Multiple sequence alignment - TraesCS7A01G133400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G133400 chr7A 100.000 4435 0 0 1 4435 85612195 85607761 0.000000e+00 8191.0
1 TraesCS7A01G133400 chr7A 78.155 412 49 21 1619 1999 525503576 525503175 1.610000e-54 224.0
2 TraesCS7A01G133400 chr7A 77.995 409 49 20 1619 1996 107898873 107899271 7.470000e-53 219.0
3 TraesCS7A01G133400 chr7A 79.808 312 31 16 1719 1999 695064366 695064056 9.730000e-47 198.0
4 TraesCS7A01G133400 chr7A 98.837 86 0 1 3292 3376 85608864 85608779 7.680000e-33 152.0
5 TraesCS7A01G133400 chr7A 98.837 86 0 1 3332 3417 85608904 85608820 7.680000e-33 152.0
6 TraesCS7A01G133400 chr7A 97.778 45 0 1 3292 3335 85608823 85608779 4.760000e-10 76.8
7 TraesCS7A01G133400 chr7A 97.778 45 0 1 3373 3417 85608904 85608861 4.760000e-10 76.8
8 TraesCS7A01G133400 chr7D 93.140 758 29 9 1 757 84260110 84259375 0.000000e+00 1090.0
9 TraesCS7A01G133400 chr7D 82.955 1279 116 54 1617 2823 84256036 84254788 0.000000e+00 1061.0
10 TraesCS7A01G133400 chr7D 85.864 573 25 23 1001 1526 84256661 84256098 3.870000e-155 558.0
11 TraesCS7A01G133400 chr7D 82.966 681 46 31 3796 4435 84252214 84251563 6.480000e-153 551.0
12 TraesCS7A01G133400 chr7D 98.276 58 1 0 760 817 84259344 84259287 7.850000e-18 102.0
13 TraesCS7A01G133400 chr7D 87.654 81 9 1 803 882 84259266 84259186 4.720000e-15 93.5
14 TraesCS7A01G133400 chr7B 90.864 810 39 15 1 796 33906587 33905799 0.000000e+00 1053.0
15 TraesCS7A01G133400 chr7B 84.615 1118 74 36 1617 2662 33903340 33902249 0.000000e+00 1022.0
16 TraesCS7A01G133400 chr7B 85.202 669 35 24 927 1540 33904048 33903389 2.910000e-176 628.0
17 TraesCS7A01G133400 chr7B 85.312 640 25 27 3790 4362 33901165 33900528 8.210000e-167 597.0
18 TraesCS7A01G133400 chr7B 78.378 666 74 38 2717 3329 33902252 33901604 7.010000e-98 368.0
19 TraesCS7A01G133400 chr7B 88.889 81 8 1 803 882 33905727 33905647 1.020000e-16 99.0
20 TraesCS7A01G133400 chr7B 96.552 58 2 0 760 817 33905803 33905746 3.650000e-16 97.1
21 TraesCS7A01G133400 chr3B 86.066 244 26 5 2720 2958 559103975 559103735 5.690000e-64 255.0
22 TraesCS7A01G133400 chr3B 78.243 239 28 15 3112 3335 780862127 780861898 1.000000e-26 132.0
23 TraesCS7A01G133400 chr1B 86.580 231 25 3 2720 2946 343953817 343954045 2.650000e-62 250.0
24 TraesCS7A01G133400 chr2A 79.126 412 45 19 1619 1999 701951127 701950726 3.430000e-61 246.0
25 TraesCS7A01G133400 chr2A 78.186 408 50 21 1619 1996 282267218 282267616 1.610000e-54 224.0
26 TraesCS7A01G133400 chr2A 78.208 413 47 23 1619 1999 513716470 513716069 1.610000e-54 224.0
27 TraesCS7A01G133400 chr2A 77.995 409 49 19 1619 1996 576567961 576568359 7.470000e-53 219.0
28 TraesCS7A01G133400 chr4A 78.973 409 45 20 1619 1996 551689903 551690301 1.590000e-59 241.0
29 TraesCS7A01G133400 chr4A 78.484 409 47 21 1619 1996 143494420 143494818 3.450000e-56 230.0
30 TraesCS7A01G133400 chr4A 78.240 409 48 19 1619 1996 184838389 184838787 1.610000e-54 224.0
31 TraesCS7A01G133400 chr4A 77.966 413 50 21 1618 1999 160933709 160933307 2.080000e-53 220.0
32 TraesCS7A01G133400 chr3A 78.641 412 46 21 1619 1999 295386581 295386181 7.420000e-58 235.0
33 TraesCS7A01G133400 chr3A 78.155 412 49 18 1619 1999 523969691 523969290 1.610000e-54 224.0
34 TraesCS7A01G133400 chr6A 78.293 410 46 22 1619 1996 207009397 207009795 1.610000e-54 224.0
35 TraesCS7A01G133400 chr6B 81.818 143 21 5 3194 3335 114243044 114243182 1.010000e-21 115.0
36 TraesCS7A01G133400 chr6B 97.674 43 1 0 3382 3424 114243147 114243189 1.710000e-09 75.0
37 TraesCS7A01G133400 chr6B 97.222 36 1 0 3341 3376 114243147 114243182 1.330000e-05 62.1
38 TraesCS7A01G133400 chr6D 85.870 92 11 2 3244 3335 45937684 45937773 3.650000e-16 97.1
39 TraesCS7A01G133400 chr6D 97.778 45 1 0 3382 3426 45937738 45937782 1.320000e-10 78.7
40 TraesCS7A01G133400 chr6D 97.222 36 1 0 3341 3376 45937738 45937773 1.330000e-05 62.1
41 TraesCS7A01G133400 chr3D 93.750 48 2 1 1424 1470 121261638 121261591 2.210000e-08 71.3
42 TraesCS7A01G133400 chr1A 100.000 33 0 0 930 962 363638190 363638158 1.330000e-05 62.1
43 TraesCS7A01G133400 chr4D 96.875 32 1 0 932 963 503269776 503269807 2.000000e-03 54.7
44 TraesCS7A01G133400 chr2B 100.000 28 0 0 932 959 61471517 61471490 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G133400 chr7A 85607761 85612195 4434 True 1729.720000 8191 98.646000 1 4435 5 chr7A.!!$R3 4434
1 TraesCS7A01G133400 chr7D 84251563 84260110 8547 True 575.916667 1090 88.475833 1 4435 6 chr7D.!!$R1 4434
2 TraesCS7A01G133400 chr7B 33900528 33906587 6059 True 552.014286 1053 87.116000 1 4362 7 chr7B.!!$R1 4361

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
24 25 0.389391 ACAACTGACCAGTGTCCGAG 59.611 55.0 3.13 0.0 41.58 4.63 F
1537 4279 0.326927 TGGAAGTTTTAGGAGCCCGG 59.673 55.0 0.00 0.0 0.00 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1541 4283 0.035317 TTAGAGGTGGCAGTGCACTG 59.965 55.0 37.09 37.09 46.4 3.66 R
3442 6945 0.036294 AGGTAAAACCGGCAGAGCTC 60.036 55.0 5.27 5.27 44.9 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 0.389391 ACAACTGACCAGTGTCCGAG 59.611 55.000 3.13 0.00 41.58 4.63
25 26 0.946221 CAACTGACCAGTGTCCGAGC 60.946 60.000 3.13 0.00 41.58 5.03
26 27 2.100879 AACTGACCAGTGTCCGAGCC 62.101 60.000 3.13 0.00 41.58 4.70
27 28 3.633094 CTGACCAGTGTCCGAGCCG 62.633 68.421 0.00 0.00 41.01 5.52
66 67 8.832735 AGAGTTTCAGTATCCTAAAACCCAATA 58.167 33.333 0.00 0.00 33.18 1.90
83 84 6.710278 ACCCAATAAATCATCAACCCAAAAG 58.290 36.000 0.00 0.00 0.00 2.27
123 124 5.953183 AGCAATTTTCTGAATATGCAACGA 58.047 33.333 18.46 0.00 36.30 3.85
403 409 1.610522 CTGCTGAAGGAACAAACCCAG 59.389 52.381 0.00 0.00 0.00 4.45
415 421 3.431415 ACAAACCCAGGAATAAGAAGCC 58.569 45.455 0.00 0.00 0.00 4.35
598 608 7.868906 TTTGTACTGTACTGCCTTTTTACTT 57.131 32.000 17.98 0.00 0.00 2.24
751 761 2.936498 CACCGATTAACTTTGGCTCGAT 59.064 45.455 0.00 0.00 0.00 3.59
771 818 6.330278 TCGATGACCAGTTAGAGTAAACATG 58.670 40.000 0.00 0.00 0.00 3.21
855 938 1.217882 GTGAACTCACCACCAACTCG 58.782 55.000 0.00 0.00 40.85 4.18
869 952 8.723311 CACCACCAACTCGAAATTTTATAAGTA 58.277 33.333 0.00 0.00 0.00 2.24
986 2795 5.070313 AGTGATAAGATCTCTTTGAGGCCTC 59.930 44.000 26.78 26.78 37.40 4.70
1146 3840 2.125350 CCTCCACCTTCGCTCAGC 60.125 66.667 0.00 0.00 0.00 4.26
1177 3871 2.190578 CTCCAGCGATTCCCCACC 59.809 66.667 0.00 0.00 0.00 4.61
1178 3872 3.406595 CTCCAGCGATTCCCCACCC 62.407 68.421 0.00 0.00 0.00 4.61
1179 3873 3.411517 CCAGCGATTCCCCACCCT 61.412 66.667 0.00 0.00 0.00 4.34
1183 3877 2.680370 GCGATTCCCCACCCTCCTT 61.680 63.158 0.00 0.00 0.00 3.36
1191 3889 1.621672 CCCACCCTCCTTCTCTCTGC 61.622 65.000 0.00 0.00 0.00 4.26
1292 3990 1.246737 GCAGCAGGTGGGGAAAAGAG 61.247 60.000 0.86 0.00 0.00 2.85
1401 4120 4.778579 CAGATGTGGGATTCAGAGAATGT 58.221 43.478 0.00 0.00 0.00 2.71
1437 4167 7.718272 AGAATGTTGTGTTTCATGAAAATGG 57.282 32.000 22.07 0.00 31.33 3.16
1442 4172 7.917597 TGTTGTGTTTCATGAAAATGGAATTG 58.082 30.769 22.07 0.00 36.10 2.32
1451 4181 1.273986 AAATGGAATTGGGGGCCTGC 61.274 55.000 0.84 0.00 36.10 4.85
1461 4191 3.443925 GGGCCTGCGCTCCTTTTC 61.444 66.667 9.73 0.00 34.44 2.29
1462 4192 2.360475 GGCCTGCGCTCCTTTTCT 60.360 61.111 9.73 0.00 34.44 2.52
1463 4193 2.402572 GGCCTGCGCTCCTTTTCTC 61.403 63.158 9.73 0.00 34.44 2.87
1464 4194 2.744768 GCCTGCGCTCCTTTTCTCG 61.745 63.158 9.73 0.00 0.00 4.04
1465 4195 1.079819 CCTGCGCTCCTTTTCTCGA 60.080 57.895 9.73 0.00 0.00 4.04
1466 4196 0.670546 CCTGCGCTCCTTTTCTCGAA 60.671 55.000 9.73 0.00 0.00 3.71
1467 4197 1.148310 CTGCGCTCCTTTTCTCGAAA 58.852 50.000 9.73 0.00 0.00 3.46
1468 4198 1.531149 CTGCGCTCCTTTTCTCGAAAA 59.469 47.619 9.73 4.90 37.90 2.29
1469 4199 1.944024 TGCGCTCCTTTTCTCGAAAAA 59.056 42.857 9.73 0.00 39.49 1.94
1470 4200 2.552315 TGCGCTCCTTTTCTCGAAAAAT 59.448 40.909 9.73 0.00 39.49 1.82
1471 4201 2.911102 GCGCTCCTTTTCTCGAAAAATG 59.089 45.455 0.00 0.00 39.49 2.32
1475 4217 5.858581 CGCTCCTTTTCTCGAAAAATGAAAT 59.141 36.000 6.33 0.00 39.49 2.17
1502 4244 8.105829 AGTTCAGTTAGAATTGTTGAGATCCAT 58.894 33.333 0.00 0.00 38.76 3.41
1505 4247 9.958180 TCAGTTAGAATTGTTGAGATCCATTTA 57.042 29.630 0.00 0.00 0.00 1.40
1535 4277 3.435169 CCCTATGGAAGTTTTAGGAGCCC 60.435 52.174 8.36 0.00 35.50 5.19
1537 4279 0.326927 TGGAAGTTTTAGGAGCCCGG 59.673 55.000 0.00 0.00 0.00 5.73
1538 4280 0.616891 GGAAGTTTTAGGAGCCCGGA 59.383 55.000 0.73 0.00 0.00 5.14
1539 4281 1.407025 GGAAGTTTTAGGAGCCCGGAG 60.407 57.143 0.73 0.00 0.00 4.63
1540 4282 0.035343 AAGTTTTAGGAGCCCGGAGC 60.035 55.000 0.73 4.57 44.25 4.70
1541 4283 1.451567 GTTTTAGGAGCCCGGAGCC 60.452 63.158 0.73 0.00 45.47 4.70
1542 4284 1.921346 TTTTAGGAGCCCGGAGCCA 60.921 57.895 0.73 0.00 45.47 4.75
1543 4285 1.910580 TTTTAGGAGCCCGGAGCCAG 61.911 60.000 0.73 0.00 45.47 4.85
1544 4286 3.618855 TTAGGAGCCCGGAGCCAGT 62.619 63.158 0.73 0.00 45.47 4.00
1553 4295 4.648626 GGAGCCAGTGCACTGCCA 62.649 66.667 36.38 0.00 42.47 4.92
1554 4296 3.360340 GAGCCAGTGCACTGCCAC 61.360 66.667 36.38 27.06 42.47 5.01
1555 4297 4.962836 AGCCAGTGCACTGCCACC 62.963 66.667 36.38 23.75 42.47 4.61
1556 4298 4.962836 GCCAGTGCACTGCCACCT 62.963 66.667 36.38 3.77 42.47 4.00
1557 4299 2.670934 CCAGTGCACTGCCACCTC 60.671 66.667 36.38 0.00 42.47 3.85
1558 4300 2.429058 CAGTGCACTGCCACCTCT 59.571 61.111 32.39 0.00 37.15 3.69
1559 4301 1.673477 CAGTGCACTGCCACCTCTA 59.327 57.895 32.39 0.00 37.15 2.43
1560 4302 0.035317 CAGTGCACTGCCACCTCTAA 59.965 55.000 32.39 0.00 37.15 2.10
1561 4303 0.035458 AGTGCACTGCCACCTCTAAC 59.965 55.000 20.97 0.00 36.38 2.34
1562 4304 0.955919 GTGCACTGCCACCTCTAACC 60.956 60.000 10.32 0.00 0.00 2.85
1563 4305 1.377333 GCACTGCCACCTCTAACCC 60.377 63.158 0.00 0.00 0.00 4.11
1564 4306 1.079127 CACTGCCACCTCTAACCCG 60.079 63.158 0.00 0.00 0.00 5.28
1565 4307 2.291043 ACTGCCACCTCTAACCCGG 61.291 63.158 0.00 0.00 0.00 5.73
1566 4308 1.987855 CTGCCACCTCTAACCCGGA 60.988 63.158 0.73 0.00 0.00 5.14
1567 4309 1.961180 CTGCCACCTCTAACCCGGAG 61.961 65.000 0.73 0.00 0.00 4.63
1568 4310 1.988406 GCCACCTCTAACCCGGAGT 60.988 63.158 0.73 0.00 0.00 3.85
1569 4311 1.957765 GCCACCTCTAACCCGGAGTC 61.958 65.000 0.73 0.00 0.00 3.36
1570 4312 1.328430 CCACCTCTAACCCGGAGTCC 61.328 65.000 0.73 0.00 0.00 3.85
1590 4332 3.554324 TCCGAACTGAAGAAACGTTTCTG 59.446 43.478 36.86 27.67 46.22 3.02
1591 4333 3.308866 CCGAACTGAAGAAACGTTTCTGT 59.691 43.478 36.86 28.24 46.22 3.41
1592 4334 4.201783 CCGAACTGAAGAAACGTTTCTGTT 60.202 41.667 36.86 33.03 46.22 3.16
1593 4335 4.956184 CGAACTGAAGAAACGTTTCTGTTC 59.044 41.667 35.05 35.05 46.22 3.18
1594 4336 4.877323 ACTGAAGAAACGTTTCTGTTCC 57.123 40.909 36.86 26.15 46.22 3.62
1595 4337 4.514401 ACTGAAGAAACGTTTCTGTTCCT 58.486 39.130 36.86 24.25 46.22 3.36
1606 4348 5.163437 ACGTTTCTGTTCCTTCAGACTAAGT 60.163 40.000 0.00 0.00 43.01 2.24
1613 4355 9.139734 TCTGTTCCTTCAGACTAAGTAAGTTAA 57.860 33.333 0.00 0.00 39.07 2.01
1660 4417 5.677091 GCGATGGTGATAAGCTTTCATGTTT 60.677 40.000 3.20 0.00 0.00 2.83
1661 4418 5.967674 CGATGGTGATAAGCTTTCATGTTTC 59.032 40.000 3.20 4.62 0.00 2.78
1662 4419 6.403527 CGATGGTGATAAGCTTTCATGTTTCA 60.404 38.462 3.20 4.74 0.00 2.69
1663 4420 6.012658 TGGTGATAAGCTTTCATGTTTCAC 57.987 37.500 3.20 7.05 33.28 3.18
1664 4421 5.088739 GGTGATAAGCTTTCATGTTTCACG 58.911 41.667 3.20 0.00 34.51 4.35
1665 4422 5.334879 GGTGATAAGCTTTCATGTTTCACGT 60.335 40.000 3.20 0.00 34.51 4.49
1666 4423 6.142817 GTGATAAGCTTTCATGTTTCACGTT 58.857 36.000 3.20 0.00 0.00 3.99
1668 4425 2.731217 AGCTTTCATGTTTCACGTTGC 58.269 42.857 0.00 0.00 0.00 4.17
1669 4426 2.358898 AGCTTTCATGTTTCACGTTGCT 59.641 40.909 0.00 0.00 0.00 3.91
1670 4427 2.468777 GCTTTCATGTTTCACGTTGCTG 59.531 45.455 0.00 0.00 0.00 4.41
1671 4428 3.694734 CTTTCATGTTTCACGTTGCTGT 58.305 40.909 0.00 0.00 0.00 4.40
1672 4429 3.332761 TTCATGTTTCACGTTGCTGTC 57.667 42.857 0.00 0.00 0.00 3.51
1673 4430 2.284190 TCATGTTTCACGTTGCTGTCA 58.716 42.857 0.00 0.00 0.00 3.58
1674 4431 2.680339 TCATGTTTCACGTTGCTGTCAA 59.320 40.909 0.00 0.00 0.00 3.18
1676 4433 3.063670 TGTTTCACGTTGCTGTCAATG 57.936 42.857 0.00 0.00 43.19 2.82
1677 4434 1.780860 GTTTCACGTTGCTGTCAATGC 59.219 47.619 0.00 0.00 41.70 3.56
1678 4435 0.310543 TTCACGTTGCTGTCAATGCC 59.689 50.000 0.00 0.00 41.70 4.40
1679 4436 0.817229 TCACGTTGCTGTCAATGCCA 60.817 50.000 0.00 0.00 41.70 4.92
1680 4437 0.241749 CACGTTGCTGTCAATGCCAT 59.758 50.000 0.00 0.00 41.70 4.40
1681 4438 0.523072 ACGTTGCTGTCAATGCCATC 59.477 50.000 0.00 0.00 41.70 3.51
1690 4447 4.082571 GCTGTCAATGCCATCTTGTAGTTT 60.083 41.667 0.00 0.00 0.00 2.66
1694 4451 5.048782 GTCAATGCCATCTTGTAGTTTGTCA 60.049 40.000 0.00 0.00 0.00 3.58
1695 4452 5.181811 TCAATGCCATCTTGTAGTTTGTCAG 59.818 40.000 0.00 0.00 0.00 3.51
1709 4474 1.475403 TGTCAGAGGGTTCGATCTCC 58.525 55.000 7.15 1.42 0.00 3.71
1729 4494 9.593134 GATCTCCGTTAATTATTCATCTATGCT 57.407 33.333 0.00 0.00 0.00 3.79
1749 4514 4.532126 TGCTATCTGGGGTCTTGGTATATG 59.468 45.833 0.00 0.00 0.00 1.78
1751 4516 2.054799 TCTGGGGTCTTGGTATATGGC 58.945 52.381 0.00 0.00 0.00 4.40
1762 4527 1.734465 GGTATATGGCGATGAAGCTGC 59.266 52.381 0.00 0.00 37.29 5.25
1798 4563 5.065218 CCTGCTTGCTAATACTTGTTACTGG 59.935 44.000 0.00 0.00 0.00 4.00
1826 4591 6.504398 TCTGCCGATCTGTTATTAGTTACTG 58.496 40.000 0.00 0.00 0.00 2.74
1852 4645 8.129211 GCTGTTATGGTACTGATTTTTATGGTC 58.871 37.037 0.00 0.00 0.00 4.02
1898 4699 5.379732 TTGTTTACTCTATTTTTGGGGCG 57.620 39.130 0.00 0.00 0.00 6.13
1936 4737 7.515998 GCGCTCTACTGATTTCATTAAGAGAAC 60.516 40.741 0.00 5.36 32.33 3.01
1948 4749 4.698583 TTAAGAGAACGAGTAGCAGGTC 57.301 45.455 0.00 0.00 0.00 3.85
1951 4752 1.751924 GAGAACGAGTAGCAGGTCCAT 59.248 52.381 0.00 0.00 0.00 3.41
1957 4758 5.864418 ACGAGTAGCAGGTCCATTATTTA 57.136 39.130 0.00 0.00 0.00 1.40
1960 4761 5.869888 CGAGTAGCAGGTCCATTATTTATCC 59.130 44.000 0.00 0.00 0.00 2.59
1989 4790 5.621193 TCTTTCTCTTGTAACTTTCTGGGG 58.379 41.667 0.00 0.00 0.00 4.96
2025 4836 9.905713 ATATCAGCAGGATTCAGTTTAAGTTTA 57.094 29.630 0.00 0.00 37.44 2.01
2038 4849 6.952083 CAGTTTAAGTTTAATTCGAGGCGTAC 59.048 38.462 0.00 0.00 0.00 3.67
2042 4853 4.563061 AGTTTAATTCGAGGCGTACAAGT 58.437 39.130 0.00 0.00 0.00 3.16
2094 4905 7.675161 ATCATTTACTTAATGGAAAAGGGGG 57.325 36.000 0.00 0.00 43.19 5.40
2098 4909 6.921486 TTACTTAATGGAAAAGGGGGAAAC 57.079 37.500 0.00 0.00 0.00 2.78
2122 4934 6.127054 ACCTATGAGATGCTTGTTGCTAGTTA 60.127 38.462 0.00 0.00 43.37 2.24
2123 4935 6.423302 CCTATGAGATGCTTGTTGCTAGTTAG 59.577 42.308 0.00 0.00 43.37 2.34
2124 4936 4.507710 TGAGATGCTTGTTGCTAGTTAGG 58.492 43.478 0.00 0.00 43.37 2.69
2125 4937 4.222810 TGAGATGCTTGTTGCTAGTTAGGA 59.777 41.667 0.00 0.00 43.37 2.94
2126 4938 4.764172 AGATGCTTGTTGCTAGTTAGGAG 58.236 43.478 0.00 0.00 43.37 3.69
2159 4971 2.273557 GCCTAATGTGCCAATGCTTTG 58.726 47.619 5.37 5.37 38.71 2.77
2199 5011 0.738389 AACAGAGGTTTTGTGGCACG 59.262 50.000 13.77 0.00 31.83 5.34
2204 5016 0.395173 AGGTTTTGTGGCACGACCTT 60.395 50.000 25.32 14.71 37.44 3.50
2205 5017 1.134037 AGGTTTTGTGGCACGACCTTA 60.134 47.619 25.32 3.95 37.44 2.69
2225 5037 8.809468 ACCTTACCTGAATTAATTCTTCTTCC 57.191 34.615 24.77 2.38 37.67 3.46
2260 5073 8.225603 ACAGTTTCTAAAACAATCACATGTCT 57.774 30.769 0.00 0.00 31.81 3.41
2311 5124 2.489938 TGGTGATCTTTGCTGGTACC 57.510 50.000 4.43 4.43 0.00 3.34
2352 5165 8.556213 TTCTACTTTGTGTAAGTGAGTTTGTT 57.444 30.769 0.00 0.00 46.46 2.83
2394 5229 3.364441 TGTGCATTGGCTGGCGTC 61.364 61.111 0.00 0.00 41.91 5.19
2401 5236 1.589716 ATTGGCTGGCGTCTCTTTGC 61.590 55.000 0.00 0.00 0.00 3.68
2615 5451 1.526575 CGGGCATGCAGAAAACCAGT 61.527 55.000 21.36 0.00 0.00 4.00
2616 5452 0.037975 GGGCATGCAGAAAACCAGTG 60.038 55.000 21.36 0.00 0.00 3.66
2617 5453 0.961019 GGCATGCAGAAAACCAGTGA 59.039 50.000 21.36 0.00 0.00 3.41
2618 5454 1.068055 GGCATGCAGAAAACCAGTGAG 60.068 52.381 21.36 0.00 0.00 3.51
2619 5455 1.610522 GCATGCAGAAAACCAGTGAGT 59.389 47.619 14.21 0.00 0.00 3.41
2620 5456 2.035066 GCATGCAGAAAACCAGTGAGTT 59.965 45.455 14.21 0.00 0.00 3.01
2621 5457 3.854784 GCATGCAGAAAACCAGTGAGTTC 60.855 47.826 14.21 0.00 0.00 3.01
2672 5527 2.902419 CGTGATGTTGGGCAACGCA 61.902 57.895 0.00 0.00 43.94 5.24
2685 5540 1.967762 CAACGCAATTGCTGTGGTAG 58.032 50.000 26.86 12.61 40.06 3.18
2697 5552 2.159085 GCTGTGGTAGATTAGCTTCGGT 60.159 50.000 0.00 0.00 33.53 4.69
2698 5553 3.679083 GCTGTGGTAGATTAGCTTCGGTT 60.679 47.826 0.00 0.00 33.53 4.44
2699 5554 4.504858 CTGTGGTAGATTAGCTTCGGTTT 58.495 43.478 0.00 0.00 0.00 3.27
2700 5555 4.250464 TGTGGTAGATTAGCTTCGGTTTG 58.750 43.478 0.00 0.00 0.00 2.93
2701 5556 4.020928 TGTGGTAGATTAGCTTCGGTTTGA 60.021 41.667 0.00 0.00 0.00 2.69
2702 5557 4.567159 GTGGTAGATTAGCTTCGGTTTGAG 59.433 45.833 0.00 0.00 0.00 3.02
2703 5558 3.556365 GGTAGATTAGCTTCGGTTTGAGC 59.444 47.826 0.00 0.00 0.00 4.26
2704 5559 2.633488 AGATTAGCTTCGGTTTGAGCC 58.367 47.619 0.00 0.00 0.00 4.70
2708 5563 0.954452 AGCTTCGGTTTGAGCCTTTG 59.046 50.000 0.00 0.00 0.00 2.77
2751 5606 3.717707 TGCATATGAGCGTAGTTCTTCC 58.282 45.455 6.97 0.00 39.00 3.46
2793 5648 4.025040 TCATTTCTTGTGCTCCAGTGAT 57.975 40.909 0.00 0.00 0.00 3.06
2810 5665 4.009675 AGTGATTATTCCTTGCAAAGCGA 58.990 39.130 0.00 0.00 44.44 4.93
2828 5690 1.806542 CGATGTGCTGCTGTACCTTTT 59.193 47.619 9.22 0.00 0.00 2.27
2869 5731 5.485662 AATAAAATGCCGAAGCTACTCAC 57.514 39.130 0.00 0.00 40.80 3.51
2874 5758 0.528470 GCCGAAGCTACTCACACTCT 59.472 55.000 0.00 0.00 35.50 3.24
2875 5759 1.734047 GCCGAAGCTACTCACACTCTG 60.734 57.143 0.00 0.00 35.50 3.35
2883 5767 6.537453 AGCTACTCACACTCTGTTTCATAT 57.463 37.500 0.00 0.00 0.00 1.78
2888 5772 9.862371 CTACTCACACTCTGTTTCATATTACTT 57.138 33.333 0.00 0.00 0.00 2.24
2890 5774 9.862371 ACTCACACTCTGTTTCATATTACTTAG 57.138 33.333 0.00 0.00 0.00 2.18
2891 5775 8.703604 TCACACTCTGTTTCATATTACTTAGC 57.296 34.615 0.00 0.00 0.00 3.09
2892 5776 8.311109 TCACACTCTGTTTCATATTACTTAGCA 58.689 33.333 0.00 0.00 0.00 3.49
2893 5777 8.935844 CACACTCTGTTTCATATTACTTAGCAA 58.064 33.333 0.00 0.00 0.00 3.91
2894 5778 9.502091 ACACTCTGTTTCATATTACTTAGCAAA 57.498 29.630 0.00 0.00 0.00 3.68
2921 5880 9.657121 TTGCTTTTGTTTTTAAGTCAAACTTTG 57.343 25.926 0.00 0.00 39.51 2.77
3054 6065 6.258287 TCAAACTTCACAAAAGAATGGCATTG 59.742 34.615 19.07 6.85 0.00 2.82
3150 6176 2.079158 AGGTGCACTGTCGATTTCATG 58.921 47.619 17.98 0.00 0.00 3.07
3157 6600 5.521372 TGCACTGTCGATTTCATGAAGATAG 59.479 40.000 8.41 12.19 0.00 2.08
3162 6605 7.824289 ACTGTCGATTTCATGAAGATAGGAAAA 59.176 33.333 18.10 0.41 34.53 2.29
3165 6608 6.823182 TCGATTTCATGAAGATAGGAAAAGCA 59.177 34.615 8.41 0.00 34.53 3.91
3174 6617 8.006298 TGAAGATAGGAAAAGCAAAAACAGAA 57.994 30.769 0.00 0.00 0.00 3.02
3177 6620 7.381323 AGATAGGAAAAGCAAAAACAGAATGG 58.619 34.615 0.00 0.00 43.62 3.16
3183 6626 2.699846 AGCAAAAACAGAATGGCCTGAA 59.300 40.909 3.32 0.00 43.62 3.02
3184 6627 3.134442 AGCAAAAACAGAATGGCCTGAAA 59.866 39.130 3.32 0.00 43.62 2.69
3185 6628 3.248363 GCAAAAACAGAATGGCCTGAAAC 59.752 43.478 3.32 0.00 43.62 2.78
3186 6629 4.696455 CAAAAACAGAATGGCCTGAAACT 58.304 39.130 3.32 0.00 43.62 2.66
3187 6630 5.738783 GCAAAAACAGAATGGCCTGAAACTA 60.739 40.000 3.32 0.00 43.62 2.24
3189 6632 3.356529 ACAGAATGGCCTGAAACTAGG 57.643 47.619 3.32 0.00 43.62 3.02
3199 6642 3.486383 CCTGAAACTAGGCTGAAAACCA 58.514 45.455 0.00 0.00 0.00 3.67
3200 6643 4.082125 CCTGAAACTAGGCTGAAAACCAT 58.918 43.478 0.00 0.00 0.00 3.55
3201 6644 5.253330 CCTGAAACTAGGCTGAAAACCATA 58.747 41.667 0.00 0.00 0.00 2.74
3209 6657 3.317993 AGGCTGAAAACCATACAACACAC 59.682 43.478 0.00 0.00 0.00 3.82
3227 6675 3.623060 CACACGATTGATTAAGGGACCAG 59.377 47.826 0.00 0.00 0.00 4.00
3228 6676 3.517901 ACACGATTGATTAAGGGACCAGA 59.482 43.478 0.00 0.00 0.00 3.86
3235 6683 3.073798 TGATTAAGGGACCAGAGTGCAAA 59.926 43.478 0.00 0.00 35.71 3.68
3236 6684 3.586470 TTAAGGGACCAGAGTGCAAAA 57.414 42.857 0.00 0.00 35.71 2.44
3237 6685 1.986882 AAGGGACCAGAGTGCAAAAG 58.013 50.000 0.00 0.00 35.71 2.27
3251 6699 1.873486 GCAAAAGCCCACAACCATGTC 60.873 52.381 0.00 0.00 37.82 3.06
3257 6705 1.086696 CCCACAACCATGTCGACATC 58.913 55.000 27.79 0.00 37.82 3.06
3276 6724 1.939934 TCAGCCAACTCAAACTTCACG 59.060 47.619 0.00 0.00 0.00 4.35
3286 6734 2.428890 TCAAACTTCACGGCCAACATTT 59.571 40.909 2.24 0.00 0.00 2.32
3297 6745 1.323412 CCAACATTTCCGACAACCCA 58.677 50.000 0.00 0.00 0.00 4.51
3308 6756 1.813513 GACAACCCAGAGATGTGTGG 58.186 55.000 0.00 0.00 36.83 4.17
3315 6763 0.612229 CAGAGATGTGTGGGTGAGCT 59.388 55.000 0.00 0.00 0.00 4.09
3338 6786 4.704833 GAGACGCCTGCAAGCCCA 62.705 66.667 0.71 0.00 0.00 5.36
3339 6787 4.711949 AGACGCCTGCAAGCCCAG 62.712 66.667 0.71 0.00 0.00 4.45
3340 6788 4.704833 GACGCCTGCAAGCCCAGA 62.705 66.667 0.71 0.00 34.77 3.86
3341 6789 4.711949 ACGCCTGCAAGCCCAGAG 62.712 66.667 0.71 0.00 34.77 3.35
3342 6790 4.399395 CGCCTGCAAGCCCAGAGA 62.399 66.667 0.71 0.00 34.77 3.10
3343 6791 2.274760 GCCTGCAAGCCCAGAGAT 59.725 61.111 0.00 0.00 34.77 2.75
3344 6792 2.119655 GCCTGCAAGCCCAGAGATG 61.120 63.158 0.00 0.00 34.77 2.90
3345 6793 1.302285 CCTGCAAGCCCAGAGATGT 59.698 57.895 0.00 0.00 34.77 3.06
3346 6794 1.030488 CCTGCAAGCCCAGAGATGTG 61.030 60.000 0.00 0.00 34.77 3.21
3347 6795 0.322277 CTGCAAGCCCAGAGATGTGT 60.322 55.000 0.00 0.00 34.77 3.72
3348 6796 0.607217 TGCAAGCCCAGAGATGTGTG 60.607 55.000 0.00 0.00 0.00 3.82
3349 6797 1.310933 GCAAGCCCAGAGATGTGTGG 61.311 60.000 0.00 0.00 36.83 4.17
3354 6802 3.849002 CCAGAGATGTGTGGGTGAG 57.151 57.895 0.00 0.00 33.20 3.51
3355 6803 0.392193 CCAGAGATGTGTGGGTGAGC 60.392 60.000 0.00 0.00 33.20 4.26
3356 6804 0.612229 CAGAGATGTGTGGGTGAGCT 59.388 55.000 0.00 0.00 0.00 4.09
3357 6805 0.901124 AGAGATGTGTGGGTGAGCTC 59.099 55.000 6.82 6.82 0.00 4.09
3358 6806 0.901124 GAGATGTGTGGGTGAGCTCT 59.099 55.000 16.19 0.00 0.00 4.09
3359 6807 1.277557 GAGATGTGTGGGTGAGCTCTT 59.722 52.381 16.19 0.00 0.00 2.85
3360 6808 1.277557 AGATGTGTGGGTGAGCTCTTC 59.722 52.381 16.19 8.05 0.00 2.87
3361 6809 0.036952 ATGTGTGGGTGAGCTCTTCG 60.037 55.000 16.19 0.00 0.00 3.79
3362 6810 1.374758 GTGTGGGTGAGCTCTTCGG 60.375 63.158 16.19 0.00 0.00 4.30
3363 6811 1.533033 TGTGGGTGAGCTCTTCGGA 60.533 57.895 16.19 0.00 0.00 4.55
3364 6812 1.216710 GTGGGTGAGCTCTTCGGAG 59.783 63.158 16.19 0.00 44.45 4.63
3365 6813 1.076727 TGGGTGAGCTCTTCGGAGA 59.923 57.895 16.19 0.00 44.41 3.71
3366 6814 1.251527 TGGGTGAGCTCTTCGGAGAC 61.252 60.000 16.19 2.20 44.41 3.36
3379 6827 4.704833 GAGACGCCTGCAAGCCCA 62.705 66.667 0.71 0.00 0.00 5.36
3380 6828 4.711949 AGACGCCTGCAAGCCCAG 62.712 66.667 0.71 0.00 0.00 4.45
3381 6829 4.704833 GACGCCTGCAAGCCCAGA 62.705 66.667 0.71 0.00 34.77 3.86
3382 6830 4.711949 ACGCCTGCAAGCCCAGAG 62.712 66.667 0.71 0.00 34.77 3.35
3383 6831 4.399395 CGCCTGCAAGCCCAGAGA 62.399 66.667 0.71 0.00 34.77 3.10
3384 6832 2.274760 GCCTGCAAGCCCAGAGAT 59.725 61.111 0.00 0.00 34.77 2.75
3385 6833 2.119655 GCCTGCAAGCCCAGAGATG 61.120 63.158 0.00 0.00 34.77 2.90
3386 6834 1.302285 CCTGCAAGCCCAGAGATGT 59.698 57.895 0.00 0.00 34.77 3.06
3387 6835 1.030488 CCTGCAAGCCCAGAGATGTG 61.030 60.000 0.00 0.00 34.77 3.21
3388 6836 0.322277 CTGCAAGCCCAGAGATGTGT 60.322 55.000 0.00 0.00 34.77 3.72
3389 6837 0.607217 TGCAAGCCCAGAGATGTGTG 60.607 55.000 0.00 0.00 0.00 3.82
3390 6838 1.310933 GCAAGCCCAGAGATGTGTGG 61.311 60.000 0.00 0.00 36.83 4.17
3395 6843 3.849002 CCAGAGATGTGTGGGTGAG 57.151 57.895 0.00 0.00 33.20 3.51
3396 6844 0.392193 CCAGAGATGTGTGGGTGAGC 60.392 60.000 0.00 0.00 33.20 4.26
3397 6845 0.612229 CAGAGATGTGTGGGTGAGCT 59.388 55.000 0.00 0.00 0.00 4.09
3398 6846 0.901124 AGAGATGTGTGGGTGAGCTC 59.099 55.000 6.82 6.82 0.00 4.09
3399 6847 0.901124 GAGATGTGTGGGTGAGCTCT 59.099 55.000 16.19 0.00 0.00 4.09
3400 6848 1.277557 GAGATGTGTGGGTGAGCTCTT 59.722 52.381 16.19 0.00 0.00 2.85
3401 6849 1.277557 AGATGTGTGGGTGAGCTCTTC 59.722 52.381 16.19 8.05 0.00 2.87
3402 6850 0.036952 ATGTGTGGGTGAGCTCTTCG 60.037 55.000 16.19 0.00 0.00 3.79
3403 6851 1.374758 GTGTGGGTGAGCTCTTCGG 60.375 63.158 16.19 0.00 0.00 4.30
3404 6852 1.533033 TGTGGGTGAGCTCTTCGGA 60.533 57.895 16.19 0.00 0.00 4.55
3405 6853 1.216710 GTGGGTGAGCTCTTCGGAG 59.783 63.158 16.19 0.00 44.45 4.63
3406 6854 1.076727 TGGGTGAGCTCTTCGGAGA 59.923 57.895 16.19 0.00 44.41 3.71
3407 6855 1.251527 TGGGTGAGCTCTTCGGAGAC 61.252 60.000 16.19 2.20 44.41 3.36
3448 6951 4.008933 GCCACCCACACGAGCTCT 62.009 66.667 12.85 0.00 0.00 4.09
3463 6966 1.838077 AGCTCTGCCGGTTTTACCTAT 59.162 47.619 1.90 0.00 35.66 2.57
3502 7581 7.017498 TCACGCATTTGTCTAGTTTTACAAA 57.983 32.000 9.21 9.21 46.37 2.83
3530 7609 9.578576 AACTACAGAATAATGACAATATGCCAT 57.421 29.630 0.00 0.00 0.00 4.40
3545 7624 7.437862 ACAATATGCCATTTAAATAAACCGCAG 59.562 33.333 0.00 4.47 36.56 5.18
3566 7645 1.611977 GGCAAACCCAAGTGAGGTAAC 59.388 52.381 0.00 0.00 36.27 2.50
3571 7650 5.288804 CAAACCCAAGTGAGGTAACAATTG 58.711 41.667 3.24 3.24 42.76 2.32
3572 7651 4.447138 ACCCAAGTGAGGTAACAATTGA 57.553 40.909 13.59 0.00 44.85 2.57
3595 7681 3.270027 TGATTTATGCCGGTCTGTTGAG 58.730 45.455 1.90 0.00 0.00 3.02
3600 7686 0.247460 TGCCGGTCTGTTGAGATCTG 59.753 55.000 0.00 0.00 0.00 2.90
3602 7688 1.338200 GCCGGTCTGTTGAGATCTGTT 60.338 52.381 0.00 0.00 0.00 3.16
3604 7690 1.728971 CGGTCTGTTGAGATCTGTTGC 59.271 52.381 0.00 0.00 0.00 4.17
3607 7693 2.999355 GTCTGTTGAGATCTGTTGCTCC 59.001 50.000 0.00 0.00 0.00 4.70
3638 7724 2.562738 ACCCAAGTGAGGCTAAATTTGC 59.437 45.455 0.00 2.63 0.00 3.68
3641 7727 3.367703 CCAAGTGAGGCTAAATTTGCTGG 60.368 47.826 0.00 2.27 0.00 4.85
3642 7728 3.439857 AGTGAGGCTAAATTTGCTGGA 57.560 42.857 0.00 0.00 0.00 3.86
3648 7734 1.401905 GCTAAATTTGCTGGAGGGTCG 59.598 52.381 0.00 0.00 0.00 4.79
3663 7749 1.513586 GTCGTTCTGCCGACGGTAG 60.514 63.158 24.34 24.34 46.47 3.18
3675 7761 1.401931 CGACGGTAGTGGTTGTTCGAT 60.402 52.381 0.00 0.00 0.00 3.59
3677 7763 1.337447 ACGGTAGTGGTTGTTCGATGG 60.337 52.381 0.00 0.00 0.00 3.51
3678 7764 1.084289 GGTAGTGGTTGTTCGATGGC 58.916 55.000 0.00 0.00 0.00 4.40
3690 7776 3.551407 GATGGCCGAGGGACCTCC 61.551 72.222 12.54 0.36 39.77 4.30
3758 7845 9.778741 ATGAAGTTTTCTATATAGCGGATTCAA 57.221 29.630 4.75 0.00 0.00 2.69
3815 8621 0.450184 ATTTTTGTTCCCGCCGATCG 59.550 50.000 8.51 8.51 38.08 3.69
3832 8638 0.035317 TCGGTTGAGATGTGCTGCTT 59.965 50.000 0.00 0.00 0.00 3.91
3860 8677 0.179100 CACGATCCACGCATCCTCTT 60.179 55.000 0.00 0.00 46.94 2.85
3861 8678 0.179100 ACGATCCACGCATCCTCTTG 60.179 55.000 0.00 0.00 46.94 3.02
3865 8682 1.450312 CCACGCATCCTCTTGGTCC 60.450 63.158 0.00 0.00 34.23 4.46
3866 8683 1.296392 CACGCATCCTCTTGGTCCA 59.704 57.895 0.00 0.00 34.23 4.02
3868 8685 1.194781 ACGCATCCTCTTGGTCCACT 61.195 55.000 0.00 0.00 34.23 4.00
3869 8686 0.460987 CGCATCCTCTTGGTCCACTC 60.461 60.000 0.00 0.00 34.23 3.51
3870 8687 0.460987 GCATCCTCTTGGTCCACTCG 60.461 60.000 0.00 0.00 34.23 4.18
3904 8732 2.743928 GCACTTGTCCCAGAGCCG 60.744 66.667 0.00 0.00 0.00 5.52
3951 8779 0.936297 GCCAGAAACAAACAGCAGCG 60.936 55.000 0.00 0.00 0.00 5.18
4041 8883 1.592223 CGTCCCTCCCTCTGACAAC 59.408 63.158 0.00 0.00 0.00 3.32
4169 9021 2.116366 CTTTCGCCTTTCGGTTTTGTG 58.884 47.619 0.00 0.00 39.05 3.33
4192 9044 2.335369 GGACGGACGGATCCATCG 59.665 66.667 13.41 13.96 46.67 3.84
4253 9123 3.751246 CAGTGGCAATGGCGGGTG 61.751 66.667 7.12 0.00 42.47 4.61
4284 9154 0.670854 GAAGAAGACAGGCCGTGACC 60.671 60.000 4.94 0.00 0.00 4.02
4370 9254 8.462016 GGTTCAGTAAAAGATTAGATGTGCATT 58.538 33.333 0.00 0.00 0.00 3.56
4390 9274 4.621068 TTCTTGCTTGAGTTTGACAGTG 57.379 40.909 0.00 0.00 0.00 3.66
4391 9275 3.872696 TCTTGCTTGAGTTTGACAGTGA 58.127 40.909 0.00 0.00 0.00 3.41
4392 9276 4.454678 TCTTGCTTGAGTTTGACAGTGAT 58.545 39.130 0.00 0.00 0.00 3.06
4393 9277 4.512944 TCTTGCTTGAGTTTGACAGTGATC 59.487 41.667 0.00 0.00 0.00 2.92
4397 9281 4.435253 GCTTGAGTTTGACAGTGATCGATG 60.435 45.833 0.54 0.00 0.00 3.84
4411 9295 2.111878 GATGGATGGTCCTGCGGG 59.888 66.667 4.71 4.71 37.46 6.13
4412 9296 2.366837 ATGGATGGTCCTGCGGGA 60.367 61.111 11.27 11.27 37.46 5.14
4413 9297 2.388890 GATGGATGGTCCTGCGGGAG 62.389 65.000 16.70 0.00 43.12 4.30
4431 9315 2.432146 GGAGGAATTTTGCAGGGATTCC 59.568 50.000 21.16 21.16 45.87 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.574955 GGCTCGGACACTGGTCAGT 61.575 63.158 0.00 0.00 46.17 3.41
27 28 2.501723 TGAAACTCTGGACTATCAGGCC 59.498 50.000 0.00 0.00 46.38 5.19
83 84 0.606673 GCTCTCCCAGTTCCACAACC 60.607 60.000 0.00 0.00 32.22 3.77
123 124 4.593206 TCACCTGAAACAGTCCAGAATAGT 59.407 41.667 4.85 0.00 32.37 2.12
403 409 4.464947 ACATAAGCCAGGCTTCTTATTCC 58.535 43.478 30.82 0.00 46.77 3.01
644 654 3.057736 CGCACGGGTACTATGCTAGTATT 60.058 47.826 0.00 0.00 42.68 1.89
699 709 9.880157 CATTTGACAAATCCTTATCCTCATTTT 57.120 29.630 10.52 0.00 0.00 1.82
701 711 8.827832 TCATTTGACAAATCCTTATCCTCATT 57.172 30.769 10.52 0.00 0.00 2.57
702 712 7.504911 CCTCATTTGACAAATCCTTATCCTCAT 59.495 37.037 10.52 0.00 0.00 2.90
703 713 6.830324 CCTCATTTGACAAATCCTTATCCTCA 59.170 38.462 10.52 0.00 0.00 3.86
704 714 7.012799 GTCCTCATTTGACAAATCCTTATCCTC 59.987 40.741 10.52 0.00 32.91 3.71
705 715 6.830838 GTCCTCATTTGACAAATCCTTATCCT 59.169 38.462 10.52 0.00 32.91 3.24
706 716 6.603201 TGTCCTCATTTGACAAATCCTTATCC 59.397 38.462 10.52 0.00 39.66 2.59
707 717 7.415653 GGTGTCCTCATTTGACAAATCCTTATC 60.416 40.741 10.52 2.06 43.82 1.75
708 718 6.378280 GGTGTCCTCATTTGACAAATCCTTAT 59.622 38.462 10.52 0.00 43.82 1.73
709 719 5.710099 GGTGTCCTCATTTGACAAATCCTTA 59.290 40.000 10.52 0.00 43.82 2.69
710 720 4.524328 GGTGTCCTCATTTGACAAATCCTT 59.476 41.667 10.52 0.00 43.82 3.36
711 721 4.082125 GGTGTCCTCATTTGACAAATCCT 58.918 43.478 10.52 0.00 43.82 3.24
712 722 3.119849 CGGTGTCCTCATTTGACAAATCC 60.120 47.826 10.52 6.48 43.82 3.01
713 723 3.751175 TCGGTGTCCTCATTTGACAAATC 59.249 43.478 10.52 0.51 43.82 2.17
751 761 8.362464 ACTATCATGTTTACTCTAACTGGTCA 57.638 34.615 0.00 0.00 0.00 4.02
846 929 9.158233 TCCTACTTATAAAATTTCGAGTTGGTG 57.842 33.333 15.79 0.00 33.64 4.17
921 2579 8.747666 CCGTTTCGAAATATTTGAACTTGAAAA 58.252 29.630 14.69 0.00 0.00 2.29
923 2581 7.640852 TCCGTTTCGAAATATTTGAACTTGAA 58.359 30.769 14.69 0.00 0.00 2.69
924 2582 7.192148 TCCGTTTCGAAATATTTGAACTTGA 57.808 32.000 14.69 5.07 0.00 3.02
925 2583 6.523201 CCTCCGTTTCGAAATATTTGAACTTG 59.477 38.462 14.69 3.16 0.00 3.16
1009 3693 3.017442 TCACCGATTCGATCAGAGAGTT 58.983 45.455 7.83 0.00 0.00 3.01
1010 3694 2.356382 GTCACCGATTCGATCAGAGAGT 59.644 50.000 7.83 0.00 0.00 3.24
1017 3701 1.841450 GTGGAGTCACCGATTCGATC 58.159 55.000 7.83 0.00 42.61 3.69
1146 3840 1.908340 CTGGAGGGAGCTCACCTTGG 61.908 65.000 20.63 12.17 38.79 3.61
1177 3871 4.589216 CTAATGAGCAGAGAGAAGGAGG 57.411 50.000 0.00 0.00 0.00 4.30
1191 3889 1.674441 TGTACGTCTCGGGCTAATGAG 59.326 52.381 0.00 0.00 0.00 2.90
1292 3990 0.680061 CTGTATACGGCTCTTCCCCC 59.320 60.000 0.00 0.00 0.00 5.40
1338 4057 3.483869 CCTAGACCAGGGGGCTGC 61.484 72.222 0.00 0.00 43.53 5.25
1349 4068 4.832608 CCAACCCGGCGCCTAGAC 62.833 72.222 26.68 0.00 0.00 2.59
1360 4079 1.679898 CAGTGACCTCCTCCAACCC 59.320 63.158 0.00 0.00 0.00 4.11
1451 4181 4.404507 TCATTTTTCGAGAAAAGGAGCG 57.595 40.909 5.11 0.00 40.83 5.03
1475 4217 8.593679 TGGATCTCAACAATTCTAACTGAACTA 58.406 33.333 0.00 0.00 37.52 2.24
1527 4269 4.075793 ACTGGCTCCGGGCTCCTA 62.076 66.667 13.58 0.12 41.46 2.94
1540 4282 1.830587 TAGAGGTGGCAGTGCACTGG 61.831 60.000 39.92 25.25 43.94 4.00
1541 4283 0.035317 TTAGAGGTGGCAGTGCACTG 59.965 55.000 37.09 37.09 46.40 3.66
1542 4284 0.035458 GTTAGAGGTGGCAGTGCACT 59.965 55.000 15.25 15.25 0.00 4.40
1543 4285 0.955919 GGTTAGAGGTGGCAGTGCAC 60.956 60.000 18.61 9.40 0.00 4.57
1544 4286 1.374947 GGTTAGAGGTGGCAGTGCA 59.625 57.895 18.61 0.00 0.00 4.57
1545 4287 1.377333 GGGTTAGAGGTGGCAGTGC 60.377 63.158 6.55 6.55 0.00 4.40
1546 4288 1.079127 CGGGTTAGAGGTGGCAGTG 60.079 63.158 0.00 0.00 0.00 3.66
1547 4289 2.291043 CCGGGTTAGAGGTGGCAGT 61.291 63.158 0.00 0.00 0.00 4.40
1548 4290 1.961180 CTCCGGGTTAGAGGTGGCAG 61.961 65.000 0.00 0.00 0.00 4.85
1549 4291 1.987855 CTCCGGGTTAGAGGTGGCA 60.988 63.158 0.00 0.00 0.00 4.92
1550 4292 1.957765 GACTCCGGGTTAGAGGTGGC 61.958 65.000 0.00 0.00 35.58 5.01
1551 4293 1.328430 GGACTCCGGGTTAGAGGTGG 61.328 65.000 0.00 0.00 35.58 4.61
1552 4294 1.664321 CGGACTCCGGGTTAGAGGTG 61.664 65.000 9.85 0.00 44.15 4.00
1553 4295 1.379576 CGGACTCCGGGTTAGAGGT 60.380 63.158 9.85 0.00 44.15 3.85
1554 4296 3.522808 CGGACTCCGGGTTAGAGG 58.477 66.667 9.85 0.00 44.15 3.69
1564 4306 2.059541 CGTTTCTTCAGTTCGGACTCC 58.940 52.381 0.00 0.00 32.54 3.85
1565 4307 2.740452 ACGTTTCTTCAGTTCGGACTC 58.260 47.619 0.00 0.00 32.54 3.36
1566 4308 2.884894 ACGTTTCTTCAGTTCGGACT 57.115 45.000 0.00 0.00 36.25 3.85
1567 4309 3.554731 AGAAACGTTTCTTCAGTTCGGAC 59.445 43.478 32.60 8.36 44.70 4.79
1568 4310 3.554324 CAGAAACGTTTCTTCAGTTCGGA 59.446 43.478 34.94 0.00 44.70 4.55
1569 4311 3.308866 ACAGAAACGTTTCTTCAGTTCGG 59.691 43.478 34.94 24.19 44.70 4.30
1570 4312 4.516092 ACAGAAACGTTTCTTCAGTTCG 57.484 40.909 34.94 24.81 44.70 3.95
1571 4313 5.064834 AGGAACAGAAACGTTTCTTCAGTTC 59.935 40.000 35.94 35.94 44.70 3.01
1572 4314 4.941873 AGGAACAGAAACGTTTCTTCAGTT 59.058 37.500 34.94 32.16 44.70 3.16
1573 4315 4.514401 AGGAACAGAAACGTTTCTTCAGT 58.486 39.130 34.94 27.23 44.70 3.41
1613 4355 6.199393 GCTCGAAACAAAGTCTTGTAACAAT 58.801 36.000 0.00 0.00 45.25 2.71
1660 4417 0.817229 TGGCATTGACAGCAACGTGA 60.817 50.000 0.00 0.00 36.72 4.35
1661 4418 0.241749 ATGGCATTGACAGCAACGTG 59.758 50.000 0.00 0.00 36.72 4.49
1662 4419 0.523072 GATGGCATTGACAGCAACGT 59.477 50.000 2.11 0.00 36.72 3.99
1663 4420 0.806868 AGATGGCATTGACAGCAACG 59.193 50.000 10.90 0.00 36.72 4.10
1664 4421 2.029649 ACAAGATGGCATTGACAGCAAC 60.030 45.455 10.90 0.00 36.72 4.17
1665 4422 2.241160 ACAAGATGGCATTGACAGCAA 58.759 42.857 10.90 0.00 38.60 3.91
1666 4423 1.913778 ACAAGATGGCATTGACAGCA 58.086 45.000 10.90 0.00 24.06 4.41
1668 4425 5.048504 ACAAACTACAAGATGGCATTGACAG 60.049 40.000 0.00 3.90 0.00 3.51
1669 4426 4.826733 ACAAACTACAAGATGGCATTGACA 59.173 37.500 0.00 0.00 0.00 3.58
1670 4427 5.048782 TGACAAACTACAAGATGGCATTGAC 60.049 40.000 0.00 0.00 0.00 3.18
1671 4428 5.069318 TGACAAACTACAAGATGGCATTGA 58.931 37.500 0.00 0.00 0.00 2.57
1672 4429 5.181811 TCTGACAAACTACAAGATGGCATTG 59.818 40.000 0.00 0.00 28.81 2.82
1673 4430 5.316167 TCTGACAAACTACAAGATGGCATT 58.684 37.500 0.00 0.00 28.81 3.56
1674 4431 4.910195 TCTGACAAACTACAAGATGGCAT 58.090 39.130 0.00 0.00 28.81 4.40
1676 4433 3.686726 CCTCTGACAAACTACAAGATGGC 59.313 47.826 0.00 0.00 0.00 4.40
1677 4434 4.256920 CCCTCTGACAAACTACAAGATGG 58.743 47.826 0.00 0.00 0.00 3.51
1678 4435 4.899502 ACCCTCTGACAAACTACAAGATG 58.100 43.478 0.00 0.00 0.00 2.90
1679 4436 5.552178 GAACCCTCTGACAAACTACAAGAT 58.448 41.667 0.00 0.00 0.00 2.40
1680 4437 4.500887 CGAACCCTCTGACAAACTACAAGA 60.501 45.833 0.00 0.00 0.00 3.02
1681 4438 3.741344 CGAACCCTCTGACAAACTACAAG 59.259 47.826 0.00 0.00 0.00 3.16
1690 4447 1.475403 GGAGATCGAACCCTCTGACA 58.525 55.000 11.06 0.00 0.00 3.58
1694 4451 2.431954 TAACGGAGATCGAACCCTCT 57.568 50.000 11.06 0.00 42.43 3.69
1695 4452 3.729862 ATTAACGGAGATCGAACCCTC 57.270 47.619 0.00 0.00 42.43 4.30
1729 4494 3.844211 GCCATATACCAAGACCCCAGATA 59.156 47.826 0.00 0.00 0.00 1.98
1749 4514 1.099879 AGATTGGCAGCTTCATCGCC 61.100 55.000 5.08 5.08 46.43 5.54
1751 4516 1.530293 GCTAGATTGGCAGCTTCATCG 59.470 52.381 0.00 0.00 34.86 3.84
1798 4563 2.246719 ATAACAGATCGGCAGAAGGC 57.753 50.000 0.00 0.00 43.74 4.35
1826 4591 7.996385 ACCATAAAAATCAGTACCATAACAGC 58.004 34.615 0.00 0.00 0.00 4.40
1898 4699 1.949847 TAGAGCGCCAGTCTGCCTTC 61.950 60.000 2.29 0.00 0.00 3.46
1908 4709 2.988010 ATGAAATCAGTAGAGCGCCA 57.012 45.000 2.29 0.00 0.00 5.69
1912 4713 7.702772 TCGTTCTCTTAATGAAATCAGTAGAGC 59.297 37.037 11.41 2.13 29.96 4.09
1936 4737 5.869888 GGATAAATAATGGACCTGCTACTCG 59.130 44.000 0.00 0.00 0.00 4.18
1989 4790 4.662468 TCCTGCTGATATGAGTCTGAAC 57.338 45.455 0.00 0.00 0.00 3.18
1996 4797 7.714377 ACTTAAACTGAATCCTGCTGATATGAG 59.286 37.037 0.00 0.00 31.83 2.90
1999 4800 8.814038 AAACTTAAACTGAATCCTGCTGATAT 57.186 30.769 0.00 0.00 31.83 1.63
2000 4801 9.733556 TTAAACTTAAACTGAATCCTGCTGATA 57.266 29.630 0.00 0.00 31.83 2.15
2001 4802 8.635765 TTAAACTTAAACTGAATCCTGCTGAT 57.364 30.769 0.00 0.00 34.22 2.90
2025 4836 1.076332 GCACTTGTACGCCTCGAATT 58.924 50.000 0.00 0.00 0.00 2.17
2038 4849 7.112426 GCAAAAGCTGATTTTAAATTGCACTTG 59.888 33.333 3.03 15.74 39.11 3.16
2042 4853 6.864360 AGCAAAAGCTGATTTTAAATTGCA 57.136 29.167 16.77 4.14 39.11 4.08
2083 4894 2.997463 TCATAGGTTTCCCCCTTTTCCA 59.003 45.455 0.00 0.00 35.97 3.53
2089 4900 1.777272 GCATCTCATAGGTTTCCCCCT 59.223 52.381 0.00 0.00 38.70 4.79
2094 4905 4.666237 GCAACAAGCATCTCATAGGTTTC 58.334 43.478 0.00 0.00 44.79 2.78
2123 4935 1.501582 AGGCCATCAGAAGGTACTCC 58.498 55.000 5.01 0.00 38.49 3.85
2124 4936 4.101741 ACATTAGGCCATCAGAAGGTACTC 59.898 45.833 5.01 0.00 38.49 2.59
2126 4938 4.130118 CACATTAGGCCATCAGAAGGTAC 58.870 47.826 5.01 0.00 0.00 3.34
2159 4971 6.837992 TGTTTTCCTTTGAACGTGATATAGC 58.162 36.000 0.00 0.00 0.00 2.97
2199 5011 8.894731 GGAAGAAGAATTAATTCAGGTAAGGTC 58.105 37.037 26.02 13.18 39.23 3.85
2311 5124 0.181350 AGAAGGGAAATGCTAGGCCG 59.819 55.000 0.00 0.00 0.00 6.13
2352 5165 5.489792 ACCAGTGCTAGAAAGATGAGAAA 57.510 39.130 0.00 0.00 0.00 2.52
2394 5229 6.436843 AATGGATAAAGGTTACGCAAAGAG 57.563 37.500 0.00 0.00 0.00 2.85
2401 5236 6.261603 GGGGTAAGAAATGGATAAAGGTTACG 59.738 42.308 0.00 0.00 0.00 3.18
2616 5452 1.694696 ACAGGGTTCCACTCAGAACTC 59.305 52.381 4.58 0.46 45.89 3.01
2617 5453 1.807814 ACAGGGTTCCACTCAGAACT 58.192 50.000 4.58 0.00 44.56 3.01
2618 5454 3.764237 TTACAGGGTTCCACTCAGAAC 57.236 47.619 0.00 0.00 44.45 3.01
2619 5455 3.650942 ACATTACAGGGTTCCACTCAGAA 59.349 43.478 0.00 0.00 0.00 3.02
2620 5456 3.248024 ACATTACAGGGTTCCACTCAGA 58.752 45.455 0.00 0.00 0.00 3.27
2621 5457 3.703001 ACATTACAGGGTTCCACTCAG 57.297 47.619 0.00 0.00 0.00 3.35
2672 5527 4.572389 CGAAGCTAATCTACCACAGCAATT 59.428 41.667 0.00 0.00 36.47 2.32
2678 5533 4.020928 TCAAACCGAAGCTAATCTACCACA 60.021 41.667 0.00 0.00 0.00 4.17
2682 5537 3.556365 GGCTCAAACCGAAGCTAATCTAC 59.444 47.826 0.00 0.00 0.00 2.59
2683 5538 3.451178 AGGCTCAAACCGAAGCTAATCTA 59.549 43.478 0.00 0.00 33.69 1.98
2684 5539 2.237392 AGGCTCAAACCGAAGCTAATCT 59.763 45.455 0.00 0.00 33.69 2.40
2685 5540 2.633488 AGGCTCAAACCGAAGCTAATC 58.367 47.619 0.00 0.00 33.69 1.75
2697 5552 4.278170 CACATAACACCTCAAAGGCTCAAA 59.722 41.667 0.00 0.00 39.63 2.69
2698 5553 3.820467 CACATAACACCTCAAAGGCTCAA 59.180 43.478 0.00 0.00 39.63 3.02
2699 5554 3.411446 CACATAACACCTCAAAGGCTCA 58.589 45.455 0.00 0.00 39.63 4.26
2700 5555 2.162408 GCACATAACACCTCAAAGGCTC 59.838 50.000 0.00 0.00 39.63 4.70
2701 5556 2.162681 GCACATAACACCTCAAAGGCT 58.837 47.619 0.00 0.00 39.63 4.58
2702 5557 1.885887 TGCACATAACACCTCAAAGGC 59.114 47.619 0.00 0.00 39.63 4.35
2703 5558 3.411446 TCTGCACATAACACCTCAAAGG 58.589 45.455 0.00 0.00 42.49 3.11
2704 5559 4.275689 TGTTCTGCACATAACACCTCAAAG 59.724 41.667 0.00 0.00 30.88 2.77
2708 5563 3.813529 GTGTTCTGCACATAACACCTC 57.186 47.619 16.83 0.00 46.22 3.85
2751 5606 3.878086 TCAAAAGCGCTTACAGTTCAG 57.122 42.857 25.33 7.33 0.00 3.02
2793 5648 3.673052 GCACATCGCTTTGCAAGGAATAA 60.673 43.478 13.48 0.00 38.68 1.40
2845 5707 6.596106 TGTGAGTAGCTTCGGCATTTTATTTA 59.404 34.615 0.00 0.00 44.74 1.40
2856 5718 1.542030 ACAGAGTGTGAGTAGCTTCGG 59.458 52.381 0.00 0.00 0.00 4.30
2858 5720 4.621991 TGAAACAGAGTGTGAGTAGCTTC 58.378 43.478 0.00 0.00 0.00 3.86
2897 5781 9.101971 CACAAAGTTTGACTTAAAAACAAAAGC 57.898 29.630 22.23 0.00 37.47 3.51
2911 5870 8.871686 ATAAATTTGGTCTCACAAAGTTTGAC 57.128 30.769 22.23 9.35 43.49 3.18
3022 6032 9.734620 CATTCTTTTGTGAAGTTTGATCAGTTA 57.265 29.630 0.00 0.00 0.00 2.24
3028 6038 5.916318 TGCCATTCTTTTGTGAAGTTTGAT 58.084 33.333 0.00 0.00 0.00 2.57
3113 6139 1.761784 ACCTGCCTTGCACATGAAAAA 59.238 42.857 0.00 0.00 33.79 1.94
3131 6157 2.076100 TCATGAAATCGACAGTGCACC 58.924 47.619 14.63 0.00 0.00 5.01
3150 6176 8.919661 CATTCTGTTTTTGCTTTTCCTATCTTC 58.080 33.333 0.00 0.00 0.00 2.87
3157 6600 3.250762 GGCCATTCTGTTTTTGCTTTTCC 59.749 43.478 0.00 0.00 0.00 3.13
3162 6605 2.318908 TCAGGCCATTCTGTTTTTGCT 58.681 42.857 5.01 0.00 36.25 3.91
3165 6608 5.011023 CCTAGTTTCAGGCCATTCTGTTTTT 59.989 40.000 5.01 0.00 36.25 1.94
3169 6612 3.356529 CCTAGTTTCAGGCCATTCTGT 57.643 47.619 5.01 0.00 36.25 3.41
3183 6626 5.240844 GTGTTGTATGGTTTTCAGCCTAGTT 59.759 40.000 0.00 0.00 0.00 2.24
3184 6627 4.760204 GTGTTGTATGGTTTTCAGCCTAGT 59.240 41.667 0.00 0.00 0.00 2.57
3185 6628 4.759693 TGTGTTGTATGGTTTTCAGCCTAG 59.240 41.667 0.00 0.00 0.00 3.02
3186 6629 4.517453 GTGTGTTGTATGGTTTTCAGCCTA 59.483 41.667 0.00 0.00 0.00 3.93
3187 6630 3.317993 GTGTGTTGTATGGTTTTCAGCCT 59.682 43.478 0.00 0.00 0.00 4.58
3189 6632 3.002862 TCGTGTGTTGTATGGTTTTCAGC 59.997 43.478 0.00 0.00 0.00 4.26
3191 6634 5.297029 TCAATCGTGTGTTGTATGGTTTTCA 59.703 36.000 0.00 0.00 0.00 2.69
3192 6635 5.753744 TCAATCGTGTGTTGTATGGTTTTC 58.246 37.500 0.00 0.00 0.00 2.29
3196 6639 6.093495 CCTTAATCAATCGTGTGTTGTATGGT 59.907 38.462 0.00 0.00 0.00 3.55
3197 6640 6.458206 CCCTTAATCAATCGTGTGTTGTATGG 60.458 42.308 0.00 0.00 0.00 2.74
3198 6641 6.315144 TCCCTTAATCAATCGTGTGTTGTATG 59.685 38.462 0.00 0.00 0.00 2.39
3199 6642 6.315393 GTCCCTTAATCAATCGTGTGTTGTAT 59.685 38.462 0.00 0.00 0.00 2.29
3200 6643 5.640357 GTCCCTTAATCAATCGTGTGTTGTA 59.360 40.000 0.00 0.00 0.00 2.41
3201 6644 4.454504 GTCCCTTAATCAATCGTGTGTTGT 59.545 41.667 0.00 0.00 0.00 3.32
3209 6657 4.122776 CACTCTGGTCCCTTAATCAATCG 58.877 47.826 0.00 0.00 0.00 3.34
3235 6683 0.889186 GTCGACATGGTTGTGGGCTT 60.889 55.000 11.55 0.00 35.79 4.35
3236 6684 1.302511 GTCGACATGGTTGTGGGCT 60.303 57.895 11.55 0.00 35.79 5.19
3237 6685 0.960364 ATGTCGACATGGTTGTGGGC 60.960 55.000 29.49 0.00 36.79 5.36
3251 6699 2.146342 AGTTTGAGTTGGCTGATGTCG 58.854 47.619 0.00 0.00 0.00 4.35
3257 6705 1.002468 CCGTGAAGTTTGAGTTGGCTG 60.002 52.381 0.00 0.00 0.00 4.85
3276 6724 0.038618 GGTTGTCGGAAATGTTGGCC 60.039 55.000 0.00 0.00 0.00 5.36
3286 6734 0.608130 CACATCTCTGGGTTGTCGGA 59.392 55.000 0.00 0.00 0.00 4.55
3289 6737 1.611673 CCCACACATCTCTGGGTTGTC 60.612 57.143 0.00 0.00 42.21 3.18
3297 6745 0.901124 GAGCTCACCCACACATCTCT 59.099 55.000 9.40 0.00 0.00 3.10
3308 6756 1.137825 CGTCTCCGAAGAGCTCACC 59.862 63.158 17.77 5.88 40.22 4.02
3315 6763 2.492449 CTTGCAGGCGTCTCCGAAGA 62.492 60.000 0.00 0.00 40.77 2.87
3329 6777 0.607217 CACACATCTCTGGGCTTGCA 60.607 55.000 0.00 0.00 0.00 4.08
3330 6778 1.310933 CCACACATCTCTGGGCTTGC 61.311 60.000 0.00 0.00 0.00 4.01
3331 6779 0.679002 CCCACACATCTCTGGGCTTG 60.679 60.000 0.00 0.00 40.95 4.01
3332 6780 1.687612 CCCACACATCTCTGGGCTT 59.312 57.895 0.00 0.00 40.95 4.35
3333 6781 3.408229 CCCACACATCTCTGGGCT 58.592 61.111 0.00 0.00 40.95 5.19
3336 6784 0.392193 GCTCACCCACACATCTCTGG 60.392 60.000 0.00 0.00 0.00 3.86
3337 6785 0.612229 AGCTCACCCACACATCTCTG 59.388 55.000 0.00 0.00 0.00 3.35
3338 6786 0.901124 GAGCTCACCCACACATCTCT 59.099 55.000 9.40 0.00 0.00 3.10
3339 6787 0.901124 AGAGCTCACCCACACATCTC 59.099 55.000 17.77 0.00 0.00 2.75
3340 6788 1.277557 GAAGAGCTCACCCACACATCT 59.722 52.381 17.77 0.00 0.00 2.90
3341 6789 1.731720 GAAGAGCTCACCCACACATC 58.268 55.000 17.77 0.00 0.00 3.06
3342 6790 0.036952 CGAAGAGCTCACCCACACAT 60.037 55.000 17.77 0.00 0.00 3.21
3343 6791 1.367471 CGAAGAGCTCACCCACACA 59.633 57.895 17.77 0.00 0.00 3.72
3344 6792 1.374758 CCGAAGAGCTCACCCACAC 60.375 63.158 17.77 0.00 0.00 3.82
3345 6793 1.533033 TCCGAAGAGCTCACCCACA 60.533 57.895 17.77 0.00 0.00 4.17
3346 6794 1.216710 CTCCGAAGAGCTCACCCAC 59.783 63.158 17.77 1.25 32.13 4.61
3347 6795 1.076727 TCTCCGAAGAGCTCACCCA 59.923 57.895 17.77 0.00 40.22 4.51
3348 6796 1.513622 GTCTCCGAAGAGCTCACCC 59.486 63.158 17.77 3.18 40.22 4.61
3349 6797 1.137825 CGTCTCCGAAGAGCTCACC 59.862 63.158 17.77 5.88 40.22 4.02
3350 6798 1.515304 GCGTCTCCGAAGAGCTCAC 60.515 63.158 17.77 8.65 40.22 3.51
3351 6799 2.701780 GGCGTCTCCGAAGAGCTCA 61.702 63.158 17.77 0.00 40.22 4.26
3352 6800 2.103340 GGCGTCTCCGAAGAGCTC 59.897 66.667 5.27 5.27 40.22 4.09
3353 6801 2.361865 AGGCGTCTCCGAAGAGCT 60.362 61.111 0.00 0.00 40.22 4.09
3354 6802 2.202676 CAGGCGTCTCCGAAGAGC 60.203 66.667 0.00 0.00 40.22 4.09
3355 6803 2.202676 GCAGGCGTCTCCGAAGAG 60.203 66.667 0.00 0.00 41.93 2.85
3356 6804 2.492449 CTTGCAGGCGTCTCCGAAGA 62.492 60.000 0.00 0.00 40.77 2.87
3357 6805 2.048222 TTGCAGGCGTCTCCGAAG 60.048 61.111 0.00 0.00 40.77 3.79
3358 6806 2.048222 CTTGCAGGCGTCTCCGAA 60.048 61.111 0.00 0.00 40.77 4.30
3359 6807 4.742201 GCTTGCAGGCGTCTCCGA 62.742 66.667 4.56 0.00 40.77 4.55
3362 6810 4.704833 TGGGCTTGCAGGCGTCTC 62.705 66.667 15.24 5.06 42.43 3.36
3363 6811 4.711949 CTGGGCTTGCAGGCGTCT 62.712 66.667 15.24 0.00 42.43 4.18
3364 6812 4.704833 TCTGGGCTTGCAGGCGTC 62.705 66.667 15.24 10.05 42.43 5.19
3365 6813 4.711949 CTCTGGGCTTGCAGGCGT 62.712 66.667 15.24 0.00 42.43 5.68
3366 6814 3.694058 ATCTCTGGGCTTGCAGGCG 62.694 63.158 15.24 0.96 42.43 5.52
3367 6815 2.119655 CATCTCTGGGCTTGCAGGC 61.120 63.158 13.24 13.24 40.51 4.85
3368 6816 1.030488 CACATCTCTGGGCTTGCAGG 61.030 60.000 0.00 0.00 0.00 4.85
3369 6817 0.322277 ACACATCTCTGGGCTTGCAG 60.322 55.000 0.00 0.00 0.00 4.41
3370 6818 0.607217 CACACATCTCTGGGCTTGCA 60.607 55.000 0.00 0.00 0.00 4.08
3371 6819 1.310933 CCACACATCTCTGGGCTTGC 61.311 60.000 0.00 0.00 0.00 4.01
3372 6820 0.679002 CCCACACATCTCTGGGCTTG 60.679 60.000 0.00 0.00 40.95 4.01
3373 6821 1.687612 CCCACACATCTCTGGGCTT 59.312 57.895 0.00 0.00 40.95 4.35
3374 6822 3.408229 CCCACACATCTCTGGGCT 58.592 61.111 0.00 0.00 40.95 5.19
3377 6825 0.392193 GCTCACCCACACATCTCTGG 60.392 60.000 0.00 0.00 0.00 3.86
3378 6826 0.612229 AGCTCACCCACACATCTCTG 59.388 55.000 0.00 0.00 0.00 3.35
3379 6827 0.901124 GAGCTCACCCACACATCTCT 59.099 55.000 9.40 0.00 0.00 3.10
3380 6828 0.901124 AGAGCTCACCCACACATCTC 59.099 55.000 17.77 0.00 0.00 2.75
3381 6829 1.277557 GAAGAGCTCACCCACACATCT 59.722 52.381 17.77 0.00 0.00 2.90
3382 6830 1.731720 GAAGAGCTCACCCACACATC 58.268 55.000 17.77 0.00 0.00 3.06
3383 6831 0.036952 CGAAGAGCTCACCCACACAT 60.037 55.000 17.77 0.00 0.00 3.21
3384 6832 1.367471 CGAAGAGCTCACCCACACA 59.633 57.895 17.77 0.00 0.00 3.72
3385 6833 1.374758 CCGAAGAGCTCACCCACAC 60.375 63.158 17.77 0.00 0.00 3.82
3386 6834 1.533033 TCCGAAGAGCTCACCCACA 60.533 57.895 17.77 0.00 0.00 4.17
3387 6835 1.216710 CTCCGAAGAGCTCACCCAC 59.783 63.158 17.77 1.25 32.13 4.61
3388 6836 1.076727 TCTCCGAAGAGCTCACCCA 59.923 57.895 17.77 0.00 40.22 4.51
3389 6837 1.513622 GTCTCCGAAGAGCTCACCC 59.486 63.158 17.77 3.18 40.22 4.61
3390 6838 1.137825 CGTCTCCGAAGAGCTCACC 59.862 63.158 17.77 5.88 40.22 4.02
3391 6839 1.515304 GCGTCTCCGAAGAGCTCAC 60.515 63.158 17.77 8.65 40.22 3.51
3392 6840 2.701780 GGCGTCTCCGAAGAGCTCA 61.702 63.158 17.77 0.00 40.22 4.26
3393 6841 2.103340 GGCGTCTCCGAAGAGCTC 59.897 66.667 5.27 5.27 40.22 4.09
3394 6842 2.361865 AGGCGTCTCCGAAGAGCT 60.362 61.111 0.00 0.00 40.22 4.09
3395 6843 2.202676 CAGGCGTCTCCGAAGAGC 60.203 66.667 0.00 0.00 40.22 4.09
3396 6844 2.202676 GCAGGCGTCTCCGAAGAG 60.203 66.667 0.00 0.00 41.93 2.85
3397 6845 2.492449 CTTGCAGGCGTCTCCGAAGA 62.492 60.000 0.00 0.00 40.77 2.87
3398 6846 2.048222 TTGCAGGCGTCTCCGAAG 60.048 61.111 0.00 0.00 40.77 3.79
3399 6847 2.048222 CTTGCAGGCGTCTCCGAA 60.048 61.111 0.00 0.00 40.77 4.30
3400 6848 2.492449 CTTCTTGCAGGCGTCTCCGA 62.492 60.000 0.00 0.00 40.77 4.55
3401 6849 2.048222 TTCTTGCAGGCGTCTCCG 60.048 61.111 0.00 0.00 40.77 4.63
3402 6850 2.394563 GCTTCTTGCAGGCGTCTCC 61.395 63.158 0.00 0.00 42.31 3.71
3403 6851 3.172919 GCTTCTTGCAGGCGTCTC 58.827 61.111 0.00 0.00 42.31 3.36
3434 6937 4.008933 GGCAGAGCTCGTGTGGGT 62.009 66.667 8.37 0.00 0.00 4.51
3442 6945 0.036294 AGGTAAAACCGGCAGAGCTC 60.036 55.000 5.27 5.27 44.90 4.09
3448 6951 7.992754 TTAGTAAAAATAGGTAAAACCGGCA 57.007 32.000 0.00 0.00 44.90 5.69
3463 6966 9.088512 ACAAATGCGTGAAACAATTAGTAAAAA 57.911 25.926 0.00 0.00 35.74 1.94
3478 6981 6.606234 TTGTAAAACTAGACAAATGCGTGA 57.394 33.333 0.00 0.00 32.74 4.35
3481 6984 7.431084 AGTTGTTTGTAAAACTAGACAAATGCG 59.569 33.333 9.81 0.00 44.81 4.73
3502 7581 8.840321 GGCATATTGTCATTATTCTGTAGTTGT 58.160 33.333 0.00 0.00 0.00 3.32
3523 7602 5.221342 CCCTGCGGTTTATTTAAATGGCATA 60.221 40.000 11.05 0.00 36.42 3.14
3527 7606 3.118956 TGCCCTGCGGTTTATTTAAATGG 60.119 43.478 11.05 1.43 0.00 3.16
3530 7609 4.308265 GTTTGCCCTGCGGTTTATTTAAA 58.692 39.130 0.00 0.00 0.00 1.52
3535 7614 2.272923 GGTTTGCCCTGCGGTTTAT 58.727 52.632 0.00 0.00 0.00 1.40
3536 7615 3.766432 GGTTTGCCCTGCGGTTTA 58.234 55.556 0.00 0.00 0.00 2.01
3546 7625 1.611977 GTTACCTCACTTGGGTTTGCC 59.388 52.381 0.00 0.00 38.19 4.52
3566 7645 5.688621 CAGACCGGCATAAATCAATCAATTG 59.311 40.000 0.00 0.00 39.10 2.32
3571 7650 4.335315 TCAACAGACCGGCATAAATCAATC 59.665 41.667 0.00 0.00 0.00 2.67
3572 7651 4.269183 TCAACAGACCGGCATAAATCAAT 58.731 39.130 0.00 0.00 0.00 2.57
3595 7681 1.092345 GCCTTCCGGAGCAACAGATC 61.092 60.000 10.64 0.00 0.00 2.75
3600 7686 1.285950 GTTTGCCTTCCGGAGCAAC 59.714 57.895 25.82 18.07 44.64 4.17
3602 7688 2.282180 GGTTTGCCTTCCGGAGCA 60.282 61.111 13.98 13.98 37.18 4.26
3604 7690 1.228429 TTGGGTTTGCCTTCCGGAG 60.228 57.895 3.34 0.00 34.45 4.63
3607 7693 0.821711 TCACTTGGGTTTGCCTTCCG 60.822 55.000 0.00 0.00 34.45 4.30
3622 7708 3.350833 CTCCAGCAAATTTAGCCTCACT 58.649 45.455 8.41 0.00 0.00 3.41
3638 7724 2.266055 GGCAGAACGACCCTCCAG 59.734 66.667 0.00 0.00 0.00 3.86
3648 7734 1.445582 CCACTACCGTCGGCAGAAC 60.446 63.158 18.59 0.00 0.00 3.01
3658 7744 1.355971 CCATCGAACAACCACTACCG 58.644 55.000 0.00 0.00 0.00 4.02
3663 7749 1.669760 TCGGCCATCGAACAACCAC 60.670 57.895 2.24 0.00 45.86 4.16
3675 7761 4.414956 ATGGAGGTCCCTCGGCCA 62.415 66.667 2.24 1.22 43.59 5.36
3677 7763 1.335132 TTACATGGAGGTCCCTCGGC 61.335 60.000 7.24 0.00 43.59 5.54
3678 7764 0.464452 GTTACATGGAGGTCCCTCGG 59.536 60.000 7.24 2.60 43.59 4.63
3712 7799 6.942532 TCATCAGAAGTACAAAGCACTTTT 57.057 33.333 0.00 0.00 36.38 2.27
3713 7800 6.942532 TTCATCAGAAGTACAAAGCACTTT 57.057 33.333 0.00 0.00 36.38 2.66
3774 7861 4.617253 TCACCTACTAGCAGCAGAAAAA 57.383 40.909 0.00 0.00 0.00 1.94
3775 7862 4.617253 TTCACCTACTAGCAGCAGAAAA 57.383 40.909 0.00 0.00 0.00 2.29
3776 7863 4.826274 ATTCACCTACTAGCAGCAGAAA 57.174 40.909 0.00 0.00 0.00 2.52
3777 7864 4.826274 AATTCACCTACTAGCAGCAGAA 57.174 40.909 0.00 0.00 0.00 3.02
3778 7865 4.826274 AAATTCACCTACTAGCAGCAGA 57.174 40.909 0.00 0.00 0.00 4.26
3781 7868 5.629079 ACAAAAATTCACCTACTAGCAGC 57.371 39.130 0.00 0.00 0.00 5.25
3782 7869 6.349363 GGGAACAAAAATTCACCTACTAGCAG 60.349 42.308 0.00 0.00 0.00 4.24
3783 7870 5.475564 GGGAACAAAAATTCACCTACTAGCA 59.524 40.000 0.00 0.00 0.00 3.49
3785 7872 5.391629 GCGGGAACAAAAATTCACCTACTAG 60.392 44.000 0.00 0.00 0.00 2.57
3786 7873 4.456566 GCGGGAACAAAAATTCACCTACTA 59.543 41.667 0.00 0.00 0.00 1.82
3790 7877 1.343142 GGCGGGAACAAAAATTCACCT 59.657 47.619 0.00 0.00 0.00 4.00
3791 7878 1.790755 GGCGGGAACAAAAATTCACC 58.209 50.000 0.00 0.00 0.00 4.02
3793 7880 1.319541 TCGGCGGGAACAAAAATTCA 58.680 45.000 7.21 0.00 0.00 2.57
3794 7881 2.526077 GATCGGCGGGAACAAAAATTC 58.474 47.619 7.21 0.00 0.00 2.17
3815 8621 0.445436 CGAAGCAGCACATCTCAACC 59.555 55.000 0.00 0.00 0.00 3.77
3832 8638 4.733371 TGGATCGTGCGCTTGCGA 62.733 61.111 19.55 20.11 43.34 5.10
3842 8648 0.179100 CAAGAGGATGCGTGGATCGT 60.179 55.000 0.00 0.00 42.13 3.73
3860 8677 3.573772 CTTCGCAGCGAGTGGACCA 62.574 63.158 18.62 0.00 37.14 4.02
3861 8678 2.811317 CTTCGCAGCGAGTGGACC 60.811 66.667 18.62 0.00 37.14 4.46
3904 8732 1.025041 GGACGCCATTGATTTCCTCC 58.975 55.000 0.00 0.00 0.00 4.30
3951 8779 2.109181 GTACCGGCCTGCTCATCC 59.891 66.667 0.00 0.00 0.00 3.51
4041 8883 2.689034 AGAGGGAAAGCGGGAGGG 60.689 66.667 0.00 0.00 0.00 4.30
4284 9154 0.462759 CTTAGGGGAAAGCGGCTGAG 60.463 60.000 1.81 0.00 0.00 3.35
4307 9187 1.815003 CGCACGGCATCTTCATCCA 60.815 57.895 0.00 0.00 0.00 3.41
4311 9191 1.803922 CGTACGCACGGCATCTTCA 60.804 57.895 0.52 0.00 44.59 3.02
4331 9215 4.525949 GAACCCCGGCGTAGGAGC 62.526 72.222 18.75 7.14 0.00 4.70
4370 9254 3.872696 TCACTGTCAAACTCAAGCAAGA 58.127 40.909 0.00 0.00 0.00 3.02
4390 9274 0.668706 CGCAGGACCATCCATCGATC 60.669 60.000 0.00 0.00 39.61 3.69
4391 9275 1.368950 CGCAGGACCATCCATCGAT 59.631 57.895 0.00 0.00 39.61 3.59
4392 9276 2.814604 CGCAGGACCATCCATCGA 59.185 61.111 0.00 0.00 39.61 3.59
4411 9295 3.099141 TGGAATCCCTGCAAAATTCCTC 58.901 45.455 24.06 8.96 45.70 3.71
4412 9296 3.188880 TGGAATCCCTGCAAAATTCCT 57.811 42.857 24.06 0.00 45.70 3.36
4413 9297 3.865446 CTTGGAATCCCTGCAAAATTCC 58.135 45.455 20.01 20.01 45.71 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.