Multiple sequence alignment - TraesCS7A01G136100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G136100 chr7A 100.000 2579 0 0 1 2579 88945036 88947614 0.000000e+00 4763
1 TraesCS7A01G136100 chr7A 96.774 372 11 1 1 371 50169537 50169166 1.010000e-173 619
2 TraesCS7A01G136100 chr7A 96.765 371 11 1 1 371 16705812 16705443 3.650000e-173 617
3 TraesCS7A01G136100 chr7A 94.565 92 5 0 396 487 682442455 682442546 2.680000e-30 143
4 TraesCS7A01G136100 chr7B 90.267 2137 139 30 491 2576 36386328 36388446 0.000000e+00 2730
5 TraesCS7A01G136100 chr7D 90.550 836 73 4 1505 2336 87424551 87425384 0.000000e+00 1101
6 TraesCS7A01G136100 chr7D 95.397 630 28 1 881 1509 87411837 87412466 0.000000e+00 1002
7 TraesCS7A01G136100 chr7D 92.573 377 26 2 491 865 87411146 87411522 8.120000e-150 540
8 TraesCS7A01G136100 chr7D 90.385 104 10 0 404 507 108173829 108173726 1.240000e-28 137
9 TraesCS7A01G136100 chr7D 93.478 92 6 0 397 488 632404687 632404596 1.240000e-28 137
10 TraesCS7A01G136100 chr4A 97.319 373 9 1 1 372 163932429 163932801 1.300000e-177 632
11 TraesCS7A01G136100 chr4A 97.051 373 11 0 1 373 714946242 714946614 1.680000e-176 628
12 TraesCS7A01G136100 chr5A 96.774 372 12 0 1 372 523586467 523586838 2.820000e-174 621
13 TraesCS7A01G136100 chr5A 96.765 371 12 0 1 371 76961391 76961021 1.010000e-173 619
14 TraesCS7A01G136100 chr5A 96.505 372 13 0 1 372 51948957 51949328 1.310000e-172 616
15 TraesCS7A01G136100 chr3A 96.765 371 12 0 1 371 461903647 461904017 1.010000e-173 619
16 TraesCS7A01G136100 chr3A 91.429 105 7 2 385 488 427762635 427762738 2.680000e-30 143
17 TraesCS7A01G136100 chr1B 96.296 378 13 1 1 378 582541547 582541923 1.010000e-173 619
18 TraesCS7A01G136100 chr5D 94.565 92 5 0 397 488 509426562 509426471 2.680000e-30 143
19 TraesCS7A01G136100 chr5D 92.784 97 7 0 396 492 452219489 452219393 9.620000e-30 141
20 TraesCS7A01G136100 chr6B 92.000 100 5 3 404 501 122970906 122970808 1.240000e-28 137
21 TraesCS7A01G136100 chr2A 92.632 95 6 1 399 493 572054211 572054304 4.480000e-28 135
22 TraesCS7A01G136100 chr1A 88.889 108 10 2 390 496 28616427 28616321 5.790000e-27 132
23 TraesCS7A01G136100 chr1D 75.100 249 47 8 2064 2310 364729726 364729961 4.540000e-18 102


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G136100 chr7A 88945036 88947614 2578 False 4763 4763 100.000 1 2579 1 chr7A.!!$F1 2578
1 TraesCS7A01G136100 chr7B 36386328 36388446 2118 False 2730 2730 90.267 491 2576 1 chr7B.!!$F1 2085
2 TraesCS7A01G136100 chr7D 87424551 87425384 833 False 1101 1101 90.550 1505 2336 1 chr7D.!!$F1 831
3 TraesCS7A01G136100 chr7D 87411146 87412466 1320 False 771 1002 93.985 491 1509 2 chr7D.!!$F2 1018

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
119 120 0.038892 GAGTGCGTCAGACCGGTTTA 60.039 55.0 9.42 0.0 0.00 2.01 F
214 215 0.042731 TGGTCTAGCTAGCACCCCTT 59.957 55.0 26.33 0.0 0.00 3.95 F
342 343 0.250381 CATCTCCCAGATGCAGAGGC 60.250 60.0 0.61 0.0 44.69 4.70 F
996 1304 0.318441 TGCACTCTAGCAAAGCTCGT 59.682 50.0 0.00 0.0 42.46 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1246 1554 1.133606 ACGTCCAGACCCACCATTTTT 60.134 47.619 0.00 0.0 0.00 1.94 R
1320 1628 2.952978 ACTAGCACTAGAAGATCCACCG 59.047 50.000 11.59 0.0 36.97 4.94 R
1428 1736 3.181445 ACCCATTGTTTGACTCACTAGCA 60.181 43.478 0.00 0.0 0.00 3.49 R
2374 2690 0.380378 CGGGCATCGGTTTATGGTTG 59.620 55.000 0.00 0.0 34.75 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.889227 CGTCATGGTGGCGTTGAT 58.111 55.556 0.00 0.00 41.12 2.57
22 23 1.425031 CGTCATGGTGGCGTTGATG 59.575 57.895 0.00 0.00 41.12 3.07
23 24 1.802636 GTCATGGTGGCGTTGATGG 59.197 57.895 0.00 0.00 0.00 3.51
24 25 2.045708 TCATGGTGGCGTTGATGGC 61.046 57.895 0.00 0.00 0.00 4.40
25 26 3.133464 ATGGTGGCGTTGATGGCG 61.133 61.111 0.00 0.00 37.19 5.69
28 29 3.499737 GTGGCGTTGATGGCGGAG 61.500 66.667 0.00 0.00 37.19 4.63
29 30 4.776322 TGGCGTTGATGGCGGAGG 62.776 66.667 0.00 0.00 37.19 4.30
30 31 4.467084 GGCGTTGATGGCGGAGGA 62.467 66.667 0.00 0.00 0.00 3.71
31 32 2.892425 GCGTTGATGGCGGAGGAG 60.892 66.667 0.00 0.00 0.00 3.69
32 33 2.892425 CGTTGATGGCGGAGGAGC 60.892 66.667 0.00 0.00 0.00 4.70
42 43 3.334054 GGAGGAGCCTGCCAAGGT 61.334 66.667 0.00 0.00 46.43 3.50
43 44 2.759795 GAGGAGCCTGCCAAGGTT 59.240 61.111 0.00 0.00 46.43 3.50
44 45 1.676967 GAGGAGCCTGCCAAGGTTG 60.677 63.158 0.00 0.00 46.43 3.77
58 59 1.885871 GGTTGGCACCTCAATCTGC 59.114 57.895 0.00 0.00 40.44 4.26
59 60 0.610232 GGTTGGCACCTCAATCTGCT 60.610 55.000 0.00 0.00 40.44 4.24
60 61 1.251251 GTTGGCACCTCAATCTGCTT 58.749 50.000 0.00 0.00 33.63 3.91
61 62 1.068055 GTTGGCACCTCAATCTGCTTG 60.068 52.381 0.00 0.00 36.09 4.01
62 63 0.609957 TGGCACCTCAATCTGCTTGG 60.610 55.000 0.00 0.00 35.43 3.61
63 64 0.322816 GGCACCTCAATCTGCTTGGA 60.323 55.000 0.00 0.00 35.43 3.53
64 65 1.093159 GCACCTCAATCTGCTTGGAG 58.907 55.000 0.00 0.00 35.43 3.86
65 66 1.339438 GCACCTCAATCTGCTTGGAGA 60.339 52.381 0.00 0.00 35.43 3.71
66 67 2.683152 GCACCTCAATCTGCTTGGAGAT 60.683 50.000 0.00 0.00 35.43 2.75
67 68 2.943690 CACCTCAATCTGCTTGGAGATG 59.056 50.000 5.44 1.51 35.43 2.90
68 69 2.092538 ACCTCAATCTGCTTGGAGATGG 60.093 50.000 5.44 3.01 35.43 3.51
69 70 2.172082 CCTCAATCTGCTTGGAGATGGA 59.828 50.000 8.56 8.56 35.43 3.41
70 71 3.204526 CTCAATCTGCTTGGAGATGGAC 58.795 50.000 5.44 0.00 35.43 4.02
71 72 2.092753 TCAATCTGCTTGGAGATGGACC 60.093 50.000 5.44 0.00 35.43 4.46
72 73 1.588239 ATCTGCTTGGAGATGGACCA 58.412 50.000 0.00 0.00 31.14 4.02
73 74 0.907486 TCTGCTTGGAGATGGACCAG 59.093 55.000 0.00 0.00 38.70 4.00
74 75 0.617413 CTGCTTGGAGATGGACCAGT 59.383 55.000 0.00 0.00 38.70 4.00
75 76 0.325933 TGCTTGGAGATGGACCAGTG 59.674 55.000 0.00 0.00 38.70 3.66
76 77 0.393537 GCTTGGAGATGGACCAGTGG 60.394 60.000 7.91 7.91 38.70 4.00
77 78 1.279496 CTTGGAGATGGACCAGTGGA 58.721 55.000 18.40 0.00 38.70 4.02
78 79 1.630369 CTTGGAGATGGACCAGTGGAA 59.370 52.381 18.40 0.74 38.70 3.53
79 80 1.279496 TGGAGATGGACCAGTGGAAG 58.721 55.000 18.40 0.00 33.22 3.46
80 81 1.203300 TGGAGATGGACCAGTGGAAGA 60.203 52.381 18.40 0.00 33.22 2.87
81 82 2.122768 GGAGATGGACCAGTGGAAGAT 58.877 52.381 18.40 3.59 0.00 2.40
82 83 2.158842 GGAGATGGACCAGTGGAAGATG 60.159 54.545 18.40 0.00 0.00 2.90
83 84 1.842562 AGATGGACCAGTGGAAGATGG 59.157 52.381 18.40 0.00 42.60 3.51
88 89 3.869623 CCAGTGGAAGATGGTGGAG 57.130 57.895 1.68 0.00 0.00 3.86
89 90 1.279496 CCAGTGGAAGATGGTGGAGA 58.721 55.000 1.68 0.00 0.00 3.71
90 91 1.065854 CCAGTGGAAGATGGTGGAGAC 60.066 57.143 1.68 0.00 0.00 3.36
91 92 0.898320 AGTGGAAGATGGTGGAGACG 59.102 55.000 0.00 0.00 0.00 4.18
92 93 0.895530 GTGGAAGATGGTGGAGACGA 59.104 55.000 0.00 0.00 0.00 4.20
93 94 0.895530 TGGAAGATGGTGGAGACGAC 59.104 55.000 0.00 0.00 0.00 4.34
94 95 0.895530 GGAAGATGGTGGAGACGACA 59.104 55.000 0.00 0.00 0.00 4.35
95 96 1.404315 GGAAGATGGTGGAGACGACAC 60.404 57.143 0.00 0.00 38.10 3.67
96 97 1.272490 GAAGATGGTGGAGACGACACA 59.728 52.381 0.00 0.00 40.54 3.72
97 98 1.561643 AGATGGTGGAGACGACACAT 58.438 50.000 0.00 0.00 40.54 3.21
98 99 1.902508 AGATGGTGGAGACGACACATT 59.097 47.619 0.00 0.00 40.54 2.71
99 100 2.303022 AGATGGTGGAGACGACACATTT 59.697 45.455 0.00 0.00 40.54 2.32
100 101 1.877637 TGGTGGAGACGACACATTTG 58.122 50.000 0.00 0.00 40.54 2.32
101 102 1.414550 TGGTGGAGACGACACATTTGA 59.585 47.619 0.00 0.00 40.54 2.69
102 103 2.069273 GGTGGAGACGACACATTTGAG 58.931 52.381 0.00 0.00 40.54 3.02
103 104 2.548067 GGTGGAGACGACACATTTGAGT 60.548 50.000 0.00 0.00 40.54 3.41
104 105 2.476619 GTGGAGACGACACATTTGAGTG 59.523 50.000 0.00 0.00 44.93 3.51
105 106 1.461127 GGAGACGACACATTTGAGTGC 59.539 52.381 0.00 0.00 43.23 4.40
106 107 1.125021 GAGACGACACATTTGAGTGCG 59.875 52.381 0.00 0.00 43.23 5.34
107 108 0.859232 GACGACACATTTGAGTGCGT 59.141 50.000 13.30 13.30 46.58 5.24
108 109 0.859232 ACGACACATTTGAGTGCGTC 59.141 50.000 9.50 0.00 43.39 5.19
109 110 0.858583 CGACACATTTGAGTGCGTCA 59.141 50.000 0.00 0.00 43.23 4.35
110 111 1.136529 CGACACATTTGAGTGCGTCAG 60.137 52.381 0.00 0.00 43.23 3.51
111 112 2.135139 GACACATTTGAGTGCGTCAGA 58.865 47.619 0.00 0.00 43.23 3.27
112 113 1.867233 ACACATTTGAGTGCGTCAGAC 59.133 47.619 0.00 0.00 43.23 3.51
113 114 1.195448 CACATTTGAGTGCGTCAGACC 59.805 52.381 0.00 0.00 36.21 3.85
114 115 0.439985 CATTTGAGTGCGTCAGACCG 59.560 55.000 0.00 0.00 36.21 4.79
115 116 0.670546 ATTTGAGTGCGTCAGACCGG 60.671 55.000 0.00 0.00 36.21 5.28
116 117 2.023414 TTTGAGTGCGTCAGACCGGT 62.023 55.000 6.92 6.92 36.21 5.28
117 118 2.023414 TTGAGTGCGTCAGACCGGTT 62.023 55.000 9.42 0.00 36.21 4.44
118 119 1.300697 GAGTGCGTCAGACCGGTTT 60.301 57.895 9.42 0.00 0.00 3.27
119 120 0.038892 GAGTGCGTCAGACCGGTTTA 60.039 55.000 9.42 0.00 0.00 2.01
120 121 0.606604 AGTGCGTCAGACCGGTTTAT 59.393 50.000 9.42 0.00 0.00 1.40
121 122 0.719465 GTGCGTCAGACCGGTTTATG 59.281 55.000 9.42 8.92 0.00 1.90
122 123 1.017177 TGCGTCAGACCGGTTTATGC 61.017 55.000 9.42 14.80 0.00 3.14
123 124 1.702491 GCGTCAGACCGGTTTATGCC 61.702 60.000 9.42 0.00 0.00 4.40
124 125 1.087771 CGTCAGACCGGTTTATGCCC 61.088 60.000 9.42 0.00 0.00 5.36
125 126 0.746923 GTCAGACCGGTTTATGCCCC 60.747 60.000 9.42 0.00 0.00 5.80
126 127 1.202099 TCAGACCGGTTTATGCCCCA 61.202 55.000 9.42 0.00 0.00 4.96
127 128 0.748005 CAGACCGGTTTATGCCCCAG 60.748 60.000 9.42 0.00 0.00 4.45
128 129 0.912487 AGACCGGTTTATGCCCCAGA 60.912 55.000 9.42 0.00 0.00 3.86
129 130 0.746923 GACCGGTTTATGCCCCAGAC 60.747 60.000 9.42 0.00 0.00 3.51
130 131 1.453197 CCGGTTTATGCCCCAGACC 60.453 63.158 0.00 0.00 0.00 3.85
131 132 1.453197 CGGTTTATGCCCCAGACCC 60.453 63.158 0.00 0.00 0.00 4.46
132 133 1.453197 GGTTTATGCCCCAGACCCG 60.453 63.158 0.00 0.00 0.00 5.28
133 134 1.453197 GTTTATGCCCCAGACCCGG 60.453 63.158 0.00 0.00 0.00 5.73
134 135 1.926489 TTTATGCCCCAGACCCGGT 60.926 57.895 0.00 0.00 0.00 5.28
135 136 0.620990 TTTATGCCCCAGACCCGGTA 60.621 55.000 0.00 0.00 0.00 4.02
136 137 0.400815 TTATGCCCCAGACCCGGTAT 60.401 55.000 0.00 0.00 0.00 2.73
137 138 1.125093 TATGCCCCAGACCCGGTATG 61.125 60.000 5.11 5.11 0.00 2.39
138 139 3.087906 GCCCCAGACCCGGTATGT 61.088 66.667 11.23 0.00 0.00 2.29
139 140 2.908015 CCCCAGACCCGGTATGTG 59.092 66.667 11.23 0.00 0.00 3.21
140 141 2.742116 CCCCAGACCCGGTATGTGG 61.742 68.421 11.23 11.22 0.00 4.17
141 142 2.189521 CCAGACCCGGTATGTGGC 59.810 66.667 11.23 0.00 0.00 5.01
142 143 2.367202 CCAGACCCGGTATGTGGCT 61.367 63.158 11.23 0.00 0.00 4.75
143 144 1.046472 CCAGACCCGGTATGTGGCTA 61.046 60.000 11.23 0.00 0.00 3.93
144 145 0.389391 CAGACCCGGTATGTGGCTAG 59.611 60.000 3.86 0.00 0.00 3.42
145 146 0.759436 AGACCCGGTATGTGGCTAGG 60.759 60.000 0.00 0.00 0.00 3.02
146 147 2.379030 GACCCGGTATGTGGCTAGGC 62.379 65.000 9.85 9.85 0.00 3.93
147 148 2.140792 CCCGGTATGTGGCTAGGCT 61.141 63.158 18.18 0.00 0.00 4.58
148 149 1.069765 CCGGTATGTGGCTAGGCTG 59.930 63.158 18.18 0.00 0.00 4.85
149 150 1.069765 CGGTATGTGGCTAGGCTGG 59.930 63.158 18.18 0.00 0.00 4.85
150 151 1.451936 GGTATGTGGCTAGGCTGGG 59.548 63.158 18.18 0.00 0.00 4.45
151 152 1.451936 GTATGTGGCTAGGCTGGGG 59.548 63.158 18.18 0.00 0.00 4.96
152 153 1.054406 GTATGTGGCTAGGCTGGGGA 61.054 60.000 18.18 0.00 0.00 4.81
153 154 0.104462 TATGTGGCTAGGCTGGGGAT 60.104 55.000 18.18 4.86 0.00 3.85
154 155 0.995675 ATGTGGCTAGGCTGGGGATT 60.996 55.000 18.18 0.00 0.00 3.01
155 156 1.149401 GTGGCTAGGCTGGGGATTC 59.851 63.158 18.18 0.00 0.00 2.52
156 157 2.078665 TGGCTAGGCTGGGGATTCC 61.079 63.158 18.18 0.00 0.00 3.01
157 158 2.427753 GCTAGGCTGGGGATTCCG 59.572 66.667 0.00 0.00 38.76 4.30
158 159 3.151906 CTAGGCTGGGGATTCCGG 58.848 66.667 0.00 0.00 44.90 5.14
163 164 4.764143 CTGGGGATTCCGGCTTTT 57.236 55.556 0.00 0.00 38.76 2.27
164 165 2.192605 CTGGGGATTCCGGCTTTTG 58.807 57.895 0.00 0.00 38.76 2.44
165 166 0.323360 CTGGGGATTCCGGCTTTTGA 60.323 55.000 0.00 0.00 38.76 2.69
166 167 0.334676 TGGGGATTCCGGCTTTTGAT 59.665 50.000 0.00 0.00 38.76 2.57
167 168 0.746659 GGGGATTCCGGCTTTTGATG 59.253 55.000 0.00 0.00 0.00 3.07
168 169 1.474330 GGGATTCCGGCTTTTGATGT 58.526 50.000 0.00 0.00 0.00 3.06
169 170 1.824852 GGGATTCCGGCTTTTGATGTT 59.175 47.619 0.00 0.00 0.00 2.71
170 171 3.020984 GGGATTCCGGCTTTTGATGTTA 58.979 45.455 0.00 0.00 0.00 2.41
171 172 3.066760 GGGATTCCGGCTTTTGATGTTAG 59.933 47.826 0.00 0.00 0.00 2.34
172 173 3.066760 GGATTCCGGCTTTTGATGTTAGG 59.933 47.826 0.00 0.00 0.00 2.69
173 174 3.426787 TTCCGGCTTTTGATGTTAGGA 57.573 42.857 0.00 0.00 0.00 2.94
174 175 3.644966 TCCGGCTTTTGATGTTAGGAT 57.355 42.857 0.00 0.00 0.00 3.24
175 176 3.963129 TCCGGCTTTTGATGTTAGGATT 58.037 40.909 0.00 0.00 0.00 3.01
176 177 5.105567 TCCGGCTTTTGATGTTAGGATTA 57.894 39.130 0.00 0.00 0.00 1.75
177 178 5.123227 TCCGGCTTTTGATGTTAGGATTAG 58.877 41.667 0.00 0.00 0.00 1.73
178 179 4.275936 CCGGCTTTTGATGTTAGGATTAGG 59.724 45.833 0.00 0.00 0.00 2.69
179 180 4.881850 CGGCTTTTGATGTTAGGATTAGGT 59.118 41.667 0.00 0.00 0.00 3.08
180 181 5.220854 CGGCTTTTGATGTTAGGATTAGGTG 60.221 44.000 0.00 0.00 0.00 4.00
181 182 5.885912 GGCTTTTGATGTTAGGATTAGGTGA 59.114 40.000 0.00 0.00 0.00 4.02
182 183 6.038714 GGCTTTTGATGTTAGGATTAGGTGAG 59.961 42.308 0.00 0.00 0.00 3.51
183 184 6.599638 GCTTTTGATGTTAGGATTAGGTGAGT 59.400 38.462 0.00 0.00 0.00 3.41
184 185 7.414540 GCTTTTGATGTTAGGATTAGGTGAGTG 60.415 40.741 0.00 0.00 0.00 3.51
185 186 5.614324 TGATGTTAGGATTAGGTGAGTGG 57.386 43.478 0.00 0.00 0.00 4.00
186 187 5.030147 TGATGTTAGGATTAGGTGAGTGGT 58.970 41.667 0.00 0.00 0.00 4.16
187 188 5.128827 TGATGTTAGGATTAGGTGAGTGGTC 59.871 44.000 0.00 0.00 0.00 4.02
188 189 4.684724 TGTTAGGATTAGGTGAGTGGTCT 58.315 43.478 0.00 0.00 0.00 3.85
189 190 4.466370 TGTTAGGATTAGGTGAGTGGTCTG 59.534 45.833 0.00 0.00 0.00 3.51
190 191 2.472029 AGGATTAGGTGAGTGGTCTGG 58.528 52.381 0.00 0.00 0.00 3.86
191 192 1.486726 GGATTAGGTGAGTGGTCTGGG 59.513 57.143 0.00 0.00 0.00 4.45
192 193 2.188817 GATTAGGTGAGTGGTCTGGGT 58.811 52.381 0.00 0.00 0.00 4.51
193 194 3.371965 GATTAGGTGAGTGGTCTGGGTA 58.628 50.000 0.00 0.00 0.00 3.69
194 195 2.526888 TAGGTGAGTGGTCTGGGTAG 57.473 55.000 0.00 0.00 0.00 3.18
195 196 0.487772 AGGTGAGTGGTCTGGGTAGT 59.512 55.000 0.00 0.00 0.00 2.73
196 197 0.608640 GGTGAGTGGTCTGGGTAGTG 59.391 60.000 0.00 0.00 0.00 2.74
197 198 0.608640 GTGAGTGGTCTGGGTAGTGG 59.391 60.000 0.00 0.00 0.00 4.00
198 199 0.190069 TGAGTGGTCTGGGTAGTGGT 59.810 55.000 0.00 0.00 0.00 4.16
199 200 0.896226 GAGTGGTCTGGGTAGTGGTC 59.104 60.000 0.00 0.00 0.00 4.02
200 201 0.487772 AGTGGTCTGGGTAGTGGTCT 59.512 55.000 0.00 0.00 0.00 3.85
201 202 1.714787 AGTGGTCTGGGTAGTGGTCTA 59.285 52.381 0.00 0.00 0.00 2.59
202 203 2.100989 GTGGTCTGGGTAGTGGTCTAG 58.899 57.143 0.00 0.00 0.00 2.43
203 204 1.112950 GGTCTGGGTAGTGGTCTAGC 58.887 60.000 0.00 0.00 42.05 3.42
204 205 1.342175 GGTCTGGGTAGTGGTCTAGCT 60.342 57.143 0.00 0.00 42.31 3.32
205 206 2.091994 GGTCTGGGTAGTGGTCTAGCTA 60.092 54.545 0.00 0.00 42.31 3.32
206 207 3.215975 GTCTGGGTAGTGGTCTAGCTAG 58.784 54.545 15.01 15.01 46.92 3.42
207 208 1.957877 CTGGGTAGTGGTCTAGCTAGC 59.042 57.143 16.35 6.62 42.78 3.42
208 209 1.286849 TGGGTAGTGGTCTAGCTAGCA 59.713 52.381 18.83 6.43 42.31 3.49
209 210 1.682323 GGGTAGTGGTCTAGCTAGCAC 59.318 57.143 18.83 17.69 45.91 4.40
210 211 1.682323 GGTAGTGGTCTAGCTAGCACC 59.318 57.143 24.33 24.33 46.56 5.01
211 212 1.682323 GTAGTGGTCTAGCTAGCACCC 59.318 57.143 26.33 20.62 46.56 4.61
212 213 0.688087 AGTGGTCTAGCTAGCACCCC 60.688 60.000 26.33 20.13 46.56 4.95
213 214 0.688087 GTGGTCTAGCTAGCACCCCT 60.688 60.000 26.33 0.00 41.03 4.79
214 215 0.042731 TGGTCTAGCTAGCACCCCTT 59.957 55.000 26.33 0.00 0.00 3.95
215 216 0.753867 GGTCTAGCTAGCACCCCTTC 59.246 60.000 18.83 0.37 0.00 3.46
216 217 1.486211 GTCTAGCTAGCACCCCTTCA 58.514 55.000 18.83 0.00 0.00 3.02
217 218 2.043227 GTCTAGCTAGCACCCCTTCAT 58.957 52.381 18.83 0.00 0.00 2.57
218 219 2.036604 GTCTAGCTAGCACCCCTTCATC 59.963 54.545 18.83 0.00 0.00 2.92
219 220 2.042464 CTAGCTAGCACCCCTTCATCA 58.958 52.381 18.83 0.00 0.00 3.07
220 221 1.516110 AGCTAGCACCCCTTCATCAT 58.484 50.000 18.83 0.00 0.00 2.45
221 222 2.694397 AGCTAGCACCCCTTCATCATA 58.306 47.619 18.83 0.00 0.00 2.15
222 223 3.254960 AGCTAGCACCCCTTCATCATAT 58.745 45.455 18.83 0.00 0.00 1.78
223 224 3.008813 AGCTAGCACCCCTTCATCATATG 59.991 47.826 18.83 0.00 0.00 1.78
224 225 2.965671 AGCACCCCTTCATCATATGG 57.034 50.000 2.13 0.00 0.00 2.74
225 226 2.421725 AGCACCCCTTCATCATATGGA 58.578 47.619 2.13 0.00 0.00 3.41
226 227 2.991713 AGCACCCCTTCATCATATGGAT 59.008 45.455 2.13 0.00 36.39 3.41
227 228 4.178339 AGCACCCCTTCATCATATGGATA 58.822 43.478 2.13 0.00 33.95 2.59
228 229 4.226846 AGCACCCCTTCATCATATGGATAG 59.773 45.833 2.13 0.00 33.95 2.08
229 230 4.627255 GCACCCCTTCATCATATGGATAGG 60.627 50.000 2.13 5.20 33.95 2.57
230 231 4.784838 CACCCCTTCATCATATGGATAGGA 59.215 45.833 2.13 0.00 33.95 2.94
231 232 5.035556 ACCCCTTCATCATATGGATAGGAG 58.964 45.833 2.13 0.00 33.95 3.69
232 233 5.035556 CCCCTTCATCATATGGATAGGAGT 58.964 45.833 2.13 0.00 33.95 3.85
233 234 6.205298 CCCCTTCATCATATGGATAGGAGTA 58.795 44.000 2.13 0.00 33.95 2.59
234 235 6.326064 CCCCTTCATCATATGGATAGGAGTAG 59.674 46.154 2.13 0.00 33.95 2.57
235 236 6.183360 CCCTTCATCATATGGATAGGAGTAGC 60.183 46.154 2.13 0.00 33.95 3.58
236 237 6.456795 TTCATCATATGGATAGGAGTAGCG 57.543 41.667 2.13 0.00 33.95 4.26
237 238 5.755849 TCATCATATGGATAGGAGTAGCGA 58.244 41.667 2.13 0.00 33.95 4.93
238 239 5.590663 TCATCATATGGATAGGAGTAGCGAC 59.409 44.000 2.13 0.00 33.95 5.19
239 240 4.918588 TCATATGGATAGGAGTAGCGACA 58.081 43.478 2.13 0.00 0.00 4.35
240 241 5.510430 TCATATGGATAGGAGTAGCGACAT 58.490 41.667 2.13 0.00 0.00 3.06
241 242 6.659824 TCATATGGATAGGAGTAGCGACATA 58.340 40.000 2.13 0.00 0.00 2.29
242 243 7.290813 TCATATGGATAGGAGTAGCGACATAT 58.709 38.462 2.13 0.00 32.30 1.78
243 244 5.843673 ATGGATAGGAGTAGCGACATATG 57.156 43.478 0.00 0.00 0.00 1.78
244 245 4.663334 TGGATAGGAGTAGCGACATATGT 58.337 43.478 8.43 8.43 0.00 2.29
245 246 5.077564 TGGATAGGAGTAGCGACATATGTT 58.922 41.667 10.30 0.00 0.00 2.71
246 247 5.048013 TGGATAGGAGTAGCGACATATGTTG 60.048 44.000 17.52 17.52 0.00 3.33
256 257 3.995199 CGACATATGTTGCCTAGATGGT 58.005 45.455 10.30 0.00 38.35 3.55
257 258 3.742882 CGACATATGTTGCCTAGATGGTG 59.257 47.826 10.30 0.00 38.35 4.17
258 259 4.067896 GACATATGTTGCCTAGATGGTGG 58.932 47.826 10.30 0.00 38.35 4.61
259 260 3.716353 ACATATGTTGCCTAGATGGTGGA 59.284 43.478 1.41 0.00 38.35 4.02
260 261 4.352001 ACATATGTTGCCTAGATGGTGGAT 59.648 41.667 1.41 0.00 38.35 3.41
261 262 3.959495 ATGTTGCCTAGATGGTGGATT 57.041 42.857 0.00 0.00 38.35 3.01
262 263 3.281727 TGTTGCCTAGATGGTGGATTC 57.718 47.619 0.00 0.00 38.35 2.52
263 264 2.575735 TGTTGCCTAGATGGTGGATTCA 59.424 45.455 0.00 0.00 38.35 2.57
264 265 3.209410 GTTGCCTAGATGGTGGATTCAG 58.791 50.000 0.00 0.00 38.35 3.02
265 266 1.770658 TGCCTAGATGGTGGATTCAGG 59.229 52.381 0.00 0.00 38.35 3.86
266 267 1.544314 GCCTAGATGGTGGATTCAGGC 60.544 57.143 0.00 0.00 40.22 4.85
267 268 2.053244 CCTAGATGGTGGATTCAGGCT 58.947 52.381 0.00 0.00 0.00 4.58
268 269 2.441001 CCTAGATGGTGGATTCAGGCTT 59.559 50.000 0.00 0.00 0.00 4.35
269 270 3.648067 CCTAGATGGTGGATTCAGGCTTA 59.352 47.826 0.00 0.00 0.00 3.09
270 271 4.288105 CCTAGATGGTGGATTCAGGCTTAT 59.712 45.833 0.00 0.00 0.00 1.73
271 272 4.803329 AGATGGTGGATTCAGGCTTATT 57.197 40.909 0.00 0.00 0.00 1.40
272 273 4.467769 AGATGGTGGATTCAGGCTTATTG 58.532 43.478 0.00 0.00 0.00 1.90
273 274 3.737559 TGGTGGATTCAGGCTTATTGT 57.262 42.857 0.00 0.00 0.00 2.71
274 275 4.046286 TGGTGGATTCAGGCTTATTGTT 57.954 40.909 0.00 0.00 0.00 2.83
275 276 3.763360 TGGTGGATTCAGGCTTATTGTTG 59.237 43.478 0.00 0.00 0.00 3.33
276 277 3.763897 GGTGGATTCAGGCTTATTGTTGT 59.236 43.478 0.00 0.00 0.00 3.32
277 278 4.947388 GGTGGATTCAGGCTTATTGTTGTA 59.053 41.667 0.00 0.00 0.00 2.41
278 279 5.417580 GGTGGATTCAGGCTTATTGTTGTAA 59.582 40.000 0.00 0.00 0.00 2.41
279 280 6.322491 GTGGATTCAGGCTTATTGTTGTAAC 58.678 40.000 0.00 0.00 0.00 2.50
280 281 6.007076 TGGATTCAGGCTTATTGTTGTAACA 58.993 36.000 0.00 0.00 37.08 2.41
281 282 6.072175 TGGATTCAGGCTTATTGTTGTAACAC 60.072 38.462 0.00 0.00 38.92 3.32
282 283 6.151144 GGATTCAGGCTTATTGTTGTAACACT 59.849 38.462 0.00 0.00 38.92 3.55
283 284 6.952773 TTCAGGCTTATTGTTGTAACACTT 57.047 33.333 0.00 0.00 38.92 3.16
284 285 6.952773 TCAGGCTTATTGTTGTAACACTTT 57.047 33.333 0.00 0.00 38.92 2.66
285 286 6.734137 TCAGGCTTATTGTTGTAACACTTTG 58.266 36.000 0.00 0.00 38.92 2.77
286 287 6.320164 TCAGGCTTATTGTTGTAACACTTTGT 59.680 34.615 0.00 0.00 38.92 2.83
287 288 7.499563 TCAGGCTTATTGTTGTAACACTTTGTA 59.500 33.333 0.00 0.00 38.92 2.41
288 289 8.132362 CAGGCTTATTGTTGTAACACTTTGTAA 58.868 33.333 0.00 0.00 38.92 2.41
289 290 8.349983 AGGCTTATTGTTGTAACACTTTGTAAG 58.650 33.333 0.00 3.80 38.92 2.34
290 291 7.593644 GGCTTATTGTTGTAACACTTTGTAAGG 59.406 37.037 0.00 0.00 38.92 2.69
291 292 8.132995 GCTTATTGTTGTAACACTTTGTAAGGT 58.867 33.333 0.00 0.00 38.92 3.50
294 295 7.690952 TTGTTGTAACACTTTGTAAGGTTCT 57.309 32.000 0.00 0.00 38.92 3.01
295 296 7.311364 TGTTGTAACACTTTGTAAGGTTCTC 57.689 36.000 0.00 0.00 33.17 2.87
296 297 6.036300 TGTTGTAACACTTTGTAAGGTTCTCG 59.964 38.462 0.00 0.00 33.17 4.04
297 298 5.904941 TGTAACACTTTGTAAGGTTCTCGA 58.095 37.500 0.00 0.00 0.00 4.04
298 299 5.981315 TGTAACACTTTGTAAGGTTCTCGAG 59.019 40.000 5.93 5.93 0.00 4.04
299 300 4.931661 ACACTTTGTAAGGTTCTCGAGA 57.068 40.909 12.08 12.08 0.00 4.04
300 301 5.272283 ACACTTTGTAAGGTTCTCGAGAA 57.728 39.130 23.74 23.74 0.00 2.87
301 302 5.855045 ACACTTTGTAAGGTTCTCGAGAAT 58.145 37.500 29.29 16.91 36.33 2.40
302 303 6.989659 ACACTTTGTAAGGTTCTCGAGAATA 58.010 36.000 29.29 15.88 36.33 1.75
303 304 7.439381 ACACTTTGTAAGGTTCTCGAGAATAA 58.561 34.615 29.29 14.92 36.33 1.40
304 305 8.095169 ACACTTTGTAAGGTTCTCGAGAATAAT 58.905 33.333 29.29 19.57 36.33 1.28
305 306 8.596380 CACTTTGTAAGGTTCTCGAGAATAATC 58.404 37.037 29.29 16.70 36.33 1.75
306 307 8.311836 ACTTTGTAAGGTTCTCGAGAATAATCA 58.688 33.333 29.29 20.32 36.33 2.57
307 308 9.151471 CTTTGTAAGGTTCTCGAGAATAATCAA 57.849 33.333 29.29 23.82 36.33 2.57
308 309 9.667107 TTTGTAAGGTTCTCGAGAATAATCAAT 57.333 29.630 29.29 14.28 36.33 2.57
313 314 9.892130 AAGGTTCTCGAGAATAATCAATAAAGT 57.108 29.630 29.29 0.56 36.33 2.66
314 315 9.319143 AGGTTCTCGAGAATAATCAATAAAGTG 57.681 33.333 29.29 0.00 36.33 3.16
315 316 9.314321 GGTTCTCGAGAATAATCAATAAAGTGA 57.686 33.333 29.29 0.00 36.33 3.41
317 318 8.873215 TCTCGAGAATAATCAATAAAGTGACC 57.127 34.615 14.01 0.00 0.00 4.02
318 319 7.648112 TCTCGAGAATAATCAATAAAGTGACCG 59.352 37.037 14.01 0.00 0.00 4.79
319 320 7.262772 TCGAGAATAATCAATAAAGTGACCGT 58.737 34.615 0.00 0.00 0.00 4.83
320 321 8.407832 TCGAGAATAATCAATAAAGTGACCGTA 58.592 33.333 0.00 0.00 0.00 4.02
321 322 9.193133 CGAGAATAATCAATAAAGTGACCGTAT 57.807 33.333 0.00 0.00 0.00 3.06
323 324 8.774586 AGAATAATCAATAAAGTGACCGTATGC 58.225 33.333 0.00 0.00 0.00 3.14
324 325 8.445275 AATAATCAATAAAGTGACCGTATGCA 57.555 30.769 0.00 0.00 0.00 3.96
325 326 6.942532 AATCAATAAAGTGACCGTATGCAT 57.057 33.333 3.79 3.79 0.00 3.96
326 327 5.984233 TCAATAAAGTGACCGTATGCATC 57.016 39.130 0.19 0.00 0.00 3.91
327 328 5.670485 TCAATAAAGTGACCGTATGCATCT 58.330 37.500 0.19 0.00 0.00 2.90
328 329 5.753438 TCAATAAAGTGACCGTATGCATCTC 59.247 40.000 0.19 0.00 0.00 2.75
329 330 2.604046 AAGTGACCGTATGCATCTCC 57.396 50.000 0.19 0.00 0.00 3.71
330 331 0.753262 AGTGACCGTATGCATCTCCC 59.247 55.000 0.19 0.00 0.00 4.30
331 332 0.464036 GTGACCGTATGCATCTCCCA 59.536 55.000 0.19 0.00 0.00 4.37
332 333 0.752658 TGACCGTATGCATCTCCCAG 59.247 55.000 0.19 0.00 0.00 4.45
333 334 1.040646 GACCGTATGCATCTCCCAGA 58.959 55.000 0.19 0.00 0.00 3.86
334 335 1.620819 GACCGTATGCATCTCCCAGAT 59.379 52.381 0.19 0.00 34.74 2.90
342 343 0.250381 CATCTCCCAGATGCAGAGGC 60.250 60.000 0.61 0.00 44.69 4.70
343 344 1.417288 ATCTCCCAGATGCAGAGGCC 61.417 60.000 0.00 0.00 40.13 5.19
344 345 3.457625 CTCCCAGATGCAGAGGCCG 62.458 68.421 0.00 0.00 40.13 6.13
345 346 4.559063 CCCAGATGCAGAGGCCGG 62.559 72.222 0.00 0.00 40.13 6.13
346 347 4.559063 CCAGATGCAGAGGCCGGG 62.559 72.222 2.18 0.00 40.13 5.73
347 348 4.559063 CAGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
353 354 3.866582 CAGAGGCCGGGGGTCATC 61.867 72.222 2.18 0.00 0.00 2.92
366 367 4.586306 GGGGTCATCCTCCTTTTCTAAA 57.414 45.455 0.00 0.00 35.33 1.85
367 368 4.930696 GGGGTCATCCTCCTTTTCTAAAA 58.069 43.478 0.00 0.00 35.33 1.52
368 369 5.330233 GGGGTCATCCTCCTTTTCTAAAAA 58.670 41.667 0.00 0.00 35.33 1.94
413 414 8.953313 AGTTTATTTTATTTGTTACTCCCTCCG 58.047 33.333 0.00 0.00 0.00 4.63
414 415 8.733458 GTTTATTTTATTTGTTACTCCCTCCGT 58.267 33.333 0.00 0.00 0.00 4.69
415 416 9.956640 TTTATTTTATTTGTTACTCCCTCCGTA 57.043 29.630 0.00 0.00 0.00 4.02
416 417 9.956640 TTATTTTATTTGTTACTCCCTCCGTAA 57.043 29.630 0.00 0.00 0.00 3.18
417 418 8.866970 ATTTTATTTGTTACTCCCTCCGTAAA 57.133 30.769 0.00 0.00 0.00 2.01
418 419 7.910441 TTTATTTGTTACTCCCTCCGTAAAG 57.090 36.000 0.00 0.00 0.00 1.85
419 420 5.750352 ATTTGTTACTCCCTCCGTAAAGA 57.250 39.130 0.00 0.00 0.00 2.52
420 421 5.549742 TTTGTTACTCCCTCCGTAAAGAA 57.450 39.130 0.00 0.00 0.00 2.52
421 422 5.549742 TTGTTACTCCCTCCGTAAAGAAA 57.450 39.130 0.00 0.00 0.00 2.52
422 423 5.750352 TGTTACTCCCTCCGTAAAGAAAT 57.250 39.130 0.00 0.00 0.00 2.17
423 424 6.855763 TGTTACTCCCTCCGTAAAGAAATA 57.144 37.500 0.00 0.00 0.00 1.40
424 425 7.427989 TGTTACTCCCTCCGTAAAGAAATAT 57.572 36.000 0.00 0.00 0.00 1.28
425 426 8.537728 TGTTACTCCCTCCGTAAAGAAATATA 57.462 34.615 0.00 0.00 0.00 0.86
426 427 8.980596 TGTTACTCCCTCCGTAAAGAAATATAA 58.019 33.333 0.00 0.00 0.00 0.98
427 428 9.473640 GTTACTCCCTCCGTAAAGAAATATAAG 57.526 37.037 0.00 0.00 0.00 1.73
428 429 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
429 430 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
430 431 6.756221 TCCCTCCGTAAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
431 432 6.325545 TCCCTCCGTAAAGAAATATAAGAGCA 59.674 38.462 0.00 0.00 0.00 4.26
432 433 7.016268 TCCCTCCGTAAAGAAATATAAGAGCAT 59.984 37.037 0.00 0.00 0.00 3.79
433 434 7.661847 CCCTCCGTAAAGAAATATAAGAGCATT 59.338 37.037 0.00 0.00 0.00 3.56
434 435 8.713271 CCTCCGTAAAGAAATATAAGAGCATTC 58.287 37.037 0.00 0.00 0.00 2.67
435 436 9.261180 CTCCGTAAAGAAATATAAGAGCATTCA 57.739 33.333 0.00 0.00 0.00 2.57
436 437 9.261180 TCCGTAAAGAAATATAAGAGCATTCAG 57.739 33.333 0.00 0.00 0.00 3.02
437 438 9.261180 CCGTAAAGAAATATAAGAGCATTCAGA 57.739 33.333 0.00 0.00 0.00 3.27
449 450 9.979578 ATAAGAGCATTCAGATCACTAAAGTAG 57.020 33.333 0.00 0.00 34.30 2.57
450 451 7.416964 AGAGCATTCAGATCACTAAAGTAGT 57.583 36.000 0.00 0.00 40.28 2.73
525 526 7.378966 TCTAGCTATAACTTATGCTCGCAATT 58.621 34.615 0.00 0.00 37.02 2.32
574 577 5.968528 TGTGTGTTTGTTGTAAGACCTTT 57.031 34.783 0.00 0.00 0.00 3.11
608 611 2.379972 GCAGACTGCTAGAGGTCCTTA 58.620 52.381 20.41 0.00 40.96 2.69
609 612 2.100087 GCAGACTGCTAGAGGTCCTTAC 59.900 54.545 20.41 0.00 40.96 2.34
622 626 4.490706 AGGTCCTTACAGTACAAGAGGTT 58.509 43.478 0.00 0.00 0.00 3.50
651 655 2.603560 GCGCTAGCTCTACATTTCGTTT 59.396 45.455 13.93 0.00 41.01 3.60
655 659 5.499334 CGCTAGCTCTACATTTCGTTTTGAG 60.499 44.000 13.93 0.00 0.00 3.02
662 666 7.637907 GCTCTACATTTCGTTTTGAGATCAATC 59.362 37.037 0.00 0.00 35.55 2.67
667 671 8.571336 ACATTTCGTTTTGAGATCAATCTTTCT 58.429 29.630 0.00 0.00 37.25 2.52
674 678 8.685536 GTTTTGAGATCAATCTTTCTTTTGACG 58.314 33.333 0.00 0.00 37.25 4.35
697 701 5.668471 GATCTCACTCACAGATCCATTCAA 58.332 41.667 0.00 0.00 40.30 2.69
700 704 4.436332 TCACTCACAGATCCATTCAATCG 58.564 43.478 0.00 0.00 0.00 3.34
710 714 6.481313 CAGATCCATTCAATCGTATCAACTGT 59.519 38.462 0.00 0.00 0.00 3.55
716 720 3.993736 TCAATCGTATCAACTGTGTGTGG 59.006 43.478 0.00 0.00 0.00 4.17
822 826 1.118356 AGAGCTCCGATCCATCCACC 61.118 60.000 10.93 0.00 0.00 4.61
848 852 3.054434 TGTGTATAAGCCTCCACTTGCAT 60.054 43.478 0.00 0.00 0.00 3.96
865 1155 8.768955 CCACTTGCATATTACTTGATCTCTTAC 58.231 37.037 0.00 0.00 0.00 2.34
878 1168 1.549170 TCTCTTACGGGAGTTCTTGCC 59.451 52.381 0.00 0.00 43.33 4.52
915 1218 1.884579 AGCATTGACACAAAGAGCCAG 59.115 47.619 0.00 0.00 0.00 4.85
965 1272 6.459298 CCCATGCTATTCTTTGAGTTTAGCAG 60.459 42.308 8.65 2.40 45.85 4.24
996 1304 0.318441 TGCACTCTAGCAAAGCTCGT 59.682 50.000 0.00 0.00 42.46 4.18
1049 1357 1.234821 TTGATTGTCCTGTTCGGCAC 58.765 50.000 0.00 0.00 0.00 5.01
1184 1492 1.144708 TGTTGGGTCTGCAGGAAATGA 59.855 47.619 15.13 0.00 0.00 2.57
1233 1541 2.766229 GGTGGAGGAGGAGGAGGC 60.766 72.222 0.00 0.00 0.00 4.70
1246 1554 3.948719 GAGGCGGTGGTGGTGGAA 61.949 66.667 0.00 0.00 0.00 3.53
1373 1681 3.068691 TCGAGGCGGAGGACAAGG 61.069 66.667 0.00 0.00 0.00 3.61
1400 1708 3.825014 GGCTACGATGGATCTAGTGGTTA 59.175 47.826 0.00 0.00 0.00 2.85
1509 1817 3.003763 AACGGTGGAGGGAGAGGC 61.004 66.667 0.00 0.00 0.00 4.70
1533 1841 2.316108 GGTCAAAATGGTGGAAGTGGT 58.684 47.619 0.00 0.00 0.00 4.16
1563 1871 1.841556 TGGAGGAGGCGGAAACAGT 60.842 57.895 0.00 0.00 0.00 3.55
1588 1896 4.320870 TGGACACCCGTAAAATCTTCTTC 58.679 43.478 0.00 0.00 34.29 2.87
1590 1898 4.941873 GGACACCCGTAAAATCTTCTTCAT 59.058 41.667 0.00 0.00 0.00 2.57
1592 1900 4.630069 ACACCCGTAAAATCTTCTTCATCG 59.370 41.667 0.00 0.00 0.00 3.84
1612 1920 8.722480 TCATCGATCATTATATGGAAATGGAC 57.278 34.615 0.00 0.00 35.48 4.02
1738 2049 8.710835 TCTATATTTCTGTGCACGTATTTGAA 57.289 30.769 13.13 6.72 0.00 2.69
1785 2096 6.353404 TCATAGTCAATGTTACTGTGGTGA 57.647 37.500 0.00 0.00 36.89 4.02
1817 2128 7.442969 TGTTTCTTAAATGGTGAGACATTACGT 59.557 33.333 0.00 0.00 40.01 3.57
1884 2195 4.846779 ACGCACTGTATTGTTGGAAATT 57.153 36.364 0.00 0.00 0.00 1.82
1917 2228 8.590719 TGTTTTACAATAGTGACGTGATTACA 57.409 30.769 0.00 0.00 0.00 2.41
1934 2245 9.550811 CGTGATTACATTAATATAGTCTGCGTA 57.449 33.333 0.00 0.00 0.00 4.42
2073 2384 4.094294 GCTACTTGCATCAACACGGATTTA 59.906 41.667 0.00 0.00 42.31 1.40
2235 2551 9.051259 TGATATCCATTGTATTTTGGGGAAAAA 57.949 29.630 0.00 0.00 41.88 1.94
2245 2561 6.897706 ATTTTGGGGAAAAATGGTGAAATG 57.102 33.333 0.00 0.00 44.94 2.32
2336 2652 8.281212 ACTTTTCTACACTGAACTTTTCACAT 57.719 30.769 0.00 0.00 35.46 3.21
2349 2665 8.632679 TGAACTTTTCACATCAAGCTAAAAGAT 58.367 29.630 18.05 9.44 38.72 2.40
2350 2666 9.468532 GAACTTTTCACATCAAGCTAAAAGATT 57.531 29.630 18.05 10.69 38.72 2.40
2357 2673 9.023962 TCACATCAAGCTAAAAGATTTTACCAT 57.976 29.630 0.00 0.00 0.00 3.55
2374 2690 4.942761 ACCATGCCACATTAATTCCATC 57.057 40.909 0.00 0.00 0.00 3.51
2392 2708 1.757682 TCAACCATAAACCGATGCCC 58.242 50.000 0.00 0.00 0.00 5.36
2406 2722 3.510719 CGATGCCCGTTGAATCATTTTT 58.489 40.909 0.00 0.00 0.00 1.94
2431 2747 5.470047 TCCTTCTCTGAAAGTAACTGACC 57.530 43.478 0.00 0.00 33.76 4.02
2432 2748 4.283722 TCCTTCTCTGAAAGTAACTGACCC 59.716 45.833 0.00 0.00 33.76 4.46
2433 2749 4.284746 CCTTCTCTGAAAGTAACTGACCCT 59.715 45.833 0.00 0.00 33.76 4.34
2434 2750 5.470047 TTCTCTGAAAGTAACTGACCCTC 57.530 43.478 0.00 0.00 33.76 4.30
2435 2751 4.480115 TCTCTGAAAGTAACTGACCCTCA 58.520 43.478 0.00 0.00 33.76 3.86
2471 2812 7.038445 ACCAATGTTGAATACCAATCAAATCCA 60.038 33.333 0.00 0.00 38.44 3.41
2478 2819 6.156602 TGAATACCAATCAAATCCAAAGGCAT 59.843 34.615 0.00 0.00 0.00 4.40
2479 2820 4.476628 ACCAATCAAATCCAAAGGCATC 57.523 40.909 0.00 0.00 0.00 3.91
2491 2832 5.596845 TCCAAAGGCATCTACAACAAAAAC 58.403 37.500 0.00 0.00 0.00 2.43
2512 2853 8.625786 AAAACAGTTATAATTTGGGTCGTACT 57.374 30.769 0.00 0.00 0.00 2.73
2519 2860 8.820933 GTTATAATTTGGGTCGTACTAGAAACC 58.179 37.037 0.00 0.00 0.00 3.27
2520 2861 4.895668 ATTTGGGTCGTACTAGAAACCA 57.104 40.909 0.00 0.00 33.27 3.67
2543 2884 2.954868 CGGACGCTACACATCGGC 60.955 66.667 0.00 0.00 0.00 5.54
2544 2885 2.494918 GGACGCTACACATCGGCT 59.505 61.111 0.00 0.00 33.52 5.52
2569 2910 4.063689 GTGATGAATCGATTGGATCAGCT 58.936 43.478 21.61 1.44 33.02 4.24
2576 2917 1.595466 GATTGGATCAGCTGCCTCAG 58.405 55.000 9.47 0.00 34.12 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.634703 ACGCCACCATGACGCCAA 62.635 61.111 0.00 0.00 0.00 4.52
1 2 4.634703 AACGCCACCATGACGCCA 62.635 61.111 0.00 0.00 0.00 5.69
2 3 4.101790 CAACGCCACCATGACGCC 62.102 66.667 0.00 0.00 0.00 5.68
3 4 2.398554 ATCAACGCCACCATGACGC 61.399 57.895 0.00 0.00 0.00 5.19
4 5 1.425031 CATCAACGCCACCATGACG 59.575 57.895 0.00 0.00 0.00 4.35
5 6 1.802636 CCATCAACGCCACCATGAC 59.197 57.895 0.00 0.00 0.00 3.06
6 7 2.045708 GCCATCAACGCCACCATGA 61.046 57.895 0.00 0.00 0.00 3.07
7 8 2.491152 GCCATCAACGCCACCATG 59.509 61.111 0.00 0.00 0.00 3.66
8 9 3.133464 CGCCATCAACGCCACCAT 61.133 61.111 0.00 0.00 0.00 3.55
11 12 3.499737 CTCCGCCATCAACGCCAC 61.500 66.667 0.00 0.00 0.00 5.01
12 13 4.776322 CCTCCGCCATCAACGCCA 62.776 66.667 0.00 0.00 0.00 5.69
13 14 4.467084 TCCTCCGCCATCAACGCC 62.467 66.667 0.00 0.00 0.00 5.68
14 15 2.892425 CTCCTCCGCCATCAACGC 60.892 66.667 0.00 0.00 0.00 4.84
15 16 2.892425 GCTCCTCCGCCATCAACG 60.892 66.667 0.00 0.00 0.00 4.10
24 25 4.479993 CCTTGGCAGGCTCCTCCG 62.480 72.222 0.00 0.00 40.77 4.63
25 26 2.911926 AACCTTGGCAGGCTCCTCC 61.912 63.158 0.00 0.00 45.56 4.30
26 27 1.676967 CAACCTTGGCAGGCTCCTC 60.677 63.158 0.00 0.00 45.56 3.71
27 28 2.437897 CAACCTTGGCAGGCTCCT 59.562 61.111 0.00 0.00 45.56 3.69
28 29 2.677875 CCAACCTTGGCAGGCTCC 60.678 66.667 0.00 0.00 45.56 4.70
41 42 1.068055 CAAGCAGATTGAGGTGCCAAC 60.068 52.381 0.00 0.00 41.83 3.77
42 43 1.250328 CAAGCAGATTGAGGTGCCAA 58.750 50.000 0.00 0.00 41.83 4.52
43 44 0.609957 CCAAGCAGATTGAGGTGCCA 60.610 55.000 0.00 0.00 41.83 4.92
44 45 0.322816 TCCAAGCAGATTGAGGTGCC 60.323 55.000 0.00 0.00 41.83 5.01
45 46 1.093159 CTCCAAGCAGATTGAGGTGC 58.907 55.000 0.00 0.00 41.83 5.01
46 47 2.775911 TCTCCAAGCAGATTGAGGTG 57.224 50.000 0.00 0.00 41.83 4.00
47 48 2.092538 CCATCTCCAAGCAGATTGAGGT 60.093 50.000 0.00 0.00 41.83 3.85
48 49 2.172082 TCCATCTCCAAGCAGATTGAGG 59.828 50.000 0.00 0.00 41.83 3.86
49 50 3.204526 GTCCATCTCCAAGCAGATTGAG 58.795 50.000 0.00 0.00 41.83 3.02
50 51 2.092753 GGTCCATCTCCAAGCAGATTGA 60.093 50.000 0.00 0.00 41.83 2.57
51 52 2.295885 GGTCCATCTCCAAGCAGATTG 58.704 52.381 0.00 0.00 38.74 2.67
52 53 1.918262 TGGTCCATCTCCAAGCAGATT 59.082 47.619 0.00 0.00 30.07 2.40
53 54 1.489649 CTGGTCCATCTCCAAGCAGAT 59.510 52.381 0.00 0.00 40.14 2.90
54 55 0.907486 CTGGTCCATCTCCAAGCAGA 59.093 55.000 0.00 0.00 40.14 4.26
55 56 0.617413 ACTGGTCCATCTCCAAGCAG 59.383 55.000 0.00 0.00 42.65 4.24
56 57 0.325933 CACTGGTCCATCTCCAAGCA 59.674 55.000 0.00 0.00 34.35 3.91
57 58 0.393537 CCACTGGTCCATCTCCAAGC 60.394 60.000 0.00 0.00 34.35 4.01
58 59 1.279496 TCCACTGGTCCATCTCCAAG 58.721 55.000 0.00 0.00 34.35 3.61
59 60 1.630369 CTTCCACTGGTCCATCTCCAA 59.370 52.381 0.00 0.00 34.35 3.53
60 61 1.203300 TCTTCCACTGGTCCATCTCCA 60.203 52.381 0.00 0.00 0.00 3.86
61 62 1.573108 TCTTCCACTGGTCCATCTCC 58.427 55.000 0.00 0.00 0.00 3.71
62 63 2.158842 CCATCTTCCACTGGTCCATCTC 60.159 54.545 0.00 0.00 0.00 2.75
63 64 1.842562 CCATCTTCCACTGGTCCATCT 59.157 52.381 0.00 0.00 0.00 2.90
64 65 1.561542 ACCATCTTCCACTGGTCCATC 59.438 52.381 0.00 0.00 42.04 3.51
65 66 1.283029 CACCATCTTCCACTGGTCCAT 59.717 52.381 0.00 0.00 43.91 3.41
66 67 0.692476 CACCATCTTCCACTGGTCCA 59.308 55.000 0.00 0.00 43.91 4.02
67 68 0.035056 CCACCATCTTCCACTGGTCC 60.035 60.000 0.00 0.00 43.91 4.46
68 69 0.984230 TCCACCATCTTCCACTGGTC 59.016 55.000 0.00 0.00 43.91 4.02
69 70 0.987294 CTCCACCATCTTCCACTGGT 59.013 55.000 0.00 0.00 46.68 4.00
70 71 1.065854 GTCTCCACCATCTTCCACTGG 60.066 57.143 0.00 0.00 38.55 4.00
71 72 1.404717 CGTCTCCACCATCTTCCACTG 60.405 57.143 0.00 0.00 0.00 3.66
72 73 0.898320 CGTCTCCACCATCTTCCACT 59.102 55.000 0.00 0.00 0.00 4.00
73 74 0.895530 TCGTCTCCACCATCTTCCAC 59.104 55.000 0.00 0.00 0.00 4.02
74 75 0.895530 GTCGTCTCCACCATCTTCCA 59.104 55.000 0.00 0.00 0.00 3.53
75 76 0.895530 TGTCGTCTCCACCATCTTCC 59.104 55.000 0.00 0.00 0.00 3.46
76 77 1.272490 TGTGTCGTCTCCACCATCTTC 59.728 52.381 0.00 0.00 31.71 2.87
77 78 1.338107 TGTGTCGTCTCCACCATCTT 58.662 50.000 0.00 0.00 31.71 2.40
78 79 1.561643 ATGTGTCGTCTCCACCATCT 58.438 50.000 0.00 0.00 31.71 2.90
79 80 2.386661 AATGTGTCGTCTCCACCATC 57.613 50.000 0.00 0.00 31.71 3.51
80 81 2.038426 TCAAATGTGTCGTCTCCACCAT 59.962 45.455 0.00 0.00 31.71 3.55
81 82 1.414550 TCAAATGTGTCGTCTCCACCA 59.585 47.619 0.00 0.00 31.71 4.17
82 83 2.069273 CTCAAATGTGTCGTCTCCACC 58.931 52.381 0.00 0.00 31.71 4.61
83 84 2.476619 CACTCAAATGTGTCGTCTCCAC 59.523 50.000 0.00 0.00 33.61 4.02
84 85 2.754472 CACTCAAATGTGTCGTCTCCA 58.246 47.619 0.00 0.00 33.61 3.86
85 86 1.461127 GCACTCAAATGTGTCGTCTCC 59.539 52.381 0.00 0.00 39.89 3.71
86 87 1.125021 CGCACTCAAATGTGTCGTCTC 59.875 52.381 0.00 0.00 39.89 3.36
87 88 1.139989 CGCACTCAAATGTGTCGTCT 58.860 50.000 0.00 0.00 39.89 4.18
88 89 0.859232 ACGCACTCAAATGTGTCGTC 59.141 50.000 9.77 0.00 42.25 4.20
89 90 0.859232 GACGCACTCAAATGTGTCGT 59.141 50.000 13.43 13.43 46.77 4.34
90 91 3.639222 GACGCACTCAAATGTGTCG 57.361 52.632 3.92 0.00 46.77 4.35
92 93 1.867233 GTCTGACGCACTCAAATGTGT 59.133 47.619 0.00 0.00 45.84 3.72
93 94 1.195448 GGTCTGACGCACTCAAATGTG 59.805 52.381 1.07 0.00 40.62 3.21
94 95 1.512926 GGTCTGACGCACTCAAATGT 58.487 50.000 1.07 0.00 0.00 2.71
95 96 0.439985 CGGTCTGACGCACTCAAATG 59.560 55.000 1.07 0.00 0.00 2.32
96 97 0.670546 CCGGTCTGACGCACTCAAAT 60.671 55.000 1.07 0.00 0.00 2.32
97 98 1.300620 CCGGTCTGACGCACTCAAA 60.301 57.895 1.07 0.00 0.00 2.69
98 99 2.023414 AACCGGTCTGACGCACTCAA 62.023 55.000 8.04 0.00 0.00 3.02
99 100 2.023414 AAACCGGTCTGACGCACTCA 62.023 55.000 8.04 0.00 0.00 3.41
100 101 0.038892 TAAACCGGTCTGACGCACTC 60.039 55.000 8.04 0.00 0.00 3.51
101 102 0.606604 ATAAACCGGTCTGACGCACT 59.393 50.000 8.04 0.00 0.00 4.40
102 103 0.719465 CATAAACCGGTCTGACGCAC 59.281 55.000 8.04 0.00 0.00 5.34
103 104 1.017177 GCATAAACCGGTCTGACGCA 61.017 55.000 8.04 0.00 0.00 5.24
104 105 1.702491 GGCATAAACCGGTCTGACGC 61.702 60.000 8.04 7.54 0.00 5.19
105 106 1.087771 GGGCATAAACCGGTCTGACG 61.088 60.000 8.04 0.00 0.00 4.35
106 107 0.746923 GGGGCATAAACCGGTCTGAC 60.747 60.000 8.04 8.46 0.00 3.51
107 108 1.202099 TGGGGCATAAACCGGTCTGA 61.202 55.000 8.04 0.00 0.00 3.27
108 109 0.748005 CTGGGGCATAAACCGGTCTG 60.748 60.000 8.04 7.54 0.00 3.51
109 110 0.912487 TCTGGGGCATAAACCGGTCT 60.912 55.000 8.04 0.00 34.66 3.85
110 111 0.746923 GTCTGGGGCATAAACCGGTC 60.747 60.000 8.04 0.00 34.66 4.79
111 112 1.301954 GTCTGGGGCATAAACCGGT 59.698 57.895 0.00 0.00 34.66 5.28
112 113 1.453197 GGTCTGGGGCATAAACCGG 60.453 63.158 0.00 0.00 34.34 5.28
113 114 1.453197 GGGTCTGGGGCATAAACCG 60.453 63.158 0.00 0.00 0.00 4.44
114 115 1.453197 CGGGTCTGGGGCATAAACC 60.453 63.158 0.00 0.00 0.00 3.27
115 116 1.453197 CCGGGTCTGGGGCATAAAC 60.453 63.158 0.00 0.00 0.00 2.01
116 117 0.620990 TACCGGGTCTGGGGCATAAA 60.621 55.000 6.32 0.00 0.00 1.40
117 118 0.400815 ATACCGGGTCTGGGGCATAA 60.401 55.000 6.32 0.00 0.00 1.90
118 119 1.125093 CATACCGGGTCTGGGGCATA 61.125 60.000 6.32 0.00 0.00 3.14
119 120 2.039831 ATACCGGGTCTGGGGCAT 60.040 61.111 6.32 0.00 0.00 4.40
120 121 3.087253 CATACCGGGTCTGGGGCA 61.087 66.667 6.32 0.00 0.00 5.36
121 122 3.087906 ACATACCGGGTCTGGGGC 61.088 66.667 15.92 0.00 0.00 5.80
122 123 2.742116 CCACATACCGGGTCTGGGG 61.742 68.421 18.26 18.26 27.30 4.96
123 124 2.908015 CCACATACCGGGTCTGGG 59.092 66.667 15.92 12.10 0.00 4.45
124 125 1.046472 TAGCCACATACCGGGTCTGG 61.046 60.000 15.92 13.91 35.43 3.86
125 126 0.389391 CTAGCCACATACCGGGTCTG 59.611 60.000 6.32 7.03 35.43 3.51
126 127 0.759436 CCTAGCCACATACCGGGTCT 60.759 60.000 6.32 0.00 35.43 3.85
127 128 1.746517 CCTAGCCACATACCGGGTC 59.253 63.158 6.32 0.00 35.43 4.46
128 129 2.440817 GCCTAGCCACATACCGGGT 61.441 63.158 6.32 4.46 38.05 5.28
129 130 2.140792 AGCCTAGCCACATACCGGG 61.141 63.158 6.32 0.00 0.00 5.73
130 131 1.069765 CAGCCTAGCCACATACCGG 59.930 63.158 0.00 0.00 0.00 5.28
131 132 1.069765 CCAGCCTAGCCACATACCG 59.930 63.158 0.00 0.00 0.00 4.02
132 133 1.451936 CCCAGCCTAGCCACATACC 59.548 63.158 0.00 0.00 0.00 2.73
133 134 1.054406 TCCCCAGCCTAGCCACATAC 61.054 60.000 0.00 0.00 0.00 2.39
134 135 0.104462 ATCCCCAGCCTAGCCACATA 60.104 55.000 0.00 0.00 0.00 2.29
135 136 0.995675 AATCCCCAGCCTAGCCACAT 60.996 55.000 0.00 0.00 0.00 3.21
136 137 1.619363 AATCCCCAGCCTAGCCACA 60.619 57.895 0.00 0.00 0.00 4.17
137 138 1.149401 GAATCCCCAGCCTAGCCAC 59.851 63.158 0.00 0.00 0.00 5.01
138 139 2.078665 GGAATCCCCAGCCTAGCCA 61.079 63.158 0.00 0.00 34.14 4.75
139 140 2.839836 GGAATCCCCAGCCTAGCC 59.160 66.667 0.00 0.00 34.14 3.93
140 141 2.427753 CGGAATCCCCAGCCTAGC 59.572 66.667 0.00 0.00 34.14 3.42
141 142 3.151906 CCGGAATCCCCAGCCTAG 58.848 66.667 0.00 0.00 34.14 3.02
142 143 3.168528 GCCGGAATCCCCAGCCTA 61.169 66.667 5.05 0.00 34.14 3.93
144 145 3.662117 AAAGCCGGAATCCCCAGCC 62.662 63.158 5.05 0.00 34.14 4.85
145 146 1.682344 AAAAGCCGGAATCCCCAGC 60.682 57.895 5.05 0.00 34.14 4.85
146 147 0.323360 TCAAAAGCCGGAATCCCCAG 60.323 55.000 5.05 0.00 34.14 4.45
147 148 0.334676 ATCAAAAGCCGGAATCCCCA 59.665 50.000 5.05 0.00 34.14 4.96
148 149 0.746659 CATCAAAAGCCGGAATCCCC 59.253 55.000 5.05 0.00 0.00 4.81
149 150 1.474330 ACATCAAAAGCCGGAATCCC 58.526 50.000 5.05 0.00 0.00 3.85
150 151 3.066760 CCTAACATCAAAAGCCGGAATCC 59.933 47.826 5.05 0.00 0.00 3.01
151 152 3.945285 TCCTAACATCAAAAGCCGGAATC 59.055 43.478 5.05 0.00 0.00 2.52
152 153 3.963129 TCCTAACATCAAAAGCCGGAAT 58.037 40.909 5.05 0.00 0.00 3.01
153 154 3.426787 TCCTAACATCAAAAGCCGGAA 57.573 42.857 5.05 0.00 0.00 4.30
154 155 3.644966 ATCCTAACATCAAAAGCCGGA 57.355 42.857 5.05 0.00 0.00 5.14
155 156 4.275936 CCTAATCCTAACATCAAAAGCCGG 59.724 45.833 0.00 0.00 0.00 6.13
156 157 4.881850 ACCTAATCCTAACATCAAAAGCCG 59.118 41.667 0.00 0.00 0.00 5.52
157 158 5.885912 TCACCTAATCCTAACATCAAAAGCC 59.114 40.000 0.00 0.00 0.00 4.35
158 159 6.599638 ACTCACCTAATCCTAACATCAAAAGC 59.400 38.462 0.00 0.00 0.00 3.51
159 160 7.066284 CCACTCACCTAATCCTAACATCAAAAG 59.934 40.741 0.00 0.00 0.00 2.27
160 161 6.884295 CCACTCACCTAATCCTAACATCAAAA 59.116 38.462 0.00 0.00 0.00 2.44
161 162 6.012858 ACCACTCACCTAATCCTAACATCAAA 60.013 38.462 0.00 0.00 0.00 2.69
162 163 5.487488 ACCACTCACCTAATCCTAACATCAA 59.513 40.000 0.00 0.00 0.00 2.57
163 164 5.030147 ACCACTCACCTAATCCTAACATCA 58.970 41.667 0.00 0.00 0.00 3.07
164 165 5.364157 AGACCACTCACCTAATCCTAACATC 59.636 44.000 0.00 0.00 0.00 3.06
165 166 5.129485 CAGACCACTCACCTAATCCTAACAT 59.871 44.000 0.00 0.00 0.00 2.71
166 167 4.466370 CAGACCACTCACCTAATCCTAACA 59.534 45.833 0.00 0.00 0.00 2.41
167 168 4.141914 CCAGACCACTCACCTAATCCTAAC 60.142 50.000 0.00 0.00 0.00 2.34
168 169 4.030913 CCAGACCACTCACCTAATCCTAA 58.969 47.826 0.00 0.00 0.00 2.69
169 170 3.630054 CCCAGACCACTCACCTAATCCTA 60.630 52.174 0.00 0.00 0.00 2.94
170 171 2.472029 CCAGACCACTCACCTAATCCT 58.528 52.381 0.00 0.00 0.00 3.24
171 172 1.486726 CCCAGACCACTCACCTAATCC 59.513 57.143 0.00 0.00 0.00 3.01
172 173 2.188817 ACCCAGACCACTCACCTAATC 58.811 52.381 0.00 0.00 0.00 1.75
173 174 2.344093 ACCCAGACCACTCACCTAAT 57.656 50.000 0.00 0.00 0.00 1.73
174 175 2.111255 ACTACCCAGACCACTCACCTAA 59.889 50.000 0.00 0.00 0.00 2.69
175 176 1.714787 ACTACCCAGACCACTCACCTA 59.285 52.381 0.00 0.00 0.00 3.08
176 177 0.487772 ACTACCCAGACCACTCACCT 59.512 55.000 0.00 0.00 0.00 4.00
177 178 0.608640 CACTACCCAGACCACTCACC 59.391 60.000 0.00 0.00 0.00 4.02
178 179 0.608640 CCACTACCCAGACCACTCAC 59.391 60.000 0.00 0.00 0.00 3.51
179 180 0.190069 ACCACTACCCAGACCACTCA 59.810 55.000 0.00 0.00 0.00 3.41
180 181 0.896226 GACCACTACCCAGACCACTC 59.104 60.000 0.00 0.00 0.00 3.51
181 182 0.487772 AGACCACTACCCAGACCACT 59.512 55.000 0.00 0.00 0.00 4.00
182 183 2.100989 CTAGACCACTACCCAGACCAC 58.899 57.143 0.00 0.00 0.00 4.16
183 184 1.618888 GCTAGACCACTACCCAGACCA 60.619 57.143 0.00 0.00 0.00 4.02
184 185 1.112950 GCTAGACCACTACCCAGACC 58.887 60.000 0.00 0.00 0.00 3.85
185 186 2.146920 AGCTAGACCACTACCCAGAC 57.853 55.000 0.00 0.00 0.00 3.51
186 187 2.423088 GCTAGCTAGACCACTACCCAGA 60.423 54.545 25.15 0.00 0.00 3.86
187 188 1.957877 GCTAGCTAGACCACTACCCAG 59.042 57.143 25.15 0.00 0.00 4.45
188 189 1.286849 TGCTAGCTAGACCACTACCCA 59.713 52.381 25.15 6.39 0.00 4.51
189 190 1.682323 GTGCTAGCTAGACCACTACCC 59.318 57.143 25.15 3.69 0.00 3.69
190 191 1.682323 GGTGCTAGCTAGACCACTACC 59.318 57.143 25.15 15.90 0.00 3.18
191 192 1.682323 GGGTGCTAGCTAGACCACTAC 59.318 57.143 28.48 19.06 0.00 2.73
192 193 1.411216 GGGGTGCTAGCTAGACCACTA 60.411 57.143 28.48 8.57 29.77 2.74
193 194 0.688087 GGGGTGCTAGCTAGACCACT 60.688 60.000 28.48 0.00 29.77 4.00
194 195 0.688087 AGGGGTGCTAGCTAGACCAC 60.688 60.000 28.48 27.01 32.86 4.16
195 196 0.042731 AAGGGGTGCTAGCTAGACCA 59.957 55.000 28.48 16.76 0.00 4.02
196 197 0.753867 GAAGGGGTGCTAGCTAGACC 59.246 60.000 25.15 24.19 0.00 3.85
197 198 1.486211 TGAAGGGGTGCTAGCTAGAC 58.514 55.000 25.15 17.58 0.00 2.59
198 199 2.320781 GATGAAGGGGTGCTAGCTAGA 58.679 52.381 25.15 6.86 0.00 2.43
199 200 2.042464 TGATGAAGGGGTGCTAGCTAG 58.958 52.381 16.84 16.84 0.00 3.42
200 201 2.174685 TGATGAAGGGGTGCTAGCTA 57.825 50.000 17.23 0.00 0.00 3.32
201 202 1.516110 ATGATGAAGGGGTGCTAGCT 58.484 50.000 17.23 0.00 0.00 3.32
202 203 3.341823 CATATGATGAAGGGGTGCTAGC 58.658 50.000 8.10 8.10 0.00 3.42
203 204 3.584406 TCCATATGATGAAGGGGTGCTAG 59.416 47.826 3.65 0.00 0.00 3.42
204 205 3.597182 TCCATATGATGAAGGGGTGCTA 58.403 45.455 3.65 0.00 0.00 3.49
205 206 2.421725 TCCATATGATGAAGGGGTGCT 58.578 47.619 3.65 0.00 0.00 4.40
206 207 2.957402 TCCATATGATGAAGGGGTGC 57.043 50.000 3.65 0.00 0.00 5.01
207 208 4.784838 TCCTATCCATATGATGAAGGGGTG 59.215 45.833 3.65 0.00 34.76 4.61
208 209 5.035556 CTCCTATCCATATGATGAAGGGGT 58.964 45.833 3.65 0.00 34.76 4.95
209 210 5.035556 ACTCCTATCCATATGATGAAGGGG 58.964 45.833 3.65 7.84 34.76 4.79
210 211 6.183360 GCTACTCCTATCCATATGATGAAGGG 60.183 46.154 3.65 1.54 34.76 3.95
211 212 6.460814 CGCTACTCCTATCCATATGATGAAGG 60.461 46.154 3.65 5.74 34.76 3.46
212 213 6.319911 TCGCTACTCCTATCCATATGATGAAG 59.680 42.308 3.65 0.00 34.76 3.02
213 214 6.095580 GTCGCTACTCCTATCCATATGATGAA 59.904 42.308 3.65 0.00 34.76 2.57
214 215 5.590663 GTCGCTACTCCTATCCATATGATGA 59.409 44.000 3.65 0.00 34.76 2.92
215 216 5.358160 TGTCGCTACTCCTATCCATATGATG 59.642 44.000 3.65 0.00 34.76 3.07
216 217 5.510430 TGTCGCTACTCCTATCCATATGAT 58.490 41.667 3.65 0.00 37.49 2.45
217 218 4.918588 TGTCGCTACTCCTATCCATATGA 58.081 43.478 3.65 0.00 0.00 2.15
218 219 5.843673 ATGTCGCTACTCCTATCCATATG 57.156 43.478 0.00 0.00 0.00 1.78
219 220 7.063593 ACATATGTCGCTACTCCTATCCATAT 58.936 38.462 1.41 0.00 0.00 1.78
220 221 6.424032 ACATATGTCGCTACTCCTATCCATA 58.576 40.000 1.41 0.00 0.00 2.74
221 222 5.265191 ACATATGTCGCTACTCCTATCCAT 58.735 41.667 1.41 0.00 0.00 3.41
222 223 4.663334 ACATATGTCGCTACTCCTATCCA 58.337 43.478 1.41 0.00 0.00 3.41
223 224 5.403246 CAACATATGTCGCTACTCCTATCC 58.597 45.833 9.23 0.00 0.00 2.59
224 225 4.859798 GCAACATATGTCGCTACTCCTATC 59.140 45.833 11.60 0.00 0.00 2.08
225 226 4.322049 GGCAACATATGTCGCTACTCCTAT 60.322 45.833 17.86 0.00 0.00 2.57
226 227 3.005472 GGCAACATATGTCGCTACTCCTA 59.995 47.826 17.86 0.00 0.00 2.94
227 228 2.224066 GGCAACATATGTCGCTACTCCT 60.224 50.000 17.86 0.00 0.00 3.69
228 229 2.135933 GGCAACATATGTCGCTACTCC 58.864 52.381 17.86 0.00 0.00 3.85
229 230 3.099267 AGGCAACATATGTCGCTACTC 57.901 47.619 17.86 1.95 39.19 2.59
230 231 3.889538 TCTAGGCAACATATGTCGCTACT 59.110 43.478 17.86 10.19 39.19 2.57
231 232 4.238761 TCTAGGCAACATATGTCGCTAC 57.761 45.455 17.86 3.02 39.19 3.58
232 233 4.321974 CCATCTAGGCAACATATGTCGCTA 60.322 45.833 17.86 7.94 39.19 4.26
233 234 3.555795 CCATCTAGGCAACATATGTCGCT 60.556 47.826 17.86 7.24 39.19 4.93
234 235 2.738846 CCATCTAGGCAACATATGTCGC 59.261 50.000 10.42 10.42 39.19 5.19
235 236 3.742882 CACCATCTAGGCAACATATGTCG 59.257 47.826 9.23 0.00 43.14 4.35
236 237 4.067896 CCACCATCTAGGCAACATATGTC 58.932 47.826 9.23 0.00 43.14 3.06
237 238 3.716353 TCCACCATCTAGGCAACATATGT 59.284 43.478 1.41 1.41 43.14 2.29
238 239 4.356405 TCCACCATCTAGGCAACATATG 57.644 45.455 0.00 0.00 43.14 1.78
239 240 5.073554 TGAATCCACCATCTAGGCAACATAT 59.926 40.000 0.00 0.00 43.14 1.78
240 241 4.411869 TGAATCCACCATCTAGGCAACATA 59.588 41.667 0.00 0.00 43.14 2.29
241 242 3.202818 TGAATCCACCATCTAGGCAACAT 59.797 43.478 0.00 0.00 43.14 2.71
242 243 2.575735 TGAATCCACCATCTAGGCAACA 59.424 45.455 0.00 0.00 43.14 3.33
243 244 3.209410 CTGAATCCACCATCTAGGCAAC 58.791 50.000 0.00 0.00 43.14 4.17
244 245 2.173356 CCTGAATCCACCATCTAGGCAA 59.827 50.000 0.00 0.00 43.14 4.52
245 246 1.770658 CCTGAATCCACCATCTAGGCA 59.229 52.381 0.00 0.00 43.14 4.75
246 247 1.544314 GCCTGAATCCACCATCTAGGC 60.544 57.143 0.00 0.00 43.14 3.93
247 248 2.053244 AGCCTGAATCCACCATCTAGG 58.947 52.381 0.00 0.00 45.67 3.02
248 249 3.853355 AAGCCTGAATCCACCATCTAG 57.147 47.619 0.00 0.00 0.00 2.43
249 250 5.132648 ACAATAAGCCTGAATCCACCATCTA 59.867 40.000 0.00 0.00 0.00 1.98
250 251 4.079558 ACAATAAGCCTGAATCCACCATCT 60.080 41.667 0.00 0.00 0.00 2.90
251 252 4.210331 ACAATAAGCCTGAATCCACCATC 58.790 43.478 0.00 0.00 0.00 3.51
252 253 4.255510 ACAATAAGCCTGAATCCACCAT 57.744 40.909 0.00 0.00 0.00 3.55
253 254 3.737559 ACAATAAGCCTGAATCCACCA 57.262 42.857 0.00 0.00 0.00 4.17
254 255 3.763897 ACAACAATAAGCCTGAATCCACC 59.236 43.478 0.00 0.00 0.00 4.61
255 256 6.072175 TGTTACAACAATAAGCCTGAATCCAC 60.072 38.462 0.00 0.00 35.67 4.02
256 257 6.007076 TGTTACAACAATAAGCCTGAATCCA 58.993 36.000 0.00 0.00 35.67 3.41
257 258 6.151144 AGTGTTACAACAATAAGCCTGAATCC 59.849 38.462 0.00 0.00 41.21 3.01
258 259 7.145932 AGTGTTACAACAATAAGCCTGAATC 57.854 36.000 0.00 0.00 41.21 2.52
259 260 7.524717 AAGTGTTACAACAATAAGCCTGAAT 57.475 32.000 0.00 0.00 41.21 2.57
260 261 6.952773 AAGTGTTACAACAATAAGCCTGAA 57.047 33.333 0.00 0.00 41.21 3.02
261 262 6.320164 ACAAAGTGTTACAACAATAAGCCTGA 59.680 34.615 0.00 0.00 41.21 3.86
262 263 6.503524 ACAAAGTGTTACAACAATAAGCCTG 58.496 36.000 0.00 0.00 41.21 4.85
263 264 6.709018 ACAAAGTGTTACAACAATAAGCCT 57.291 33.333 0.00 0.00 41.21 4.58
264 265 7.593644 CCTTACAAAGTGTTACAACAATAAGCC 59.406 37.037 0.00 0.00 41.21 4.35
265 266 8.132995 ACCTTACAAAGTGTTACAACAATAAGC 58.867 33.333 0.00 0.00 41.21 3.09
268 269 9.398538 AGAACCTTACAAAGTGTTACAACAATA 57.601 29.630 0.00 0.00 41.21 1.90
269 270 8.288689 AGAACCTTACAAAGTGTTACAACAAT 57.711 30.769 0.00 0.00 41.21 2.71
270 271 7.413219 CGAGAACCTTACAAAGTGTTACAACAA 60.413 37.037 0.00 0.00 41.21 2.83
271 272 6.036300 CGAGAACCTTACAAAGTGTTACAACA 59.964 38.462 0.00 0.00 36.38 3.33
272 273 6.256321 TCGAGAACCTTACAAAGTGTTACAAC 59.744 38.462 0.00 0.00 0.00 3.32
273 274 6.339730 TCGAGAACCTTACAAAGTGTTACAA 58.660 36.000 0.00 0.00 0.00 2.41
274 275 5.904941 TCGAGAACCTTACAAAGTGTTACA 58.095 37.500 0.00 0.00 0.00 2.41
275 276 6.211515 TCTCGAGAACCTTACAAAGTGTTAC 58.788 40.000 14.01 0.00 0.00 2.50
276 277 6.395426 TCTCGAGAACCTTACAAAGTGTTA 57.605 37.500 14.01 0.00 0.00 2.41
277 278 5.272283 TCTCGAGAACCTTACAAAGTGTT 57.728 39.130 14.01 0.00 0.00 3.32
278 279 4.931661 TCTCGAGAACCTTACAAAGTGT 57.068 40.909 14.01 0.00 0.00 3.55
279 280 7.884816 TTATTCTCGAGAACCTTACAAAGTG 57.115 36.000 29.24 0.00 36.80 3.16
280 281 8.311836 TGATTATTCTCGAGAACCTTACAAAGT 58.688 33.333 29.24 12.31 36.80 2.66
281 282 8.703604 TGATTATTCTCGAGAACCTTACAAAG 57.296 34.615 29.24 0.00 36.80 2.77
282 283 9.667107 ATTGATTATTCTCGAGAACCTTACAAA 57.333 29.630 29.24 17.16 36.80 2.83
287 288 9.892130 ACTTTATTGATTATTCTCGAGAACCTT 57.108 29.630 29.24 16.61 36.80 3.50
288 289 9.319143 CACTTTATTGATTATTCTCGAGAACCT 57.681 33.333 29.24 17.33 36.80 3.50
289 290 9.314321 TCACTTTATTGATTATTCTCGAGAACC 57.686 33.333 29.24 18.03 36.80 3.62
291 292 9.314321 GGTCACTTTATTGATTATTCTCGAGAA 57.686 33.333 28.85 28.85 38.56 2.87
292 293 7.648112 CGGTCACTTTATTGATTATTCTCGAGA 59.352 37.037 12.08 12.08 0.00 4.04
293 294 7.435488 ACGGTCACTTTATTGATTATTCTCGAG 59.565 37.037 5.93 5.93 0.00 4.04
294 295 7.262772 ACGGTCACTTTATTGATTATTCTCGA 58.737 34.615 0.00 0.00 0.00 4.04
295 296 7.464830 ACGGTCACTTTATTGATTATTCTCG 57.535 36.000 0.00 0.00 0.00 4.04
297 298 8.774586 GCATACGGTCACTTTATTGATTATTCT 58.225 33.333 0.00 0.00 0.00 2.40
298 299 8.556194 TGCATACGGTCACTTTATTGATTATTC 58.444 33.333 0.00 0.00 0.00 1.75
299 300 8.445275 TGCATACGGTCACTTTATTGATTATT 57.555 30.769 0.00 0.00 0.00 1.40
300 301 8.621532 ATGCATACGGTCACTTTATTGATTAT 57.378 30.769 0.00 0.00 0.00 1.28
301 302 7.931407 AGATGCATACGGTCACTTTATTGATTA 59.069 33.333 0.00 0.00 0.00 1.75
302 303 6.767902 AGATGCATACGGTCACTTTATTGATT 59.232 34.615 0.00 0.00 0.00 2.57
303 304 6.291377 AGATGCATACGGTCACTTTATTGAT 58.709 36.000 0.00 0.00 0.00 2.57
304 305 5.670485 AGATGCATACGGTCACTTTATTGA 58.330 37.500 0.00 0.00 0.00 2.57
305 306 5.050091 GGAGATGCATACGGTCACTTTATTG 60.050 44.000 0.00 0.00 0.00 1.90
306 307 5.057149 GGAGATGCATACGGTCACTTTATT 58.943 41.667 0.00 0.00 0.00 1.40
307 308 4.503296 GGGAGATGCATACGGTCACTTTAT 60.503 45.833 0.00 0.00 0.00 1.40
308 309 3.181469 GGGAGATGCATACGGTCACTTTA 60.181 47.826 0.00 0.00 0.00 1.85
309 310 2.420129 GGGAGATGCATACGGTCACTTT 60.420 50.000 0.00 0.00 0.00 2.66
310 311 1.139058 GGGAGATGCATACGGTCACTT 59.861 52.381 0.00 0.00 0.00 3.16
311 312 0.753262 GGGAGATGCATACGGTCACT 59.247 55.000 0.00 0.00 0.00 3.41
312 313 0.464036 TGGGAGATGCATACGGTCAC 59.536 55.000 0.00 0.00 0.00 3.67
313 314 0.752658 CTGGGAGATGCATACGGTCA 59.247 55.000 0.00 0.00 0.00 4.02
314 315 1.040646 TCTGGGAGATGCATACGGTC 58.959 55.000 0.00 0.00 0.00 4.79
315 316 1.345741 CATCTGGGAGATGCATACGGT 59.654 52.381 0.00 0.00 44.69 4.83
316 317 2.090400 CATCTGGGAGATGCATACGG 57.910 55.000 0.00 0.00 44.69 4.02
324 325 1.417288 GGCCTCTGCATCTGGGAGAT 61.417 60.000 0.00 0.00 43.58 2.75
325 326 2.068821 GGCCTCTGCATCTGGGAGA 61.069 63.158 0.00 0.00 42.24 3.71
326 327 2.509916 GGCCTCTGCATCTGGGAG 59.490 66.667 0.00 0.00 40.13 4.30
327 328 3.473647 CGGCCTCTGCATCTGGGA 61.474 66.667 0.00 0.00 40.13 4.37
328 329 4.559063 CCGGCCTCTGCATCTGGG 62.559 72.222 0.00 0.00 40.13 4.45
329 330 4.559063 CCCGGCCTCTGCATCTGG 62.559 72.222 0.00 0.00 40.13 3.86
330 331 4.559063 CCCCGGCCTCTGCATCTG 62.559 72.222 0.00 0.00 40.13 2.90
336 337 3.866582 GATGACCCCCGGCCTCTG 61.867 72.222 0.00 0.00 0.00 3.35
342 343 1.571773 AAAAGGAGGATGACCCCCGG 61.572 60.000 0.00 0.00 36.73 5.73
343 344 0.107165 GAAAAGGAGGATGACCCCCG 60.107 60.000 0.00 0.00 36.73 5.73
344 345 1.299939 AGAAAAGGAGGATGACCCCC 58.700 55.000 0.00 0.00 36.73 5.40
345 346 4.586306 TTTAGAAAAGGAGGATGACCCC 57.414 45.455 0.00 0.00 36.73 4.95
387 388 8.953313 CGGAGGGAGTAACAAATAAAATAAACT 58.047 33.333 0.00 0.00 0.00 2.66
388 389 8.733458 ACGGAGGGAGTAACAAATAAAATAAAC 58.267 33.333 0.00 0.00 0.00 2.01
389 390 8.866970 ACGGAGGGAGTAACAAATAAAATAAA 57.133 30.769 0.00 0.00 0.00 1.40
390 391 9.956640 TTACGGAGGGAGTAACAAATAAAATAA 57.043 29.630 0.00 0.00 0.00 1.40
391 392 9.956640 TTTACGGAGGGAGTAACAAATAAAATA 57.043 29.630 0.00 0.00 34.25 1.40
392 393 8.866970 TTTACGGAGGGAGTAACAAATAAAAT 57.133 30.769 0.00 0.00 34.25 1.82
393 394 8.156165 TCTTTACGGAGGGAGTAACAAATAAAA 58.844 33.333 0.00 0.00 34.25 1.52
394 395 7.678837 TCTTTACGGAGGGAGTAACAAATAAA 58.321 34.615 0.00 0.00 34.25 1.40
395 396 7.243604 TCTTTACGGAGGGAGTAACAAATAA 57.756 36.000 0.00 0.00 34.25 1.40
396 397 6.855763 TCTTTACGGAGGGAGTAACAAATA 57.144 37.500 0.00 0.00 34.25 1.40
397 398 5.750352 TCTTTACGGAGGGAGTAACAAAT 57.250 39.130 0.00 0.00 34.25 2.32
398 399 5.549742 TTCTTTACGGAGGGAGTAACAAA 57.450 39.130 0.00 0.00 34.25 2.83
399 400 5.549742 TTTCTTTACGGAGGGAGTAACAA 57.450 39.130 0.00 0.00 34.25 2.83
400 401 5.750352 ATTTCTTTACGGAGGGAGTAACA 57.250 39.130 0.00 0.00 34.25 2.41
401 402 9.473640 CTTATATTTCTTTACGGAGGGAGTAAC 57.526 37.037 0.00 0.00 34.25 2.50
402 403 9.425248 TCTTATATTTCTTTACGGAGGGAGTAA 57.575 33.333 0.00 0.00 32.84 2.24
403 404 9.075678 CTCTTATATTTCTTTACGGAGGGAGTA 57.924 37.037 0.00 0.00 0.00 2.59
404 405 7.471679 GCTCTTATATTTCTTTACGGAGGGAGT 60.472 40.741 0.00 0.00 0.00 3.85
405 406 6.869388 GCTCTTATATTTCTTTACGGAGGGAG 59.131 42.308 0.00 0.00 0.00 4.30
406 407 6.325545 TGCTCTTATATTTCTTTACGGAGGGA 59.674 38.462 0.00 0.00 0.00 4.20
407 408 6.522054 TGCTCTTATATTTCTTTACGGAGGG 58.478 40.000 0.00 0.00 0.00 4.30
408 409 8.608844 AATGCTCTTATATTTCTTTACGGAGG 57.391 34.615 0.00 0.00 0.00 4.30
409 410 9.261180 TGAATGCTCTTATATTTCTTTACGGAG 57.739 33.333 0.00 0.00 0.00 4.63
410 411 9.261180 CTGAATGCTCTTATATTTCTTTACGGA 57.739 33.333 0.00 0.00 0.00 4.69
411 412 9.261180 TCTGAATGCTCTTATATTTCTTTACGG 57.739 33.333 0.00 0.00 0.00 4.02
423 424 9.979578 CTACTTTAGTGATCTGAATGCTCTTAT 57.020 33.333 0.00 0.00 0.00 1.73
424 425 8.972127 ACTACTTTAGTGATCTGAATGCTCTTA 58.028 33.333 0.00 0.00 37.69 2.10
425 426 7.846066 ACTACTTTAGTGATCTGAATGCTCTT 58.154 34.615 0.00 0.00 37.69 2.85
426 427 7.416964 ACTACTTTAGTGATCTGAATGCTCT 57.583 36.000 0.00 0.00 37.69 4.09
458 459 9.802039 TCCCTTTGTAAACAAATATAAGAGTGT 57.198 29.630 8.62 0.00 43.92 3.55
512 513 6.019779 AGTGGTTTTTAATTGCGAGCATAA 57.980 33.333 0.00 0.00 0.00 1.90
608 611 3.833070 CTCCTACCAACCTCTTGTACTGT 59.167 47.826 0.00 0.00 0.00 3.55
609 612 3.368531 GCTCCTACCAACCTCTTGTACTG 60.369 52.174 0.00 0.00 0.00 2.74
639 643 9.831737 AAAGATTGATCTCAAAACGAAATGTAG 57.168 29.630 0.00 0.00 39.55 2.74
651 655 7.728847 TCGTCAAAAGAAAGATTGATCTCAA 57.271 32.000 0.00 0.00 37.82 3.02
655 659 7.902403 GTGAGATCGTCAAAAGAAAGATTGATC 59.098 37.037 0.00 0.00 37.82 2.92
662 666 5.463392 TGTGAGTGAGATCGTCAAAAGAAAG 59.537 40.000 0.00 0.00 36.74 2.62
667 671 4.584327 TCTGTGAGTGAGATCGTCAAAA 57.416 40.909 0.00 0.00 36.74 2.44
674 678 5.273674 TGAATGGATCTGTGAGTGAGATC 57.726 43.478 0.00 0.00 43.55 2.75
697 701 3.678056 ACCACACACAGTTGATACGAT 57.322 42.857 0.00 0.00 0.00 3.73
700 704 4.447724 CACAGTACCACACACAGTTGATAC 59.552 45.833 0.00 0.00 0.00 2.24
710 714 0.313987 CGAGAGCACAGTACCACACA 59.686 55.000 0.00 0.00 0.00 3.72
822 826 4.207891 AGTGGAGGCTTATACACAACTG 57.792 45.455 12.70 0.00 36.35 3.16
848 852 7.778853 AGAACTCCCGTAAGAGATCAAGTAATA 59.221 37.037 0.00 0.00 37.95 0.98
865 1155 3.636313 TACGCGGCAAGAACTCCCG 62.636 63.158 12.47 8.71 44.58 5.14
878 1168 1.058748 CTTCGTTGCATGGTACGCG 59.941 57.895 3.53 3.53 37.66 6.01
915 1218 4.689612 TTATAGGACCAGAAGCCATGAC 57.310 45.455 0.00 0.00 0.00 3.06
926 1229 7.461043 AGAATAGCATGGGTATTTATAGGACCA 59.539 37.037 0.00 0.00 36.53 4.02
965 1272 4.050553 GCTAGAGTGCAAGATGAGATGTC 58.949 47.826 0.00 0.00 0.00 3.06
996 1304 5.039920 AGCATTTAGTGACTGCCATATCA 57.960 39.130 0.00 0.00 36.56 2.15
1246 1554 1.133606 ACGTCCAGACCCACCATTTTT 60.134 47.619 0.00 0.00 0.00 1.94
1320 1628 2.952978 ACTAGCACTAGAAGATCCACCG 59.047 50.000 11.59 0.00 36.97 4.94
1373 1681 4.393680 CACTAGATCCATCGTAGCCTCTAC 59.606 50.000 0.00 0.00 0.00 2.59
1400 1708 4.059304 TGCCGCCACCATTCCCAT 62.059 61.111 0.00 0.00 0.00 4.00
1428 1736 3.181445 ACCCATTGTTTGACTCACTAGCA 60.181 43.478 0.00 0.00 0.00 3.49
1509 1817 4.309099 CACTTCCACCATTTTGACCATTG 58.691 43.478 0.00 0.00 0.00 2.82
1533 1841 3.636231 CCTCCACCTTCGCCACCA 61.636 66.667 0.00 0.00 0.00 4.17
1563 1871 3.992943 AGATTTTACGGGTGTCCATCA 57.007 42.857 0.00 0.00 0.00 3.07
1588 1896 8.728337 AGTCCATTTCCATATAATGATCGATG 57.272 34.615 0.54 0.00 35.49 3.84
1590 1898 8.374743 TGAAGTCCATTTCCATATAATGATCGA 58.625 33.333 0.00 0.00 35.49 3.59
1612 1920 3.252974 AGGCACTAGACCGAATTGAAG 57.747 47.619 0.00 0.00 36.02 3.02
1756 2067 7.496920 CCACAGTAACATTGACTATGATGATGT 59.503 37.037 3.80 0.00 37.69 3.06
1761 2072 6.946340 TCACCACAGTAACATTGACTATGAT 58.054 36.000 3.80 0.00 37.69 2.45
1785 2096 8.474025 TGTCTCACCATTTAAGAAACACAATTT 58.526 29.630 0.00 0.00 0.00 1.82
1845 2156 4.324402 GTGCGTTCAAATCAATTGGATGAC 59.676 41.667 5.42 3.16 35.80 3.06
1884 2195 8.779303 ACGTCACTATTGTAAAACATCATCAAA 58.221 29.630 0.00 0.00 0.00 2.69
1908 2219 8.449085 ACGCAGACTATATTAATGTAATCACG 57.551 34.615 11.63 11.63 0.00 4.35
1948 2259 9.715121 TTCGACTTTAAACTCCAAACTATGTAT 57.285 29.630 0.00 0.00 0.00 2.29
1949 2260 9.715121 ATTCGACTTTAAACTCCAAACTATGTA 57.285 29.630 0.00 0.00 0.00 2.29
1950 2261 8.617290 ATTCGACTTTAAACTCCAAACTATGT 57.383 30.769 0.00 0.00 0.00 2.29
2013 2324 5.186797 TGCAAAGGTTTTATTATGGACTGGG 59.813 40.000 0.00 0.00 0.00 4.45
2156 2472 5.047847 ACCGATCGACCATTTATGTTACAG 58.952 41.667 18.66 0.00 0.00 2.74
2166 2482 3.887110 TGTGAGTATACCGATCGACCATT 59.113 43.478 18.66 0.00 0.00 3.16
2205 2521 9.889388 TCCCCAAAATACAATGGATATCATTTA 57.111 29.630 4.83 0.69 43.04 1.40
2212 2528 8.270744 CCATTTTTCCCCAAAATACAATGGATA 58.729 33.333 0.00 0.00 42.28 2.59
2349 2665 6.611613 TGGAATTAATGTGGCATGGTAAAA 57.388 33.333 0.00 0.00 0.00 1.52
2350 2666 6.382282 TGATGGAATTAATGTGGCATGGTAAA 59.618 34.615 0.00 0.00 0.00 2.01
2357 2673 4.092279 TGGTTGATGGAATTAATGTGGCA 58.908 39.130 0.00 0.00 0.00 4.92
2374 2690 0.380378 CGGGCATCGGTTTATGGTTG 59.620 55.000 0.00 0.00 34.75 3.77
2406 2722 6.766467 GGTCAGTTACTTTCAGAGAAGGAAAA 59.234 38.462 0.00 0.00 31.52 2.29
2407 2723 6.289064 GGTCAGTTACTTTCAGAGAAGGAAA 58.711 40.000 0.00 0.00 31.52 3.13
2428 2744 5.888161 ACATTGGTAAGAATTGATGAGGGTC 59.112 40.000 0.00 0.00 0.00 4.46
2429 2745 5.831103 ACATTGGTAAGAATTGATGAGGGT 58.169 37.500 0.00 0.00 0.00 4.34
2431 2747 7.395190 TCAACATTGGTAAGAATTGATGAGG 57.605 36.000 0.00 0.00 0.00 3.86
2434 2750 9.520204 GGTATTCAACATTGGTAAGAATTGATG 57.480 33.333 0.00 0.00 35.13 3.07
2435 2751 9.253832 TGGTATTCAACATTGGTAAGAATTGAT 57.746 29.630 0.00 0.00 35.13 2.57
2471 2812 6.220726 ACTGTTTTTGTTGTAGATGCCTTT 57.779 33.333 0.00 0.00 0.00 3.11
2491 2832 9.590451 TTTCTAGTACGACCCAAATTATAACTG 57.410 33.333 0.00 0.00 0.00 3.16
2536 2877 2.800985 CGATTCATCACTCAGCCGATGT 60.801 50.000 4.92 0.00 39.99 3.06
2538 2879 1.683385 TCGATTCATCACTCAGCCGAT 59.317 47.619 0.00 0.00 0.00 4.18
2543 2884 5.295152 TGATCCAATCGATTCATCACTCAG 58.705 41.667 19.03 3.18 0.00 3.35
2544 2885 5.280654 TGATCCAATCGATTCATCACTCA 57.719 39.130 19.03 10.12 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.