Multiple sequence alignment - TraesCS7A01G134400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G134400 chr7A 100.000 4025 0 0 1 4025 86047199 86051223 0.000000e+00 7433
1 TraesCS7A01G134400 chr7A 94.737 418 12 10 350 762 542633544 542633132 3.390000e-180 641
2 TraesCS7A01G134400 chr7A 94.005 417 13 9 348 761 690024286 690023879 4.420000e-174 621
3 TraesCS7A01G134400 chr7A 88.571 210 12 5 3826 4025 86070019 86070226 1.120000e-60 244
4 TraesCS7A01G134400 chr7D 95.471 3069 102 15 778 3831 84985908 84988954 0.000000e+00 4863
5 TraesCS7A01G134400 chr7D 95.939 197 6 1 3826 4022 84989002 84989196 6.490000e-83 318
6 TraesCS7A01G134400 chr7B 94.351 3080 100 23 762 3831 34609835 34612850 0.000000e+00 4656
7 TraesCS7A01G134400 chr7B 88.089 403 27 5 3434 3831 34615685 34616071 3.670000e-125 459
8 TraesCS7A01G134400 chr7B 88.161 397 29 2 3433 3827 34619997 34620377 1.320000e-124 457
9 TraesCS7A01G134400 chr7B 95.522 201 7 2 3826 4025 34612898 34613097 1.800000e-83 320
10 TraesCS7A01G134400 chr7B 86.926 283 32 4 43 322 697805780 697805500 3.020000e-81 313
11 TraesCS7A01G134400 chr7B 95.812 191 8 0 3826 4016 34620430 34620620 3.910000e-80 309
12 TraesCS7A01G134400 chr7B 90.588 170 4 5 3859 4025 34616560 34616720 8.760000e-52 215
13 TraesCS7A01G134400 chr7B 87.671 146 15 3 3826 3969 34646019 34646163 2.490000e-37 167
14 TraesCS7A01G134400 chr2B 77.663 2131 378 65 991 3061 418948054 418950146 0.000000e+00 1208
15 TraesCS7A01G134400 chr2B 89.412 255 25 2 43 295 745695028 745694774 1.800000e-83 320
16 TraesCS7A01G134400 chr2B 88.550 262 28 2 36 295 763068563 763068302 2.330000e-82 316
17 TraesCS7A01G134400 chr2D 77.565 2144 378 62 990 3068 352704137 352706242 0.000000e+00 1199
18 TraesCS7A01G134400 chr2D 81.955 399 37 19 417 798 599105766 599106146 5.050000e-79 305
19 TraesCS7A01G134400 chr2A 77.522 2131 385 60 991 3068 470639086 470641175 0.000000e+00 1195
20 TraesCS7A01G134400 chr4A 95.642 413 14 4 349 761 604095142 604095550 0.000000e+00 660
21 TraesCS7A01G134400 chr5A 94.787 422 15 7 345 763 39926955 39927372 0.000000e+00 651
22 TraesCS7A01G134400 chr3B 94.737 418 12 6 346 762 437515574 437515982 3.390000e-180 641
23 TraesCS7A01G134400 chr3B 83.439 157 20 5 1046 1200 710581448 710581600 1.510000e-29 141
24 TraesCS7A01G134400 chr6A 93.839 422 19 6 349 767 454658858 454658441 2.640000e-176 628
25 TraesCS7A01G134400 chr6A 93.990 416 15 6 348 761 13895448 13895041 4.420000e-174 621
26 TraesCS7A01G134400 chr6A 89.844 256 24 2 42 295 32227880 32228135 1.080000e-85 327
27 TraesCS7A01G134400 chr3A 94.203 414 19 4 349 762 147384111 147383703 9.500000e-176 627
28 TraesCS7A01G134400 chr3A 88.476 269 27 4 43 308 589604464 589604197 5.020000e-84 322
29 TraesCS7A01G134400 chr3A 83.636 165 21 5 1046 1208 672545026 672545186 2.510000e-32 150
30 TraesCS7A01G134400 chr5D 93.720 414 22 3 349 761 478730022 478730432 5.720000e-173 617
31 TraesCS7A01G134400 chr5D 89.655 261 25 2 37 295 446037982 446038242 8.340000e-87 331
32 TraesCS7A01G134400 chr1A 88.931 262 27 2 36 295 576791507 576791246 5.020000e-84 322
33 TraesCS7A01G134400 chr1A 88.015 267 29 3 32 296 548573176 548573441 3.020000e-81 313
34 TraesCS7A01G134400 chr6B 87.970 266 30 2 36 299 680182606 680182341 3.020000e-81 313
35 TraesCS7A01G134400 chr3D 83.636 165 21 5 1046 1208 537139268 537139428 2.510000e-32 150


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G134400 chr7A 86047199 86051223 4024 False 7433.000000 7433 100.000000 1 4025 1 chr7A.!!$F1 4024
1 TraesCS7A01G134400 chr7D 84985908 84989196 3288 False 2590.500000 4863 95.705000 778 4022 2 chr7D.!!$F1 3244
2 TraesCS7A01G134400 chr7B 34609835 34620620 10785 False 1069.333333 4656 92.087167 762 4025 6 chr7B.!!$F2 3263
3 TraesCS7A01G134400 chr2B 418948054 418950146 2092 False 1208.000000 1208 77.663000 991 3061 1 chr2B.!!$F1 2070
4 TraesCS7A01G134400 chr2D 352704137 352706242 2105 False 1199.000000 1199 77.565000 990 3068 1 chr2D.!!$F1 2078
5 TraesCS7A01G134400 chr2A 470639086 470641175 2089 False 1195.000000 1195 77.522000 991 3068 1 chr2A.!!$F1 2077

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
243 244 0.035458 CGGCTCAGTCTTTTGGAGGT 59.965 55.0 0.00 0.0 0.00 3.85 F
749 750 0.036732 ATTTGAGCTCGGGTGCAGAA 59.963 50.0 9.64 0.0 34.99 3.02 F
750 751 0.179032 TTTGAGCTCGGGTGCAGAAA 60.179 50.0 9.64 0.0 34.99 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1530 1582 1.355916 GTCGTCGAAGGATCCGAGG 59.644 63.158 5.98 6.18 41.52 4.63 R
2571 2647 1.802880 CGCCTTCTTACCCAGTGATCG 60.803 57.143 0.00 0.00 0.00 3.69 R
3185 3261 9.104965 GTACAATATTTCTTAGTGCACACCATA 57.895 33.333 21.04 6.63 28.84 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.604815 CGGCGCAAACTCAATTAAATAAG 57.395 39.130 10.83 0.00 0.00 1.73
23 24 5.328691 CGGCGCAAACTCAATTAAATAAGA 58.671 37.500 10.83 0.00 0.00 2.10
24 25 5.797934 CGGCGCAAACTCAATTAAATAAGAA 59.202 36.000 10.83 0.00 0.00 2.52
25 26 6.472163 CGGCGCAAACTCAATTAAATAAGAAT 59.528 34.615 10.83 0.00 0.00 2.40
26 27 7.305418 CGGCGCAAACTCAATTAAATAAGAATC 60.305 37.037 10.83 0.00 0.00 2.52
27 28 7.487829 GGCGCAAACTCAATTAAATAAGAATCA 59.512 33.333 10.83 0.00 0.00 2.57
28 29 8.526681 GCGCAAACTCAATTAAATAAGAATCAG 58.473 33.333 0.30 0.00 0.00 2.90
29 30 9.773328 CGCAAACTCAATTAAATAAGAATCAGA 57.227 29.630 0.00 0.00 0.00 3.27
39 40 6.917217 AAATAAGAATCAGAAGAAGAGCGG 57.083 37.500 0.00 0.00 0.00 5.52
40 41 5.860941 ATAAGAATCAGAAGAAGAGCGGA 57.139 39.130 0.00 0.00 0.00 5.54
41 42 3.518634 AGAATCAGAAGAAGAGCGGAC 57.481 47.619 0.00 0.00 0.00 4.79
42 43 2.167487 AGAATCAGAAGAAGAGCGGACC 59.833 50.000 0.00 0.00 0.00 4.46
43 44 1.561643 ATCAGAAGAAGAGCGGACCA 58.438 50.000 0.00 0.00 0.00 4.02
44 45 1.338107 TCAGAAGAAGAGCGGACCAA 58.662 50.000 0.00 0.00 0.00 3.67
45 46 1.000955 TCAGAAGAAGAGCGGACCAAC 59.999 52.381 0.00 0.00 0.00 3.77
46 47 1.001406 CAGAAGAAGAGCGGACCAACT 59.999 52.381 0.00 0.00 0.00 3.16
47 48 1.694696 AGAAGAAGAGCGGACCAACTT 59.305 47.619 0.00 0.00 0.00 2.66
48 49 1.801178 GAAGAAGAGCGGACCAACTTG 59.199 52.381 0.00 0.00 0.00 3.16
49 50 0.759346 AGAAGAGCGGACCAACTTGT 59.241 50.000 0.00 0.00 0.00 3.16
50 51 0.868406 GAAGAGCGGACCAACTTGTG 59.132 55.000 0.00 0.00 0.00 3.33
64 65 4.497291 AACTTGTGGTTGAGTGGTTAGA 57.503 40.909 0.00 0.00 36.70 2.10
65 66 4.073293 ACTTGTGGTTGAGTGGTTAGAG 57.927 45.455 0.00 0.00 0.00 2.43
66 67 3.181454 ACTTGTGGTTGAGTGGTTAGAGG 60.181 47.826 0.00 0.00 0.00 3.69
67 68 1.697432 TGTGGTTGAGTGGTTAGAGGG 59.303 52.381 0.00 0.00 0.00 4.30
68 69 1.975680 GTGGTTGAGTGGTTAGAGGGA 59.024 52.381 0.00 0.00 0.00 4.20
69 70 1.975680 TGGTTGAGTGGTTAGAGGGAC 59.024 52.381 0.00 0.00 0.00 4.46
71 72 2.028020 GGTTGAGTGGTTAGAGGGACTG 60.028 54.545 0.00 0.00 41.55 3.51
72 73 2.633481 GTTGAGTGGTTAGAGGGACTGT 59.367 50.000 0.00 0.00 41.55 3.55
73 74 2.248248 TGAGTGGTTAGAGGGACTGTG 58.752 52.381 0.00 0.00 41.55 3.66
74 75 1.550976 GAGTGGTTAGAGGGACTGTGG 59.449 57.143 0.00 0.00 41.55 4.17
75 76 1.132817 AGTGGTTAGAGGGACTGTGGT 60.133 52.381 0.00 0.00 41.55 4.16
76 77 2.111255 AGTGGTTAGAGGGACTGTGGTA 59.889 50.000 0.00 0.00 41.55 3.25
77 78 3.105283 GTGGTTAGAGGGACTGTGGTAT 58.895 50.000 0.00 0.00 41.55 2.73
78 79 3.132467 GTGGTTAGAGGGACTGTGGTATC 59.868 52.174 0.00 0.00 41.55 2.24
79 80 2.699321 GGTTAGAGGGACTGTGGTATCC 59.301 54.545 0.00 0.00 41.55 2.59
90 91 3.444955 TGGTATCCCCAACCCATCA 57.555 52.632 0.00 0.00 41.50 3.07
91 92 1.221635 TGGTATCCCCAACCCATCAG 58.778 55.000 0.00 0.00 41.50 2.90
92 93 0.478507 GGTATCCCCAACCCATCAGG 59.521 60.000 0.00 0.00 43.78 3.86
111 112 4.463050 AGGGTTTAAATCCTGGTGTTCA 57.537 40.909 19.53 0.00 38.36 3.18
112 113 4.149598 AGGGTTTAAATCCTGGTGTTCAC 58.850 43.478 19.53 0.00 38.36 3.18
113 114 3.892588 GGGTTTAAATCCTGGTGTTCACA 59.107 43.478 10.45 0.00 0.00 3.58
114 115 4.526650 GGGTTTAAATCCTGGTGTTCACAT 59.473 41.667 10.45 0.00 0.00 3.21
115 116 5.011635 GGGTTTAAATCCTGGTGTTCACATT 59.988 40.000 10.45 0.00 0.00 2.71
116 117 6.209788 GGGTTTAAATCCTGGTGTTCACATTA 59.790 38.462 10.45 0.00 0.00 1.90
117 118 7.256012 GGGTTTAAATCCTGGTGTTCACATTAA 60.256 37.037 10.45 0.00 0.00 1.40
118 119 8.311109 GGTTTAAATCCTGGTGTTCACATTAAT 58.689 33.333 5.32 0.00 0.00 1.40
119 120 9.705290 GTTTAAATCCTGGTGTTCACATTAATT 57.295 29.630 5.32 0.00 0.00 1.40
120 121 9.921637 TTTAAATCCTGGTGTTCACATTAATTC 57.078 29.630 5.32 0.00 0.00 2.17
121 122 7.781324 AAATCCTGGTGTTCACATTAATTCT 57.219 32.000 5.32 0.00 0.00 2.40
122 123 6.764308 ATCCTGGTGTTCACATTAATTCTG 57.236 37.500 5.32 0.00 0.00 3.02
123 124 5.875224 TCCTGGTGTTCACATTAATTCTGA 58.125 37.500 5.32 0.00 0.00 3.27
124 125 6.303054 TCCTGGTGTTCACATTAATTCTGAA 58.697 36.000 5.32 0.00 0.00 3.02
125 126 6.947733 TCCTGGTGTTCACATTAATTCTGAAT 59.052 34.615 8.07 0.00 0.00 2.57
126 127 7.451255 TCCTGGTGTTCACATTAATTCTGAATT 59.549 33.333 18.64 18.64 34.90 2.17
127 128 8.090214 CCTGGTGTTCACATTAATTCTGAATTT 58.910 33.333 19.68 1.43 32.38 1.82
145 146 6.847400 TGAATTTATTTCAGATTTTCGGCGA 58.153 32.000 4.99 4.99 39.44 5.54
146 147 7.479980 TGAATTTATTTCAGATTTTCGGCGAT 58.520 30.769 11.76 0.00 39.44 4.58
147 148 7.431960 TGAATTTATTTCAGATTTTCGGCGATG 59.568 33.333 11.76 5.65 39.44 3.84
148 149 2.542766 TTTCAGATTTTCGGCGATGC 57.457 45.000 11.76 0.11 0.00 3.91
149 150 0.373370 TTCAGATTTTCGGCGATGCG 59.627 50.000 11.76 0.00 0.00 4.73
161 162 3.973923 CGATGCGCATTCAGTGAAA 57.026 47.368 26.12 0.00 0.00 2.69
162 163 1.806511 CGATGCGCATTCAGTGAAAG 58.193 50.000 26.12 6.70 0.00 2.62
163 164 1.530441 CGATGCGCATTCAGTGAAAGG 60.530 52.381 26.12 6.60 0.00 3.11
164 165 1.739466 GATGCGCATTCAGTGAAAGGA 59.261 47.619 26.12 6.36 0.00 3.36
165 166 1.159285 TGCGCATTCAGTGAAAGGAG 58.841 50.000 5.66 8.30 0.00 3.69
166 167 1.270785 TGCGCATTCAGTGAAAGGAGA 60.271 47.619 5.66 0.00 0.00 3.71
167 168 1.129437 GCGCATTCAGTGAAAGGAGAC 59.871 52.381 10.14 1.10 0.00 3.36
168 169 1.391485 CGCATTCAGTGAAAGGAGACG 59.609 52.381 10.14 0.74 0.00 4.18
169 170 2.417719 GCATTCAGTGAAAGGAGACGT 58.582 47.619 10.14 0.00 0.00 4.34
170 171 2.808543 GCATTCAGTGAAAGGAGACGTT 59.191 45.455 10.14 0.00 33.60 3.99
172 173 2.814280 TCAGTGAAAGGAGACGTTCC 57.186 50.000 8.26 8.26 46.58 3.62
179 180 4.863984 GGAGACGTTCCTGTCGAC 57.136 61.111 9.11 9.11 43.70 4.20
180 181 1.154263 GGAGACGTTCCTGTCGACG 60.154 63.158 11.62 5.76 43.70 5.12
181 182 1.572085 GGAGACGTTCCTGTCGACGA 61.572 60.000 11.62 0.00 43.70 4.20
182 183 0.452452 GAGACGTTCCTGTCGACGAC 60.452 60.000 20.97 20.97 43.70 4.34
183 184 1.791283 GACGTTCCTGTCGACGACG 60.791 63.158 22.06 22.91 41.53 5.12
184 185 2.162921 GACGTTCCTGTCGACGACGA 62.163 60.000 27.94 11.96 46.56 4.20
198 199 2.359107 ACGAGGCGTCTACGGTGA 60.359 61.111 12.25 0.00 33.69 4.02
199 200 2.099831 CGAGGCGTCTACGGTGAC 59.900 66.667 4.69 0.00 40.23 3.67
200 201 2.396955 CGAGGCGTCTACGGTGACT 61.397 63.158 4.69 0.00 40.23 3.41
201 202 1.881602 GAGGCGTCTACGGTGACTT 59.118 57.895 4.49 0.00 40.23 3.01
202 203 0.243095 GAGGCGTCTACGGTGACTTT 59.757 55.000 4.49 0.00 40.23 2.66
203 204 0.038526 AGGCGTCTACGGTGACTTTG 60.039 55.000 4.49 0.00 40.23 2.77
204 205 0.319297 GGCGTCTACGGTGACTTTGT 60.319 55.000 4.49 0.00 40.23 2.83
205 206 1.068333 GGCGTCTACGGTGACTTTGTA 60.068 52.381 4.49 0.00 40.23 2.41
206 207 2.607771 GGCGTCTACGGTGACTTTGTAA 60.608 50.000 4.49 0.00 40.23 2.41
207 208 3.052036 GCGTCTACGGTGACTTTGTAAA 58.948 45.455 4.49 0.00 40.23 2.01
208 209 3.676646 GCGTCTACGGTGACTTTGTAAAT 59.323 43.478 4.49 0.00 40.23 1.40
209 210 4.201561 GCGTCTACGGTGACTTTGTAAATC 60.202 45.833 4.49 0.00 40.23 2.17
210 211 5.159209 CGTCTACGGTGACTTTGTAAATCT 58.841 41.667 8.11 0.00 35.00 2.40
211 212 5.632347 CGTCTACGGTGACTTTGTAAATCTT 59.368 40.000 8.11 0.00 35.00 2.40
212 213 6.803320 CGTCTACGGTGACTTTGTAAATCTTA 59.197 38.462 8.11 0.00 35.00 2.10
213 214 7.326789 CGTCTACGGTGACTTTGTAAATCTTAA 59.673 37.037 8.11 0.00 35.00 1.85
214 215 8.645487 GTCTACGGTGACTTTGTAAATCTTAAG 58.355 37.037 0.00 0.00 34.39 1.85
215 216 8.579006 TCTACGGTGACTTTGTAAATCTTAAGA 58.421 33.333 7.82 7.82 0.00 2.10
216 217 9.367444 CTACGGTGACTTTGTAAATCTTAAGAT 57.633 33.333 12.37 12.37 36.07 2.40
217 218 8.029642 ACGGTGACTTTGTAAATCTTAAGATG 57.970 34.615 18.61 6.92 34.49 2.90
218 219 7.876068 ACGGTGACTTTGTAAATCTTAAGATGA 59.124 33.333 18.61 7.42 34.49 2.92
219 220 8.883731 CGGTGACTTTGTAAATCTTAAGATGAT 58.116 33.333 18.61 12.88 34.49 2.45
227 228 8.534333 TGTAAATCTTAAGATGATATGTCGGC 57.466 34.615 18.61 3.97 34.49 5.54
228 229 8.367911 TGTAAATCTTAAGATGATATGTCGGCT 58.632 33.333 18.61 0.00 34.49 5.52
229 230 7.897575 AAATCTTAAGATGATATGTCGGCTC 57.102 36.000 18.61 0.00 34.49 4.70
230 231 6.596309 ATCTTAAGATGATATGTCGGCTCA 57.404 37.500 17.26 0.00 32.68 4.26
231 232 6.018589 TCTTAAGATGATATGTCGGCTCAG 57.981 41.667 0.00 0.00 0.00 3.35
232 233 5.536538 TCTTAAGATGATATGTCGGCTCAGT 59.463 40.000 0.00 0.00 0.00 3.41
233 234 3.932545 AGATGATATGTCGGCTCAGTC 57.067 47.619 0.00 0.00 0.00 3.51
234 235 3.495331 AGATGATATGTCGGCTCAGTCT 58.505 45.455 0.00 0.00 0.00 3.24
235 236 3.894427 AGATGATATGTCGGCTCAGTCTT 59.106 43.478 0.00 0.00 0.00 3.01
236 237 4.343526 AGATGATATGTCGGCTCAGTCTTT 59.656 41.667 0.00 0.00 0.00 2.52
237 238 4.471904 TGATATGTCGGCTCAGTCTTTT 57.528 40.909 0.00 0.00 0.00 2.27
238 239 4.183865 TGATATGTCGGCTCAGTCTTTTG 58.816 43.478 0.00 0.00 0.00 2.44
239 240 1.813513 ATGTCGGCTCAGTCTTTTGG 58.186 50.000 0.00 0.00 0.00 3.28
240 241 0.756294 TGTCGGCTCAGTCTTTTGGA 59.244 50.000 0.00 0.00 0.00 3.53
241 242 1.270305 TGTCGGCTCAGTCTTTTGGAG 60.270 52.381 0.00 0.00 0.00 3.86
242 243 0.321671 TCGGCTCAGTCTTTTGGAGG 59.678 55.000 0.00 0.00 0.00 4.30
243 244 0.035458 CGGCTCAGTCTTTTGGAGGT 59.965 55.000 0.00 0.00 0.00 3.85
244 245 1.528129 GGCTCAGTCTTTTGGAGGTG 58.472 55.000 0.00 0.00 0.00 4.00
245 246 0.877743 GCTCAGTCTTTTGGAGGTGC 59.122 55.000 0.00 0.00 0.00 5.01
246 247 1.544314 GCTCAGTCTTTTGGAGGTGCT 60.544 52.381 0.00 0.00 0.00 4.40
247 248 2.421619 CTCAGTCTTTTGGAGGTGCTC 58.578 52.381 0.00 0.00 0.00 4.26
248 249 1.768275 TCAGTCTTTTGGAGGTGCTCA 59.232 47.619 0.00 0.00 31.08 4.26
249 250 2.373169 TCAGTCTTTTGGAGGTGCTCAT 59.627 45.455 0.00 0.00 31.08 2.90
250 251 3.582647 TCAGTCTTTTGGAGGTGCTCATA 59.417 43.478 0.00 0.00 31.08 2.15
251 252 3.937706 CAGTCTTTTGGAGGTGCTCATAG 59.062 47.826 0.00 0.00 31.08 2.23
252 253 3.840666 AGTCTTTTGGAGGTGCTCATAGA 59.159 43.478 0.00 0.00 31.08 1.98
253 254 4.081198 AGTCTTTTGGAGGTGCTCATAGAG 60.081 45.833 0.00 0.00 31.08 2.43
254 255 4.081420 GTCTTTTGGAGGTGCTCATAGAGA 60.081 45.833 0.00 0.00 31.08 3.10
255 256 4.718774 TCTTTTGGAGGTGCTCATAGAGAT 59.281 41.667 0.00 0.00 31.08 2.75
256 257 5.899547 TCTTTTGGAGGTGCTCATAGAGATA 59.100 40.000 0.00 0.00 31.08 1.98
257 258 5.798125 TTTGGAGGTGCTCATAGAGATAG 57.202 43.478 0.00 0.00 31.08 2.08
258 259 4.731313 TGGAGGTGCTCATAGAGATAGA 57.269 45.455 0.00 0.00 31.08 1.98
259 260 4.661222 TGGAGGTGCTCATAGAGATAGAG 58.339 47.826 0.00 0.00 31.08 2.43
260 261 4.105537 TGGAGGTGCTCATAGAGATAGAGT 59.894 45.833 0.00 0.00 31.08 3.24
261 262 4.458989 GGAGGTGCTCATAGAGATAGAGTG 59.541 50.000 0.00 0.00 31.08 3.51
262 263 5.060427 AGGTGCTCATAGAGATAGAGTGT 57.940 43.478 0.00 0.00 0.00 3.55
263 264 4.826733 AGGTGCTCATAGAGATAGAGTGTG 59.173 45.833 0.00 0.00 0.00 3.82
264 265 4.545610 GTGCTCATAGAGATAGAGTGTGC 58.454 47.826 0.00 0.00 0.00 4.57
265 266 3.251972 TGCTCATAGAGATAGAGTGTGCG 59.748 47.826 0.00 0.00 33.43 5.34
266 267 3.252215 GCTCATAGAGATAGAGTGTGCGT 59.748 47.826 0.00 0.00 0.00 5.24
267 268 4.782156 CTCATAGAGATAGAGTGTGCGTG 58.218 47.826 0.00 0.00 0.00 5.34
268 269 4.200092 TCATAGAGATAGAGTGTGCGTGT 58.800 43.478 0.00 0.00 0.00 4.49
269 270 2.929531 AGAGATAGAGTGTGCGTGTG 57.070 50.000 0.00 0.00 0.00 3.82
270 271 2.163509 AGAGATAGAGTGTGCGTGTGT 58.836 47.619 0.00 0.00 0.00 3.72
271 272 2.095008 AGAGATAGAGTGTGCGTGTGTG 60.095 50.000 0.00 0.00 0.00 3.82
272 273 0.716108 GATAGAGTGTGCGTGTGTGC 59.284 55.000 0.00 0.00 0.00 4.57
273 274 1.008875 ATAGAGTGTGCGTGTGTGCG 61.009 55.000 0.00 0.00 37.81 5.34
274 275 2.344521 TAGAGTGTGCGTGTGTGCGT 62.345 55.000 0.00 0.00 37.81 5.24
275 276 2.808958 GAGTGTGCGTGTGTGCGTT 61.809 57.895 0.00 0.00 37.81 4.84
276 277 2.099446 GTGTGCGTGTGTGCGTTT 59.901 55.556 0.00 0.00 37.81 3.60
277 278 1.084935 AGTGTGCGTGTGTGCGTTTA 61.085 50.000 0.00 0.00 37.81 2.01
278 279 0.041663 GTGTGCGTGTGTGCGTTTAT 60.042 50.000 0.00 0.00 37.81 1.40
279 280 1.192757 GTGTGCGTGTGTGCGTTTATA 59.807 47.619 0.00 0.00 37.81 0.98
280 281 1.457683 TGTGCGTGTGTGCGTTTATAG 59.542 47.619 0.00 0.00 37.81 1.31
281 282 1.072391 TGCGTGTGTGCGTTTATAGG 58.928 50.000 0.00 0.00 37.81 2.57
282 283 0.372334 GCGTGTGTGCGTTTATAGGG 59.628 55.000 0.00 0.00 0.00 3.53
283 284 1.999048 CGTGTGTGCGTTTATAGGGA 58.001 50.000 0.00 0.00 0.00 4.20
284 285 2.546778 CGTGTGTGCGTTTATAGGGAT 58.453 47.619 0.00 0.00 0.00 3.85
285 286 2.284150 CGTGTGTGCGTTTATAGGGATG 59.716 50.000 0.00 0.00 0.00 3.51
286 287 3.527533 GTGTGTGCGTTTATAGGGATGA 58.472 45.455 0.00 0.00 0.00 2.92
287 288 3.555956 GTGTGTGCGTTTATAGGGATGAG 59.444 47.826 0.00 0.00 0.00 2.90
288 289 3.196901 TGTGTGCGTTTATAGGGATGAGT 59.803 43.478 0.00 0.00 0.00 3.41
289 290 3.555956 GTGTGCGTTTATAGGGATGAGTG 59.444 47.826 0.00 0.00 0.00 3.51
290 291 3.196901 TGTGCGTTTATAGGGATGAGTGT 59.803 43.478 0.00 0.00 0.00 3.55
291 292 4.403113 TGTGCGTTTATAGGGATGAGTGTA 59.597 41.667 0.00 0.00 0.00 2.90
292 293 5.069914 TGTGCGTTTATAGGGATGAGTGTAT 59.930 40.000 0.00 0.00 0.00 2.29
293 294 5.405571 GTGCGTTTATAGGGATGAGTGTATG 59.594 44.000 0.00 0.00 0.00 2.39
294 295 4.389077 GCGTTTATAGGGATGAGTGTATGC 59.611 45.833 0.00 0.00 0.00 3.14
295 296 5.538118 CGTTTATAGGGATGAGTGTATGCA 58.462 41.667 0.00 0.00 0.00 3.96
296 297 6.166279 CGTTTATAGGGATGAGTGTATGCAT 58.834 40.000 3.79 3.79 0.00 3.96
297 298 6.091305 CGTTTATAGGGATGAGTGTATGCATG 59.909 42.308 10.16 0.00 0.00 4.06
298 299 6.686484 TTATAGGGATGAGTGTATGCATGT 57.314 37.500 10.16 0.00 0.00 3.21
299 300 3.482156 AGGGATGAGTGTATGCATGTC 57.518 47.619 10.16 3.02 0.00 3.06
300 301 3.044156 AGGGATGAGTGTATGCATGTCT 58.956 45.455 10.16 4.63 0.00 3.41
301 302 3.136763 GGGATGAGTGTATGCATGTCTG 58.863 50.000 10.16 0.00 0.00 3.51
302 303 3.432749 GGGATGAGTGTATGCATGTCTGT 60.433 47.826 10.16 0.00 0.00 3.41
303 304 4.202253 GGGATGAGTGTATGCATGTCTGTA 60.202 45.833 10.16 0.00 0.00 2.74
304 305 4.747108 GGATGAGTGTATGCATGTCTGTAC 59.253 45.833 10.16 0.00 0.00 2.90
305 306 5.452496 GGATGAGTGTATGCATGTCTGTACT 60.452 44.000 10.16 4.40 0.00 2.73
306 307 4.747810 TGAGTGTATGCATGTCTGTACTG 58.252 43.478 10.16 0.00 0.00 2.74
307 308 4.462483 TGAGTGTATGCATGTCTGTACTGA 59.538 41.667 10.16 0.00 0.00 3.41
308 309 5.127682 TGAGTGTATGCATGTCTGTACTGAT 59.872 40.000 10.16 0.00 0.00 2.90
309 310 5.354767 AGTGTATGCATGTCTGTACTGATG 58.645 41.667 10.16 2.70 0.00 3.07
310 311 5.105187 AGTGTATGCATGTCTGTACTGATGT 60.105 40.000 10.16 0.00 0.00 3.06
311 312 5.582269 GTGTATGCATGTCTGTACTGATGTT 59.418 40.000 10.16 0.00 0.00 2.71
312 313 6.756542 GTGTATGCATGTCTGTACTGATGTTA 59.243 38.462 10.16 0.00 0.00 2.41
313 314 6.980397 TGTATGCATGTCTGTACTGATGTTAG 59.020 38.462 10.16 0.00 0.00 2.34
314 315 5.659440 TGCATGTCTGTACTGATGTTAGA 57.341 39.130 5.69 0.00 0.00 2.10
315 316 6.036577 TGCATGTCTGTACTGATGTTAGAA 57.963 37.500 5.69 0.00 0.00 2.10
316 317 6.463360 TGCATGTCTGTACTGATGTTAGAAA 58.537 36.000 5.69 0.00 0.00 2.52
317 318 6.934083 TGCATGTCTGTACTGATGTTAGAAAA 59.066 34.615 5.69 0.00 0.00 2.29
318 319 7.443879 TGCATGTCTGTACTGATGTTAGAAAAA 59.556 33.333 5.69 0.00 0.00 1.94
319 320 8.454106 GCATGTCTGTACTGATGTTAGAAAAAT 58.546 33.333 5.69 0.00 0.00 1.82
357 358 4.954092 AAAGAATCAGATCGAAAGTGCC 57.046 40.909 0.00 0.00 0.00 5.01
358 359 3.902881 AGAATCAGATCGAAAGTGCCT 57.097 42.857 0.00 0.00 0.00 4.75
359 360 4.213564 AGAATCAGATCGAAAGTGCCTT 57.786 40.909 0.00 0.00 0.00 4.35
360 361 4.583871 AGAATCAGATCGAAAGTGCCTTT 58.416 39.130 0.00 0.46 36.29 3.11
361 362 4.633565 AGAATCAGATCGAAAGTGCCTTTC 59.366 41.667 14.28 14.28 44.29 2.62
362 363 3.685139 TCAGATCGAAAGTGCCTTTCT 57.315 42.857 19.11 7.31 45.19 2.52
363 364 3.329386 TCAGATCGAAAGTGCCTTTCTG 58.671 45.455 19.11 13.25 45.19 3.02
364 365 2.079925 AGATCGAAAGTGCCTTTCTGC 58.920 47.619 19.11 11.50 45.19 4.26
365 366 2.079925 GATCGAAAGTGCCTTTCTGCT 58.920 47.619 19.11 9.25 45.19 4.24
366 367 1.512926 TCGAAAGTGCCTTTCTGCTC 58.487 50.000 19.11 0.00 45.19 4.26
367 368 0.519077 CGAAAGTGCCTTTCTGCTCC 59.481 55.000 19.11 1.19 45.19 4.70
368 369 0.884514 GAAAGTGCCTTTCTGCTCCC 59.115 55.000 16.08 0.00 44.33 4.30
369 370 0.890996 AAAGTGCCTTTCTGCTCCCG 60.891 55.000 0.00 0.00 0.00 5.14
370 371 1.768684 AAGTGCCTTTCTGCTCCCGA 61.769 55.000 0.00 0.00 0.00 5.14
371 372 1.743252 GTGCCTTTCTGCTCCCGAG 60.743 63.158 0.00 0.00 0.00 4.63
392 393 2.416747 CTCATTTGAGCTCGGTGAACA 58.583 47.619 9.64 0.00 35.13 3.18
393 394 2.414481 CTCATTTGAGCTCGGTGAACAG 59.586 50.000 9.64 0.00 35.13 3.16
394 395 2.146342 CATTTGAGCTCGGTGAACAGT 58.854 47.619 9.64 0.00 0.00 3.55
395 396 3.006430 TCATTTGAGCTCGGTGAACAGTA 59.994 43.478 9.64 0.00 0.00 2.74
396 397 3.462483 TTTGAGCTCGGTGAACAGTAA 57.538 42.857 9.64 0.00 0.00 2.24
397 398 3.462483 TTGAGCTCGGTGAACAGTAAA 57.538 42.857 9.64 0.00 0.00 2.01
398 399 3.462483 TGAGCTCGGTGAACAGTAAAA 57.538 42.857 9.64 0.00 0.00 1.52
399 400 4.002906 TGAGCTCGGTGAACAGTAAAAT 57.997 40.909 9.64 0.00 0.00 1.82
400 401 3.994392 TGAGCTCGGTGAACAGTAAAATC 59.006 43.478 9.64 0.00 0.00 2.17
401 402 2.993899 AGCTCGGTGAACAGTAAAATCG 59.006 45.455 0.00 0.00 0.00 3.34
402 403 2.991190 GCTCGGTGAACAGTAAAATCGA 59.009 45.455 0.00 0.00 0.00 3.59
403 404 3.430895 GCTCGGTGAACAGTAAAATCGAA 59.569 43.478 0.00 0.00 0.00 3.71
404 405 4.084223 GCTCGGTGAACAGTAAAATCGAAA 60.084 41.667 0.00 0.00 0.00 3.46
405 406 5.559417 GCTCGGTGAACAGTAAAATCGAAAA 60.559 40.000 0.00 0.00 0.00 2.29
406 407 6.360844 TCGGTGAACAGTAAAATCGAAAAA 57.639 33.333 0.00 0.00 0.00 1.94
462 463 7.608308 TTTTTGGGAGAAACATTGACAAAAG 57.392 32.000 0.00 0.00 37.55 2.27
463 464 5.930837 TTGGGAGAAACATTGACAAAAGT 57.069 34.783 0.00 0.00 0.00 2.66
464 465 5.930837 TGGGAGAAACATTGACAAAAGTT 57.069 34.783 0.00 0.00 0.00 2.66
465 466 5.901552 TGGGAGAAACATTGACAAAAGTTC 58.098 37.500 9.09 5.33 0.00 3.01
466 467 5.656416 TGGGAGAAACATTGACAAAAGTTCT 59.344 36.000 9.09 9.17 0.00 3.01
467 468 6.831353 TGGGAGAAACATTGACAAAAGTTCTA 59.169 34.615 9.09 0.00 0.00 2.10
468 469 7.340743 TGGGAGAAACATTGACAAAAGTTCTAA 59.659 33.333 9.09 0.00 0.00 2.10
469 470 7.862873 GGGAGAAACATTGACAAAAGTTCTAAG 59.137 37.037 9.09 0.00 0.00 2.18
470 471 8.406297 GGAGAAACATTGACAAAAGTTCTAAGT 58.594 33.333 9.09 0.00 0.00 2.24
471 472 9.226345 GAGAAACATTGACAAAAGTTCTAAGTG 57.774 33.333 9.09 0.00 0.00 3.16
472 473 7.702348 AGAAACATTGACAAAAGTTCTAAGTGC 59.298 33.333 9.09 0.00 0.00 4.40
473 474 6.699575 ACATTGACAAAAGTTCTAAGTGCT 57.300 33.333 0.00 0.00 0.00 4.40
474 475 7.100458 ACATTGACAAAAGTTCTAAGTGCTT 57.900 32.000 0.00 0.00 0.00 3.91
475 476 6.974622 ACATTGACAAAAGTTCTAAGTGCTTG 59.025 34.615 0.00 0.00 0.00 4.01
476 477 4.920376 TGACAAAAGTTCTAAGTGCTTGC 58.080 39.130 0.00 0.00 0.00 4.01
477 478 4.397730 TGACAAAAGTTCTAAGTGCTTGCA 59.602 37.500 0.00 0.00 0.00 4.08
478 479 5.105957 TGACAAAAGTTCTAAGTGCTTGCAA 60.106 36.000 0.00 0.00 0.00 4.08
479 480 5.719173 ACAAAAGTTCTAAGTGCTTGCAAA 58.281 33.333 0.00 0.00 0.00 3.68
480 481 6.162777 ACAAAAGTTCTAAGTGCTTGCAAAA 58.837 32.000 0.00 0.00 0.00 2.44
481 482 6.648725 ACAAAAGTTCTAAGTGCTTGCAAAAA 59.351 30.769 0.00 0.00 0.00 1.94
504 505 9.953565 AAAAATTCATCATGAAATCACATTCCT 57.046 25.926 3.63 0.00 40.12 3.36
505 506 8.942338 AAATTCATCATGAAATCACATTCCTG 57.058 30.769 3.63 0.00 40.12 3.86
506 507 7.655521 ATTCATCATGAAATCACATTCCTGT 57.344 32.000 3.63 0.00 40.12 4.00
507 508 8.756486 ATTCATCATGAAATCACATTCCTGTA 57.244 30.769 3.63 0.00 40.12 2.74
508 509 8.578448 TTCATCATGAAATCACATTCCTGTAA 57.422 30.769 0.00 0.00 32.71 2.41
509 510 8.578448 TCATCATGAAATCACATTCCTGTAAA 57.422 30.769 0.00 0.00 33.14 2.01
510 511 8.680001 TCATCATGAAATCACATTCCTGTAAAG 58.320 33.333 0.00 0.00 33.14 1.85
511 512 6.855836 TCATGAAATCACATTCCTGTAAAGC 58.144 36.000 0.00 0.00 33.14 3.51
512 513 5.295431 TGAAATCACATTCCTGTAAAGCG 57.705 39.130 0.00 0.00 33.14 4.68
513 514 4.759693 TGAAATCACATTCCTGTAAAGCGT 59.240 37.500 0.00 0.00 33.14 5.07
514 515 4.685169 AATCACATTCCTGTAAAGCGTG 57.315 40.909 0.00 0.00 33.14 5.34
515 516 2.422597 TCACATTCCTGTAAAGCGTGG 58.577 47.619 0.00 0.00 33.14 4.94
516 517 1.135689 CACATTCCTGTAAAGCGTGGC 60.136 52.381 0.00 0.00 33.14 5.01
517 518 1.164411 CATTCCTGTAAAGCGTGGCA 58.836 50.000 0.00 0.00 0.00 4.92
518 519 1.539388 CATTCCTGTAAAGCGTGGCAA 59.461 47.619 0.00 0.00 0.00 4.52
519 520 1.681538 TTCCTGTAAAGCGTGGCAAA 58.318 45.000 0.00 0.00 0.00 3.68
520 521 1.681538 TCCTGTAAAGCGTGGCAAAA 58.318 45.000 0.00 0.00 0.00 2.44
521 522 2.025155 TCCTGTAAAGCGTGGCAAAAA 58.975 42.857 0.00 0.00 0.00 1.94
548 549 7.628769 AAAAACAAATTCAGTGCTCCAAAAT 57.371 28.000 0.00 0.00 0.00 1.82
549 550 6.607735 AAACAAATTCAGTGCTCCAAAATG 57.392 33.333 0.00 0.00 0.00 2.32
550 551 4.060205 ACAAATTCAGTGCTCCAAAATGC 58.940 39.130 0.00 0.00 0.00 3.56
551 552 4.202284 ACAAATTCAGTGCTCCAAAATGCT 60.202 37.500 0.00 0.00 0.00 3.79
552 553 4.612264 AATTCAGTGCTCCAAAATGCTT 57.388 36.364 0.00 0.00 0.00 3.91
553 554 4.612264 ATTCAGTGCTCCAAAATGCTTT 57.388 36.364 0.00 0.00 0.00 3.51
554 555 4.405116 TTCAGTGCTCCAAAATGCTTTT 57.595 36.364 0.00 0.00 0.00 2.27
570 571 8.491331 AAATGCTTTTGAAAGTAGCTTTTTCA 57.509 26.923 17.30 17.30 41.40 2.69
571 572 7.704789 ATGCTTTTGAAAGTAGCTTTTTCAG 57.295 32.000 19.21 12.77 43.22 3.02
572 573 6.862209 TGCTTTTGAAAGTAGCTTTTTCAGA 58.138 32.000 19.21 15.01 43.22 3.27
573 574 6.974622 TGCTTTTGAAAGTAGCTTTTTCAGAG 59.025 34.615 19.21 19.75 43.22 3.35
574 575 6.975197 GCTTTTGAAAGTAGCTTTTTCAGAGT 59.025 34.615 19.21 0.00 43.22 3.24
575 576 8.129211 GCTTTTGAAAGTAGCTTTTTCAGAGTA 58.871 33.333 19.21 8.08 43.22 2.59
578 579 9.950680 TTTGAAAGTAGCTTTTTCAGAGTATTG 57.049 29.630 19.21 0.00 43.22 1.90
579 580 8.902540 TGAAAGTAGCTTTTTCAGAGTATTGA 57.097 30.769 17.30 0.00 39.05 2.57
580 581 9.507329 TGAAAGTAGCTTTTTCAGAGTATTGAT 57.493 29.630 17.30 0.00 39.05 2.57
585 586 9.899226 GTAGCTTTTTCAGAGTATTGATTTTGT 57.101 29.630 0.00 0.00 0.00 2.83
587 588 9.822185 AGCTTTTTCAGAGTATTGATTTTGTTT 57.178 25.926 0.00 0.00 0.00 2.83
612 613 6.916360 TTTTTCCATGCCTTCTAGAAATGT 57.084 33.333 6.63 0.00 0.00 2.71
613 614 5.902613 TTTCCATGCCTTCTAGAAATGTG 57.097 39.130 6.63 3.68 0.00 3.21
614 615 4.842531 TCCATGCCTTCTAGAAATGTGA 57.157 40.909 6.63 5.07 0.00 3.58
615 616 5.378230 TCCATGCCTTCTAGAAATGTGAT 57.622 39.130 6.63 0.00 0.00 3.06
616 617 5.759059 TCCATGCCTTCTAGAAATGTGATT 58.241 37.500 6.63 0.00 0.00 2.57
617 618 6.189859 TCCATGCCTTCTAGAAATGTGATTT 58.810 36.000 6.63 0.00 34.64 2.17
618 619 6.319658 TCCATGCCTTCTAGAAATGTGATTTC 59.680 38.462 6.63 0.00 46.90 2.17
629 630 6.651755 GAAATGTGATTTCATGGCGAATTT 57.348 33.333 4.51 0.00 46.05 1.82
630 631 7.064060 GAAATGTGATTTCATGGCGAATTTT 57.936 32.000 4.51 0.00 46.05 1.82
631 632 7.437793 AAATGTGATTTCATGGCGAATTTTT 57.562 28.000 0.00 0.00 32.32 1.94
632 633 5.842619 TGTGATTTCATGGCGAATTTTTG 57.157 34.783 0.00 0.00 32.32 2.44
633 634 5.295950 TGTGATTTCATGGCGAATTTTTGT 58.704 33.333 0.00 0.00 32.32 2.83
634 635 6.450545 TGTGATTTCATGGCGAATTTTTGTA 58.549 32.000 0.00 0.00 32.32 2.41
635 636 6.925718 TGTGATTTCATGGCGAATTTTTGTAA 59.074 30.769 0.00 0.00 32.32 2.41
636 637 7.116090 TGTGATTTCATGGCGAATTTTTGTAAG 59.884 33.333 0.00 0.00 32.32 2.34
637 638 5.837586 TTTCATGGCGAATTTTTGTAAGC 57.162 34.783 0.00 0.00 32.32 3.09
638 639 4.511617 TCATGGCGAATTTTTGTAAGCA 57.488 36.364 0.00 0.00 0.00 3.91
639 640 4.233789 TCATGGCGAATTTTTGTAAGCAC 58.766 39.130 0.00 0.00 0.00 4.40
640 641 4.022416 TCATGGCGAATTTTTGTAAGCACT 60.022 37.500 0.00 0.00 0.00 4.40
641 642 4.314740 TGGCGAATTTTTGTAAGCACTT 57.685 36.364 0.00 0.00 0.00 3.16
642 643 5.440234 TGGCGAATTTTTGTAAGCACTTA 57.560 34.783 0.00 0.00 0.00 2.24
643 644 5.457140 TGGCGAATTTTTGTAAGCACTTAG 58.543 37.500 0.00 0.00 0.00 2.18
644 645 5.239744 TGGCGAATTTTTGTAAGCACTTAGA 59.760 36.000 0.00 0.00 0.00 2.10
645 646 6.146898 GGCGAATTTTTGTAAGCACTTAGAA 58.853 36.000 0.00 0.00 0.00 2.10
646 647 6.087687 GGCGAATTTTTGTAAGCACTTAGAAC 59.912 38.462 0.00 0.00 29.62 3.01
647 648 6.856426 GCGAATTTTTGTAAGCACTTAGAACT 59.144 34.615 0.00 0.00 29.62 3.01
648 649 7.378728 GCGAATTTTTGTAAGCACTTAGAACTT 59.621 33.333 0.00 0.00 29.62 2.66
649 650 9.233232 CGAATTTTTGTAAGCACTTAGAACTTT 57.767 29.630 0.00 0.00 29.62 2.66
652 653 9.869757 ATTTTTGTAAGCACTTAGAACTTTTGT 57.130 25.926 0.00 0.00 29.62 2.83
653 654 8.905103 TTTTGTAAGCACTTAGAACTTTTGTC 57.095 30.769 0.00 0.00 29.62 3.18
654 655 7.618502 TTGTAAGCACTTAGAACTTTTGTCA 57.381 32.000 0.00 0.00 0.00 3.58
655 656 7.618502 TGTAAGCACTTAGAACTTTTGTCAA 57.381 32.000 0.00 0.00 0.00 3.18
656 657 8.220755 TGTAAGCACTTAGAACTTTTGTCAAT 57.779 30.769 0.00 0.00 0.00 2.57
657 658 8.128582 TGTAAGCACTTAGAACTTTTGTCAATG 58.871 33.333 0.00 0.00 0.00 2.82
658 659 6.699575 AGCACTTAGAACTTTTGTCAATGT 57.300 33.333 0.00 0.00 0.00 2.71
659 660 7.100458 AGCACTTAGAACTTTTGTCAATGTT 57.900 32.000 4.72 4.72 33.94 2.71
660 661 7.547227 AGCACTTAGAACTTTTGTCAATGTTT 58.453 30.769 6.10 0.00 31.96 2.83
661 662 7.702348 AGCACTTAGAACTTTTGTCAATGTTTC 59.298 33.333 6.10 1.04 31.96 2.78
662 663 7.702348 GCACTTAGAACTTTTGTCAATGTTTCT 59.298 33.333 6.10 6.96 31.96 2.52
663 664 9.226345 CACTTAGAACTTTTGTCAATGTTTCTC 57.774 33.333 6.42 0.00 31.96 2.87
664 665 9.178758 ACTTAGAACTTTTGTCAATGTTTCTCT 57.821 29.630 6.42 3.36 31.96 3.10
665 666 9.657121 CTTAGAACTTTTGTCAATGTTTCTCTC 57.343 33.333 6.42 0.00 31.96 3.20
666 667 7.630242 AGAACTTTTGTCAATGTTTCTCTCA 57.370 32.000 6.10 0.00 31.96 3.27
667 668 8.055279 AGAACTTTTGTCAATGTTTCTCTCAA 57.945 30.769 6.10 0.00 31.96 3.02
668 669 8.522830 AGAACTTTTGTCAATGTTTCTCTCAAA 58.477 29.630 6.10 0.00 31.96 2.69
669 670 9.139174 GAACTTTTGTCAATGTTTCTCTCAAAA 57.861 29.630 6.10 0.00 31.96 2.44
670 671 9.487790 AACTTTTGTCAATGTTTCTCTCAAAAA 57.512 25.926 0.00 0.00 34.51 1.94
723 724 8.865590 TTTAGTTTTGATTTTACTGTTCAGCC 57.134 30.769 0.00 0.00 0.00 4.85
724 725 5.519722 AGTTTTGATTTTACTGTTCAGCCG 58.480 37.500 0.00 0.00 0.00 5.52
725 726 5.298276 AGTTTTGATTTTACTGTTCAGCCGA 59.702 36.000 0.00 0.00 0.00 5.54
726 727 5.356882 TTTGATTTTACTGTTCAGCCGAG 57.643 39.130 0.00 0.00 0.00 4.63
727 728 2.742053 TGATTTTACTGTTCAGCCGAGC 59.258 45.455 0.00 0.00 0.00 5.03
728 729 2.543777 TTTTACTGTTCAGCCGAGCT 57.456 45.000 0.00 0.00 40.77 4.09
729 730 2.080286 TTTACTGTTCAGCCGAGCTC 57.920 50.000 2.73 2.73 36.40 4.09
730 731 0.966179 TTACTGTTCAGCCGAGCTCA 59.034 50.000 15.40 0.00 36.40 4.26
731 732 1.186200 TACTGTTCAGCCGAGCTCAT 58.814 50.000 15.40 0.00 36.40 2.90
732 733 0.322975 ACTGTTCAGCCGAGCTCATT 59.677 50.000 15.40 0.00 36.40 2.57
733 734 1.271054 ACTGTTCAGCCGAGCTCATTT 60.271 47.619 15.40 0.00 36.40 2.32
734 735 1.129998 CTGTTCAGCCGAGCTCATTTG 59.870 52.381 15.40 8.19 36.40 2.32
735 736 1.270785 TGTTCAGCCGAGCTCATTTGA 60.271 47.619 15.40 10.46 36.40 2.69
736 737 1.396301 GTTCAGCCGAGCTCATTTGAG 59.604 52.381 15.40 3.13 44.75 3.02
745 746 2.093216 CTCATTTGAGCTCGGGTGC 58.907 57.895 9.64 0.00 35.13 5.01
746 747 0.674581 CTCATTTGAGCTCGGGTGCA 60.675 55.000 9.64 0.00 35.13 4.57
747 748 0.674581 TCATTTGAGCTCGGGTGCAG 60.675 55.000 9.64 0.00 34.99 4.41
748 749 0.674581 CATTTGAGCTCGGGTGCAGA 60.675 55.000 9.64 0.00 34.99 4.26
749 750 0.036732 ATTTGAGCTCGGGTGCAGAA 59.963 50.000 9.64 0.00 34.99 3.02
750 751 0.179032 TTTGAGCTCGGGTGCAGAAA 60.179 50.000 9.64 0.00 34.99 2.52
751 752 0.884704 TTGAGCTCGGGTGCAGAAAC 60.885 55.000 9.64 0.00 34.99 2.78
752 753 1.004440 GAGCTCGGGTGCAGAAACT 60.004 57.895 0.00 0.00 34.99 2.66
753 754 1.004440 AGCTCGGGTGCAGAAACTC 60.004 57.895 0.00 0.00 34.99 3.01
754 755 2.035442 GCTCGGGTGCAGAAACTCC 61.035 63.158 0.00 0.00 0.00 3.85
755 756 1.738099 CTCGGGTGCAGAAACTCCG 60.738 63.158 0.00 0.00 41.80 4.63
756 757 3.423154 CGGGTGCAGAAACTCCGC 61.423 66.667 0.00 0.00 34.17 5.54
757 758 3.423154 GGGTGCAGAAACTCCGCG 61.423 66.667 0.00 0.00 0.00 6.46
758 759 2.665185 GGTGCAGAAACTCCGCGT 60.665 61.111 4.92 0.00 0.00 6.01
759 760 2.668280 GGTGCAGAAACTCCGCGTC 61.668 63.158 4.92 0.00 0.00 5.19
760 761 2.357034 TGCAGAAACTCCGCGTCC 60.357 61.111 4.92 0.00 0.00 4.79
778 779 4.283678 CGTCCGAATCAGATGACTTACTC 58.716 47.826 0.00 0.00 0.00 2.59
896 897 4.865365 CGAAGACTTTCTACTCCAATCCAC 59.135 45.833 0.00 0.00 0.00 4.02
913 914 1.755008 ACTAGTCAGAGAGGCCGCC 60.755 63.158 1.49 0.00 0.00 6.13
1204 1250 3.771160 CCGACCTGTTCCCCTCCG 61.771 72.222 0.00 0.00 0.00 4.63
1863 1930 2.486472 AGATGAAGAAGTGGGTGCAG 57.514 50.000 0.00 0.00 0.00 4.41
2102 2169 6.131961 AGGTAATCCCTGAAATGAAGGATTG 58.868 40.000 12.29 0.00 46.19 2.67
2330 2397 1.637553 ACTTGATGGCCTCTTGGATGT 59.362 47.619 3.32 0.00 34.57 3.06
2475 2551 4.706842 TTTGGAGGACAAGTCTAAGCTT 57.293 40.909 3.48 3.48 40.82 3.74
2493 2569 3.137176 AGCTTTATGAAGATGCTGCCCTA 59.863 43.478 0.58 0.00 34.71 3.53
2571 2647 2.356069 CGAGCTTGGGAAGATTTTAGGC 59.644 50.000 0.00 0.00 0.00 3.93
3185 3261 8.085296 CAGAGTCTTCTGTATGTCTACTTTTGT 58.915 37.037 0.00 0.00 44.74 2.83
3253 3329 8.831550 GTGTATGGTCTTCTTTCTGAATATTCC 58.168 37.037 12.90 0.00 33.71 3.01
3276 3352 3.922240 GTGTTAGCTGCAATTGACCATTG 59.078 43.478 10.34 0.00 44.79 2.82
3278 3354 1.636148 AGCTGCAATTGACCATTGGT 58.364 45.000 8.42 8.42 42.51 3.67
3279 3355 2.806434 AGCTGCAATTGACCATTGGTA 58.194 42.857 8.70 0.00 42.51 3.25
3280 3356 2.493278 AGCTGCAATTGACCATTGGTAC 59.507 45.455 8.70 3.45 42.51 3.34
3281 3357 2.493278 GCTGCAATTGACCATTGGTACT 59.507 45.455 8.70 0.00 42.51 2.73
3317 3396 5.939883 TGAAAATCACCTGATCTTGTTCGAT 59.060 36.000 0.00 0.00 32.75 3.59
3325 3404 3.081061 TGATCTTGTTCGATTGGGTTGG 58.919 45.455 0.00 0.00 0.00 3.77
3377 3456 2.020720 CCGTGCAGGCATAACCAATTA 58.979 47.619 0.00 0.00 43.14 1.40
3378 3457 2.223479 CCGTGCAGGCATAACCAATTAC 60.223 50.000 0.00 0.00 43.14 1.89
3388 3476 5.584251 GGCATAACCAATTACAATTGTTGGG 59.416 40.000 24.76 18.80 45.17 4.12
3391 3479 4.615588 ACCAATTACAATTGTTGGGTGG 57.384 40.909 24.76 22.37 45.17 4.61
3530 3618 8.415950 TTTAAGAATGGCTGGTTCATTTAGAA 57.584 30.769 0.00 0.00 35.26 2.10
3538 3626 6.430000 TGGCTGGTTCATTTAGAAAACTACTC 59.570 38.462 0.00 0.00 38.13 2.59
3539 3627 6.127980 GGCTGGTTCATTTAGAAAACTACTCC 60.128 42.308 0.00 0.00 38.13 3.85
3540 3628 6.127980 GCTGGTTCATTTAGAAAACTACTCCC 60.128 42.308 0.00 0.00 38.13 4.30
3541 3629 7.086685 TGGTTCATTTAGAAAACTACTCCCT 57.913 36.000 0.00 0.00 38.13 4.20
3542 3630 7.166167 TGGTTCATTTAGAAAACTACTCCCTC 58.834 38.462 0.00 0.00 38.13 4.30
3543 3631 7.017254 TGGTTCATTTAGAAAACTACTCCCTCT 59.983 37.037 0.00 0.00 38.13 3.69
3544 3632 7.334671 GGTTCATTTAGAAAACTACTCCCTCTG 59.665 40.741 0.00 0.00 38.13 3.35
3545 3633 7.554959 TCATTTAGAAAACTACTCCCTCTGT 57.445 36.000 0.00 0.00 0.00 3.41
3546 3634 8.660295 TCATTTAGAAAACTACTCCCTCTGTA 57.340 34.615 0.00 0.00 0.00 2.74
3547 3635 9.096823 TCATTTAGAAAACTACTCCCTCTGTAA 57.903 33.333 0.00 0.00 0.00 2.41
3548 3636 9.720769 CATTTAGAAAACTACTCCCTCTGTAAA 57.279 33.333 0.00 0.00 0.00 2.01
3549 3637 9.945904 ATTTAGAAAACTACTCCCTCTGTAAAG 57.054 33.333 0.00 0.00 0.00 1.85
3550 3638 6.997942 AGAAAACTACTCCCTCTGTAAAGT 57.002 37.500 0.00 0.00 0.00 2.66
3551 3639 9.592196 TTAGAAAACTACTCCCTCTGTAAAGTA 57.408 33.333 0.00 0.00 0.00 2.24
3552 3640 8.124808 AGAAAACTACTCCCTCTGTAAAGTAG 57.875 38.462 6.81 6.81 44.32 2.57
3553 3641 5.918426 AACTACTCCCTCTGTAAAGTAGC 57.082 43.478 8.01 0.00 43.15 3.58
3579 3667 4.083324 ACATGTGATAAGTGTGAAAAGGCG 60.083 41.667 0.00 0.00 0.00 5.52
3653 6960 8.584157 ACATTGTTAGCAGTAATGAAATGGAAA 58.416 29.630 0.00 0.00 36.09 3.13
3699 7007 0.181114 TGTGCCTATAAGCCTGCAGG 59.819 55.000 29.34 29.34 33.80 4.85
3704 7012 2.873649 GCCTATAAGCCTGCAGGATGAC 60.874 54.545 37.21 18.41 39.69 3.06
3710 7018 1.284198 AGCCTGCAGGATGACTTCAAT 59.716 47.619 37.21 4.90 39.69 2.57
3713 7021 3.618351 CCTGCAGGATGACTTCAATTCT 58.382 45.455 29.88 0.00 39.69 2.40
3752 11371 2.961526 TGACTGGGTTTCGCTAGATC 57.038 50.000 0.00 0.00 0.00 2.75
3766 11387 3.740115 GCTAGATCGCCCATAAGGAAAA 58.260 45.455 0.00 0.00 38.24 2.29
3768 11389 4.214332 GCTAGATCGCCCATAAGGAAAAAG 59.786 45.833 0.00 0.00 38.24 2.27
3779 11400 5.339200 CCATAAGGAAAAAGAGGCAGTAGGA 60.339 44.000 0.00 0.00 36.89 2.94
3787 11408 6.456795 AAAAGAGGCAGTAGGAATTTATGC 57.543 37.500 0.00 0.00 36.16 3.14
3788 11409 3.733337 AGAGGCAGTAGGAATTTATGCG 58.267 45.455 0.00 0.00 37.76 4.73
3791 11412 2.224314 GGCAGTAGGAATTTATGCGCTC 59.776 50.000 9.73 0.00 37.76 5.03
3809 11430 7.228314 TGCGCTCCATTAGTAGAACTATTAT 57.772 36.000 9.73 0.00 29.64 1.28
3894 11569 6.498304 CAAATCTGGAAAATCGGTATTGGAG 58.502 40.000 0.00 0.00 0.00 3.86
3948 11623 1.530655 TGTGCGTCTCTCAGACCCA 60.531 57.895 0.00 0.00 42.12 4.51
3999 11674 7.482169 ACATACTTGATTAGACTTGGACTCA 57.518 36.000 0.00 0.00 0.00 3.41
4022 11697 9.092876 CTCAAACTAGATTAGGAATTCAGACAC 57.907 37.037 7.93 0.00 0.00 3.67
4023 11698 8.041323 TCAAACTAGATTAGGAATTCAGACACC 58.959 37.037 7.93 0.00 0.00 4.16
4024 11699 6.487299 ACTAGATTAGGAATTCAGACACCC 57.513 41.667 7.93 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.328691 TCTTATTTAATTGAGTTTGCGCCG 58.671 37.500 4.18 0.00 0.00 6.46
1 2 7.487829 TGATTCTTATTTAATTGAGTTTGCGCC 59.512 33.333 4.18 0.00 0.00 6.53
2 3 8.393395 TGATTCTTATTTAATTGAGTTTGCGC 57.607 30.769 0.00 0.00 0.00 6.09
3 4 9.773328 TCTGATTCTTATTTAATTGAGTTTGCG 57.227 29.630 0.00 0.00 0.00 4.85
13 14 9.050601 CCGCTCTTCTTCTGATTCTTATTTAAT 57.949 33.333 0.00 0.00 0.00 1.40
14 15 8.258007 TCCGCTCTTCTTCTGATTCTTATTTAA 58.742 33.333 0.00 0.00 0.00 1.52
15 16 7.707035 GTCCGCTCTTCTTCTGATTCTTATTTA 59.293 37.037 0.00 0.00 0.00 1.40
16 17 6.536941 GTCCGCTCTTCTTCTGATTCTTATTT 59.463 38.462 0.00 0.00 0.00 1.40
17 18 6.045955 GTCCGCTCTTCTTCTGATTCTTATT 58.954 40.000 0.00 0.00 0.00 1.40
18 19 5.452636 GGTCCGCTCTTCTTCTGATTCTTAT 60.453 44.000 0.00 0.00 0.00 1.73
19 20 4.142138 GGTCCGCTCTTCTTCTGATTCTTA 60.142 45.833 0.00 0.00 0.00 2.10
20 21 3.368948 GGTCCGCTCTTCTTCTGATTCTT 60.369 47.826 0.00 0.00 0.00 2.52
21 22 2.167487 GGTCCGCTCTTCTTCTGATTCT 59.833 50.000 0.00 0.00 0.00 2.40
22 23 2.093973 TGGTCCGCTCTTCTTCTGATTC 60.094 50.000 0.00 0.00 0.00 2.52
23 24 1.902508 TGGTCCGCTCTTCTTCTGATT 59.097 47.619 0.00 0.00 0.00 2.57
24 25 1.561643 TGGTCCGCTCTTCTTCTGAT 58.438 50.000 0.00 0.00 0.00 2.90
25 26 1.000955 GTTGGTCCGCTCTTCTTCTGA 59.999 52.381 0.00 0.00 0.00 3.27
26 27 1.001406 AGTTGGTCCGCTCTTCTTCTG 59.999 52.381 0.00 0.00 0.00 3.02
27 28 1.343069 AGTTGGTCCGCTCTTCTTCT 58.657 50.000 0.00 0.00 0.00 2.85
28 29 1.801178 CAAGTTGGTCCGCTCTTCTTC 59.199 52.381 0.00 0.00 0.00 2.87
29 30 1.141053 ACAAGTTGGTCCGCTCTTCTT 59.859 47.619 7.96 0.00 0.00 2.52
30 31 0.759346 ACAAGTTGGTCCGCTCTTCT 59.241 50.000 7.96 0.00 0.00 2.85
31 32 0.868406 CACAAGTTGGTCCGCTCTTC 59.132 55.000 7.96 0.00 0.00 2.87
32 33 0.535102 CCACAAGTTGGTCCGCTCTT 60.535 55.000 7.96 0.00 41.10 2.85
33 34 1.071471 CCACAAGTTGGTCCGCTCT 59.929 57.895 7.96 0.00 41.10 4.09
34 35 3.655481 CCACAAGTTGGTCCGCTC 58.345 61.111 7.96 0.00 41.10 5.03
43 44 4.451900 CTCTAACCACTCAACCACAAGTT 58.548 43.478 0.00 0.00 40.16 2.66
44 45 3.181454 CCTCTAACCACTCAACCACAAGT 60.181 47.826 0.00 0.00 0.00 3.16
45 46 3.403038 CCTCTAACCACTCAACCACAAG 58.597 50.000 0.00 0.00 0.00 3.16
46 47 2.105821 CCCTCTAACCACTCAACCACAA 59.894 50.000 0.00 0.00 0.00 3.33
47 48 1.697432 CCCTCTAACCACTCAACCACA 59.303 52.381 0.00 0.00 0.00 4.17
48 49 1.975680 TCCCTCTAACCACTCAACCAC 59.024 52.381 0.00 0.00 0.00 4.16
49 50 1.975680 GTCCCTCTAACCACTCAACCA 59.024 52.381 0.00 0.00 0.00 3.67
50 51 2.028020 CAGTCCCTCTAACCACTCAACC 60.028 54.545 0.00 0.00 0.00 3.77
51 52 2.633481 ACAGTCCCTCTAACCACTCAAC 59.367 50.000 0.00 0.00 0.00 3.18
52 53 2.632996 CACAGTCCCTCTAACCACTCAA 59.367 50.000 0.00 0.00 0.00 3.02
53 54 2.248248 CACAGTCCCTCTAACCACTCA 58.752 52.381 0.00 0.00 0.00 3.41
54 55 1.550976 CCACAGTCCCTCTAACCACTC 59.449 57.143 0.00 0.00 0.00 3.51
55 56 1.132817 ACCACAGTCCCTCTAACCACT 60.133 52.381 0.00 0.00 0.00 4.00
56 57 1.349067 ACCACAGTCCCTCTAACCAC 58.651 55.000 0.00 0.00 0.00 4.16
57 58 3.371965 GATACCACAGTCCCTCTAACCA 58.628 50.000 0.00 0.00 0.00 3.67
58 59 2.699321 GGATACCACAGTCCCTCTAACC 59.301 54.545 0.00 0.00 0.00 2.85
85 86 4.814173 ACACCAGGATTTAAACCCTGATGG 60.814 45.833 27.74 15.81 46.21 3.51
90 91 4.149598 GTGAACACCAGGATTTAAACCCT 58.850 43.478 0.00 0.00 0.00 4.34
91 92 3.892588 TGTGAACACCAGGATTTAAACCC 59.107 43.478 0.00 0.00 0.00 4.11
92 93 5.722021 ATGTGAACACCAGGATTTAAACC 57.278 39.130 0.00 0.00 0.00 3.27
93 94 9.705290 AATTAATGTGAACACCAGGATTTAAAC 57.295 29.630 0.00 0.00 0.00 2.01
94 95 9.921637 GAATTAATGTGAACACCAGGATTTAAA 57.078 29.630 0.00 0.00 0.00 1.52
95 96 9.308000 AGAATTAATGTGAACACCAGGATTTAA 57.692 29.630 0.00 0.00 0.00 1.52
96 97 8.739039 CAGAATTAATGTGAACACCAGGATTTA 58.261 33.333 0.00 0.00 0.00 1.40
97 98 7.451255 TCAGAATTAATGTGAACACCAGGATTT 59.549 33.333 0.00 0.00 0.00 2.17
98 99 6.947733 TCAGAATTAATGTGAACACCAGGATT 59.052 34.615 0.00 0.00 0.00 3.01
99 100 6.484288 TCAGAATTAATGTGAACACCAGGAT 58.516 36.000 0.00 0.00 0.00 3.24
100 101 5.875224 TCAGAATTAATGTGAACACCAGGA 58.125 37.500 0.00 0.00 0.00 3.86
101 102 6.573664 TTCAGAATTAATGTGAACACCAGG 57.426 37.500 8.70 0.00 0.00 4.45
121 122 6.847400 TCGCCGAAAATCTGAAATAAATTCA 58.153 32.000 0.00 0.00 45.71 2.57
122 123 7.565789 GCATCGCCGAAAATCTGAAATAAATTC 60.566 37.037 0.00 0.00 38.60 2.17
123 124 6.198966 GCATCGCCGAAAATCTGAAATAAATT 59.801 34.615 0.00 0.00 0.00 1.82
124 125 5.687285 GCATCGCCGAAAATCTGAAATAAAT 59.313 36.000 0.00 0.00 0.00 1.40
125 126 5.034152 GCATCGCCGAAAATCTGAAATAAA 58.966 37.500 0.00 0.00 0.00 1.40
126 127 4.597079 GCATCGCCGAAAATCTGAAATAA 58.403 39.130 0.00 0.00 0.00 1.40
127 128 3.303066 CGCATCGCCGAAAATCTGAAATA 60.303 43.478 0.00 0.00 0.00 1.40
128 129 2.539547 CGCATCGCCGAAAATCTGAAAT 60.540 45.455 0.00 0.00 0.00 2.17
129 130 1.202020 CGCATCGCCGAAAATCTGAAA 60.202 47.619 0.00 0.00 0.00 2.69
130 131 0.373370 CGCATCGCCGAAAATCTGAA 59.627 50.000 0.00 0.00 0.00 3.02
131 132 2.005995 CGCATCGCCGAAAATCTGA 58.994 52.632 0.00 0.00 0.00 3.27
132 133 4.576843 CGCATCGCCGAAAATCTG 57.423 55.556 0.00 0.00 0.00 2.90
143 144 1.530441 CCTTTCACTGAATGCGCATCG 60.530 52.381 25.53 17.09 0.00 3.84
144 145 1.739466 TCCTTTCACTGAATGCGCATC 59.261 47.619 25.53 17.12 0.00 3.91
145 146 1.741706 CTCCTTTCACTGAATGCGCAT 59.258 47.619 19.28 19.28 0.00 4.73
146 147 1.159285 CTCCTTTCACTGAATGCGCA 58.841 50.000 14.96 14.96 0.00 6.09
147 148 1.129437 GTCTCCTTTCACTGAATGCGC 59.871 52.381 0.00 0.00 0.00 6.09
148 149 1.391485 CGTCTCCTTTCACTGAATGCG 59.609 52.381 0.00 0.00 0.00 4.73
149 150 2.417719 ACGTCTCCTTTCACTGAATGC 58.582 47.619 0.00 0.00 0.00 3.56
150 151 3.433615 GGAACGTCTCCTTTCACTGAATG 59.566 47.826 8.87 0.00 41.61 2.67
151 152 3.665190 GGAACGTCTCCTTTCACTGAAT 58.335 45.455 8.87 0.00 41.61 2.57
152 153 3.107642 GGAACGTCTCCTTTCACTGAA 57.892 47.619 8.87 0.00 41.61 3.02
153 154 2.814280 GGAACGTCTCCTTTCACTGA 57.186 50.000 8.87 0.00 41.61 3.41
162 163 1.154263 CGTCGACAGGAACGTCTCC 60.154 63.158 17.16 8.26 45.81 3.71
163 164 0.452452 GTCGTCGACAGGAACGTCTC 60.452 60.000 20.28 0.00 33.54 3.36
164 165 1.573436 GTCGTCGACAGGAACGTCT 59.427 57.895 20.28 0.00 33.54 4.18
165 166 1.791283 CGTCGTCGACAGGAACGTC 60.791 63.158 24.13 0.00 39.71 4.34
166 167 2.167808 CTCGTCGTCGACAGGAACGT 62.168 60.000 24.13 0.00 41.35 3.99
167 168 1.509370 CTCGTCGTCGACAGGAACG 60.509 63.158 24.13 17.77 41.35 3.95
168 169 1.154263 CCTCGTCGTCGACAGGAAC 60.154 63.158 26.56 6.82 41.35 3.62
169 170 2.974489 GCCTCGTCGTCGACAGGAA 61.974 63.158 31.08 14.07 41.35 3.36
170 171 3.429141 GCCTCGTCGTCGACAGGA 61.429 66.667 31.08 19.58 41.35 3.86
171 172 4.813526 CGCCTCGTCGTCGACAGG 62.814 72.222 26.42 26.42 41.35 4.00
172 173 3.978867 GACGCCTCGTCGTCGACAG 62.979 68.421 24.13 18.50 46.56 3.51
173 174 4.081030 GACGCCTCGTCGTCGACA 62.081 66.667 24.13 10.99 46.56 4.35
181 182 2.359107 TCACCGTAGACGCCTCGT 60.359 61.111 0.00 0.00 45.10 4.18
182 183 1.919956 AAGTCACCGTAGACGCCTCG 61.920 60.000 0.00 0.00 43.24 4.63
183 184 0.243095 AAAGTCACCGTAGACGCCTC 59.757 55.000 0.00 0.00 43.24 4.70
184 185 0.038526 CAAAGTCACCGTAGACGCCT 60.039 55.000 0.00 0.00 43.24 5.52
185 186 0.319297 ACAAAGTCACCGTAGACGCC 60.319 55.000 0.00 0.00 43.24 5.68
186 187 2.336554 TACAAAGTCACCGTAGACGC 57.663 50.000 0.00 0.00 43.24 5.19
187 188 5.159209 AGATTTACAAAGTCACCGTAGACG 58.841 41.667 0.00 0.00 43.24 4.18
188 189 8.524870 TTAAGATTTACAAAGTCACCGTAGAC 57.475 34.615 0.00 0.00 38.81 2.59
189 190 8.579006 TCTTAAGATTTACAAAGTCACCGTAGA 58.421 33.333 0.00 0.00 0.00 2.59
190 191 8.752766 TCTTAAGATTTACAAAGTCACCGTAG 57.247 34.615 0.00 0.00 0.00 3.51
191 192 9.146984 CATCTTAAGATTTACAAAGTCACCGTA 57.853 33.333 15.49 0.00 31.21 4.02
192 193 7.876068 TCATCTTAAGATTTACAAAGTCACCGT 59.124 33.333 15.49 0.00 31.21 4.83
193 194 8.251750 TCATCTTAAGATTTACAAAGTCACCG 57.748 34.615 15.49 0.00 31.21 4.94
201 202 8.988934 GCCGACATATCATCTTAAGATTTACAA 58.011 33.333 15.49 0.84 31.21 2.41
202 203 8.367911 AGCCGACATATCATCTTAAGATTTACA 58.632 33.333 15.49 2.19 31.21 2.41
203 204 8.764524 AGCCGACATATCATCTTAAGATTTAC 57.235 34.615 15.49 3.16 31.21 2.01
204 205 8.585018 TGAGCCGACATATCATCTTAAGATTTA 58.415 33.333 15.49 10.60 31.21 1.40
205 206 7.445121 TGAGCCGACATATCATCTTAAGATTT 58.555 34.615 15.49 8.78 31.21 2.17
206 207 6.997655 TGAGCCGACATATCATCTTAAGATT 58.002 36.000 15.49 5.12 31.21 2.40
207 208 6.210385 ACTGAGCCGACATATCATCTTAAGAT 59.790 38.462 12.37 12.37 34.56 2.40
208 209 5.536538 ACTGAGCCGACATATCATCTTAAGA 59.463 40.000 7.82 7.82 0.00 2.10
209 210 5.777802 ACTGAGCCGACATATCATCTTAAG 58.222 41.667 0.00 0.00 0.00 1.85
210 211 5.536538 AGACTGAGCCGACATATCATCTTAA 59.463 40.000 0.00 0.00 0.00 1.85
211 212 5.073428 AGACTGAGCCGACATATCATCTTA 58.927 41.667 0.00 0.00 0.00 2.10
212 213 3.894427 AGACTGAGCCGACATATCATCTT 59.106 43.478 0.00 0.00 0.00 2.40
213 214 3.495331 AGACTGAGCCGACATATCATCT 58.505 45.455 0.00 0.00 0.00 2.90
214 215 3.932545 AGACTGAGCCGACATATCATC 57.067 47.619 0.00 0.00 0.00 2.92
215 216 4.679373 AAAGACTGAGCCGACATATCAT 57.321 40.909 0.00 0.00 0.00 2.45
216 217 4.183865 CAAAAGACTGAGCCGACATATCA 58.816 43.478 0.00 0.00 0.00 2.15
217 218 3.557595 CCAAAAGACTGAGCCGACATATC 59.442 47.826 0.00 0.00 0.00 1.63
218 219 3.197766 TCCAAAAGACTGAGCCGACATAT 59.802 43.478 0.00 0.00 0.00 1.78
219 220 2.565391 TCCAAAAGACTGAGCCGACATA 59.435 45.455 0.00 0.00 0.00 2.29
220 221 1.347707 TCCAAAAGACTGAGCCGACAT 59.652 47.619 0.00 0.00 0.00 3.06
221 222 0.756294 TCCAAAAGACTGAGCCGACA 59.244 50.000 0.00 0.00 0.00 4.35
222 223 1.433534 CTCCAAAAGACTGAGCCGAC 58.566 55.000 0.00 0.00 0.00 4.79
223 224 0.321671 CCTCCAAAAGACTGAGCCGA 59.678 55.000 0.00 0.00 0.00 5.54
224 225 0.035458 ACCTCCAAAAGACTGAGCCG 59.965 55.000 0.00 0.00 0.00 5.52
225 226 1.528129 CACCTCCAAAAGACTGAGCC 58.472 55.000 0.00 0.00 0.00 4.70
226 227 0.877743 GCACCTCCAAAAGACTGAGC 59.122 55.000 0.00 0.00 0.00 4.26
227 228 2.224378 TGAGCACCTCCAAAAGACTGAG 60.224 50.000 0.00 0.00 0.00 3.35
228 229 1.768275 TGAGCACCTCCAAAAGACTGA 59.232 47.619 0.00 0.00 0.00 3.41
229 230 2.260844 TGAGCACCTCCAAAAGACTG 57.739 50.000 0.00 0.00 0.00 3.51
230 231 3.840666 TCTATGAGCACCTCCAAAAGACT 59.159 43.478 0.00 0.00 0.00 3.24
231 232 4.081420 TCTCTATGAGCACCTCCAAAAGAC 60.081 45.833 0.00 0.00 0.00 3.01
232 233 4.096681 TCTCTATGAGCACCTCCAAAAGA 58.903 43.478 0.00 0.00 0.00 2.52
233 234 4.478206 TCTCTATGAGCACCTCCAAAAG 57.522 45.455 0.00 0.00 0.00 2.27
234 235 5.899547 TCTATCTCTATGAGCACCTCCAAAA 59.100 40.000 0.00 0.00 0.00 2.44
235 236 5.458595 TCTATCTCTATGAGCACCTCCAAA 58.541 41.667 0.00 0.00 0.00 3.28
236 237 5.066913 TCTATCTCTATGAGCACCTCCAA 57.933 43.478 0.00 0.00 0.00 3.53
237 238 4.105537 ACTCTATCTCTATGAGCACCTCCA 59.894 45.833 0.00 0.00 0.00 3.86
238 239 4.458989 CACTCTATCTCTATGAGCACCTCC 59.541 50.000 0.00 0.00 0.00 4.30
239 240 5.048782 CACACTCTATCTCTATGAGCACCTC 60.049 48.000 0.00 0.00 0.00 3.85
240 241 4.826733 CACACTCTATCTCTATGAGCACCT 59.173 45.833 0.00 0.00 0.00 4.00
241 242 4.558496 GCACACTCTATCTCTATGAGCACC 60.558 50.000 0.00 0.00 0.00 5.01
242 243 4.545610 GCACACTCTATCTCTATGAGCAC 58.454 47.826 0.00 0.00 0.00 4.40
243 244 3.251972 CGCACACTCTATCTCTATGAGCA 59.748 47.826 0.00 0.00 0.00 4.26
244 245 3.252215 ACGCACACTCTATCTCTATGAGC 59.748 47.826 0.00 0.00 0.00 4.26
245 246 4.274705 ACACGCACACTCTATCTCTATGAG 59.725 45.833 0.00 0.00 0.00 2.90
246 247 4.035675 CACACGCACACTCTATCTCTATGA 59.964 45.833 0.00 0.00 0.00 2.15
247 248 4.201960 ACACACGCACACTCTATCTCTATG 60.202 45.833 0.00 0.00 0.00 2.23
248 249 3.948473 ACACACGCACACTCTATCTCTAT 59.052 43.478 0.00 0.00 0.00 1.98
249 250 3.127030 CACACACGCACACTCTATCTCTA 59.873 47.826 0.00 0.00 0.00 2.43
250 251 2.095008 CACACACGCACACTCTATCTCT 60.095 50.000 0.00 0.00 0.00 3.10
251 252 2.254459 CACACACGCACACTCTATCTC 58.746 52.381 0.00 0.00 0.00 2.75
252 253 1.670087 GCACACACGCACACTCTATCT 60.670 52.381 0.00 0.00 0.00 1.98
253 254 0.716108 GCACACACGCACACTCTATC 59.284 55.000 0.00 0.00 0.00 2.08
254 255 1.008875 CGCACACACGCACACTCTAT 61.009 55.000 0.00 0.00 0.00 1.98
255 256 1.660264 CGCACACACGCACACTCTA 60.660 57.895 0.00 0.00 0.00 2.43
256 257 2.961721 CGCACACACGCACACTCT 60.962 61.111 0.00 0.00 0.00 3.24
257 258 2.304516 AAACGCACACACGCACACTC 62.305 55.000 0.00 0.00 36.19 3.51
258 259 1.084935 TAAACGCACACACGCACACT 61.085 50.000 0.00 0.00 36.19 3.55
259 260 0.041663 ATAAACGCACACACGCACAC 60.042 50.000 0.00 0.00 36.19 3.82
260 261 1.457683 CTATAAACGCACACACGCACA 59.542 47.619 0.00 0.00 36.19 4.57
261 262 1.201877 CCTATAAACGCACACACGCAC 60.202 52.381 0.00 0.00 36.19 5.34
262 263 1.072391 CCTATAAACGCACACACGCA 58.928 50.000 0.00 0.00 36.19 5.24
263 264 0.372334 CCCTATAAACGCACACACGC 59.628 55.000 0.00 0.00 36.19 5.34
264 265 1.999048 TCCCTATAAACGCACACACG 58.001 50.000 0.00 0.00 39.50 4.49
265 266 3.527533 TCATCCCTATAAACGCACACAC 58.472 45.455 0.00 0.00 0.00 3.82
266 267 3.196901 ACTCATCCCTATAAACGCACACA 59.803 43.478 0.00 0.00 0.00 3.72
267 268 3.555956 CACTCATCCCTATAAACGCACAC 59.444 47.826 0.00 0.00 0.00 3.82
268 269 3.196901 ACACTCATCCCTATAAACGCACA 59.803 43.478 0.00 0.00 0.00 4.57
269 270 3.793559 ACACTCATCCCTATAAACGCAC 58.206 45.455 0.00 0.00 0.00 5.34
270 271 5.538118 CATACACTCATCCCTATAAACGCA 58.462 41.667 0.00 0.00 0.00 5.24
271 272 4.389077 GCATACACTCATCCCTATAAACGC 59.611 45.833 0.00 0.00 0.00 4.84
272 273 5.538118 TGCATACACTCATCCCTATAAACG 58.462 41.667 0.00 0.00 0.00 3.60
273 274 6.936900 ACATGCATACACTCATCCCTATAAAC 59.063 38.462 0.00 0.00 0.00 2.01
274 275 7.016563 AGACATGCATACACTCATCCCTATAAA 59.983 37.037 0.00 0.00 0.00 1.40
275 276 6.498303 AGACATGCATACACTCATCCCTATAA 59.502 38.462 0.00 0.00 0.00 0.98
276 277 6.019108 AGACATGCATACACTCATCCCTATA 58.981 40.000 0.00 0.00 0.00 1.31
277 278 4.842948 AGACATGCATACACTCATCCCTAT 59.157 41.667 0.00 0.00 0.00 2.57
278 279 4.039609 CAGACATGCATACACTCATCCCTA 59.960 45.833 0.00 0.00 0.00 3.53
279 280 3.044156 AGACATGCATACACTCATCCCT 58.956 45.455 0.00 0.00 0.00 4.20
280 281 3.136763 CAGACATGCATACACTCATCCC 58.863 50.000 0.00 0.00 0.00 3.85
281 282 3.801698 ACAGACATGCATACACTCATCC 58.198 45.455 0.00 0.00 0.00 3.51
282 283 5.461407 CAGTACAGACATGCATACACTCATC 59.539 44.000 0.00 0.00 0.00 2.92
283 284 5.127682 TCAGTACAGACATGCATACACTCAT 59.872 40.000 0.00 0.00 0.00 2.90
284 285 4.462483 TCAGTACAGACATGCATACACTCA 59.538 41.667 0.00 0.00 0.00 3.41
285 286 4.998788 TCAGTACAGACATGCATACACTC 58.001 43.478 0.00 0.00 0.00 3.51
286 287 5.105187 ACATCAGTACAGACATGCATACACT 60.105 40.000 0.00 0.00 0.00 3.55
287 288 5.111989 ACATCAGTACAGACATGCATACAC 58.888 41.667 0.00 0.00 0.00 2.90
288 289 5.343307 ACATCAGTACAGACATGCATACA 57.657 39.130 0.00 0.00 0.00 2.29
289 290 7.203218 TCTAACATCAGTACAGACATGCATAC 58.797 38.462 0.00 0.00 0.00 2.39
290 291 7.346751 TCTAACATCAGTACAGACATGCATA 57.653 36.000 0.00 0.00 0.00 3.14
291 292 6.225981 TCTAACATCAGTACAGACATGCAT 57.774 37.500 0.00 0.00 0.00 3.96
292 293 5.659440 TCTAACATCAGTACAGACATGCA 57.341 39.130 0.00 0.00 0.00 3.96
293 294 6.968131 TTTCTAACATCAGTACAGACATGC 57.032 37.500 0.00 0.00 0.00 4.06
334 335 5.474876 AGGCACTTTCGATCTGATTCTTTTT 59.525 36.000 0.00 0.00 27.25 1.94
335 336 5.006386 AGGCACTTTCGATCTGATTCTTTT 58.994 37.500 0.00 0.00 27.25 2.27
336 337 4.583871 AGGCACTTTCGATCTGATTCTTT 58.416 39.130 0.00 0.00 27.25 2.52
337 338 4.213564 AGGCACTTTCGATCTGATTCTT 57.786 40.909 0.00 0.00 27.25 2.52
338 339 3.902881 AGGCACTTTCGATCTGATTCT 57.097 42.857 0.00 0.00 27.25 2.40
353 354 1.743252 CTCGGGAGCAGAAAGGCAC 60.743 63.158 0.00 0.00 35.83 5.01
354 355 2.665000 CTCGGGAGCAGAAAGGCA 59.335 61.111 0.00 0.00 35.83 4.75
372 373 2.414481 CTGTTCACCGAGCTCAAATGAG 59.586 50.000 15.40 6.05 44.75 2.90
373 374 2.224281 ACTGTTCACCGAGCTCAAATGA 60.224 45.455 15.40 10.78 0.00 2.57
374 375 2.146342 ACTGTTCACCGAGCTCAAATG 58.854 47.619 15.40 8.47 0.00 2.32
375 376 2.550830 ACTGTTCACCGAGCTCAAAT 57.449 45.000 15.40 0.00 0.00 2.32
376 377 3.462483 TTACTGTTCACCGAGCTCAAA 57.538 42.857 15.40 0.00 0.00 2.69
377 378 3.462483 TTTACTGTTCACCGAGCTCAA 57.538 42.857 15.40 0.00 0.00 3.02
378 379 3.462483 TTTTACTGTTCACCGAGCTCA 57.538 42.857 15.40 0.00 0.00 4.26
379 380 3.060895 CGATTTTACTGTTCACCGAGCTC 59.939 47.826 2.73 2.73 0.00 4.09
380 381 2.993899 CGATTTTACTGTTCACCGAGCT 59.006 45.455 0.00 0.00 0.00 4.09
381 382 2.991190 TCGATTTTACTGTTCACCGAGC 59.009 45.455 0.00 0.00 0.00 5.03
382 383 5.585500 TTTCGATTTTACTGTTCACCGAG 57.415 39.130 0.00 0.00 0.00 4.63
383 384 5.987777 TTTTCGATTTTACTGTTCACCGA 57.012 34.783 0.00 0.00 0.00 4.69
438 439 7.164803 ACTTTTGTCAATGTTTCTCCCAAAAA 58.835 30.769 0.00 0.00 32.07 1.94
439 440 6.706295 ACTTTTGTCAATGTTTCTCCCAAAA 58.294 32.000 0.00 0.00 0.00 2.44
440 441 6.293004 ACTTTTGTCAATGTTTCTCCCAAA 57.707 33.333 0.00 0.00 0.00 3.28
441 442 5.930837 ACTTTTGTCAATGTTTCTCCCAA 57.069 34.783 0.00 0.00 0.00 4.12
442 443 5.656416 AGAACTTTTGTCAATGTTTCTCCCA 59.344 36.000 6.10 0.00 31.96 4.37
443 444 6.149129 AGAACTTTTGTCAATGTTTCTCCC 57.851 37.500 6.10 0.00 31.96 4.30
444 445 8.406297 ACTTAGAACTTTTGTCAATGTTTCTCC 58.594 33.333 6.42 0.00 31.96 3.71
445 446 9.226345 CACTTAGAACTTTTGTCAATGTTTCTC 57.774 33.333 6.42 0.00 31.96 2.87
446 447 7.702348 GCACTTAGAACTTTTGTCAATGTTTCT 59.298 33.333 6.10 6.96 31.96 2.52
447 448 7.702348 AGCACTTAGAACTTTTGTCAATGTTTC 59.298 33.333 6.10 1.04 31.96 2.78
448 449 7.547227 AGCACTTAGAACTTTTGTCAATGTTT 58.453 30.769 6.10 0.00 31.96 2.83
449 450 7.100458 AGCACTTAGAACTTTTGTCAATGTT 57.900 32.000 4.72 4.72 33.94 2.71
450 451 6.699575 AGCACTTAGAACTTTTGTCAATGT 57.300 33.333 0.00 0.00 0.00 2.71
451 452 6.074676 GCAAGCACTTAGAACTTTTGTCAATG 60.075 38.462 0.00 0.00 0.00 2.82
452 453 5.979517 GCAAGCACTTAGAACTTTTGTCAAT 59.020 36.000 0.00 0.00 0.00 2.57
453 454 5.105957 TGCAAGCACTTAGAACTTTTGTCAA 60.106 36.000 0.00 0.00 0.00 3.18
454 455 4.397730 TGCAAGCACTTAGAACTTTTGTCA 59.602 37.500 0.00 0.00 0.00 3.58
455 456 4.920376 TGCAAGCACTTAGAACTTTTGTC 58.080 39.130 0.00 0.00 0.00 3.18
456 457 4.981806 TGCAAGCACTTAGAACTTTTGT 57.018 36.364 0.00 0.00 0.00 2.83
457 458 6.645700 TTTTGCAAGCACTTAGAACTTTTG 57.354 33.333 0.00 0.00 0.00 2.44
478 479 9.953565 AGGAATGTGATTTCATGATGAATTTTT 57.046 25.926 8.90 0.00 36.11 1.94
479 480 9.378551 CAGGAATGTGATTTCATGATGAATTTT 57.621 29.630 8.90 0.00 39.18 1.82
480 481 8.537016 ACAGGAATGTGATTTCATGATGAATTT 58.463 29.630 8.90 0.00 39.18 1.82
481 482 8.074613 ACAGGAATGTGATTTCATGATGAATT 57.925 30.769 8.90 5.47 39.18 2.17
482 483 7.655521 ACAGGAATGTGATTTCATGATGAAT 57.344 32.000 8.90 0.00 39.18 2.57
483 484 8.578448 TTACAGGAATGTGATTTCATGATGAA 57.422 30.769 3.29 3.29 39.18 2.57
484 485 8.578448 TTTACAGGAATGTGATTTCATGATGA 57.422 30.769 0.00 0.00 39.18 2.92
485 486 7.434307 GCTTTACAGGAATGTGATTTCATGATG 59.566 37.037 0.00 0.00 39.18 3.07
486 487 7.486647 GCTTTACAGGAATGTGATTTCATGAT 58.513 34.615 0.00 0.00 39.18 2.45
487 488 6.403527 CGCTTTACAGGAATGTGATTTCATGA 60.404 38.462 5.92 0.00 39.18 3.07
488 489 5.740569 CGCTTTACAGGAATGTGATTTCATG 59.259 40.000 0.00 0.00 41.77 3.07
489 490 5.415701 ACGCTTTACAGGAATGTGATTTCAT 59.584 36.000 0.00 0.00 0.00 2.57
490 491 4.759693 ACGCTTTACAGGAATGTGATTTCA 59.240 37.500 0.00 0.00 0.00 2.69
491 492 5.088739 CACGCTTTACAGGAATGTGATTTC 58.911 41.667 0.00 0.00 0.00 2.17
492 493 4.082787 CCACGCTTTACAGGAATGTGATTT 60.083 41.667 0.00 0.00 0.00 2.17
493 494 3.440173 CCACGCTTTACAGGAATGTGATT 59.560 43.478 0.00 0.00 0.00 2.57
494 495 3.009723 CCACGCTTTACAGGAATGTGAT 58.990 45.455 0.00 0.00 0.00 3.06
495 496 2.422597 CCACGCTTTACAGGAATGTGA 58.577 47.619 0.00 0.00 0.00 3.58
496 497 1.135689 GCCACGCTTTACAGGAATGTG 60.136 52.381 0.00 0.00 0.00 3.21
497 498 1.165270 GCCACGCTTTACAGGAATGT 58.835 50.000 0.00 0.00 0.00 2.71
498 499 1.164411 TGCCACGCTTTACAGGAATG 58.836 50.000 0.00 0.00 0.00 2.67
499 500 1.904287 TTGCCACGCTTTACAGGAAT 58.096 45.000 0.00 0.00 0.00 3.01
500 501 1.681538 TTTGCCACGCTTTACAGGAA 58.318 45.000 0.00 0.00 0.00 3.36
501 502 1.681538 TTTTGCCACGCTTTACAGGA 58.318 45.000 0.00 0.00 0.00 3.86
502 503 2.500509 TTTTTGCCACGCTTTACAGG 57.499 45.000 0.00 0.00 0.00 4.00
524 525 7.474190 CATTTTGGAGCACTGAATTTGTTTTT 58.526 30.769 0.00 0.00 0.00 1.94
525 526 6.458615 GCATTTTGGAGCACTGAATTTGTTTT 60.459 34.615 0.00 0.00 0.00 2.43
526 527 5.007921 GCATTTTGGAGCACTGAATTTGTTT 59.992 36.000 0.00 0.00 0.00 2.83
527 528 4.512571 GCATTTTGGAGCACTGAATTTGTT 59.487 37.500 0.00 0.00 0.00 2.83
528 529 4.060205 GCATTTTGGAGCACTGAATTTGT 58.940 39.130 0.00 0.00 0.00 2.83
529 530 4.312443 AGCATTTTGGAGCACTGAATTTG 58.688 39.130 0.00 0.00 0.00 2.32
530 531 4.612264 AGCATTTTGGAGCACTGAATTT 57.388 36.364 0.00 0.00 0.00 1.82
531 532 4.612264 AAGCATTTTGGAGCACTGAATT 57.388 36.364 0.00 0.00 0.00 2.17
532 533 4.612264 AAAGCATTTTGGAGCACTGAAT 57.388 36.364 0.00 0.00 31.62 2.57
544 545 8.945057 TGAAAAAGCTACTTTCAAAAGCATTTT 58.055 25.926 17.31 8.72 44.86 1.82
545 546 8.491331 TGAAAAAGCTACTTTCAAAAGCATTT 57.509 26.923 17.31 0.00 39.28 2.32
546 547 7.981225 TCTGAAAAAGCTACTTTCAAAAGCATT 59.019 29.630 19.14 0.00 41.10 3.56
547 548 7.491682 TCTGAAAAAGCTACTTTCAAAAGCAT 58.508 30.769 19.14 0.00 41.10 3.79
548 549 6.862209 TCTGAAAAAGCTACTTTCAAAAGCA 58.138 32.000 19.14 3.07 41.10 3.91
549 550 6.975197 ACTCTGAAAAAGCTACTTTCAAAAGC 59.025 34.615 19.14 0.00 41.10 3.51
552 553 9.950680 CAATACTCTGAAAAAGCTACTTTCAAA 57.049 29.630 19.14 9.92 41.10 2.69
553 554 9.337396 TCAATACTCTGAAAAAGCTACTTTCAA 57.663 29.630 19.14 9.33 41.10 2.69
554 555 8.902540 TCAATACTCTGAAAAAGCTACTTTCA 57.097 30.769 18.13 18.13 39.79 2.69
559 560 9.899226 ACAAAATCAATACTCTGAAAAAGCTAC 57.101 29.630 0.00 0.00 0.00 3.58
561 562 9.822185 AAACAAAATCAATACTCTGAAAAAGCT 57.178 25.926 0.00 0.00 0.00 3.74
589 590 6.493115 TCACATTTCTAGAAGGCATGGAAAAA 59.507 34.615 16.37 0.00 31.24 1.94
590 591 6.009589 TCACATTTCTAGAAGGCATGGAAAA 58.990 36.000 16.37 0.00 31.24 2.29
591 592 5.569355 TCACATTTCTAGAAGGCATGGAAA 58.431 37.500 16.37 0.00 0.00 3.13
592 593 5.178096 TCACATTTCTAGAAGGCATGGAA 57.822 39.130 16.37 5.01 0.00 3.53
593 594 4.842531 TCACATTTCTAGAAGGCATGGA 57.157 40.909 16.37 9.92 0.00 3.41
594 595 6.095860 TGAAATCACATTTCTAGAAGGCATGG 59.904 38.462 16.37 8.32 46.71 3.66
595 596 7.092137 TGAAATCACATTTCTAGAAGGCATG 57.908 36.000 12.21 12.21 46.71 4.06
596 597 7.201884 CCATGAAATCACATTTCTAGAAGGCAT 60.202 37.037 5.12 0.00 46.71 4.40
597 598 6.095860 CCATGAAATCACATTTCTAGAAGGCA 59.904 38.462 5.12 0.00 46.71 4.75
598 599 6.501781 CCATGAAATCACATTTCTAGAAGGC 58.498 40.000 5.12 0.00 46.71 4.35
599 600 6.501781 GCCATGAAATCACATTTCTAGAAGG 58.498 40.000 5.12 5.08 46.71 3.46
600 601 6.037500 TCGCCATGAAATCACATTTCTAGAAG 59.962 38.462 5.12 0.00 46.71 2.85
601 602 5.879777 TCGCCATGAAATCACATTTCTAGAA 59.120 36.000 0.00 0.00 46.71 2.10
602 603 5.427378 TCGCCATGAAATCACATTTCTAGA 58.573 37.500 9.74 0.00 46.71 2.43
603 604 5.739752 TCGCCATGAAATCACATTTCTAG 57.260 39.130 9.74 3.50 46.71 2.43
604 605 6.698008 ATTCGCCATGAAATCACATTTCTA 57.302 33.333 9.74 0.00 46.71 2.10
605 606 5.587388 ATTCGCCATGAAATCACATTTCT 57.413 34.783 9.74 0.00 46.71 2.52
606 607 6.651755 AAATTCGCCATGAAATCACATTTC 57.348 33.333 0.00 2.55 46.75 2.17
607 608 7.041235 ACAAAAATTCGCCATGAAATCACATTT 60.041 29.630 0.00 0.00 40.71 2.32
608 609 6.427547 ACAAAAATTCGCCATGAAATCACATT 59.572 30.769 0.00 0.00 40.71 2.71
609 610 5.933463 ACAAAAATTCGCCATGAAATCACAT 59.067 32.000 0.00 0.00 40.71 3.21
610 611 5.295950 ACAAAAATTCGCCATGAAATCACA 58.704 33.333 0.00 0.00 40.71 3.58
611 612 5.844301 ACAAAAATTCGCCATGAAATCAC 57.156 34.783 0.00 0.00 40.71 3.06
612 613 6.090628 GCTTACAAAAATTCGCCATGAAATCA 59.909 34.615 0.00 0.00 40.71 2.57
613 614 6.090628 TGCTTACAAAAATTCGCCATGAAATC 59.909 34.615 0.00 0.00 40.71 2.17
614 615 5.931146 TGCTTACAAAAATTCGCCATGAAAT 59.069 32.000 0.00 0.00 40.71 2.17
615 616 5.176590 GTGCTTACAAAAATTCGCCATGAAA 59.823 36.000 0.00 0.00 40.71 2.69
616 617 4.683781 GTGCTTACAAAAATTCGCCATGAA 59.316 37.500 0.00 0.00 41.81 2.57
617 618 4.022416 AGTGCTTACAAAAATTCGCCATGA 60.022 37.500 0.00 0.00 0.00 3.07
618 619 4.236935 AGTGCTTACAAAAATTCGCCATG 58.763 39.130 0.00 0.00 0.00 3.66
619 620 4.519540 AGTGCTTACAAAAATTCGCCAT 57.480 36.364 0.00 0.00 0.00 4.40
620 621 4.314740 AAGTGCTTACAAAAATTCGCCA 57.685 36.364 0.00 0.00 0.00 5.69
621 622 5.695818 TCTAAGTGCTTACAAAAATTCGCC 58.304 37.500 0.00 0.00 0.00 5.54
622 623 6.856426 AGTTCTAAGTGCTTACAAAAATTCGC 59.144 34.615 0.00 0.00 0.00 4.70
623 624 8.782533 AAGTTCTAAGTGCTTACAAAAATTCG 57.217 30.769 0.00 0.00 0.00 3.34
626 627 9.869757 ACAAAAGTTCTAAGTGCTTACAAAAAT 57.130 25.926 0.00 0.00 0.00 1.82
627 628 9.349145 GACAAAAGTTCTAAGTGCTTACAAAAA 57.651 29.630 0.00 0.00 0.00 1.94
628 629 8.516234 TGACAAAAGTTCTAAGTGCTTACAAAA 58.484 29.630 0.00 0.00 0.00 2.44
629 630 8.046294 TGACAAAAGTTCTAAGTGCTTACAAA 57.954 30.769 0.00 0.00 0.00 2.83
630 631 7.618502 TGACAAAAGTTCTAAGTGCTTACAA 57.381 32.000 0.00 0.00 0.00 2.41
631 632 7.618502 TTGACAAAAGTTCTAAGTGCTTACA 57.381 32.000 0.00 0.00 0.00 2.41
632 633 8.129211 ACATTGACAAAAGTTCTAAGTGCTTAC 58.871 33.333 0.00 0.00 0.00 2.34
633 634 8.220755 ACATTGACAAAAGTTCTAAGTGCTTA 57.779 30.769 0.00 0.00 0.00 3.09
634 635 7.100458 ACATTGACAAAAGTTCTAAGTGCTT 57.900 32.000 0.00 0.00 0.00 3.91
635 636 6.699575 ACATTGACAAAAGTTCTAAGTGCT 57.300 33.333 0.00 0.00 0.00 4.40
636 637 7.702348 AGAAACATTGACAAAAGTTCTAAGTGC 59.298 33.333 9.09 0.00 0.00 4.40
637 638 9.226345 GAGAAACATTGACAAAAGTTCTAAGTG 57.774 33.333 9.09 0.00 0.00 3.16
638 639 9.178758 AGAGAAACATTGACAAAAGTTCTAAGT 57.821 29.630 9.09 0.00 0.00 2.24
639 640 9.657121 GAGAGAAACATTGACAAAAGTTCTAAG 57.343 33.333 9.09 0.00 0.00 2.18
640 641 9.173021 TGAGAGAAACATTGACAAAAGTTCTAA 57.827 29.630 9.09 0.00 0.00 2.10
641 642 8.731275 TGAGAGAAACATTGACAAAAGTTCTA 57.269 30.769 9.09 0.00 0.00 2.10
642 643 7.630242 TGAGAGAAACATTGACAAAAGTTCT 57.370 32.000 9.09 9.17 0.00 3.01
643 644 8.687824 TTTGAGAGAAACATTGACAAAAGTTC 57.312 30.769 9.09 5.33 0.00 3.01
644 645 9.487790 TTTTTGAGAGAAACATTGACAAAAGTT 57.512 25.926 0.00 0.00 37.18 2.66
697 698 9.476202 GGCTGAACAGTAAAATCAAAACTAAAT 57.524 29.630 3.77 0.00 0.00 1.40
698 699 7.646130 CGGCTGAACAGTAAAATCAAAACTAAA 59.354 33.333 3.77 0.00 0.00 1.85
699 700 7.012515 TCGGCTGAACAGTAAAATCAAAACTAA 59.987 33.333 0.00 0.00 0.00 2.24
700 701 6.483974 TCGGCTGAACAGTAAAATCAAAACTA 59.516 34.615 0.00 0.00 0.00 2.24
701 702 5.298276 TCGGCTGAACAGTAAAATCAAAACT 59.702 36.000 0.00 0.00 0.00 2.66
702 703 5.516090 TCGGCTGAACAGTAAAATCAAAAC 58.484 37.500 0.00 0.00 0.00 2.43
703 704 5.757886 CTCGGCTGAACAGTAAAATCAAAA 58.242 37.500 0.00 0.00 0.00 2.44
704 705 4.320202 GCTCGGCTGAACAGTAAAATCAAA 60.320 41.667 0.00 0.00 0.00 2.69
705 706 3.188460 GCTCGGCTGAACAGTAAAATCAA 59.812 43.478 0.00 0.00 0.00 2.57
706 707 2.742053 GCTCGGCTGAACAGTAAAATCA 59.258 45.455 0.00 0.00 0.00 2.57
707 708 3.003480 AGCTCGGCTGAACAGTAAAATC 58.997 45.455 0.00 0.00 37.57 2.17
708 709 3.003480 GAGCTCGGCTGAACAGTAAAAT 58.997 45.455 0.00 0.00 39.88 1.82
709 710 2.224185 TGAGCTCGGCTGAACAGTAAAA 60.224 45.455 9.64 0.00 39.88 1.52
710 711 1.343142 TGAGCTCGGCTGAACAGTAAA 59.657 47.619 9.64 0.00 39.88 2.01
711 712 0.966179 TGAGCTCGGCTGAACAGTAA 59.034 50.000 9.64 0.00 39.88 2.24
712 713 1.186200 ATGAGCTCGGCTGAACAGTA 58.814 50.000 9.64 0.00 39.88 2.74
713 714 0.322975 AATGAGCTCGGCTGAACAGT 59.677 50.000 9.64 0.00 39.88 3.55
714 715 1.129998 CAAATGAGCTCGGCTGAACAG 59.870 52.381 9.64 0.00 39.88 3.16
715 716 1.159285 CAAATGAGCTCGGCTGAACA 58.841 50.000 9.64 0.00 39.88 3.18
716 717 1.396301 CTCAAATGAGCTCGGCTGAAC 59.604 52.381 9.64 0.00 39.88 3.18
717 718 1.730501 CTCAAATGAGCTCGGCTGAA 58.269 50.000 9.64 0.00 39.88 3.02
718 719 3.448267 CTCAAATGAGCTCGGCTGA 57.552 52.632 9.64 9.91 39.88 4.26
727 728 0.674581 TGCACCCGAGCTCAAATGAG 60.675 55.000 15.40 6.05 44.75 2.90
728 729 0.674581 CTGCACCCGAGCTCAAATGA 60.675 55.000 15.40 0.00 34.99 2.57
729 730 0.674581 TCTGCACCCGAGCTCAAATG 60.675 55.000 15.40 9.02 34.99 2.32
730 731 0.036732 TTCTGCACCCGAGCTCAAAT 59.963 50.000 15.40 0.00 34.99 2.32
731 732 0.179032 TTTCTGCACCCGAGCTCAAA 60.179 50.000 15.40 0.86 34.99 2.69
732 733 0.884704 GTTTCTGCACCCGAGCTCAA 60.885 55.000 15.40 0.00 34.99 3.02
733 734 1.301716 GTTTCTGCACCCGAGCTCA 60.302 57.895 15.40 0.00 34.99 4.26
734 735 1.004440 AGTTTCTGCACCCGAGCTC 60.004 57.895 2.73 2.73 34.99 4.09
735 736 1.004440 GAGTTTCTGCACCCGAGCT 60.004 57.895 0.00 0.00 34.99 4.09
736 737 2.035442 GGAGTTTCTGCACCCGAGC 61.035 63.158 0.00 0.00 0.00 5.03
737 738 1.738099 CGGAGTTTCTGCACCCGAG 60.738 63.158 0.00 0.00 42.49 4.63
738 739 2.342279 CGGAGTTTCTGCACCCGA 59.658 61.111 0.00 0.00 42.49 5.14
744 745 3.479269 CGGACGCGGAGTTTCTGC 61.479 66.667 12.47 0.00 45.04 4.26
745 746 0.736325 ATTCGGACGCGGAGTTTCTG 60.736 55.000 12.47 3.23 0.00 3.02
746 747 0.458025 GATTCGGACGCGGAGTTTCT 60.458 55.000 12.47 0.00 0.00 2.52
747 748 0.734942 TGATTCGGACGCGGAGTTTC 60.735 55.000 12.47 0.00 0.00 2.78
748 749 0.736325 CTGATTCGGACGCGGAGTTT 60.736 55.000 12.47 0.00 0.00 2.66
749 750 1.153823 CTGATTCGGACGCGGAGTT 60.154 57.895 12.47 0.00 0.00 3.01
750 751 1.384989 ATCTGATTCGGACGCGGAGT 61.385 55.000 12.47 0.00 0.00 3.85
751 752 0.936764 CATCTGATTCGGACGCGGAG 60.937 60.000 12.47 0.36 0.00 4.63
752 753 1.065764 CATCTGATTCGGACGCGGA 59.934 57.895 12.47 0.00 0.00 5.54
753 754 1.065764 TCATCTGATTCGGACGCGG 59.934 57.895 12.47 0.00 0.00 6.46
754 755 0.248661 AGTCATCTGATTCGGACGCG 60.249 55.000 3.53 3.53 35.49 6.01
755 756 1.927895 AAGTCATCTGATTCGGACGC 58.072 50.000 0.00 0.00 35.49 5.19
756 757 4.201920 TGAGTAAGTCATCTGATTCGGACG 60.202 45.833 0.00 0.00 35.49 4.79
757 758 5.250235 TGAGTAAGTCATCTGATTCGGAC 57.750 43.478 0.00 0.00 0.00 4.79
758 759 5.914898 TTGAGTAAGTCATCTGATTCGGA 57.085 39.130 0.00 0.00 34.17 4.55
759 760 6.968131 TTTTGAGTAAGTCATCTGATTCGG 57.032 37.500 0.00 0.00 34.17 4.30
789 790 7.280428 TGCAATGTTTGTTTTCATGTGATTCTT 59.720 29.630 0.00 0.00 0.00 2.52
790 791 6.762187 TGCAATGTTTGTTTTCATGTGATTCT 59.238 30.769 0.00 0.00 0.00 2.40
791 792 6.946165 TGCAATGTTTGTTTTCATGTGATTC 58.054 32.000 0.00 0.00 0.00 2.52
792 793 6.922247 TGCAATGTTTGTTTTCATGTGATT 57.078 29.167 0.00 0.00 0.00 2.57
793 794 6.922247 TTGCAATGTTTGTTTTCATGTGAT 57.078 29.167 0.00 0.00 0.00 3.06
797 798 7.374754 CACTTGATTGCAATGTTTGTTTTCATG 59.625 33.333 18.59 10.41 32.68 3.07
864 865 6.334102 AGTAGAAAGTCTTCGTTCAGTCAT 57.666 37.500 0.00 0.00 36.61 3.06
896 897 2.840066 CGGCGGCCTCTCTGACTAG 61.840 68.421 18.34 0.00 0.00 2.57
930 931 3.360340 GTCTTGGCGCTTGCTGCT 61.360 61.111 7.64 0.00 40.11 4.24
931 932 4.410743 GGTCTTGGCGCTTGCTGC 62.411 66.667 7.64 0.00 39.13 5.25
932 933 2.803155 TAGGGTCTTGGCGCTTGCTG 62.803 60.000 7.64 0.00 39.13 4.41
1204 1250 2.835895 GGAGGAGGAGAGGTCGGC 60.836 72.222 0.00 0.00 0.00 5.54
1530 1582 1.355916 GTCGTCGAAGGATCCGAGG 59.644 63.158 5.98 6.18 41.52 4.63
1788 1855 4.212913 TCGATGCTGAGGCGCTCC 62.213 66.667 7.64 0.00 42.25 4.70
1863 1930 3.308705 ACGACCGTCTTCACCCCC 61.309 66.667 0.00 0.00 0.00 5.40
2330 2397 1.944709 CATTGCTCTCATCGCCATCAA 59.055 47.619 0.00 0.00 0.00 2.57
2475 2551 3.969976 ACTCTAGGGCAGCATCTTCATAA 59.030 43.478 0.00 0.00 0.00 1.90
2493 2569 6.839124 TTGTTCATGGAAAATATGCACTCT 57.161 33.333 0.00 0.00 29.34 3.24
2571 2647 1.802880 CGCCTTCTTACCCAGTGATCG 60.803 57.143 0.00 0.00 0.00 3.69
3185 3261 9.104965 GTACAATATTTCTTAGTGCACACCATA 57.895 33.333 21.04 6.63 28.84 2.74
3253 3329 1.535028 TGGTCAATTGCAGCTAACACG 59.465 47.619 0.00 0.00 0.00 4.49
3279 3355 8.950210 CAGGTGATTTTCAATGTCTTATGTAGT 58.050 33.333 0.00 0.00 0.00 2.73
3280 3356 9.166173 TCAGGTGATTTTCAATGTCTTATGTAG 57.834 33.333 0.00 0.00 0.00 2.74
3281 3357 9.685276 ATCAGGTGATTTTCAATGTCTTATGTA 57.315 29.630 0.00 0.00 0.00 2.29
3334 3413 4.495844 GGCACGGTTGAGCTAATAATGAAC 60.496 45.833 0.00 0.00 31.76 3.18
3377 3456 7.784073 TGAATATCATATCCACCCAACAATTGT 59.216 33.333 4.92 4.92 0.00 2.71
3378 3457 8.180706 TGAATATCATATCCACCCAACAATTG 57.819 34.615 3.24 3.24 0.00 2.32
3388 3476 9.716531 TCTCATTCAACTGAATATCATATCCAC 57.283 33.333 4.66 0.00 42.41 4.02
3530 3618 6.017830 AGCTACTTTACAGAGGGAGTAGTTT 58.982 40.000 10.12 0.00 42.13 2.66
3538 3626 4.081420 ACATGTCAGCTACTTTACAGAGGG 60.081 45.833 0.00 0.00 0.00 4.30
3539 3627 4.867047 CACATGTCAGCTACTTTACAGAGG 59.133 45.833 0.00 0.00 0.00 3.69
3540 3628 5.714047 TCACATGTCAGCTACTTTACAGAG 58.286 41.667 0.00 0.00 0.00 3.35
3541 3629 5.722021 TCACATGTCAGCTACTTTACAGA 57.278 39.130 0.00 0.00 0.00 3.41
3542 3630 7.761704 ACTTATCACATGTCAGCTACTTTACAG 59.238 37.037 0.00 0.00 0.00 2.74
3543 3631 7.545615 CACTTATCACATGTCAGCTACTTTACA 59.454 37.037 0.00 0.00 0.00 2.41
3544 3632 7.545965 ACACTTATCACATGTCAGCTACTTTAC 59.454 37.037 0.00 0.00 0.00 2.01
3545 3633 7.545615 CACACTTATCACATGTCAGCTACTTTA 59.454 37.037 0.00 0.00 0.00 1.85
3546 3634 6.369890 CACACTTATCACATGTCAGCTACTTT 59.630 38.462 0.00 0.00 0.00 2.66
3547 3635 5.871524 CACACTTATCACATGTCAGCTACTT 59.128 40.000 0.00 0.00 0.00 2.24
3548 3636 5.185828 TCACACTTATCACATGTCAGCTACT 59.814 40.000 0.00 0.00 0.00 2.57
3549 3637 5.410924 TCACACTTATCACATGTCAGCTAC 58.589 41.667 0.00 0.00 0.00 3.58
3550 3638 5.659440 TCACACTTATCACATGTCAGCTA 57.341 39.130 0.00 0.00 0.00 3.32
3551 3639 4.541973 TCACACTTATCACATGTCAGCT 57.458 40.909 0.00 0.00 0.00 4.24
3552 3640 5.611796 TTTCACACTTATCACATGTCAGC 57.388 39.130 0.00 0.00 0.00 4.26
3553 3641 6.605849 CCTTTTCACACTTATCACATGTCAG 58.394 40.000 0.00 0.00 0.00 3.51
3653 6960 4.083581 GCAATAGCTCACAATGAAACGT 57.916 40.909 0.00 0.00 37.91 3.99
3687 6995 2.507058 TGAAGTCATCCTGCAGGCTTAT 59.493 45.455 28.91 13.94 34.44 1.73
3699 7007 4.874966 CCAGGTCAGAGAATTGAAGTCATC 59.125 45.833 0.00 0.00 0.00 2.92
3704 7012 3.347077 AGCCAGGTCAGAGAATTGAAG 57.653 47.619 0.00 0.00 0.00 3.02
3710 7018 0.252239 TGCCTAGCCAGGTCAGAGAA 60.252 55.000 0.00 0.00 44.68 2.87
3713 7021 1.064003 TTTTGCCTAGCCAGGTCAGA 58.936 50.000 0.00 0.00 44.68 3.27
3752 11371 1.405463 GCCTCTTTTTCCTTATGGGCG 59.595 52.381 0.00 0.00 34.39 6.13
3766 11387 4.130118 CGCATAAATTCCTACTGCCTCTT 58.870 43.478 0.00 0.00 0.00 2.85
3768 11389 2.224314 GCGCATAAATTCCTACTGCCTC 59.776 50.000 0.30 0.00 0.00 4.70
3779 11400 6.992715 AGTTCTACTAATGGAGCGCATAAATT 59.007 34.615 11.47 6.52 0.00 1.82
3787 11408 7.827701 TGGATAATAGTTCTACTAATGGAGCG 58.172 38.462 0.00 0.00 33.89 5.03
3788 11409 9.425577 GTTGGATAATAGTTCTACTAATGGAGC 57.574 37.037 0.00 0.00 33.89 4.70
3809 11430 6.659745 TGCTTAACAGTTCTACTAGTTGGA 57.340 37.500 0.00 0.00 0.00 3.53
3894 11569 9.682465 ACCCTAATTTCTTCTACTAATTGGTTC 57.318 33.333 0.00 0.00 0.00 3.62
3948 11623 7.241042 TCTTAGCACTGTAAATAAGAGGTGT 57.759 36.000 5.10 0.00 32.11 4.16
3999 11674 7.339482 GGGTGTCTGAATTCCTAATCTAGTTT 58.661 38.462 2.27 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.