Multiple sequence alignment - TraesCS7A01G133800

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BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G133800 chr7A 100.000 2360 0 0 1 2360 85854674 85857033 0.000000e+00 4359.0
1 TraesCS7A01G133800 chr7A 97.529 607 15 0 1750 2356 685072304 685071698 0.000000e+00 1038.0
2 TraesCS7A01G133800 chr7A 97.347 603 16 0 1754 2356 85874251 85874853 0.000000e+00 1026.0
3 TraesCS7A01G133800 chr7A 97.347 603 16 0 1753 2355 353985131 353984529 0.000000e+00 1026.0
4 TraesCS7A01G133800 chr7A 97.044 609 17 1 1748 2355 336828165 336827557 0.000000e+00 1024.0
5 TraesCS7A01G133800 chr7A 95.495 222 9 1 1376 1596 166832232 166832453 1.040000e-93 353.0
6 TraesCS7A01G133800 chr7A 89.222 167 17 1 1586 1752 85798499 85798664 8.550000e-50 207.0
7 TraesCS7A01G133800 chr1D 94.909 766 33 3 610 1375 205134711 205133952 0.000000e+00 1194.0
8 TraesCS7A01G133800 chr1D 95.467 750 29 3 627 1375 60171816 60171071 0.000000e+00 1192.0
9 TraesCS7A01G133800 chr1D 95.327 749 32 1 627 1375 247505758 247505013 0.000000e+00 1186.0
10 TraesCS7A01G133800 chr1D 95.694 627 24 3 1 625 408414046 408414671 0.000000e+00 1005.0
11 TraesCS7A01G133800 chr1D 95.548 629 24 4 1 627 10681438 10680812 0.000000e+00 1003.0
12 TraesCS7A01G133800 chr1D 84.704 608 85 8 1754 2356 284052707 284053311 3.360000e-168 601.0
13 TraesCS7A01G133800 chr1D 83.598 567 89 4 1788 2351 175650528 175651093 1.610000e-146 529.0
14 TraesCS7A01G133800 chr1D 96.262 214 8 0 1376 1589 416899164 416898951 3.730000e-93 351.0
15 TraesCS7A01G133800 chr1D 96.244 213 8 0 1374 1586 17206244 17206032 1.340000e-92 350.0
16 TraesCS7A01G133800 chr1D 96.667 210 7 0 1376 1585 241206497 241206288 1.340000e-92 350.0
17 TraesCS7A01G133800 chr1D 95.434 219 7 3 1376 1592 370179543 370179760 1.740000e-91 346.0
18 TraesCS7A01G133800 chr2D 95.060 749 34 1 627 1375 73126872 73126127 0.000000e+00 1175.0
19 TraesCS7A01G133800 chr2D 94.526 749 37 2 628 1375 621748803 621749548 0.000000e+00 1153.0
20 TraesCS7A01G133800 chr2D 95.994 624 22 3 6 627 54748496 54747874 0.000000e+00 1011.0
21 TraesCS7A01G133800 chr5D 94.226 762 38 4 616 1375 275171761 275171004 0.000000e+00 1158.0
22 TraesCS7A01G133800 chr5D 95.866 629 23 3 1 627 263408241 263408868 0.000000e+00 1014.0
23 TraesCS7A01G133800 chr5D 95.694 627 24 3 1 625 49540853 49540228 0.000000e+00 1005.0
24 TraesCS7A01G133800 chr5D 85.434 611 77 12 1753 2356 246979674 246979069 1.990000e-175 625.0
25 TraesCS7A01G133800 chr5D 85.569 589 80 5 1753 2338 356032 356618 1.550000e-171 612.0
26 TraesCS7A01G133800 chr5D 84.411 603 88 6 1753 2351 141057 141657 2.610000e-164 588.0
27 TraesCS7A01G133800 chr5D 83.770 610 87 10 1754 2356 246870115 246869511 3.400000e-158 568.0
28 TraesCS7A01G133800 chr5D 97.143 210 6 0 1376 1585 450906249 450906458 2.880000e-94 355.0
29 TraesCS7A01G133800 chr5D 97.143 210 6 0 1376 1585 561027991 561028200 2.880000e-94 355.0
30 TraesCS7A01G133800 chr5D 95.890 219 9 0 1376 1594 563999928 563999710 2.880000e-94 355.0
31 TraesCS7A01G133800 chr7B 94.526 749 37 2 627 1375 720163389 720162645 0.000000e+00 1153.0
32 TraesCS7A01G133800 chr7B 89.024 164 17 1 1586 1748 34300985 34301148 3.980000e-48 202.0
33 TraesCS7A01G133800 chr3D 94.751 743 36 1 633 1375 613711276 613712015 0.000000e+00 1153.0
34 TraesCS7A01G133800 chr3D 95.701 628 23 3 1 627 64365236 64364612 0.000000e+00 1007.0
35 TraesCS7A01G133800 chr3D 95.694 627 24 3 1 625 287357630 287357005 0.000000e+00 1005.0
36 TraesCS7A01G133800 chr3D 84.211 608 86 8 1754 2356 442809491 442810093 1.220000e-162 582.0
37 TraesCS7A01G133800 chr3D 83.087 609 93 8 1754 2356 39193307 39192703 1.590000e-151 545.0
38 TraesCS7A01G133800 chr3D 96.698 212 7 0 1376 1587 108215853 108215642 1.040000e-93 353.0
39 TraesCS7A01G133800 chr3D 95.853 217 7 2 1376 1590 536360318 536360534 1.340000e-92 350.0
40 TraesCS7A01G133800 chr6D 94.400 750 39 1 626 1375 142136693 142135947 0.000000e+00 1149.0
41 TraesCS7A01G133800 chr6D 95.548 629 25 3 1 627 142769974 142770601 0.000000e+00 1003.0
42 TraesCS7A01G133800 chr6D 83.882 608 83 13 1752 2351 369495314 369494714 1.220000e-157 566.0
43 TraesCS7A01G133800 chr6D 82.545 613 90 15 1754 2357 369468438 369467834 7.470000e-145 523.0
44 TraesCS7A01G133800 chr6D 80.193 621 99 18 1754 2356 395744679 395744065 5.990000e-121 444.0
45 TraesCS7A01G133800 chr6D 80.161 620 100 19 1754 2356 292350779 292350166 2.150000e-120 442.0
46 TraesCS7A01G133800 chr6D 81.019 569 91 12 1803 2356 222834509 222835075 1.000000e-118 436.0
47 TraesCS7A01G133800 chr6D 96.667 210 7 0 1376 1585 431865174 431865383 1.340000e-92 350.0
48 TraesCS7A01G133800 chr6D 96.667 210 7 0 1376 1585 453890374 453890165 1.340000e-92 350.0
49 TraesCS7A01G133800 chr6D 96.209 211 8 0 1376 1586 95345173 95345383 1.740000e-91 346.0
50 TraesCS7A01G133800 chr6D 96.226 212 6 2 1376 1585 472486459 472486670 1.740000e-91 346.0
51 TraesCS7A01G133800 chr6D 96.190 210 8 0 1376 1585 44745928 44745719 6.240000e-91 344.0
52 TraesCS7A01G133800 chr6D 96.190 210 8 0 1376 1585 193521977 193522186 6.240000e-91 344.0
53 TraesCS7A01G133800 chr6D 96.190 210 8 0 1376 1585 230744202 230744411 6.240000e-91 344.0
54 TraesCS7A01G133800 chr6D 96.209 211 7 1 1376 1585 343995601 343995811 6.240000e-91 344.0
55 TraesCS7A01G133800 chr6D 96.209 211 6 2 1376 1585 363233395 363233604 6.240000e-91 344.0
56 TraesCS7A01G133800 chr6D 94.144 222 11 2 1376 1595 44547038 44546817 1.040000e-88 337.0
57 TraesCS7A01G133800 chr6D 92.373 236 15 2 1376 1608 154799442 154799207 1.350000e-87 333.0
58 TraesCS7A01G133800 chr6D 76.502 566 102 29 1813 2356 275488763 275488207 1.790000e-71 279.0
59 TraesCS7A01G133800 chr4A 97.844 603 13 0 1754 2356 425941564 425940962 0.000000e+00 1042.0
60 TraesCS7A01G133800 chr4A 97.355 605 15 1 1753 2356 454110553 454109949 0.000000e+00 1027.0
61 TraesCS7A01G133800 chr4A 97.181 603 17 0 1754 2356 425949548 425948946 0.000000e+00 1020.0
62 TraesCS7A01G133800 chr3A 97.844 603 13 0 1754 2356 176825107 176824505 0.000000e+00 1042.0
63 TraesCS7A01G133800 chr3A 97.143 210 6 0 1376 1585 249840014 249840223 2.880000e-94 355.0
64 TraesCS7A01G133800 chr1A 97.690 606 14 0 1751 2356 281673460 281674065 0.000000e+00 1042.0
65 TraesCS7A01G133800 chr1A 97.377 610 15 1 1748 2356 154334099 154334708 0.000000e+00 1037.0
66 TraesCS7A01G133800 chr1A 97.181 603 17 0 1754 2356 580361016 580361618 0.000000e+00 1020.0
67 TraesCS7A01G133800 chr1A 96.865 606 19 0 1751 2356 92777899 92778504 0.000000e+00 1014.0
68 TraesCS7A01G133800 chr1A 97.020 604 17 1 1754 2357 92786159 92786761 0.000000e+00 1014.0
69 TraesCS7A01G133800 chr1A 97.015 603 18 0 1754 2356 291454355 291453753 0.000000e+00 1014.0
70 TraesCS7A01G133800 chr1A 96.860 605 19 0 1754 2358 467823309 467823913 0.000000e+00 1013.0
71 TraesCS7A01G133800 chr1A 96.694 605 20 0 1754 2358 467814211 467814815 0.000000e+00 1007.0
72 TraesCS7A01G133800 chr1A 96.683 603 20 0 1754 2356 187734347 187733745 0.000000e+00 1003.0
73 TraesCS7A01G133800 chr1A 96.279 215 7 1 1376 1590 487136397 487136184 3.730000e-93 351.0
74 TraesCS7A01G133800 chr1A 95.045 222 9 2 1376 1596 80459938 80459718 4.830000e-92 348.0
75 TraesCS7A01G133800 chr5A 97.347 603 15 1 1754 2356 580412648 580412047 0.000000e+00 1024.0
76 TraesCS7A01G133800 chr6A 97.185 604 16 1 1754 2357 7414472 7413870 0.000000e+00 1020.0
77 TraesCS7A01G133800 chr6A 97.181 603 17 0 1754 2356 123473768 123474370 0.000000e+00 1020.0
78 TraesCS7A01G133800 chr6A 97.015 603 18 0 1754 2356 82857026 82857628 0.000000e+00 1014.0
79 TraesCS7A01G133800 chr6A 97.020 604 17 1 1754 2357 123482839 123483441 0.000000e+00 1014.0
80 TraesCS7A01G133800 chr6A 97.143 210 6 0 1376 1585 135177749 135177958 2.880000e-94 355.0
81 TraesCS7A01G133800 chr7D 95.866 629 23 3 1 627 236003134 236002507 0.000000e+00 1014.0
82 TraesCS7A01G133800 chr7D 88.757 169 18 1 1586 1753 84507223 84507391 3.070000e-49 206.0
83 TraesCS7A01G133800 chrUn 84.236 628 80 14 1743 2353 334814177 334814802 5.620000e-166 593.0
84 TraesCS7A01G133800 chrUn 84.201 557 76 8 1803 2356 38198824 38198277 4.470000e-147 531.0
85 TraesCS7A01G133800 chrUn 82.278 553 87 7 1803 2353 60206219 60206762 3.550000e-128 468.0
86 TraesCS7A01G133800 chrUn 80.354 621 97 19 1754 2356 75525932 75525319 4.630000e-122 448.0
87 TraesCS7A01G133800 chrUn 80.098 613 99 14 1754 2353 362471038 362471640 3.600000e-118 435.0
88 TraesCS7A01G133800 chrUn 79.754 568 81 22 1804 2352 368675979 368675427 4.760000e-102 381.0
89 TraesCS7A01G133800 chrUn 79.718 567 83 20 1804 2352 409496013 409496565 4.760000e-102 381.0
90 TraesCS7A01G133800 chrUn 78.140 613 111 14 1754 2353 426743844 426744446 3.710000e-98 368.0
91 TraesCS7A01G133800 chrUn 85.124 363 35 13 2009 2356 75540760 75540402 1.040000e-93 353.0
92 TraesCS7A01G133800 chrUn 95.775 213 7 2 1376 1586 26607812 26607600 2.250000e-90 342.0
93 TraesCS7A01G133800 chrUn 96.172 209 6 2 1380 1586 21529639 21529847 8.080000e-90 340.0
94 TraesCS7A01G133800 chrUn 95.755 212 7 2 1376 1585 102433874 102433663 8.080000e-90 340.0
95 TraesCS7A01G133800 chrUn 95.714 210 9 0 1376 1585 56021421 56021630 2.910000e-89 339.0
96 TraesCS7A01G133800 chrUn 95.714 210 9 0 1376 1585 93898932 93898723 2.910000e-89 339.0
97 TraesCS7A01G133800 chrUn 95.714 210 9 0 1376 1585 93905732 93905523 2.910000e-89 339.0
98 TraesCS7A01G133800 chrUn 95.735 211 7 2 1377 1585 103897565 103897775 2.910000e-89 339.0
99 TraesCS7A01G133800 chrUn 95.714 210 9 0 1376 1585 326087815 326088024 2.910000e-89 339.0
100 TraesCS7A01G133800 chrUn 95.714 210 9 0 1376 1585 331739952 331740161 2.910000e-89 339.0
101 TraesCS7A01G133800 chrUn 83.155 374 57 5 1753 2123 222141600 222141970 1.040000e-88 337.0
102 TraesCS7A01G133800 chrUn 94.884 215 9 2 1376 1589 27000823 27000610 3.760000e-88 335.0
103 TraesCS7A01G133800 chrUn 82.620 374 59 5 1753 2123 144681839 144681469 2.260000e-85 326.0
104 TraesCS7A01G133800 chrUn 82.353 374 60 5 1753 2123 162191473 162191103 1.050000e-83 320.0
105 TraesCS7A01G133800 chrUn 86.831 243 28 4 2116 2356 162189387 162189147 3.870000e-68 268.0
106 TraesCS7A01G133800 chrUn 86.831 243 28 4 2116 2356 222143671 222143911 3.870000e-68 268.0
107 TraesCS7A01G133800 chrUn 86.420 243 29 4 2116 2356 144679752 144679512 1.800000e-66 263.0
108 TraesCS7A01G133800 chrUn 96.429 56 2 0 2301 2356 414119181 414119236 2.500000e-15 93.5
109 TraesCS7A01G133800 chrUn 100.000 28 0 0 1754 1781 368676008 368675981 4.000000e-03 52.8
110 TraesCS7A01G133800 chrUn 100.000 28 0 0 1754 1781 409495984 409496011 4.000000e-03 52.8
111 TraesCS7A01G133800 chr4B 84.262 610 84 10 1754 2356 279004255 279004859 3.380000e-163 584.0
112 TraesCS7A01G133800 chr4D 82.923 609 92 12 1753 2353 249836113 249836717 2.670000e-149 538.0
113 TraesCS7A01G133800 chr4D 82.895 608 89 12 1753 2351 149247516 149246915 1.240000e-147 532.0
114 TraesCS7A01G133800 chr4D 82.285 604 100 6 1754 2352 149240390 149239789 1.250000e-142 516.0
115 TraesCS7A01G133800 chr4D 96.667 210 7 0 1376 1585 16455374 16455165 1.340000e-92 350.0
116 TraesCS7A01G133800 chr4D 96.667 210 7 0 1376 1585 342074801 342074592 1.340000e-92 350.0
117 TraesCS7A01G133800 chr4D 96.244 213 6 2 1376 1586 434074979 434075191 4.830000e-92 348.0
118 TraesCS7A01G133800 chr4D 96.226 212 6 1 1376 1585 361593627 361593838 1.740000e-91 346.0
119 TraesCS7A01G133800 chr4D 95.775 213 9 0 1376 1588 450664249 450664037 6.240000e-91 344.0
120 TraesCS7A01G133800 chr4D 95.392 217 7 3 1376 1590 456701330 456701115 2.250000e-90 342.0
121 TraesCS7A01G133800 chr4D 94.595 222 8 4 1376 1593 385596515 385596294 8.080000e-90 340.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G133800 chr7A 85854674 85857033 2359 False 4359.0 4359 100.000 1 2360 1 chr7A.!!$F2 2359
1 TraesCS7A01G133800 chr7A 685071698 685072304 606 True 1038.0 1038 97.529 1750 2356 1 chr7A.!!$R3 606
2 TraesCS7A01G133800 chr7A 85874251 85874853 602 False 1026.0 1026 97.347 1754 2356 1 chr7A.!!$F3 602
3 TraesCS7A01G133800 chr7A 353984529 353985131 602 True 1026.0 1026 97.347 1753 2355 1 chr7A.!!$R2 602
4 TraesCS7A01G133800 chr7A 336827557 336828165 608 True 1024.0 1024 97.044 1748 2355 1 chr7A.!!$R1 607
5 TraesCS7A01G133800 chr1D 205133952 205134711 759 True 1194.0 1194 94.909 610 1375 1 chr1D.!!$R4 765
6 TraesCS7A01G133800 chr1D 60171071 60171816 745 True 1192.0 1192 95.467 627 1375 1 chr1D.!!$R3 748
7 TraesCS7A01G133800 chr1D 247505013 247505758 745 True 1186.0 1186 95.327 627 1375 1 chr1D.!!$R6 748
8 TraesCS7A01G133800 chr1D 408414046 408414671 625 False 1005.0 1005 95.694 1 625 1 chr1D.!!$F4 624
9 TraesCS7A01G133800 chr1D 10680812 10681438 626 True 1003.0 1003 95.548 1 627 1 chr1D.!!$R1 626
10 TraesCS7A01G133800 chr1D 284052707 284053311 604 False 601.0 601 84.704 1754 2356 1 chr1D.!!$F2 602
11 TraesCS7A01G133800 chr1D 175650528 175651093 565 False 529.0 529 83.598 1788 2351 1 chr1D.!!$F1 563
12 TraesCS7A01G133800 chr2D 73126127 73126872 745 True 1175.0 1175 95.060 627 1375 1 chr2D.!!$R2 748
13 TraesCS7A01G133800 chr2D 621748803 621749548 745 False 1153.0 1153 94.526 628 1375 1 chr2D.!!$F1 747
14 TraesCS7A01G133800 chr2D 54747874 54748496 622 True 1011.0 1011 95.994 6 627 1 chr2D.!!$R1 621
15 TraesCS7A01G133800 chr5D 275171004 275171761 757 True 1158.0 1158 94.226 616 1375 1 chr5D.!!$R4 759
16 TraesCS7A01G133800 chr5D 263408241 263408868 627 False 1014.0 1014 95.866 1 627 1 chr5D.!!$F3 626
17 TraesCS7A01G133800 chr5D 49540228 49540853 625 True 1005.0 1005 95.694 1 625 1 chr5D.!!$R1 624
18 TraesCS7A01G133800 chr5D 246979069 246979674 605 True 625.0 625 85.434 1753 2356 1 chr5D.!!$R3 603
19 TraesCS7A01G133800 chr5D 356032 356618 586 False 612.0 612 85.569 1753 2338 1 chr5D.!!$F2 585
20 TraesCS7A01G133800 chr5D 141057 141657 600 False 588.0 588 84.411 1753 2351 1 chr5D.!!$F1 598
21 TraesCS7A01G133800 chr5D 246869511 246870115 604 True 568.0 568 83.770 1754 2356 1 chr5D.!!$R2 602
22 TraesCS7A01G133800 chr7B 720162645 720163389 744 True 1153.0 1153 94.526 627 1375 1 chr7B.!!$R1 748
23 TraesCS7A01G133800 chr3D 613711276 613712015 739 False 1153.0 1153 94.751 633 1375 1 chr3D.!!$F3 742
24 TraesCS7A01G133800 chr3D 64364612 64365236 624 True 1007.0 1007 95.701 1 627 1 chr3D.!!$R2 626
25 TraesCS7A01G133800 chr3D 287357005 287357630 625 True 1005.0 1005 95.694 1 625 1 chr3D.!!$R4 624
26 TraesCS7A01G133800 chr3D 442809491 442810093 602 False 582.0 582 84.211 1754 2356 1 chr3D.!!$F1 602
27 TraesCS7A01G133800 chr3D 39192703 39193307 604 True 545.0 545 83.087 1754 2356 1 chr3D.!!$R1 602
28 TraesCS7A01G133800 chr6D 142135947 142136693 746 True 1149.0 1149 94.400 626 1375 1 chr6D.!!$R3 749
29 TraesCS7A01G133800 chr6D 142769974 142770601 627 False 1003.0 1003 95.548 1 627 1 chr6D.!!$F2 626
30 TraesCS7A01G133800 chr6D 369494714 369495314 600 True 566.0 566 83.882 1752 2351 1 chr6D.!!$R8 599
31 TraesCS7A01G133800 chr6D 369467834 369468438 604 True 523.0 523 82.545 1754 2357 1 chr6D.!!$R7 603
32 TraesCS7A01G133800 chr6D 395744065 395744679 614 True 444.0 444 80.193 1754 2356 1 chr6D.!!$R9 602
33 TraesCS7A01G133800 chr6D 292350166 292350779 613 True 442.0 442 80.161 1754 2356 1 chr6D.!!$R6 602
34 TraesCS7A01G133800 chr6D 222834509 222835075 566 False 436.0 436 81.019 1803 2356 1 chr6D.!!$F4 553
35 TraesCS7A01G133800 chr6D 275488207 275488763 556 True 279.0 279 76.502 1813 2356 1 chr6D.!!$R5 543
36 TraesCS7A01G133800 chr4A 425940962 425941564 602 True 1042.0 1042 97.844 1754 2356 1 chr4A.!!$R1 602
37 TraesCS7A01G133800 chr4A 454109949 454110553 604 True 1027.0 1027 97.355 1753 2356 1 chr4A.!!$R3 603
38 TraesCS7A01G133800 chr4A 425948946 425949548 602 True 1020.0 1020 97.181 1754 2356 1 chr4A.!!$R2 602
39 TraesCS7A01G133800 chr3A 176824505 176825107 602 True 1042.0 1042 97.844 1754 2356 1 chr3A.!!$R1 602
40 TraesCS7A01G133800 chr1A 281673460 281674065 605 False 1042.0 1042 97.690 1751 2356 1 chr1A.!!$F4 605
41 TraesCS7A01G133800 chr1A 154334099 154334708 609 False 1037.0 1037 97.377 1748 2356 1 chr1A.!!$F3 608
42 TraesCS7A01G133800 chr1A 580361016 580361618 602 False 1020.0 1020 97.181 1754 2356 1 chr1A.!!$F7 602
43 TraesCS7A01G133800 chr1A 92777899 92778504 605 False 1014.0 1014 96.865 1751 2356 1 chr1A.!!$F1 605
44 TraesCS7A01G133800 chr1A 92786159 92786761 602 False 1014.0 1014 97.020 1754 2357 1 chr1A.!!$F2 603
45 TraesCS7A01G133800 chr1A 291453753 291454355 602 True 1014.0 1014 97.015 1754 2356 1 chr1A.!!$R3 602
46 TraesCS7A01G133800 chr1A 467823309 467823913 604 False 1013.0 1013 96.860 1754 2358 1 chr1A.!!$F6 604
47 TraesCS7A01G133800 chr1A 467814211 467814815 604 False 1007.0 1007 96.694 1754 2358 1 chr1A.!!$F5 604
48 TraesCS7A01G133800 chr1A 187733745 187734347 602 True 1003.0 1003 96.683 1754 2356 1 chr1A.!!$R2 602
49 TraesCS7A01G133800 chr5A 580412047 580412648 601 True 1024.0 1024 97.347 1754 2356 1 chr5A.!!$R1 602
50 TraesCS7A01G133800 chr6A 7413870 7414472 602 True 1020.0 1020 97.185 1754 2357 1 chr6A.!!$R1 603
51 TraesCS7A01G133800 chr6A 123473768 123474370 602 False 1020.0 1020 97.181 1754 2356 1 chr6A.!!$F2 602
52 TraesCS7A01G133800 chr6A 82857026 82857628 602 False 1014.0 1014 97.015 1754 2356 1 chr6A.!!$F1 602
53 TraesCS7A01G133800 chr6A 123482839 123483441 602 False 1014.0 1014 97.020 1754 2357 1 chr6A.!!$F3 603
54 TraesCS7A01G133800 chr7D 236002507 236003134 627 True 1014.0 1014 95.866 1 627 1 chr7D.!!$R1 626
55 TraesCS7A01G133800 chrUn 334814177 334814802 625 False 593.0 593 84.236 1743 2353 1 chrUn.!!$F7 610
56 TraesCS7A01G133800 chrUn 38198277 38198824 547 True 531.0 531 84.201 1803 2356 1 chrUn.!!$R3 553
57 TraesCS7A01G133800 chrUn 60206219 60206762 543 False 468.0 468 82.278 1803 2353 1 chrUn.!!$F3 550
58 TraesCS7A01G133800 chrUn 75525319 75525932 613 True 448.0 448 80.354 1754 2356 1 chrUn.!!$R4 602
59 TraesCS7A01G133800 chrUn 362471038 362471640 602 False 435.0 435 80.098 1754 2353 1 chrUn.!!$F8 599
60 TraesCS7A01G133800 chrUn 426743844 426744446 602 False 368.0 368 78.140 1754 2353 1 chrUn.!!$F10 599
61 TraesCS7A01G133800 chrUn 222141600 222143911 2311 False 302.5 337 84.993 1753 2356 2 chrUn.!!$F11 603
62 TraesCS7A01G133800 chrUn 144679512 144681839 2327 True 294.5 326 84.520 1753 2356 2 chrUn.!!$R9 603
63 TraesCS7A01G133800 chrUn 162189147 162191473 2326 True 294.0 320 84.592 1753 2356 2 chrUn.!!$R10 603
64 TraesCS7A01G133800 chrUn 368675427 368676008 581 True 216.9 381 89.877 1754 2352 2 chrUn.!!$R11 598
65 TraesCS7A01G133800 chrUn 409495984 409496565 581 False 216.9 381 89.859 1754 2352 2 chrUn.!!$F12 598
66 TraesCS7A01G133800 chr4B 279004255 279004859 604 False 584.0 584 84.262 1754 2356 1 chr4B.!!$F1 602
67 TraesCS7A01G133800 chr4D 249836113 249836717 604 False 538.0 538 82.923 1753 2353 1 chr4D.!!$F1 600
68 TraesCS7A01G133800 chr4D 149246915 149247516 601 True 532.0 532 82.895 1753 2351 1 chr4D.!!$R3 598
69 TraesCS7A01G133800 chr4D 149239789 149240390 601 True 516.0 516 82.285 1754 2352 1 chr4D.!!$R2 598

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
981 982 0.03213 GACGCACAGACCTTGTCAGA 59.968 55.0 0.0 0.0 38.16 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2155 3898 1.295792 TCGATTCAAGGCCGTATTGC 58.704 50.0 0.0 0.0 0.0 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
128 129 5.243426 GGTCAAACCGCATAACAACATAT 57.757 39.130 0.00 0.00 0.00 1.78
157 158 4.534500 TCCCTGTGTCATTGGTATGTTACT 59.466 41.667 0.00 0.00 33.34 2.24
251 252 5.029807 TCTGTAATACATCATCCCGCAAA 57.970 39.130 0.00 0.00 0.00 3.68
262 263 6.017109 ACATCATCCCGCAAATAACTCATTAC 60.017 38.462 0.00 0.00 0.00 1.89
518 519 9.447040 CATGTATAAGTCATGAAGAAAGCAATG 57.553 33.333 0.00 0.00 43.47 2.82
579 580 5.814481 TGGGTCAAGTCAATCACATCATTA 58.186 37.500 0.00 0.00 0.00 1.90
581 582 6.891361 TGGGTCAAGTCAATCACATCATTATT 59.109 34.615 0.00 0.00 0.00 1.40
582 583 7.396907 TGGGTCAAGTCAATCACATCATTATTT 59.603 33.333 0.00 0.00 0.00 1.40
583 584 8.902806 GGGTCAAGTCAATCACATCATTATTTA 58.097 33.333 0.00 0.00 0.00 1.40
599 600 8.690203 TCATTATTTAATGATGTGATCCCGTT 57.310 30.769 8.57 0.00 45.03 4.44
600 601 9.785982 TCATTATTTAATGATGTGATCCCGTTA 57.214 29.630 8.57 0.00 45.03 3.18
604 605 8.690203 ATTTAATGATGTGATCCCGTTAATCA 57.310 30.769 0.00 0.00 0.00 2.57
605 606 8.512966 TTTAATGATGTGATCCCGTTAATCAA 57.487 30.769 0.00 0.00 35.04 2.57
606 607 8.512966 TTAATGATGTGATCCCGTTAATCAAA 57.487 30.769 0.00 0.00 35.04 2.69
607 608 7.587037 AATGATGTGATCCCGTTAATCAAAT 57.413 32.000 0.00 0.00 34.46 2.32
608 609 6.375945 TGATGTGATCCCGTTAATCAAATG 57.624 37.500 0.00 0.00 32.39 2.32
617 618 4.746115 CCCGTTAATCAAATGGCAATCATG 59.254 41.667 0.00 0.00 42.22 3.07
620 621 6.267817 CGTTAATCAAATGGCAATCATGTCT 58.732 36.000 0.00 0.00 35.99 3.41
621 622 7.416817 CGTTAATCAAATGGCAATCATGTCTA 58.583 34.615 0.00 0.00 35.99 2.59
622 623 8.077991 CGTTAATCAAATGGCAATCATGTCTAT 58.922 33.333 0.00 0.00 35.99 1.98
623 624 9.188588 GTTAATCAAATGGCAATCATGTCTATG 57.811 33.333 0.00 0.00 35.99 2.23
624 625 5.777850 TCAAATGGCAATCATGTCTATGG 57.222 39.130 0.00 0.00 35.99 2.74
851 852 9.559732 CATCACACCAAATCCTAACATCTAATA 57.440 33.333 0.00 0.00 0.00 0.98
921 922 2.029073 CGCACTCACCGAGGTTGT 59.971 61.111 0.00 0.00 33.35 3.32
981 982 0.032130 GACGCACAGACCTTGTCAGA 59.968 55.000 0.00 0.00 38.16 3.27
1026 1027 0.965866 CAGACAGCTCGACCACCCTA 60.966 60.000 0.00 0.00 0.00 3.53
1143 1144 1.074775 GGCAACCTCCACACCATCA 59.925 57.895 0.00 0.00 0.00 3.07
1149 1150 1.275666 CCTCCACACCATCACCACTA 58.724 55.000 0.00 0.00 0.00 2.74
1200 1201 0.909610 ATCTCTCCCCCGAACAGCAA 60.910 55.000 0.00 0.00 0.00 3.91
1214 1215 1.425066 ACAGCAATTCCTCCCAAGACA 59.575 47.619 0.00 0.00 0.00 3.41
1245 1246 1.269831 GGAGGATATGACGTGCAGGAC 60.270 57.143 14.38 7.74 0.00 3.85
1246 1247 1.409064 GAGGATATGACGTGCAGGACA 59.591 52.381 14.38 13.90 0.00 4.02
1247 1248 1.137086 AGGATATGACGTGCAGGACAC 59.863 52.381 14.38 1.58 46.45 3.67
1285 1286 6.385033 CAATCCAGACTGAATTTTGGACTTC 58.615 40.000 3.32 0.00 42.12 3.01
1383 1385 4.620437 CGATGCCGGCAAATCATG 57.380 55.556 36.33 15.49 0.00 3.07
1384 1386 1.729276 CGATGCCGGCAAATCATGT 59.271 52.632 36.33 16.00 0.00 3.21
1385 1387 0.317269 CGATGCCGGCAAATCATGTC 60.317 55.000 36.33 23.06 0.00 3.06
1386 1388 1.027357 GATGCCGGCAAATCATGTCT 58.973 50.000 36.33 14.18 0.00 3.41
1387 1389 2.221169 GATGCCGGCAAATCATGTCTA 58.779 47.619 36.33 4.88 0.00 2.59
1388 1390 2.346766 TGCCGGCAAATCATGTCTAT 57.653 45.000 30.74 0.00 0.00 1.98
1389 1391 1.948834 TGCCGGCAAATCATGTCTATG 59.051 47.619 30.74 0.00 35.57 2.23
1390 1392 1.267806 GCCGGCAAATCATGTCTATGG 59.732 52.381 24.80 0.00 34.97 2.74
1391 1393 1.267806 CCGGCAAATCATGTCTATGGC 59.732 52.381 0.00 0.11 34.97 4.40
1392 1394 2.224606 CGGCAAATCATGTCTATGGCT 58.775 47.619 12.37 0.00 34.97 4.75
1393 1395 3.402110 CGGCAAATCATGTCTATGGCTA 58.598 45.455 12.37 0.00 34.97 3.93
1394 1396 3.434641 CGGCAAATCATGTCTATGGCTAG 59.565 47.826 12.37 0.00 34.97 3.42
1395 1397 3.755378 GGCAAATCATGTCTATGGCTAGG 59.245 47.826 0.00 0.00 34.97 3.02
1396 1398 4.505566 GGCAAATCATGTCTATGGCTAGGA 60.506 45.833 0.00 0.00 34.97 2.94
1397 1399 5.065914 GCAAATCATGTCTATGGCTAGGAA 58.934 41.667 0.00 0.00 34.97 3.36
1398 1400 5.532406 GCAAATCATGTCTATGGCTAGGAAA 59.468 40.000 0.00 0.00 34.97 3.13
1399 1401 6.514048 GCAAATCATGTCTATGGCTAGGAAAC 60.514 42.308 0.00 0.00 34.97 2.78
1400 1402 6.506538 AATCATGTCTATGGCTAGGAAACT 57.493 37.500 0.00 0.00 38.55 2.66
1401 1403 5.957771 TCATGTCTATGGCTAGGAAACTT 57.042 39.130 0.00 0.00 37.07 2.66
1402 1404 7.618019 ATCATGTCTATGGCTAGGAAACTTA 57.382 36.000 0.00 0.00 37.07 2.24
1403 1405 7.432148 TCATGTCTATGGCTAGGAAACTTAA 57.568 36.000 0.00 0.00 37.07 1.85
1404 1406 8.034313 TCATGTCTATGGCTAGGAAACTTAAT 57.966 34.615 0.00 0.00 37.07 1.40
1405 1407 8.150945 TCATGTCTATGGCTAGGAAACTTAATC 58.849 37.037 0.00 0.00 37.07 1.75
1406 1408 7.432148 TGTCTATGGCTAGGAAACTTAATCA 57.568 36.000 0.00 0.00 43.67 2.57
1407 1409 8.034313 TGTCTATGGCTAGGAAACTTAATCAT 57.966 34.615 0.00 0.00 43.67 2.45
1408 1410 8.150945 TGTCTATGGCTAGGAAACTTAATCATC 58.849 37.037 0.00 0.00 43.67 2.92
1409 1411 8.371699 GTCTATGGCTAGGAAACTTAATCATCT 58.628 37.037 0.00 0.00 43.67 2.90
1410 1412 8.938883 TCTATGGCTAGGAAACTTAATCATCTT 58.061 33.333 0.00 0.00 43.67 2.40
1411 1413 9.566432 CTATGGCTAGGAAACTTAATCATCTTT 57.434 33.333 0.00 0.00 43.67 2.52
1412 1414 7.630242 TGGCTAGGAAACTTAATCATCTTTG 57.370 36.000 0.00 0.00 43.67 2.77
1413 1415 7.402054 TGGCTAGGAAACTTAATCATCTTTGA 58.598 34.615 0.00 0.00 43.67 2.69
1414 1416 8.055181 TGGCTAGGAAACTTAATCATCTTTGAT 58.945 33.333 0.00 0.00 42.63 2.57
1415 1417 8.907885 GGCTAGGAAACTTAATCATCTTTGATT 58.092 33.333 6.47 6.47 46.76 2.57
1416 1418 9.943163 GCTAGGAAACTTAATCATCTTTGATTC 57.057 33.333 4.58 0.00 44.35 2.52
1426 1428 6.841443 ATCATCTTTGATTCAACGAGCTAG 57.159 37.500 10.80 0.00 39.64 3.42
1427 1429 5.724328 TCATCTTTGATTCAACGAGCTAGT 58.276 37.500 10.80 0.00 0.00 2.57
1428 1430 5.807520 TCATCTTTGATTCAACGAGCTAGTC 59.192 40.000 10.80 0.00 0.00 2.59
1429 1431 5.134202 TCTTTGATTCAACGAGCTAGTCA 57.866 39.130 0.00 0.00 0.00 3.41
1430 1432 5.538118 TCTTTGATTCAACGAGCTAGTCAA 58.462 37.500 0.00 0.00 0.00 3.18
1431 1433 5.635280 TCTTTGATTCAACGAGCTAGTCAAG 59.365 40.000 0.00 0.00 0.00 3.02
1432 1434 4.521130 TGATTCAACGAGCTAGTCAAGT 57.479 40.909 0.00 0.00 0.00 3.16
1433 1435 5.638596 TGATTCAACGAGCTAGTCAAGTA 57.361 39.130 0.00 0.00 0.00 2.24
1434 1436 5.641709 TGATTCAACGAGCTAGTCAAGTAG 58.358 41.667 0.00 0.00 0.00 2.57
1435 1437 5.414765 TGATTCAACGAGCTAGTCAAGTAGA 59.585 40.000 0.00 0.00 0.00 2.59
1436 1438 4.948608 TCAACGAGCTAGTCAAGTAGAG 57.051 45.455 0.00 0.00 0.00 2.43
1437 1439 3.690139 TCAACGAGCTAGTCAAGTAGAGG 59.310 47.826 0.00 0.00 0.00 3.69
1438 1440 2.018515 ACGAGCTAGTCAAGTAGAGGC 58.981 52.381 0.00 0.00 0.00 4.70
1439 1441 2.017782 CGAGCTAGTCAAGTAGAGGCA 58.982 52.381 0.00 0.00 0.00 4.75
1440 1442 2.621055 CGAGCTAGTCAAGTAGAGGCAT 59.379 50.000 0.00 0.00 0.00 4.40
1441 1443 3.815962 CGAGCTAGTCAAGTAGAGGCATA 59.184 47.826 0.00 0.00 0.00 3.14
1442 1444 4.319911 CGAGCTAGTCAAGTAGAGGCATAC 60.320 50.000 0.00 0.00 0.00 2.39
1443 1445 4.798882 AGCTAGTCAAGTAGAGGCATACT 58.201 43.478 0.00 0.00 37.61 2.12
1444 1446 5.942961 AGCTAGTCAAGTAGAGGCATACTA 58.057 41.667 3.23 0.00 34.90 1.82
1445 1447 6.001460 AGCTAGTCAAGTAGAGGCATACTAG 58.999 44.000 0.00 0.00 38.50 2.57
1446 1448 5.766174 GCTAGTCAAGTAGAGGCATACTAGT 59.234 44.000 0.00 0.00 38.02 2.57
1447 1449 6.293735 GCTAGTCAAGTAGAGGCATACTAGTG 60.294 46.154 5.39 0.00 38.02 2.74
1448 1450 5.756918 AGTCAAGTAGAGGCATACTAGTGA 58.243 41.667 5.39 2.59 34.90 3.41
1449 1451 5.591067 AGTCAAGTAGAGGCATACTAGTGAC 59.409 44.000 17.97 17.97 40.57 3.67
1450 1452 5.357314 GTCAAGTAGAGGCATACTAGTGACA 59.643 44.000 19.41 0.00 40.28 3.58
1451 1453 5.357314 TCAAGTAGAGGCATACTAGTGACAC 59.643 44.000 5.39 0.00 34.90 3.67
1452 1454 5.118729 AGTAGAGGCATACTAGTGACACT 57.881 43.478 13.68 13.68 34.21 3.55
1453 1455 5.127491 AGTAGAGGCATACTAGTGACACTC 58.873 45.833 12.39 8.31 34.21 3.51
1454 1456 4.243793 AGAGGCATACTAGTGACACTCT 57.756 45.455 12.39 10.40 0.00 3.24
1455 1457 3.951037 AGAGGCATACTAGTGACACTCTG 59.049 47.826 12.39 9.04 33.23 3.35
1456 1458 3.697045 GAGGCATACTAGTGACACTCTGT 59.303 47.826 12.39 14.35 0.00 3.41
1457 1459 4.090090 AGGCATACTAGTGACACTCTGTT 58.910 43.478 12.39 0.00 0.00 3.16
1458 1460 4.528596 AGGCATACTAGTGACACTCTGTTT 59.471 41.667 12.39 5.23 0.00 2.83
1459 1461 4.627467 GGCATACTAGTGACACTCTGTTTG 59.373 45.833 12.39 16.63 0.00 2.93
1460 1462 5.230942 GCATACTAGTGACACTCTGTTTGT 58.769 41.667 12.39 5.61 0.00 2.83
1461 1463 5.346281 GCATACTAGTGACACTCTGTTTGTC 59.654 44.000 12.39 9.81 43.22 3.18
1462 1464 6.682746 CATACTAGTGACACTCTGTTTGTCT 58.317 40.000 12.39 0.00 43.30 3.41
1463 1465 7.575155 GCATACTAGTGACACTCTGTTTGTCTA 60.575 40.741 12.39 0.00 43.30 2.59
1464 1466 6.902771 ACTAGTGACACTCTGTTTGTCTAT 57.097 37.500 12.39 0.00 43.30 1.98
1465 1467 6.682746 ACTAGTGACACTCTGTTTGTCTATG 58.317 40.000 12.39 0.00 43.30 2.23
1466 1468 5.537300 AGTGACACTCTGTTTGTCTATGT 57.463 39.130 1.07 0.00 43.30 2.29
1467 1469 6.650427 AGTGACACTCTGTTTGTCTATGTA 57.350 37.500 1.07 0.00 43.30 2.29
1468 1470 7.233389 AGTGACACTCTGTTTGTCTATGTAT 57.767 36.000 1.07 0.00 43.30 2.29
1469 1471 7.671302 AGTGACACTCTGTTTGTCTATGTATT 58.329 34.615 1.07 0.00 43.30 1.89
1470 1472 7.815068 AGTGACACTCTGTTTGTCTATGTATTC 59.185 37.037 1.07 0.00 43.30 1.75
1471 1473 7.598869 GTGACACTCTGTTTGTCTATGTATTCA 59.401 37.037 0.00 0.00 43.30 2.57
1472 1474 7.598869 TGACACTCTGTTTGTCTATGTATTCAC 59.401 37.037 11.01 0.00 43.30 3.18
1473 1475 7.441836 ACACTCTGTTTGTCTATGTATTCACA 58.558 34.615 0.00 0.00 39.52 3.58
1474 1476 7.385205 ACACTCTGTTTGTCTATGTATTCACAC 59.615 37.037 0.00 0.00 37.54 3.82
1475 1477 7.384932 CACTCTGTTTGTCTATGTATTCACACA 59.615 37.037 0.00 0.00 37.54 3.72
1476 1478 8.097038 ACTCTGTTTGTCTATGTATTCACACAT 58.903 33.333 0.00 0.00 41.88 3.21
1477 1479 8.255394 TCTGTTTGTCTATGTATTCACACATG 57.745 34.615 0.00 0.00 39.46 3.21
1478 1480 7.877612 TCTGTTTGTCTATGTATTCACACATGT 59.122 33.333 0.00 0.00 39.46 3.21
1479 1481 9.150348 CTGTTTGTCTATGTATTCACACATGTA 57.850 33.333 0.00 0.00 39.46 2.29
1480 1482 8.931775 TGTTTGTCTATGTATTCACACATGTAC 58.068 33.333 0.00 0.00 39.46 2.90
1481 1483 9.151471 GTTTGTCTATGTATTCACACATGTACT 57.849 33.333 0.00 0.00 39.46 2.73
1484 1486 8.630037 TGTCTATGTATTCACACATGTACTAGG 58.370 37.037 0.00 0.00 39.46 3.02
1485 1487 8.630917 GTCTATGTATTCACACATGTACTAGGT 58.369 37.037 0.00 0.00 39.46 3.08
1486 1488 9.197306 TCTATGTATTCACACATGTACTAGGTT 57.803 33.333 0.00 0.00 39.46 3.50
1487 1489 9.817809 CTATGTATTCACACATGTACTAGGTTT 57.182 33.333 0.00 0.00 39.46 3.27
1488 1490 8.718102 ATGTATTCACACATGTACTAGGTTTC 57.282 34.615 0.00 0.00 37.74 2.78
1489 1491 7.101054 TGTATTCACACATGTACTAGGTTTCC 58.899 38.462 0.00 0.00 0.00 3.13
1490 1492 4.182693 TCACACATGTACTAGGTTTCCG 57.817 45.455 0.00 0.00 0.00 4.30
1491 1493 3.827876 TCACACATGTACTAGGTTTCCGA 59.172 43.478 0.00 0.00 0.00 4.55
1492 1494 4.464951 TCACACATGTACTAGGTTTCCGAT 59.535 41.667 0.00 0.00 0.00 4.18
1493 1495 5.046878 TCACACATGTACTAGGTTTCCGATT 60.047 40.000 0.00 0.00 0.00 3.34
1494 1496 6.153170 TCACACATGTACTAGGTTTCCGATTA 59.847 38.462 0.00 0.00 0.00 1.75
1495 1497 6.814644 CACACATGTACTAGGTTTCCGATTAA 59.185 38.462 0.00 0.00 0.00 1.40
1496 1498 7.494625 CACACATGTACTAGGTTTCCGATTAAT 59.505 37.037 0.00 0.00 0.00 1.40
1497 1499 8.698210 ACACATGTACTAGGTTTCCGATTAATA 58.302 33.333 0.00 0.00 0.00 0.98
1498 1500 8.975439 CACATGTACTAGGTTTCCGATTAATAC 58.025 37.037 0.00 0.00 0.00 1.89
1499 1501 8.698210 ACATGTACTAGGTTTCCGATTAATACA 58.302 33.333 0.00 0.00 0.00 2.29
1500 1502 9.537192 CATGTACTAGGTTTCCGATTAATACAA 57.463 33.333 0.00 0.00 0.00 2.41
1507 1509 8.379457 AGGTTTCCGATTAATACAATTCTAGC 57.621 34.615 0.00 0.00 0.00 3.42
1508 1510 7.990886 AGGTTTCCGATTAATACAATTCTAGCA 59.009 33.333 0.00 0.00 0.00 3.49
1509 1511 8.784043 GGTTTCCGATTAATACAATTCTAGCAT 58.216 33.333 0.00 0.00 0.00 3.79
1510 1512 9.599322 GTTTCCGATTAATACAATTCTAGCATG 57.401 33.333 0.00 0.00 0.00 4.06
1511 1513 9.554395 TTTCCGATTAATACAATTCTAGCATGA 57.446 29.630 0.00 0.00 0.00 3.07
1512 1514 9.554395 TTCCGATTAATACAATTCTAGCATGAA 57.446 29.630 0.00 0.00 0.00 2.57
1513 1515 9.725019 TCCGATTAATACAATTCTAGCATGAAT 57.275 29.630 0.00 0.00 38.19 2.57
1572 1574 8.637196 AATAACTTTATTATTGCCTCTAGGGC 57.363 34.615 13.60 13.60 44.71 5.19
1584 1586 4.982241 CCTCTAGGGCATATTTCCTTCA 57.018 45.455 0.00 0.00 34.75 3.02
1585 1587 5.310409 CCTCTAGGGCATATTTCCTTCAA 57.690 43.478 0.00 0.00 34.75 2.69
1586 1588 5.694995 CCTCTAGGGCATATTTCCTTCAAA 58.305 41.667 0.00 0.00 34.75 2.69
1587 1589 6.310149 CCTCTAGGGCATATTTCCTTCAAAT 58.690 40.000 0.00 0.00 38.35 2.32
1588 1590 6.432472 CCTCTAGGGCATATTTCCTTCAAATC 59.568 42.308 0.00 0.00 36.09 2.17
1589 1591 7.154191 TCTAGGGCATATTTCCTTCAAATCT 57.846 36.000 0.00 0.00 36.09 2.40
1590 1592 7.000472 TCTAGGGCATATTTCCTTCAAATCTG 59.000 38.462 0.00 0.00 36.09 2.90
1591 1593 4.897670 AGGGCATATTTCCTTCAAATCTGG 59.102 41.667 0.00 0.00 36.09 3.86
1592 1594 4.651045 GGGCATATTTCCTTCAAATCTGGT 59.349 41.667 0.00 0.00 36.09 4.00
1593 1595 5.129320 GGGCATATTTCCTTCAAATCTGGTT 59.871 40.000 0.00 0.00 36.09 3.67
1594 1596 6.352137 GGGCATATTTCCTTCAAATCTGGTTT 60.352 38.462 0.00 0.00 36.09 3.27
1595 1597 7.105588 GGCATATTTCCTTCAAATCTGGTTTT 58.894 34.615 0.00 0.00 36.09 2.43
1596 1598 7.278646 GGCATATTTCCTTCAAATCTGGTTTTC 59.721 37.037 0.00 0.00 36.09 2.29
1597 1599 7.009540 GCATATTTCCTTCAAATCTGGTTTTCG 59.990 37.037 0.00 0.00 36.09 3.46
1598 1600 3.915437 TCCTTCAAATCTGGTTTTCGC 57.085 42.857 0.00 0.00 0.00 4.70
1599 1601 3.486383 TCCTTCAAATCTGGTTTTCGCT 58.514 40.909 0.00 0.00 0.00 4.93
1600 1602 3.502211 TCCTTCAAATCTGGTTTTCGCTC 59.498 43.478 0.00 0.00 0.00 5.03
1601 1603 3.253188 CCTTCAAATCTGGTTTTCGCTCA 59.747 43.478 0.00 0.00 0.00 4.26
1602 1604 4.470462 CTTCAAATCTGGTTTTCGCTCAG 58.530 43.478 0.00 0.00 0.00 3.35
1603 1605 3.476552 TCAAATCTGGTTTTCGCTCAGT 58.523 40.909 0.00 0.00 0.00 3.41
1604 1606 3.882888 TCAAATCTGGTTTTCGCTCAGTT 59.117 39.130 0.00 0.00 0.00 3.16
1605 1607 4.338118 TCAAATCTGGTTTTCGCTCAGTTT 59.662 37.500 0.00 0.00 0.00 2.66
1606 1608 4.918810 AATCTGGTTTTCGCTCAGTTTT 57.081 36.364 0.00 0.00 0.00 2.43
1607 1609 3.963383 TCTGGTTTTCGCTCAGTTTTC 57.037 42.857 0.00 0.00 0.00 2.29
1608 1610 2.616842 TCTGGTTTTCGCTCAGTTTTCC 59.383 45.455 0.00 0.00 0.00 3.13
1609 1611 1.332375 TGGTTTTCGCTCAGTTTTCCG 59.668 47.619 0.00 0.00 0.00 4.30
1610 1612 1.332686 GGTTTTCGCTCAGTTTTCCGT 59.667 47.619 0.00 0.00 0.00 4.69
1611 1613 2.545106 GGTTTTCGCTCAGTTTTCCGTA 59.455 45.455 0.00 0.00 0.00 4.02
1612 1614 3.002553 GGTTTTCGCTCAGTTTTCCGTAA 59.997 43.478 0.00 0.00 0.00 3.18
1613 1615 4.319984 GGTTTTCGCTCAGTTTTCCGTAAT 60.320 41.667 0.00 0.00 0.00 1.89
1614 1616 5.209977 GTTTTCGCTCAGTTTTCCGTAATT 58.790 37.500 0.00 0.00 0.00 1.40
1615 1617 6.365050 GTTTTCGCTCAGTTTTCCGTAATTA 58.635 36.000 0.00 0.00 0.00 1.40
1616 1618 6.542574 TTTCGCTCAGTTTTCCGTAATTAA 57.457 33.333 0.00 0.00 0.00 1.40
1617 1619 5.520022 TCGCTCAGTTTTCCGTAATTAAC 57.480 39.130 0.00 0.00 0.00 2.01
1618 1620 4.389687 TCGCTCAGTTTTCCGTAATTAACC 59.610 41.667 0.00 0.00 0.00 2.85
1619 1621 4.644954 GCTCAGTTTTCCGTAATTAACCG 58.355 43.478 0.00 0.00 0.00 4.44
1620 1622 4.436451 GCTCAGTTTTCCGTAATTAACCGG 60.436 45.833 0.00 0.00 45.55 5.28
1621 1623 4.002316 TCAGTTTTCCGTAATTAACCGGG 58.998 43.478 6.32 0.00 44.32 5.73
1622 1624 2.749076 AGTTTTCCGTAATTAACCGGGC 59.251 45.455 6.32 4.03 44.32 6.13
1623 1625 2.486472 TTTCCGTAATTAACCGGGCA 57.514 45.000 6.32 0.00 44.32 5.36
1624 1626 2.486472 TTCCGTAATTAACCGGGCAA 57.514 45.000 6.32 0.00 44.32 4.52
1625 1627 1.736612 TCCGTAATTAACCGGGCAAC 58.263 50.000 6.32 0.00 44.32 4.17
1626 1628 1.278699 TCCGTAATTAACCGGGCAACT 59.721 47.619 6.32 0.00 44.32 3.16
1627 1629 1.667212 CCGTAATTAACCGGGCAACTC 59.333 52.381 6.32 0.00 40.54 3.01
1628 1630 2.348660 CGTAATTAACCGGGCAACTCA 58.651 47.619 6.32 0.00 0.00 3.41
1629 1631 2.940410 CGTAATTAACCGGGCAACTCAT 59.060 45.455 6.32 0.00 0.00 2.90
1630 1632 3.375922 CGTAATTAACCGGGCAACTCATT 59.624 43.478 6.32 0.00 0.00 2.57
1631 1633 4.142556 CGTAATTAACCGGGCAACTCATTT 60.143 41.667 6.32 0.00 0.00 2.32
1632 1634 4.450082 AATTAACCGGGCAACTCATTTC 57.550 40.909 6.32 0.00 0.00 2.17
1633 1635 2.871096 TAACCGGGCAACTCATTTCT 57.129 45.000 6.32 0.00 0.00 2.52
1634 1636 1.995376 AACCGGGCAACTCATTTCTT 58.005 45.000 6.32 0.00 0.00 2.52
1635 1637 1.534729 ACCGGGCAACTCATTTCTTC 58.465 50.000 6.32 0.00 0.00 2.87
1636 1638 1.073923 ACCGGGCAACTCATTTCTTCT 59.926 47.619 6.32 0.00 0.00 2.85
1637 1639 2.162681 CCGGGCAACTCATTTCTTCTT 58.837 47.619 0.00 0.00 0.00 2.52
1638 1640 3.244770 ACCGGGCAACTCATTTCTTCTTA 60.245 43.478 6.32 0.00 0.00 2.10
1639 1641 3.756434 CCGGGCAACTCATTTCTTCTTAA 59.244 43.478 0.00 0.00 0.00 1.85
1640 1642 4.399303 CCGGGCAACTCATTTCTTCTTAAT 59.601 41.667 0.00 0.00 0.00 1.40
1641 1643 5.335127 CGGGCAACTCATTTCTTCTTAATG 58.665 41.667 0.00 0.00 34.94 1.90
1642 1644 5.123820 CGGGCAACTCATTTCTTCTTAATGA 59.876 40.000 0.00 0.00 39.12 2.57
1643 1645 6.349280 CGGGCAACTCATTTCTTCTTAATGAA 60.349 38.462 0.00 0.00 40.42 2.57
1644 1646 7.550712 GGGCAACTCATTTCTTCTTAATGAAT 58.449 34.615 0.00 0.00 40.42 2.57
1645 1647 7.490402 GGGCAACTCATTTCTTCTTAATGAATG 59.510 37.037 0.00 0.00 40.42 2.67
1646 1648 8.031277 GGCAACTCATTTCTTCTTAATGAATGT 58.969 33.333 0.00 0.00 40.42 2.71
1659 1661 9.958180 TTCTTAATGAATGTAGGAATCTTGTCA 57.042 29.630 0.00 0.00 0.00 3.58
1664 1666 8.812513 ATGAATGTAGGAATCTTGTCATTTCA 57.187 30.769 0.00 0.00 0.00 2.69
1665 1667 8.634335 TGAATGTAGGAATCTTGTCATTTCAA 57.366 30.769 0.00 0.00 0.00 2.69
1666 1668 9.076781 TGAATGTAGGAATCTTGTCATTTCAAA 57.923 29.630 0.00 0.00 0.00 2.69
1667 1669 9.912634 GAATGTAGGAATCTTGTCATTTCAAAA 57.087 29.630 0.00 0.00 0.00 2.44
1687 1689 4.402616 AAAAATGATGGGAGGGAGAACA 57.597 40.909 0.00 0.00 0.00 3.18
1688 1690 4.614967 AAAATGATGGGAGGGAGAACAT 57.385 40.909 0.00 0.00 0.00 2.71
1689 1691 3.589951 AATGATGGGAGGGAGAACATG 57.410 47.619 0.00 0.00 0.00 3.21
1690 1692 2.268796 TGATGGGAGGGAGAACATGA 57.731 50.000 0.00 0.00 0.00 3.07
1691 1693 2.780414 TGATGGGAGGGAGAACATGAT 58.220 47.619 0.00 0.00 0.00 2.45
1692 1694 3.940335 TGATGGGAGGGAGAACATGATA 58.060 45.455 0.00 0.00 0.00 2.15
1693 1695 4.506354 TGATGGGAGGGAGAACATGATAT 58.494 43.478 0.00 0.00 0.00 1.63
1694 1696 4.915809 TGATGGGAGGGAGAACATGATATT 59.084 41.667 0.00 0.00 0.00 1.28
1695 1697 4.712051 TGGGAGGGAGAACATGATATTG 57.288 45.455 0.00 0.00 0.00 1.90
1696 1698 3.395607 TGGGAGGGAGAACATGATATTGG 59.604 47.826 0.00 0.00 0.00 3.16
1697 1699 3.245052 GGGAGGGAGAACATGATATTGGG 60.245 52.174 0.00 0.00 0.00 4.12
1698 1700 3.652869 GGAGGGAGAACATGATATTGGGA 59.347 47.826 0.00 0.00 0.00 4.37
1699 1701 4.263243 GGAGGGAGAACATGATATTGGGAG 60.263 50.000 0.00 0.00 0.00 4.30
1700 1702 3.654806 AGGGAGAACATGATATTGGGAGG 59.345 47.826 0.00 0.00 0.00 4.30
1701 1703 3.652869 GGGAGAACATGATATTGGGAGGA 59.347 47.826 0.00 0.00 0.00 3.71
1702 1704 4.290722 GGGAGAACATGATATTGGGAGGAT 59.709 45.833 0.00 0.00 0.00 3.24
1703 1705 5.251764 GGAGAACATGATATTGGGAGGATG 58.748 45.833 0.00 0.00 0.00 3.51
1704 1706 5.222007 GGAGAACATGATATTGGGAGGATGT 60.222 44.000 0.00 0.00 0.00 3.06
1705 1707 6.271585 AGAACATGATATTGGGAGGATGTT 57.728 37.500 0.00 0.00 36.88 2.71
1706 1708 6.302269 AGAACATGATATTGGGAGGATGTTC 58.698 40.000 12.58 12.58 45.14 3.18
1707 1709 5.919348 ACATGATATTGGGAGGATGTTCT 57.081 39.130 0.00 0.00 0.00 3.01
1708 1710 7.392766 AACATGATATTGGGAGGATGTTCTA 57.607 36.000 0.00 0.00 30.11 2.10
1709 1711 7.013823 ACATGATATTGGGAGGATGTTCTAG 57.986 40.000 0.00 0.00 0.00 2.43
1710 1712 6.789457 ACATGATATTGGGAGGATGTTCTAGA 59.211 38.462 0.00 0.00 0.00 2.43
1711 1713 7.293299 ACATGATATTGGGAGGATGTTCTAGAA 59.707 37.037 0.00 0.00 0.00 2.10
1712 1714 7.878621 TGATATTGGGAGGATGTTCTAGAAT 57.121 36.000 8.75 0.00 0.00 2.40
1713 1715 8.280258 TGATATTGGGAGGATGTTCTAGAATT 57.720 34.615 8.75 0.00 0.00 2.17
1714 1716 8.159447 TGATATTGGGAGGATGTTCTAGAATTG 58.841 37.037 8.75 0.00 0.00 2.32
1715 1717 5.779241 TTGGGAGGATGTTCTAGAATTGT 57.221 39.130 8.75 0.00 0.00 2.71
1716 1718 5.779241 TGGGAGGATGTTCTAGAATTGTT 57.221 39.130 8.75 0.00 0.00 2.83
1717 1719 5.745227 TGGGAGGATGTTCTAGAATTGTTC 58.255 41.667 8.75 3.79 0.00 3.18
1718 1720 5.488919 TGGGAGGATGTTCTAGAATTGTTCT 59.511 40.000 8.75 2.04 43.72 3.01
1719 1721 6.012508 TGGGAGGATGTTCTAGAATTGTTCTT 60.013 38.462 8.75 0.45 41.14 2.52
1720 1722 6.317391 GGGAGGATGTTCTAGAATTGTTCTTG 59.683 42.308 8.75 0.00 41.14 3.02
1721 1723 6.317391 GGAGGATGTTCTAGAATTGTTCTTGG 59.683 42.308 8.75 0.00 41.14 3.61
1722 1724 5.649831 AGGATGTTCTAGAATTGTTCTTGGC 59.350 40.000 8.75 0.00 41.14 4.52
1723 1725 5.447818 GGATGTTCTAGAATTGTTCTTGGCG 60.448 44.000 8.75 0.00 41.14 5.69
1724 1726 4.385825 TGTTCTAGAATTGTTCTTGGCGT 58.614 39.130 8.75 0.00 41.14 5.68
1725 1727 4.213270 TGTTCTAGAATTGTTCTTGGCGTG 59.787 41.667 8.75 0.00 41.14 5.34
1726 1728 2.742053 TCTAGAATTGTTCTTGGCGTGC 59.258 45.455 0.00 0.00 41.14 5.34
1727 1729 1.609208 AGAATTGTTCTTGGCGTGCT 58.391 45.000 0.00 0.00 36.36 4.40
1728 1730 1.956477 AGAATTGTTCTTGGCGTGCTT 59.044 42.857 0.00 0.00 36.36 3.91
1729 1731 2.053627 GAATTGTTCTTGGCGTGCTTG 58.946 47.619 0.00 0.00 0.00 4.01
1730 1732 0.318955 ATTGTTCTTGGCGTGCTTGC 60.319 50.000 0.00 0.00 0.00 4.01
1741 1743 3.639759 GCGTGCTTGCCAATTTAATTC 57.360 42.857 0.00 0.00 0.00 2.17
1742 1744 3.253230 GCGTGCTTGCCAATTTAATTCT 58.747 40.909 0.00 0.00 0.00 2.40
1743 1745 4.420168 GCGTGCTTGCCAATTTAATTCTA 58.580 39.130 0.00 0.00 0.00 2.10
1744 1746 4.265320 GCGTGCTTGCCAATTTAATTCTAC 59.735 41.667 0.00 0.00 0.00 2.59
1745 1747 4.495472 CGTGCTTGCCAATTTAATTCTACG 59.505 41.667 0.00 0.00 0.00 3.51
1746 1748 5.399013 GTGCTTGCCAATTTAATTCTACGT 58.601 37.500 0.00 0.00 0.00 3.57
1747 1749 6.548171 GTGCTTGCCAATTTAATTCTACGTA 58.452 36.000 0.00 0.00 0.00 3.57
1748 1750 6.468000 GTGCTTGCCAATTTAATTCTACGTAC 59.532 38.462 0.00 0.00 0.00 3.67
1749 1751 6.149640 TGCTTGCCAATTTAATTCTACGTACA 59.850 34.615 0.00 0.00 0.00 2.90
1956 1966 2.607038 GGTTTTTGGCCAATCACGTCTC 60.607 50.000 21.26 2.69 0.00 3.36
1969 1979 2.632996 TCACGTCTCCAAGATGACCTTT 59.367 45.455 3.28 0.00 34.89 3.11
1974 1984 3.944015 GTCTCCAAGATGACCTTTGATGG 59.056 47.826 0.00 0.00 31.42 3.51
2289 4035 2.880890 ACAAATCAAGATCGGGCTATGC 59.119 45.455 0.00 0.00 0.00 3.14
2358 4109 2.896168 ACGGTCGAGTGAAAGTTTTCA 58.104 42.857 3.28 3.28 44.31 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
128 129 2.305928 CCAATGACACAGGGAACAACA 58.694 47.619 0.00 0.00 0.00 3.33
139 140 5.124936 GGGGAAAGTAACATACCAATGACAC 59.875 44.000 0.00 0.00 36.54 3.67
157 158 1.066605 GACGATCGAATCTCGGGGAAA 59.933 52.381 24.34 0.00 40.88 3.13
251 252 8.279970 TGCAAGCAATGTAAGTAATGAGTTAT 57.720 30.769 0.00 0.00 0.00 1.89
518 519 5.560148 CACTTGATCGTTTAGTATGTTGCC 58.440 41.667 0.00 0.00 0.00 4.52
579 580 8.690203 TGATTAACGGGATCACATCATTAAAT 57.310 30.769 0.00 0.00 0.00 1.40
581 582 8.512966 TTTGATTAACGGGATCACATCATTAA 57.487 30.769 0.00 0.00 33.51 1.40
582 583 8.567104 CATTTGATTAACGGGATCACATCATTA 58.433 33.333 0.00 0.00 33.51 1.90
583 584 7.428020 CATTTGATTAACGGGATCACATCATT 58.572 34.615 0.00 0.00 33.51 2.57
584 585 6.016024 CCATTTGATTAACGGGATCACATCAT 60.016 38.462 0.00 0.00 33.51 2.45
585 586 5.299028 CCATTTGATTAACGGGATCACATCA 59.701 40.000 0.00 0.00 33.51 3.07
586 587 5.762045 CCATTTGATTAACGGGATCACATC 58.238 41.667 0.00 0.00 33.51 3.06
587 588 4.037923 GCCATTTGATTAACGGGATCACAT 59.962 41.667 0.00 0.00 33.51 3.21
588 589 3.380004 GCCATTTGATTAACGGGATCACA 59.620 43.478 0.00 0.00 33.51 3.58
589 590 3.380004 TGCCATTTGATTAACGGGATCAC 59.620 43.478 0.00 0.00 33.51 3.06
590 591 3.625853 TGCCATTTGATTAACGGGATCA 58.374 40.909 0.00 0.00 0.00 2.92
591 592 4.647424 TTGCCATTTGATTAACGGGATC 57.353 40.909 0.00 0.00 0.00 3.36
592 593 4.648762 TGATTGCCATTTGATTAACGGGAT 59.351 37.500 0.00 0.00 0.00 3.85
593 594 4.019858 TGATTGCCATTTGATTAACGGGA 58.980 39.130 0.00 0.00 0.00 5.14
594 595 4.383850 TGATTGCCATTTGATTAACGGG 57.616 40.909 0.00 0.00 0.00 5.28
595 596 5.350633 ACATGATTGCCATTTGATTAACGG 58.649 37.500 0.00 0.00 31.94 4.44
596 597 6.267817 AGACATGATTGCCATTTGATTAACG 58.732 36.000 0.00 0.00 31.94 3.18
597 598 9.188588 CATAGACATGATTGCCATTTGATTAAC 57.811 33.333 0.00 0.00 33.67 2.01
598 599 8.361889 CCATAGACATGATTGCCATTTGATTAA 58.638 33.333 0.00 0.00 33.67 1.40
599 600 7.524202 GCCATAGACATGATTGCCATTTGATTA 60.524 37.037 0.00 0.00 33.67 1.75
600 601 6.740401 GCCATAGACATGATTGCCATTTGATT 60.740 38.462 0.00 0.00 33.67 2.57
601 602 5.279306 GCCATAGACATGATTGCCATTTGAT 60.279 40.000 0.00 0.00 33.67 2.57
602 603 4.038282 GCCATAGACATGATTGCCATTTGA 59.962 41.667 0.00 0.00 33.67 2.69
603 604 4.038763 AGCCATAGACATGATTGCCATTTG 59.961 41.667 0.00 0.00 33.67 2.32
604 605 4.220724 AGCCATAGACATGATTGCCATTT 58.779 39.130 0.00 0.00 33.67 2.32
605 606 3.840991 AGCCATAGACATGATTGCCATT 58.159 40.909 0.00 0.00 33.67 3.16
606 607 3.520691 AGCCATAGACATGATTGCCAT 57.479 42.857 0.00 0.00 33.67 4.40
607 608 3.301794 AAGCCATAGACATGATTGCCA 57.698 42.857 0.00 0.00 33.67 4.92
608 609 4.660789 AAAAGCCATAGACATGATTGCC 57.339 40.909 0.00 0.00 33.67 4.52
650 651 4.804420 AGATGCAGAGGCCGGGGA 62.804 66.667 2.18 0.00 40.13 4.81
761 762 1.108132 GGGGTAGGAGTAGCGACAGG 61.108 65.000 0.00 0.00 0.00 4.00
871 872 0.974010 TGACCCAGTCCCGGTATGTC 60.974 60.000 0.00 0.00 32.27 3.06
918 919 2.151202 GATGGAAGAAGGCAACGACAA 58.849 47.619 0.00 0.00 46.39 3.18
921 922 0.606096 TCGATGGAAGAAGGCAACGA 59.394 50.000 0.00 0.00 46.39 3.85
924 925 1.559219 TGGATCGATGGAAGAAGGCAA 59.441 47.619 0.54 0.00 0.00 4.52
1075 1076 4.338539 GACGACGAGTGGTGGCGT 62.339 66.667 0.00 0.00 44.33 5.68
1100 1101 0.458889 GTGCGGCGTTGTATCTACCA 60.459 55.000 9.37 0.00 0.00 3.25
1143 1144 1.682394 CCGAGTAGCTCCAGTAGTGGT 60.682 57.143 16.36 0.00 45.28 4.16
1149 1150 1.755008 GGCTCCGAGTAGCTCCAGT 60.755 63.158 0.00 0.00 42.37 4.00
1200 1201 1.078143 GCGCTGTCTTGGGAGGAAT 60.078 57.895 0.00 0.00 0.00 3.01
1285 1286 3.823330 CGAACCCCTCTCGGACGG 61.823 72.222 0.00 0.00 32.62 4.79
1330 1332 1.657804 CTGTTACCCTTCCTGGAGGT 58.342 55.000 11.87 11.87 38.35 3.85
1375 1377 6.769822 AGTTTCCTAGCCATAGACATGATTTG 59.230 38.462 0.00 0.00 33.67 2.32
1376 1378 6.904626 AGTTTCCTAGCCATAGACATGATTT 58.095 36.000 0.00 0.00 33.67 2.17
1377 1379 6.506538 AGTTTCCTAGCCATAGACATGATT 57.493 37.500 0.00 0.00 33.67 2.57
1378 1380 6.506538 AAGTTTCCTAGCCATAGACATGAT 57.493 37.500 0.00 0.00 33.67 2.45
1379 1381 5.957771 AAGTTTCCTAGCCATAGACATGA 57.042 39.130 0.00 0.00 33.67 3.07
1380 1382 7.933577 TGATTAAGTTTCCTAGCCATAGACATG 59.066 37.037 0.00 0.00 0.00 3.21
1381 1383 8.034313 TGATTAAGTTTCCTAGCCATAGACAT 57.966 34.615 0.00 0.00 0.00 3.06
1382 1384 7.432148 TGATTAAGTTTCCTAGCCATAGACA 57.568 36.000 0.00 0.00 0.00 3.41
1383 1385 8.371699 AGATGATTAAGTTTCCTAGCCATAGAC 58.628 37.037 0.00 0.00 0.00 2.59
1384 1386 8.497910 AGATGATTAAGTTTCCTAGCCATAGA 57.502 34.615 0.00 0.00 0.00 1.98
1385 1387 9.566432 AAAGATGATTAAGTTTCCTAGCCATAG 57.434 33.333 0.00 0.00 0.00 2.23
1386 1388 9.342308 CAAAGATGATTAAGTTTCCTAGCCATA 57.658 33.333 0.00 0.00 0.00 2.74
1387 1389 8.055181 TCAAAGATGATTAAGTTTCCTAGCCAT 58.945 33.333 0.00 0.00 0.00 4.40
1388 1390 7.402054 TCAAAGATGATTAAGTTTCCTAGCCA 58.598 34.615 0.00 0.00 0.00 4.75
1389 1391 7.865706 TCAAAGATGATTAAGTTTCCTAGCC 57.134 36.000 0.00 0.00 0.00 3.93
1404 1406 5.724328 ACTAGCTCGTTGAATCAAAGATGA 58.276 37.500 11.68 1.09 40.57 2.92
1405 1407 5.578336 TGACTAGCTCGTTGAATCAAAGATG 59.422 40.000 11.68 7.72 32.24 2.90
1406 1408 5.724328 TGACTAGCTCGTTGAATCAAAGAT 58.276 37.500 11.68 1.68 32.24 2.40
1407 1409 5.134202 TGACTAGCTCGTTGAATCAAAGA 57.866 39.130 10.87 10.87 31.82 2.52
1408 1410 5.406780 ACTTGACTAGCTCGTTGAATCAAAG 59.593 40.000 0.00 0.00 0.00 2.77
1409 1411 5.297547 ACTTGACTAGCTCGTTGAATCAAA 58.702 37.500 0.00 0.00 0.00 2.69
1410 1412 4.883083 ACTTGACTAGCTCGTTGAATCAA 58.117 39.130 0.00 0.00 0.00 2.57
1411 1413 4.521130 ACTTGACTAGCTCGTTGAATCA 57.479 40.909 0.00 0.00 0.00 2.57
1412 1414 5.881447 TCTACTTGACTAGCTCGTTGAATC 58.119 41.667 0.00 0.00 0.00 2.52
1413 1415 5.163602 CCTCTACTTGACTAGCTCGTTGAAT 60.164 44.000 0.00 0.00 0.00 2.57
1414 1416 4.156190 CCTCTACTTGACTAGCTCGTTGAA 59.844 45.833 0.00 0.00 0.00 2.69
1415 1417 3.690139 CCTCTACTTGACTAGCTCGTTGA 59.310 47.826 0.00 0.00 0.00 3.18
1416 1418 3.732471 GCCTCTACTTGACTAGCTCGTTG 60.732 52.174 0.00 0.00 0.00 4.10
1417 1419 2.424246 GCCTCTACTTGACTAGCTCGTT 59.576 50.000 0.00 0.00 0.00 3.85
1418 1420 2.018515 GCCTCTACTTGACTAGCTCGT 58.981 52.381 0.00 0.00 0.00 4.18
1419 1421 2.017782 TGCCTCTACTTGACTAGCTCG 58.982 52.381 0.00 0.00 0.00 5.03
1420 1422 4.825085 AGTATGCCTCTACTTGACTAGCTC 59.175 45.833 0.00 0.00 0.00 4.09
1421 1423 4.798882 AGTATGCCTCTACTTGACTAGCT 58.201 43.478 0.00 0.00 0.00 3.32
1422 1424 5.766174 ACTAGTATGCCTCTACTTGACTAGC 59.234 44.000 0.00 0.00 38.86 3.42
1423 1425 6.993308 TCACTAGTATGCCTCTACTTGACTAG 59.007 42.308 0.00 0.00 40.35 2.57
1424 1426 6.766944 GTCACTAGTATGCCTCTACTTGACTA 59.233 42.308 0.00 0.00 36.95 2.59
1425 1427 5.591067 GTCACTAGTATGCCTCTACTTGACT 59.409 44.000 0.00 0.00 36.95 3.41
1426 1428 5.357314 TGTCACTAGTATGCCTCTACTTGAC 59.643 44.000 0.00 11.98 38.64 3.18
1427 1429 5.357314 GTGTCACTAGTATGCCTCTACTTGA 59.643 44.000 0.00 0.18 33.96 3.02
1428 1430 5.358442 AGTGTCACTAGTATGCCTCTACTTG 59.642 44.000 2.87 0.00 33.96 3.16
1429 1431 5.511363 AGTGTCACTAGTATGCCTCTACTT 58.489 41.667 2.87 0.00 33.96 2.24
1430 1432 5.104277 AGAGTGTCACTAGTATGCCTCTACT 60.104 44.000 5.21 0.00 36.04 2.57
1431 1433 5.008217 CAGAGTGTCACTAGTATGCCTCTAC 59.992 48.000 5.21 0.00 0.00 2.59
1432 1434 5.126779 CAGAGTGTCACTAGTATGCCTCTA 58.873 45.833 5.21 0.00 0.00 2.43
1433 1435 3.951037 CAGAGTGTCACTAGTATGCCTCT 59.049 47.826 5.21 1.89 0.00 3.69
1434 1436 3.697045 ACAGAGTGTCACTAGTATGCCTC 59.303 47.826 5.21 0.00 0.00 4.70
1435 1437 3.702792 ACAGAGTGTCACTAGTATGCCT 58.297 45.455 5.21 0.00 0.00 4.75
1436 1438 4.457834 AACAGAGTGTCACTAGTATGCC 57.542 45.455 5.21 0.00 0.00 4.40
1437 1439 5.230942 ACAAACAGAGTGTCACTAGTATGC 58.769 41.667 5.21 0.00 0.00 3.14
1438 1440 6.682746 AGACAAACAGAGTGTCACTAGTATG 58.317 40.000 5.21 5.56 46.44 2.39
1439 1441 6.902771 AGACAAACAGAGTGTCACTAGTAT 57.097 37.500 5.21 0.00 46.44 2.12
1440 1442 7.447545 ACATAGACAAACAGAGTGTCACTAGTA 59.552 37.037 5.21 0.00 46.44 1.82
1441 1443 6.265649 ACATAGACAAACAGAGTGTCACTAGT 59.734 38.462 5.21 5.11 46.44 2.57
1442 1444 6.682746 ACATAGACAAACAGAGTGTCACTAG 58.317 40.000 5.21 4.44 46.44 2.57
1443 1445 6.650427 ACATAGACAAACAGAGTGTCACTA 57.350 37.500 5.21 0.00 46.44 2.74
1444 1446 5.537300 ACATAGACAAACAGAGTGTCACT 57.463 39.130 4.81 4.81 46.44 3.41
1445 1447 7.598869 TGAATACATAGACAAACAGAGTGTCAC 59.401 37.037 7.26 0.00 46.44 3.67
1446 1448 7.598869 GTGAATACATAGACAAACAGAGTGTCA 59.401 37.037 7.26 0.00 46.44 3.58
1447 1449 7.598869 TGTGAATACATAGACAAACAGAGTGTC 59.401 37.037 0.00 0.00 44.75 3.67
1448 1450 7.385205 GTGTGAATACATAGACAAACAGAGTGT 59.615 37.037 0.00 0.00 39.39 3.55
1449 1451 7.384932 TGTGTGAATACATAGACAAACAGAGTG 59.615 37.037 0.00 0.00 39.39 3.51
1450 1452 7.441836 TGTGTGAATACATAGACAAACAGAGT 58.558 34.615 0.00 0.00 39.39 3.24
1451 1453 7.889589 TGTGTGAATACATAGACAAACAGAG 57.110 36.000 0.00 0.00 39.39 3.35
1452 1454 7.877612 ACATGTGTGAATACATAGACAAACAGA 59.122 33.333 0.00 0.00 39.17 3.41
1453 1455 8.032952 ACATGTGTGAATACATAGACAAACAG 57.967 34.615 0.00 0.00 39.17 3.16
1454 1456 7.977789 ACATGTGTGAATACATAGACAAACA 57.022 32.000 0.00 0.00 39.17 2.83
1455 1457 9.151471 AGTACATGTGTGAATACATAGACAAAC 57.849 33.333 9.11 0.00 39.17 2.93
1458 1460 8.630037 CCTAGTACATGTGTGAATACATAGACA 58.370 37.037 9.11 0.00 39.17 3.41
1459 1461 8.630917 ACCTAGTACATGTGTGAATACATAGAC 58.369 37.037 9.11 0.00 39.17 2.59
1460 1462 8.762481 ACCTAGTACATGTGTGAATACATAGA 57.238 34.615 9.11 0.00 39.17 1.98
1461 1463 9.817809 AAACCTAGTACATGTGTGAATACATAG 57.182 33.333 9.11 2.08 39.17 2.23
1462 1464 9.811995 GAAACCTAGTACATGTGTGAATACATA 57.188 33.333 9.11 0.00 39.17 2.29
1463 1465 7.769044 GGAAACCTAGTACATGTGTGAATACAT 59.231 37.037 9.11 0.00 41.77 2.29
1464 1466 7.101054 GGAAACCTAGTACATGTGTGAATACA 58.899 38.462 9.11 0.00 34.63 2.29
1465 1467 6.255020 CGGAAACCTAGTACATGTGTGAATAC 59.745 42.308 9.11 0.00 0.00 1.89
1466 1468 6.153170 TCGGAAACCTAGTACATGTGTGAATA 59.847 38.462 9.11 0.00 0.00 1.75
1467 1469 5.046878 TCGGAAACCTAGTACATGTGTGAAT 60.047 40.000 9.11 0.00 0.00 2.57
1468 1470 4.281435 TCGGAAACCTAGTACATGTGTGAA 59.719 41.667 9.11 0.00 0.00 3.18
1469 1471 3.827876 TCGGAAACCTAGTACATGTGTGA 59.172 43.478 9.11 0.00 0.00 3.58
1470 1472 4.182693 TCGGAAACCTAGTACATGTGTG 57.817 45.455 9.11 0.00 0.00 3.82
1471 1473 5.416271 AATCGGAAACCTAGTACATGTGT 57.584 39.130 9.11 0.00 0.00 3.72
1472 1474 8.975439 GTATTAATCGGAAACCTAGTACATGTG 58.025 37.037 9.11 0.00 0.00 3.21
1473 1475 8.698210 TGTATTAATCGGAAACCTAGTACATGT 58.302 33.333 2.69 2.69 0.00 3.21
1474 1476 9.537192 TTGTATTAATCGGAAACCTAGTACATG 57.463 33.333 0.00 0.00 0.00 3.21
1481 1483 9.485206 GCTAGAATTGTATTAATCGGAAACCTA 57.515 33.333 0.00 0.00 0.00 3.08
1482 1484 7.990886 TGCTAGAATTGTATTAATCGGAAACCT 59.009 33.333 0.00 0.00 0.00 3.50
1483 1485 8.149973 TGCTAGAATTGTATTAATCGGAAACC 57.850 34.615 0.00 0.00 0.00 3.27
1484 1486 9.599322 CATGCTAGAATTGTATTAATCGGAAAC 57.401 33.333 0.00 0.00 0.00 2.78
1485 1487 9.554395 TCATGCTAGAATTGTATTAATCGGAAA 57.446 29.630 0.00 0.00 0.00 3.13
1486 1488 9.554395 TTCATGCTAGAATTGTATTAATCGGAA 57.446 29.630 0.00 0.00 0.00 4.30
1487 1489 9.725019 ATTCATGCTAGAATTGTATTAATCGGA 57.275 29.630 0.00 0.00 34.70 4.55
1562 1564 7.199105 ATTTGAAGGAAATATGCCCTAGAGGC 61.199 42.308 13.60 13.60 46.62 4.70
1563 1565 4.982241 TGAAGGAAATATGCCCTAGAGG 57.018 45.455 0.00 0.00 39.47 3.69
1564 1566 7.174599 CAGATTTGAAGGAAATATGCCCTAGAG 59.825 40.741 0.00 0.00 36.67 2.43
1565 1567 7.000472 CAGATTTGAAGGAAATATGCCCTAGA 59.000 38.462 0.00 0.00 36.67 2.43
1566 1568 6.208204 CCAGATTTGAAGGAAATATGCCCTAG 59.792 42.308 0.00 0.00 40.51 3.02
1567 1569 6.070656 CCAGATTTGAAGGAAATATGCCCTA 58.929 40.000 0.00 0.00 40.51 3.53
1568 1570 4.897670 CCAGATTTGAAGGAAATATGCCCT 59.102 41.667 0.00 0.00 40.51 5.19
1569 1571 4.651045 ACCAGATTTGAAGGAAATATGCCC 59.349 41.667 0.00 0.00 40.51 5.36
1570 1572 5.859205 ACCAGATTTGAAGGAAATATGCC 57.141 39.130 0.00 0.00 40.51 4.40
1571 1573 7.009540 CGAAAACCAGATTTGAAGGAAATATGC 59.990 37.037 0.00 0.00 40.51 3.14
1572 1574 7.009540 GCGAAAACCAGATTTGAAGGAAATATG 59.990 37.037 0.00 0.00 41.20 1.78
1573 1575 7.035612 GCGAAAACCAGATTTGAAGGAAATAT 58.964 34.615 0.00 0.00 34.18 1.28
1574 1576 6.208599 AGCGAAAACCAGATTTGAAGGAAATA 59.791 34.615 0.00 0.00 34.18 1.40
1575 1577 5.011023 AGCGAAAACCAGATTTGAAGGAAAT 59.989 36.000 0.00 0.00 36.94 2.17
1576 1578 4.340950 AGCGAAAACCAGATTTGAAGGAAA 59.659 37.500 0.00 0.00 0.00 3.13
1577 1579 3.888930 AGCGAAAACCAGATTTGAAGGAA 59.111 39.130 0.00 0.00 0.00 3.36
1578 1580 3.486383 AGCGAAAACCAGATTTGAAGGA 58.514 40.909 0.00 0.00 0.00 3.36
1579 1581 3.253188 TGAGCGAAAACCAGATTTGAAGG 59.747 43.478 0.00 0.00 0.00 3.46
1580 1582 4.023707 ACTGAGCGAAAACCAGATTTGAAG 60.024 41.667 0.00 0.00 0.00 3.02
1581 1583 3.882888 ACTGAGCGAAAACCAGATTTGAA 59.117 39.130 0.00 0.00 0.00 2.69
1582 1584 3.476552 ACTGAGCGAAAACCAGATTTGA 58.523 40.909 0.00 0.00 0.00 2.69
1583 1585 3.904136 ACTGAGCGAAAACCAGATTTG 57.096 42.857 0.00 0.00 0.00 2.32
1584 1586 4.918810 AAACTGAGCGAAAACCAGATTT 57.081 36.364 0.00 0.00 0.00 2.17
1585 1587 4.261614 GGAAAACTGAGCGAAAACCAGATT 60.262 41.667 0.00 0.00 0.00 2.40
1586 1588 3.253432 GGAAAACTGAGCGAAAACCAGAT 59.747 43.478 0.00 0.00 0.00 2.90
1587 1589 2.616842 GGAAAACTGAGCGAAAACCAGA 59.383 45.455 0.00 0.00 0.00 3.86
1588 1590 2.602217 CGGAAAACTGAGCGAAAACCAG 60.602 50.000 0.00 0.00 0.00 4.00
1589 1591 1.332375 CGGAAAACTGAGCGAAAACCA 59.668 47.619 0.00 0.00 0.00 3.67
1590 1592 1.332686 ACGGAAAACTGAGCGAAAACC 59.667 47.619 0.00 0.00 0.00 3.27
1591 1593 2.750301 ACGGAAAACTGAGCGAAAAC 57.250 45.000 0.00 0.00 0.00 2.43
1592 1594 5.427036 AATTACGGAAAACTGAGCGAAAA 57.573 34.783 0.00 0.00 0.00 2.29
1593 1595 6.365050 GTTAATTACGGAAAACTGAGCGAAA 58.635 36.000 0.00 0.00 0.00 3.46
1594 1596 5.106987 GGTTAATTACGGAAAACTGAGCGAA 60.107 40.000 0.00 0.00 0.00 4.70
1595 1597 4.389687 GGTTAATTACGGAAAACTGAGCGA 59.610 41.667 0.00 0.00 0.00 4.93
1596 1598 4.644954 GGTTAATTACGGAAAACTGAGCG 58.355 43.478 0.00 0.00 0.00 5.03
1597 1599 4.644954 CGGTTAATTACGGAAAACTGAGC 58.355 43.478 0.00 0.00 31.25 4.26
1608 1610 2.348660 TGAGTTGCCCGGTTAATTACG 58.651 47.619 0.00 0.00 0.00 3.18
1609 1611 4.976224 AATGAGTTGCCCGGTTAATTAC 57.024 40.909 0.00 0.00 0.00 1.89
1610 1612 5.258051 AGAAATGAGTTGCCCGGTTAATTA 58.742 37.500 0.00 0.00 0.00 1.40
1611 1613 4.086457 AGAAATGAGTTGCCCGGTTAATT 58.914 39.130 0.00 0.00 0.00 1.40
1612 1614 3.697166 AGAAATGAGTTGCCCGGTTAAT 58.303 40.909 0.00 0.00 0.00 1.40
1613 1615 3.149005 AGAAATGAGTTGCCCGGTTAA 57.851 42.857 0.00 0.00 0.00 2.01
1614 1616 2.871096 AGAAATGAGTTGCCCGGTTA 57.129 45.000 0.00 0.00 0.00 2.85
1615 1617 1.886542 GAAGAAATGAGTTGCCCGGTT 59.113 47.619 0.00 0.00 0.00 4.44
1616 1618 1.073923 AGAAGAAATGAGTTGCCCGGT 59.926 47.619 0.00 0.00 0.00 5.28
1617 1619 1.826385 AGAAGAAATGAGTTGCCCGG 58.174 50.000 0.00 0.00 0.00 5.73
1618 1620 5.123820 TCATTAAGAAGAAATGAGTTGCCCG 59.876 40.000 0.00 0.00 38.19 6.13
1619 1621 6.515272 TCATTAAGAAGAAATGAGTTGCCC 57.485 37.500 0.00 0.00 38.19 5.36
1620 1622 8.031277 ACATTCATTAAGAAGAAATGAGTTGCC 58.969 33.333 0.00 0.00 42.58 4.52
1621 1623 8.976986 ACATTCATTAAGAAGAAATGAGTTGC 57.023 30.769 0.00 0.00 42.58 4.17
1633 1635 9.958180 TGACAAGATTCCTACATTCATTAAGAA 57.042 29.630 0.00 0.00 41.28 2.52
1638 1640 9.246670 TGAAATGACAAGATTCCTACATTCATT 57.753 29.630 0.00 0.00 34.66 2.57
1639 1641 8.812513 TGAAATGACAAGATTCCTACATTCAT 57.187 30.769 0.00 0.00 0.00 2.57
1640 1642 8.634335 TTGAAATGACAAGATTCCTACATTCA 57.366 30.769 0.00 0.00 0.00 2.57
1641 1643 9.912634 TTTTGAAATGACAAGATTCCTACATTC 57.087 29.630 0.00 0.00 0.00 2.67
1666 1668 4.402616 TGTTCTCCCTCCCATCATTTTT 57.597 40.909 0.00 0.00 0.00 1.94
1667 1669 4.017222 TCATGTTCTCCCTCCCATCATTTT 60.017 41.667 0.00 0.00 0.00 1.82
1668 1670 3.528905 TCATGTTCTCCCTCCCATCATTT 59.471 43.478 0.00 0.00 0.00 2.32
1669 1671 3.125656 TCATGTTCTCCCTCCCATCATT 58.874 45.455 0.00 0.00 0.00 2.57
1670 1672 2.780414 TCATGTTCTCCCTCCCATCAT 58.220 47.619 0.00 0.00 0.00 2.45
1671 1673 2.268796 TCATGTTCTCCCTCCCATCA 57.731 50.000 0.00 0.00 0.00 3.07
1672 1674 5.251764 CAATATCATGTTCTCCCTCCCATC 58.748 45.833 0.00 0.00 0.00 3.51
1673 1675 4.043812 CCAATATCATGTTCTCCCTCCCAT 59.956 45.833 0.00 0.00 0.00 4.00
1674 1676 3.395607 CCAATATCATGTTCTCCCTCCCA 59.604 47.826 0.00 0.00 0.00 4.37
1675 1677 3.245052 CCCAATATCATGTTCTCCCTCCC 60.245 52.174 0.00 0.00 0.00 4.30
1676 1678 3.652869 TCCCAATATCATGTTCTCCCTCC 59.347 47.826 0.00 0.00 0.00 4.30
1677 1679 4.263243 CCTCCCAATATCATGTTCTCCCTC 60.263 50.000 0.00 0.00 0.00 4.30
1678 1680 3.654806 CCTCCCAATATCATGTTCTCCCT 59.345 47.826 0.00 0.00 0.00 4.20
1679 1681 3.652869 TCCTCCCAATATCATGTTCTCCC 59.347 47.826 0.00 0.00 0.00 4.30
1680 1682 4.982241 TCCTCCCAATATCATGTTCTCC 57.018 45.455 0.00 0.00 0.00 3.71
1681 1683 5.874093 ACATCCTCCCAATATCATGTTCTC 58.126 41.667 0.00 0.00 0.00 2.87
1682 1684 5.919348 ACATCCTCCCAATATCATGTTCT 57.081 39.130 0.00 0.00 0.00 3.01
1683 1685 6.302269 AGAACATCCTCCCAATATCATGTTC 58.698 40.000 12.58 12.58 45.46 3.18
1684 1686 6.271585 AGAACATCCTCCCAATATCATGTT 57.728 37.500 0.00 0.00 37.21 2.71
1685 1687 5.919348 AGAACATCCTCCCAATATCATGT 57.081 39.130 0.00 0.00 0.00 3.21
1686 1688 7.250032 TCTAGAACATCCTCCCAATATCATG 57.750 40.000 0.00 0.00 0.00 3.07
1687 1689 7.878621 TTCTAGAACATCCTCCCAATATCAT 57.121 36.000 0.00 0.00 0.00 2.45
1688 1690 7.878621 ATTCTAGAACATCCTCCCAATATCA 57.121 36.000 7.48 0.00 0.00 2.15
1689 1691 8.160106 ACAATTCTAGAACATCCTCCCAATATC 58.840 37.037 7.48 0.00 0.00 1.63
1690 1692 8.050316 ACAATTCTAGAACATCCTCCCAATAT 57.950 34.615 7.48 0.00 0.00 1.28
1691 1693 7.451731 ACAATTCTAGAACATCCTCCCAATA 57.548 36.000 7.48 0.00 0.00 1.90
1692 1694 6.332976 ACAATTCTAGAACATCCTCCCAAT 57.667 37.500 7.48 0.00 0.00 3.16
1693 1695 5.779241 ACAATTCTAGAACATCCTCCCAA 57.221 39.130 7.48 0.00 0.00 4.12
1694 1696 5.488919 AGAACAATTCTAGAACATCCTCCCA 59.511 40.000 7.48 0.00 38.49 4.37
1695 1697 5.995446 AGAACAATTCTAGAACATCCTCCC 58.005 41.667 7.48 0.00 38.49 4.30
1696 1698 6.317391 CCAAGAACAATTCTAGAACATCCTCC 59.683 42.308 7.48 0.00 39.61 4.30
1697 1699 6.183360 GCCAAGAACAATTCTAGAACATCCTC 60.183 42.308 7.48 1.68 39.61 3.71
1698 1700 5.649831 GCCAAGAACAATTCTAGAACATCCT 59.350 40.000 7.48 0.00 39.61 3.24
1699 1701 5.447818 CGCCAAGAACAATTCTAGAACATCC 60.448 44.000 7.48 0.00 39.61 3.51
1700 1702 5.122396 ACGCCAAGAACAATTCTAGAACATC 59.878 40.000 7.48 4.14 39.61 3.06
1701 1703 5.003804 ACGCCAAGAACAATTCTAGAACAT 58.996 37.500 7.48 0.00 39.61 2.71
1702 1704 4.213270 CACGCCAAGAACAATTCTAGAACA 59.787 41.667 7.48 0.00 39.61 3.18
1703 1705 4.712763 CACGCCAAGAACAATTCTAGAAC 58.287 43.478 7.48 0.00 39.61 3.01
1704 1706 3.188460 GCACGCCAAGAACAATTCTAGAA 59.812 43.478 7.82 7.82 39.61 2.10
1705 1707 2.742053 GCACGCCAAGAACAATTCTAGA 59.258 45.455 0.00 0.00 39.61 2.43
1706 1708 2.744202 AGCACGCCAAGAACAATTCTAG 59.256 45.455 0.00 0.00 39.61 2.43
1707 1709 2.778299 AGCACGCCAAGAACAATTCTA 58.222 42.857 0.00 0.00 39.61 2.10
1708 1710 1.609208 AGCACGCCAAGAACAATTCT 58.391 45.000 0.00 0.00 43.15 2.40
1709 1711 2.053627 CAAGCACGCCAAGAACAATTC 58.946 47.619 0.00 0.00 0.00 2.17
1710 1712 1.869342 GCAAGCACGCCAAGAACAATT 60.869 47.619 0.00 0.00 0.00 2.32
1711 1713 0.318955 GCAAGCACGCCAAGAACAAT 60.319 50.000 0.00 0.00 0.00 2.71
1712 1714 1.065600 GCAAGCACGCCAAGAACAA 59.934 52.632 0.00 0.00 0.00 2.83
1713 1715 2.721231 GCAAGCACGCCAAGAACA 59.279 55.556 0.00 0.00 0.00 3.18
1721 1723 3.253230 AGAATTAAATTGGCAAGCACGC 58.747 40.909 5.96 0.00 0.00 5.34
1722 1724 4.495472 CGTAGAATTAAATTGGCAAGCACG 59.505 41.667 5.96 1.19 0.00 5.34
1723 1725 5.399013 ACGTAGAATTAAATTGGCAAGCAC 58.601 37.500 5.96 0.00 0.00 4.40
1724 1726 5.637006 ACGTAGAATTAAATTGGCAAGCA 57.363 34.783 5.96 0.00 0.00 3.91
1725 1727 6.548171 TGTACGTAGAATTAAATTGGCAAGC 58.452 36.000 5.96 0.00 0.00 4.01
1726 1728 8.846607 GTTTGTACGTAGAATTAAATTGGCAAG 58.153 33.333 5.94 0.00 0.00 4.01
1727 1729 8.569641 AGTTTGTACGTAGAATTAAATTGGCAA 58.430 29.630 5.94 0.68 0.00 4.52
1728 1730 8.018520 CAGTTTGTACGTAGAATTAAATTGGCA 58.981 33.333 5.94 0.00 0.00 4.92
1729 1731 8.019094 ACAGTTTGTACGTAGAATTAAATTGGC 58.981 33.333 5.94 0.00 0.00 4.52
1730 1732 9.887406 AACAGTTTGTACGTAGAATTAAATTGG 57.113 29.630 5.94 0.00 0.00 3.16
1734 1736 9.096160 TGTCAACAGTTTGTACGTAGAATTAAA 57.904 29.630 5.94 0.00 34.02 1.52
1735 1737 8.542132 GTGTCAACAGTTTGTACGTAGAATTAA 58.458 33.333 5.94 0.00 34.02 1.40
1736 1738 7.169645 GGTGTCAACAGTTTGTACGTAGAATTA 59.830 37.037 5.94 0.00 34.02 1.40
1737 1739 6.018507 GGTGTCAACAGTTTGTACGTAGAATT 60.019 38.462 5.94 0.00 34.02 2.17
1738 1740 5.464389 GGTGTCAACAGTTTGTACGTAGAAT 59.536 40.000 5.94 0.00 34.02 2.40
1739 1741 4.805192 GGTGTCAACAGTTTGTACGTAGAA 59.195 41.667 0.22 0.22 34.02 2.10
1740 1742 4.098349 AGGTGTCAACAGTTTGTACGTAGA 59.902 41.667 0.00 0.00 34.02 2.59
1741 1743 4.208460 CAGGTGTCAACAGTTTGTACGTAG 59.792 45.833 0.00 0.00 34.02 3.51
1742 1744 4.114073 CAGGTGTCAACAGTTTGTACGTA 58.886 43.478 0.00 0.00 34.02 3.57
1743 1745 2.933906 CAGGTGTCAACAGTTTGTACGT 59.066 45.455 0.00 0.00 34.02 3.57
1744 1746 3.191669 TCAGGTGTCAACAGTTTGTACG 58.808 45.455 0.00 0.00 34.02 3.67
1745 1747 5.751243 AATCAGGTGTCAACAGTTTGTAC 57.249 39.130 0.00 0.00 34.02 2.90
1746 1748 6.405286 CCAAAATCAGGTGTCAACAGTTTGTA 60.405 38.462 0.00 0.00 34.02 2.41
1747 1749 5.410067 CAAAATCAGGTGTCAACAGTTTGT 58.590 37.500 0.00 0.00 34.02 2.83
1748 1750 4.805192 CCAAAATCAGGTGTCAACAGTTTG 59.195 41.667 0.00 0.00 0.00 2.93
1749 1751 4.680440 GCCAAAATCAGGTGTCAACAGTTT 60.680 41.667 0.00 0.00 0.00 2.66
1956 1966 3.054139 TCCTCCATCAAAGGTCATCTTGG 60.054 47.826 0.00 0.00 35.55 3.61
1969 1979 2.768527 CCTTAAGAGTGCTCCTCCATCA 59.231 50.000 3.36 0.00 41.47 3.07
1974 1984 4.837972 ACAATTCCTTAAGAGTGCTCCTC 58.162 43.478 3.36 0.00 40.80 3.71
2155 3898 1.295792 TCGATTCAAGGCCGTATTGC 58.704 50.000 0.00 0.00 0.00 3.56
2289 4035 4.065088 TCACTTGGATTTCCGACTGAAAG 58.935 43.478 0.00 0.00 45.74 2.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.