0.58 38.96 4.00
6925 7283 3.055094 CCGACCCAAGGGATAATATCTGG 60.055 52.174 13.15 0.66 38.96 3.86
6926 7284 4.207891 CCGACCCAAGGGATAATATCTG 57.792 50.000 13.15 0.00 38.96 2.90
6937 7295 2.282180 CACAACCCCGACCCAAGG 60.282 66.667 0.00 0.00 0.00 3.61
6938 7296 2.282180 CCACAACCCCGACCCAAG 60.282 66.667 0.00 0.00 0.00 3.61
6939 7297 3.892162 CCCACAACCCCGACCCAA 61.892 66.667 0.00 0.00 0.00 4.12
6941 7299 4.653888 CACCCACAACCCCGACCC 62.654 72.222 0.00 0.00 0.00 4.46
6942 7300 2.518709 TACACCCACAACCCCGACC 61.519 63.158 0.00 0.00 0.00 4.79
6943 7301 1.301953 GTACACCCACAACCCCGAC 60.302 63.158 0.00 0.00 0.00 4.79
6944 7302 2.870119 CGTACACCCACAACCCCGA 61.870 63.158 0.00 0.00 0.00 5.14
6945 7303 2.357760 CGTACACCCACAACCCCG 60.358 66.667 0.00 0.00 0.00 5.73
6946 7304 1.598685 CACGTACACCCACAACCCC 60.599 63.158 0.00 0.00 0.00 4.95
6947 7305 1.598685 CCACGTACACCCACAACCC 60.599 63.158 0.00 0.00 0.00 4.11
6948 7306 0.881600 GTCCACGTACACCCACAACC 60.882 60.000 0.00 0.00 0.00 3.77
6949 7307 0.881600 GGTCCACGTACACCCACAAC 60.882 60.000 4.05 0.00 0.00 3.32
6950 7308 1.335882 TGGTCCACGTACACCCACAA 61.336 55.000 11.61 0.00 0.00 3.33
6951 7309 1.750341 CTGGTCCACGTACACCCACA 61.750 60.000 11.61 0.00 0.00 4.17
6952 7310 1.005394 CTGGTCCACGTACACCCAC 60.005 63.158 11.61 0.00 0.00 4.61
6953 7311 1.152504 TCTGGTCCACGTACACCCA 60.153 57.895 11.61 4.36 0.00 4.51
6954 7312 1.291272 GTCTGGTCCACGTACACCC 59.709 63.158 11.61 0.01 0.00 4.61
6955 7313 1.080974 CGTCTGGTCCACGTACACC 60.081 63.158 7.95 7.95 32.41 4.16
6956 7314 1.731969 GCGTCTGGTCCACGTACAC 60.732 63.158 4.04 0.00 39.54 2.90
6957 7315 2.194889 TGCGTCTGGTCCACGTACA 61.195 57.895 4.04 0.00 39.54 2.90
6958 7316 1.731969 GTGCGTCTGGTCCACGTAC 60.732 63.158 7.23 7.23 43.86 3.67
6959 7317 2.646719 GTGCGTCTGGTCCACGTA 59.353 61.111 4.04 0.00 39.54 3.57
6960 7318 4.640855 CGTGCGTCTGGTCCACGT 62.641 66.667 4.04 0.00 45.08 4.49
6974 7332 4.147322 GTGGAATGGCGACGCGTG 62.147 66.667 20.70 10.73 0.00 5.34
6975 7333 3.876589 AAGTGGAATGGCGACGCGT 62.877 57.895 13.85 13.85 0.00 6.01
6976 7334 3.083600 GAAGTGGAATGGCGACGCG 62.084 63.158 14.61 3.53 0.00 6.01
6977 7335 1.970917 CTGAAGTGGAATGGCGACGC 61.971 60.000 12.43 12.43 0.00 5.19
6978 7336 1.970917 GCTGAAGTGGAATGGCGACG 61.971 60.000 0.00 0.00 0.00 5.12
6979 7337 0.955428 TGCTGAAGTGGAATGGCGAC 60.955 55.000 0.00 0.00 0.00 5.19
6980 7338 0.955428 GTGCTGAAGTGGAATGGCGA 60.955 55.000 0.00 0.00 0.00 5.54
6981 7339 1.503542 GTGCTGAAGTGGAATGGCG 59.496 57.895 0.00 0.00 0.00 5.69
6982 7340 1.503542 CGTGCTGAAGTGGAATGGC 59.496 57.895 0.00 0.00 0.00 4.40
6983 7341 1.503542 GCGTGCTGAAGTGGAATGG 59.496 57.895 0.00 0.00 0.00 3.16
6984 7342 1.133253 CGCGTGCTGAAGTGGAATG 59.867 57.895 0.00 0.00 0.00 2.67
6985 7343 2.034879 CCGCGTGCTGAAGTGGAAT 61.035 57.895 4.92 0.00 40.26 3.01
6986 7344 2.664851 CCGCGTGCTGAAGTGGAA 60.665 61.111 4.92 0.00 40.26 3.53
7008 7366 1.872234 CCGTACAGCATCGTGTCCG 60.872 63.158 0.00 0.00 30.20 4.79
7009 7367 1.518572 CCCGTACAGCATCGTGTCC 60.519 63.158 0.00 0.00 31.46 4.02
7010 7368 2.165301 GCCCGTACAGCATCGTGTC 61.165 63.158 0.13 0.00 31.46 3.67
7011 7369 2.125673 GCCCGTACAGCATCGTGT 60.126 61.111 0.13 0.00 34.21 4.49
7012 7370 2.890474 GGCCCGTACAGCATCGTG 60.890 66.667 7.15 0.00 0.00 4.35
7013 7371 4.508128 CGGCCCGTACAGCATCGT 62.508 66.667 0.00 0.00 0.00 3.73
7014 7372 4.508128 ACGGCCCGTACAGCATCG 62.508 66.667 7.20 4.97 38.73 3.84
7015 7373 2.890474 CACGGCCCGTACAGCATC 60.890 66.667 9.25 0.00 38.32 3.91
7016 7374 4.467084 CCACGGCCCGTACAGCAT 62.467 66.667 9.25 0.00 38.32 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.