Multiple sequence alignment - TraesCS7A01G132500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G132500 chr7A 100.000 3970 0 0 1 3970 85212226 85216195 0.000000e+00 7332.0
1 TraesCS7A01G132500 chr7B 90.789 2877 157 45 196 3041 33079195 33081994 0.000000e+00 3746.0
2 TraesCS7A01G132500 chr7B 94.514 638 28 4 3338 3968 33082263 33082900 0.000000e+00 977.0
3 TraesCS7A01G132500 chr7B 95.074 203 9 1 2 203 33078878 33079080 6.400000e-83 318.0
4 TraesCS7A01G132500 chr7B 94.872 156 8 0 3179 3334 33082064 33082219 1.100000e-60 244.0
5 TraesCS7A01G132500 chr7D 90.260 1694 93 25 196 1844 83628881 83630547 0.000000e+00 2148.0
6 TraesCS7A01G132500 chr7D 94.490 1107 43 8 1843 2938 83630682 83631781 0.000000e+00 1690.0
7 TraesCS7A01G132500 chr7D 91.794 719 37 9 3228 3925 83632069 83632786 0.000000e+00 981.0
8 TraesCS7A01G132500 chr7D 94.608 204 10 1 1 203 83628560 83628763 8.280000e-82 315.0
9 TraesCS7A01G132500 chr7D 94.828 58 3 0 3169 3226 83631847 83631904 1.520000e-14 91.6
10 TraesCS7A01G132500 chr3D 93.571 140 8 1 3033 3172 349973625 349973487 1.450000e-49 207.0
11 TraesCS7A01G132500 chr1B 93.382 136 9 0 3037 3172 587986729 587986864 6.730000e-48 202.0
12 TraesCS7A01G132500 chr6D 91.096 146 11 2 3038 3183 63126973 63127116 3.130000e-46 196.0
13 TraesCS7A01G132500 chr3A 93.846 130 8 0 3041 3170 593991287 593991158 3.130000e-46 196.0
14 TraesCS7A01G132500 chr1A 91.971 137 11 0 3037 3173 49298352 49298216 4.050000e-45 193.0
15 TraesCS7A01G132500 chr1D 93.077 130 9 0 3041 3170 204390188 204390317 1.460000e-44 191.0
16 TraesCS7A01G132500 chr6B 89.189 148 13 3 3026 3172 82333026 82332881 8.760000e-42 182.0
17 TraesCS7A01G132500 chr6B 89.189 148 13 3 3026 3172 82424410 82424265 8.760000e-42 182.0
18 TraesCS7A01G132500 chr6B 88.514 148 14 3 3026 3172 82422086 82421941 4.080000e-40 176.0
19 TraesCS7A01G132500 chr4D 89.062 64 1 1 2869 2932 186062213 186062270 1.530000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G132500 chr7A 85212226 85216195 3969 False 7332.00 7332 100.00000 1 3970 1 chr7A.!!$F1 3969
1 TraesCS7A01G132500 chr7B 33078878 33082900 4022 False 1321.25 3746 93.81225 2 3968 4 chr7B.!!$F1 3966
2 TraesCS7A01G132500 chr7D 83628560 83632786 4226 False 1045.12 2148 93.19600 1 3925 5 chr7D.!!$F1 3924

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
237 364 0.179065 TATGGTAGCAGCAGCAGCAG 60.179 55.0 12.92 0.0 45.49 4.24 F
823 954 0.392998 ATCCAAGGCTACAAGCACGG 60.393 55.0 0.78 0.0 44.75 4.94 F
1333 1491 0.468226 TCCATCCCTGTTCGTATGCC 59.532 55.0 0.00 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1310 1468 0.337082 TACGAACAGGGATGGAGGGA 59.663 55.0 0.00 0.0 0.0 4.20 R
2620 2961 0.179089 CAGTAGCTGCGCCTGATCTT 60.179 55.0 4.18 0.0 0.0 2.40 R
3151 3500 0.034477 AAGGCCCTGTTCGGTAATGG 60.034 55.0 0.00 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.835344 CAATGCACACCAAACATTTGAAC 58.165 39.130 5.91 0.00 40.55 3.18
92 93 2.356135 TGGCCGATTTTAGCAGTCTTC 58.644 47.619 0.00 0.00 0.00 2.87
97 98 4.201763 GCCGATTTTAGCAGTCTTCTGAAG 60.202 45.833 11.18 11.18 43.76 3.02
112 113 6.017192 TCTTCTGAAGTTGTACTATCAGGGT 58.983 40.000 16.43 0.00 35.75 4.34
171 172 3.629398 GGAGATTGTTATCCACCTGCAAG 59.371 47.826 0.00 0.00 35.54 4.01
187 188 5.320549 CTGCAAGGAAAATCAGCAGTTAT 57.679 39.130 0.00 0.00 45.57 1.89
206 333 9.543018 GCAGTTATATTCACAACTAAGTTCAAC 57.457 33.333 0.00 0.00 33.29 3.18
235 362 2.614581 CTATGGTAGCAGCAGCAGC 58.385 57.895 3.17 0.46 45.49 5.25
237 364 0.179065 TATGGTAGCAGCAGCAGCAG 60.179 55.000 12.92 0.00 45.49 4.24
251 378 2.030540 AGCAGCAGCAATAACAACAGTG 60.031 45.455 3.17 0.00 45.49 3.66
474 601 4.123276 TCGCATCGTCAAAGTAAACAAC 57.877 40.909 0.00 0.00 0.00 3.32
478 605 3.564053 TCGTCAAAGTAAACAACCCCT 57.436 42.857 0.00 0.00 0.00 4.79
485 612 4.808767 AAGTAAACAACCCCTTCCTTCT 57.191 40.909 0.00 0.00 0.00 2.85
491 618 3.391382 CCCCTTCCTTCTCGGCGT 61.391 66.667 6.85 0.00 0.00 5.68
492 619 2.184579 CCCTTCCTTCTCGGCGTC 59.815 66.667 6.85 0.00 0.00 5.19
517 644 2.987547 TCGTCGGCCGGAAACTCT 60.988 61.111 27.83 0.00 37.11 3.24
823 954 0.392998 ATCCAAGGCTACAAGCACGG 60.393 55.000 0.78 0.00 44.75 4.94
851 982 3.822192 CTCACCGCCGTCCGATCA 61.822 66.667 0.00 0.00 40.02 2.92
890 1021 3.102097 CGATCGCCTGCCCTTTTC 58.898 61.111 0.26 0.00 0.00 2.29
914 1045 4.735132 CGGCCCTCGCGTTTCTCA 62.735 66.667 5.77 0.00 35.02 3.27
922 1053 3.381045 CCTCGCGTTTCTCAATATAGCA 58.619 45.455 5.77 0.00 0.00 3.49
1155 1306 2.018086 CTCCCTCCCTCCCTCTCCT 61.018 68.421 0.00 0.00 0.00 3.69
1157 1308 2.018086 CCCTCCCTCCCTCTCCTCT 61.018 68.421 0.00 0.00 0.00 3.69
1168 1319 0.823460 CTCTCCTCTGGTTCCTCTGC 59.177 60.000 0.00 0.00 0.00 4.26
1187 1339 1.334599 GCACAAATTTCCGCTGTCGAA 60.335 47.619 0.00 0.00 38.10 3.71
1197 1349 4.823276 CTGTCGAAGCTGCTAGGG 57.177 61.111 0.90 0.00 0.00 3.53
1310 1468 3.452627 GGTGGAGGATATGAGTGAGTTGT 59.547 47.826 0.00 0.00 0.00 3.32
1313 1471 3.070302 GGAGGATATGAGTGAGTTGTCCC 59.930 52.174 0.00 0.00 0.00 4.46
1332 1490 1.541233 CCTCCATCCCTGTTCGTATGC 60.541 57.143 0.00 0.00 0.00 3.14
1333 1491 0.468226 TCCATCCCTGTTCGTATGCC 59.532 55.000 0.00 0.00 0.00 4.40
1335 1493 1.227556 ATCCCTGTTCGTATGCCGC 60.228 57.895 0.00 0.00 36.19 6.53
1373 1531 1.474077 AGTTGGCAGGATTTTGATCGC 59.526 47.619 0.00 0.00 0.00 4.58
1382 1542 2.095853 GGATTTTGATCGCTGCTTCGAA 59.904 45.455 0.00 0.00 42.15 3.71
1396 1556 5.331830 GCTGCTTCGAATTTTGTGTCTTTTC 60.332 40.000 0.00 0.00 0.00 2.29
1410 1573 4.741676 GTGTCTTTTCAAGCATTCAACCTG 59.258 41.667 0.00 0.00 0.00 4.00
1467 1630 0.543277 TTGCCAGGTATCAGCAGGAG 59.457 55.000 0.00 0.00 37.89 3.69
1500 1663 4.848841 CAGATATACTTGTCGCGAGCTAAG 59.151 45.833 10.24 16.90 0.00 2.18
1525 1688 7.509318 AGAGGGTATGCTGTTCTTACATACATA 59.491 37.037 12.79 0.00 45.09 2.29
1528 1691 7.878127 GGGTATGCTGTTCTTACATACATACAT 59.122 37.037 20.84 0.00 45.15 2.29
1532 1695 8.424274 TGCTGTTCTTACATACATACATTCAG 57.576 34.615 0.00 0.00 32.86 3.02
1533 1696 8.040727 TGCTGTTCTTACATACATACATTCAGT 58.959 33.333 0.00 0.00 32.86 3.41
1534 1697 9.529325 GCTGTTCTTACATACATACATTCAGTA 57.471 33.333 0.00 0.00 33.43 2.74
1551 1714 9.912634 ACATTCAGTACAAATTCAGTAAAATGG 57.087 29.630 16.22 0.00 30.48 3.16
1575 1770 4.226761 GTTTTTGTGATAAGGCTTGTCGG 58.773 43.478 17.53 0.00 0.00 4.79
1624 1819 4.625800 GGCTGAAGATCTTGCCGT 57.374 55.556 18.16 0.00 35.79 5.68
1669 1864 1.678970 CTGTAAAGGCTGGCCCCAC 60.679 63.158 8.11 4.67 36.58 4.61
1687 1882 4.119862 CCCACTGATACGGTTAGTTGATG 58.880 47.826 0.00 0.00 0.00 3.07
1718 1913 8.801299 CAGTCTATGATACACTTCATATGTCCT 58.199 37.037 1.90 0.00 37.81 3.85
1763 1959 3.956199 ACAAGCCTTCATGTATGGGAATG 59.044 43.478 0.00 0.00 0.00 2.67
1886 2218 7.284489 AGTGCCAACTTTTTAGATCTTACAACA 59.716 33.333 0.00 0.00 30.14 3.33
1913 2245 6.438186 TGCCCATATCAGATATCTGTCAAA 57.562 37.500 27.80 12.59 44.12 2.69
1914 2246 7.024345 TGCCCATATCAGATATCTGTCAAAT 57.976 36.000 27.80 17.97 44.12 2.32
1916 2248 8.775151 TGCCCATATCAGATATCTGTCAAATAT 58.225 33.333 27.80 20.40 44.12 1.28
1917 2249 9.624373 GCCCATATCAGATATCTGTCAAATATT 57.376 33.333 27.80 9.27 44.12 1.28
1971 2307 3.424703 CTGGTTTGTGATGGAATGGTCT 58.575 45.455 0.00 0.00 0.00 3.85
2099 2440 7.915397 GGTATTGCAACTTTAGATATGGTTGTG 59.085 37.037 0.00 0.00 40.49 3.33
2253 2594 2.329267 TGAGTCCTCTTCAGCTTTCCA 58.671 47.619 0.00 0.00 0.00 3.53
2297 2638 6.651755 CTGAAAGTTGAAGCATTGTGTTTT 57.348 33.333 0.00 0.00 0.00 2.43
2416 2757 3.566853 CAGTATGCACCTGCCGCG 61.567 66.667 0.00 0.00 41.18 6.46
2452 2793 2.838748 ATCAGCCTCGTCCGACAGGA 62.839 60.000 16.69 0.00 46.11 3.86
2566 2907 1.071699 GGTGGTTGGACTGCTGAGTTA 59.928 52.381 0.00 0.00 30.16 2.24
2739 3080 4.021544 GTGGCCTACATTTTGGACATCAAA 60.022 41.667 3.32 0.00 44.07 2.69
2783 3124 3.064324 GCATCAAGCGGCCCAGTT 61.064 61.111 0.00 0.00 0.00 3.16
2787 3128 2.410322 ATCAAGCGGCCCAGTTGTCA 62.410 55.000 0.00 0.00 0.00 3.58
2944 3289 7.290857 TGAGTGTTATCAGTATCGCTTTTTC 57.709 36.000 0.00 0.00 0.00 2.29
2959 3304 4.142924 CGCTTTTTCTTTTGTGGCAGTTTT 60.143 37.500 0.00 0.00 0.00 2.43
2988 3333 4.084013 CCTGATCGTGTTTACCAGTTTGTC 60.084 45.833 0.00 0.00 0.00 3.18
3004 3349 7.070946 ACCAGTTTGTCTGATCTCTGATATCAT 59.929 37.037 5.72 0.00 46.27 2.45
3005 3350 7.932491 CCAGTTTGTCTGATCTCTGATATCATT 59.068 37.037 5.72 0.00 46.27 2.57
3015 3364 8.921205 TGATCTCTGATATCATTCTTTCACTCA 58.079 33.333 5.72 0.00 0.00 3.41
3016 3365 9.195411 GATCTCTGATATCATTCTTTCACTCAC 57.805 37.037 5.72 0.00 0.00 3.51
3017 3366 8.303780 TCTCTGATATCATTCTTTCACTCACT 57.696 34.615 5.72 0.00 0.00 3.41
3037 3386 8.684520 ACTCACTTAGTGTGGTTATGAGTATAC 58.315 37.037 17.07 0.00 46.20 1.47
3038 3387 8.818622 TCACTTAGTGTGGTTATGAGTATACT 57.181 34.615 12.41 4.68 46.20 2.12
3039 3388 9.251440 TCACTTAGTGTGGTTATGAGTATACTT 57.749 33.333 12.41 0.00 46.20 2.24
3043 3392 7.598759 AGTGTGGTTATGAGTATACTTAGGG 57.401 40.000 6.88 0.00 0.00 3.53
3044 3393 6.553852 AGTGTGGTTATGAGTATACTTAGGGG 59.446 42.308 6.88 0.00 0.00 4.79
3045 3394 5.306160 TGTGGTTATGAGTATACTTAGGGGC 59.694 44.000 6.88 0.00 0.00 5.80
3046 3395 5.543020 GTGGTTATGAGTATACTTAGGGGCT 59.457 44.000 6.88 0.00 0.00 5.19
3047 3396 5.542635 TGGTTATGAGTATACTTAGGGGCTG 59.457 44.000 6.88 0.00 0.00 4.85
3048 3397 5.543020 GGTTATGAGTATACTTAGGGGCTGT 59.457 44.000 6.88 0.00 0.00 4.40
3049 3398 6.042897 GGTTATGAGTATACTTAGGGGCTGTT 59.957 42.308 6.88 0.00 0.00 3.16
3050 3399 5.810080 ATGAGTATACTTAGGGGCTGTTC 57.190 43.478 6.88 0.00 0.00 3.18
3051 3400 3.635373 TGAGTATACTTAGGGGCTGTTCG 59.365 47.826 6.88 0.00 0.00 3.95
3052 3401 2.963782 AGTATACTTAGGGGCTGTTCGG 59.036 50.000 0.00 0.00 0.00 4.30
3053 3402 0.468648 ATACTTAGGGGCTGTTCGGC 59.531 55.000 0.00 0.00 37.49 5.54
3054 3403 0.905809 TACTTAGGGGCTGTTCGGCA 60.906 55.000 5.97 0.00 40.61 5.69
3055 3404 1.002624 CTTAGGGGCTGTTCGGCAA 60.003 57.895 5.97 0.00 40.61 4.52
3056 3405 1.302993 TTAGGGGCTGTTCGGCAAC 60.303 57.895 5.97 0.00 40.61 4.17
3068 3417 4.090057 GGCAACGCTTCGCTCCAC 62.090 66.667 0.00 0.00 0.00 4.02
3069 3418 3.345808 GCAACGCTTCGCTCCACA 61.346 61.111 0.00 0.00 0.00 4.17
3070 3419 2.892334 GCAACGCTTCGCTCCACAA 61.892 57.895 0.00 0.00 0.00 3.33
3071 3420 1.082756 CAACGCTTCGCTCCACAAC 60.083 57.895 0.00 0.00 0.00 3.32
3072 3421 1.227556 AACGCTTCGCTCCACAACT 60.228 52.632 0.00 0.00 0.00 3.16
3073 3422 1.222115 AACGCTTCGCTCCACAACTC 61.222 55.000 0.00 0.00 0.00 3.01
3074 3423 2.383527 CGCTTCGCTCCACAACTCC 61.384 63.158 0.00 0.00 0.00 3.85
3075 3424 2.035442 GCTTCGCTCCACAACTCCC 61.035 63.158 0.00 0.00 0.00 4.30
3076 3425 1.738099 CTTCGCTCCACAACTCCCG 60.738 63.158 0.00 0.00 0.00 5.14
3077 3426 3.234630 TTCGCTCCACAACTCCCGG 62.235 63.158 0.00 0.00 0.00 5.73
3078 3427 3.691342 CGCTCCACAACTCCCGGA 61.691 66.667 0.73 0.00 0.00 5.14
3080 3429 2.266055 CTCCACAACTCCCGGAGC 59.734 66.667 14.86 0.00 39.95 4.70
3081 3430 3.649277 CTCCACAACTCCCGGAGCG 62.649 68.421 14.86 8.55 39.95 5.03
3093 3442 4.821589 GGAGCGGAGTTGGCGGAG 62.822 72.222 0.00 0.00 35.00 4.63
3111 3460 4.969816 CGGAGCTGTAGTTTAAAATGGTG 58.030 43.478 0.00 0.00 0.00 4.17
3112 3461 4.142687 CGGAGCTGTAGTTTAAAATGGTGG 60.143 45.833 0.00 0.00 0.00 4.61
3113 3462 5.007682 GGAGCTGTAGTTTAAAATGGTGGA 58.992 41.667 0.00 0.00 0.00 4.02
3114 3463 5.123979 GGAGCTGTAGTTTAAAATGGTGGAG 59.876 44.000 0.00 0.00 0.00 3.86
3115 3464 5.631119 AGCTGTAGTTTAAAATGGTGGAGT 58.369 37.500 0.00 0.00 0.00 3.85
3116 3465 6.068670 AGCTGTAGTTTAAAATGGTGGAGTT 58.931 36.000 0.00 0.00 0.00 3.01
3117 3466 6.016276 AGCTGTAGTTTAAAATGGTGGAGTTG 60.016 38.462 0.00 0.00 0.00 3.16
3118 3467 6.079424 TGTAGTTTAAAATGGTGGAGTTGC 57.921 37.500 0.00 0.00 0.00 4.17
3119 3468 4.600692 AGTTTAAAATGGTGGAGTTGCC 57.399 40.909 0.00 0.00 37.10 4.52
3120 3469 3.964031 AGTTTAAAATGGTGGAGTTGCCA 59.036 39.130 0.00 0.00 46.96 4.92
3129 3478 1.917872 TGGAGTTGCCATTAACCCAC 58.082 50.000 0.00 0.00 43.33 4.61
3130 3479 1.427368 TGGAGTTGCCATTAACCCACT 59.573 47.619 0.00 0.00 43.33 4.00
3131 3480 2.092323 GGAGTTGCCATTAACCCACTC 58.908 52.381 0.00 0.00 36.34 3.51
3132 3481 2.092323 GAGTTGCCATTAACCCACTCC 58.908 52.381 0.00 0.00 0.00 3.85
3133 3482 0.808755 GTTGCCATTAACCCACTCCG 59.191 55.000 0.00 0.00 0.00 4.63
3134 3483 0.963355 TTGCCATTAACCCACTCCGC 60.963 55.000 0.00 0.00 0.00 5.54
3135 3484 1.377987 GCCATTAACCCACTCCGCA 60.378 57.895 0.00 0.00 0.00 5.69
3136 3485 1.376609 GCCATTAACCCACTCCGCAG 61.377 60.000 0.00 0.00 0.00 5.18
3137 3486 0.251916 CCATTAACCCACTCCGCAGA 59.748 55.000 0.00 0.00 0.00 4.26
3138 3487 1.134098 CCATTAACCCACTCCGCAGAT 60.134 52.381 0.00 0.00 0.00 2.90
3139 3488 2.643551 CATTAACCCACTCCGCAGATT 58.356 47.619 0.00 0.00 0.00 2.40
3140 3489 2.396590 TTAACCCACTCCGCAGATTC 57.603 50.000 0.00 0.00 0.00 2.52
3141 3490 1.568504 TAACCCACTCCGCAGATTCT 58.431 50.000 0.00 0.00 0.00 2.40
3142 3491 0.036010 AACCCACTCCGCAGATTCTG 60.036 55.000 9.40 9.40 34.12 3.02
3143 3492 1.153289 CCCACTCCGCAGATTCTGG 60.153 63.158 15.28 5.63 31.21 3.86
3144 3493 1.153289 CCACTCCGCAGATTCTGGG 60.153 63.158 20.63 20.63 42.81 4.45
3145 3494 1.617018 CCACTCCGCAGATTCTGGGA 61.617 60.000 27.07 21.86 45.41 4.37
3146 3495 0.179089 CACTCCGCAGATTCTGGGAG 60.179 60.000 30.17 30.17 45.41 4.30
3147 3496 1.227497 CTCCGCAGATTCTGGGAGC 60.227 63.158 27.07 7.82 45.41 4.70
3148 3497 1.964608 CTCCGCAGATTCTGGGAGCA 61.965 60.000 27.07 12.56 45.41 4.26
3149 3498 1.523258 CCGCAGATTCTGGGAGCAG 60.523 63.158 27.07 10.42 45.41 4.24
3150 3499 1.519246 CGCAGATTCTGGGAGCAGA 59.481 57.895 22.51 0.00 45.41 4.26
3151 3500 0.809241 CGCAGATTCTGGGAGCAGAC 60.809 60.000 22.51 0.00 45.41 3.51
3152 3501 0.463474 GCAGATTCTGGGAGCAGACC 60.463 60.000 15.28 0.00 31.21 3.85
3153 3502 0.907486 CAGATTCTGGGAGCAGACCA 59.093 55.000 5.73 0.00 36.38 4.02
3154 3503 1.489649 CAGATTCTGGGAGCAGACCAT 59.510 52.381 5.73 0.00 37.38 3.55
3155 3504 2.092538 CAGATTCTGGGAGCAGACCATT 60.093 50.000 5.73 0.00 37.38 3.16
3156 3505 3.135348 CAGATTCTGGGAGCAGACCATTA 59.865 47.826 5.73 0.00 37.38 1.90
3157 3506 3.135530 AGATTCTGGGAGCAGACCATTAC 59.864 47.826 0.00 0.00 37.38 1.89
3158 3507 1.204146 TCTGGGAGCAGACCATTACC 58.796 55.000 0.00 0.00 37.38 2.85
3159 3508 0.179073 CTGGGAGCAGACCATTACCG 60.179 60.000 0.00 0.00 37.38 4.02
3160 3509 0.616395 TGGGAGCAGACCATTACCGA 60.616 55.000 0.00 0.00 31.83 4.69
3161 3510 0.539986 GGGAGCAGACCATTACCGAA 59.460 55.000 0.00 0.00 0.00 4.30
3162 3511 1.653151 GGAGCAGACCATTACCGAAC 58.347 55.000 0.00 0.00 0.00 3.95
3163 3512 1.066430 GGAGCAGACCATTACCGAACA 60.066 52.381 0.00 0.00 0.00 3.18
3164 3513 2.271800 GAGCAGACCATTACCGAACAG 58.728 52.381 0.00 0.00 0.00 3.16
3166 3515 2.012051 GCAGACCATTACCGAACAGGG 61.012 57.143 0.00 0.00 46.96 4.45
3167 3516 0.252197 AGACCATTACCGAACAGGGC 59.748 55.000 0.00 0.00 46.96 5.19
3277 3852 6.135290 TCAAATTAATCCAGGCATTTCTCG 57.865 37.500 0.00 0.00 0.00 4.04
3282 3857 0.035439 TCCAGGCATTTCTCGGTTCC 60.035 55.000 0.00 0.00 0.00 3.62
3355 3970 8.697846 AACATCAATGCAAATATCAAGAACAG 57.302 30.769 0.00 0.00 0.00 3.16
3360 3975 8.143193 TCAATGCAAATATCAAGAACAGTGTTT 58.857 29.630 10.45 0.00 0.00 2.83
3449 4066 8.232913 TCAATACATTTTGTATAAAGGGAGCC 57.767 34.615 0.86 0.00 42.29 4.70
3500 4117 2.862140 GCAAACTTCCACATCAAACCCG 60.862 50.000 0.00 0.00 0.00 5.28
3699 4316 3.136123 CCAAGCGATGCCCACCAG 61.136 66.667 0.00 0.00 0.00 4.00
3746 4363 1.825191 CATTGGATGCCGGTCCCAG 60.825 63.158 8.56 0.00 37.48 4.45
3896 4513 2.632512 TGTTTCAAAATCAAGAGGGGCC 59.367 45.455 0.00 0.00 0.00 5.80
3925 4542 2.832129 AGAGAACACCCGAATCAAGCTA 59.168 45.455 0.00 0.00 0.00 3.32
3928 4545 5.128827 AGAGAACACCCGAATCAAGCTATAA 59.871 40.000 0.00 0.00 0.00 0.98
3929 4546 5.930135 AGAACACCCGAATCAAGCTATAAT 58.070 37.500 0.00 0.00 0.00 1.28
3930 4547 5.760253 AGAACACCCGAATCAAGCTATAATG 59.240 40.000 0.00 0.00 0.00 1.90
3946 4567 7.290061 AGCTATAATGATTACAAGGAAGCCAA 58.710 34.615 0.00 0.00 0.00 4.52
3962 4584 5.393461 GGAAGCCAAGTAAAAGACCATGATG 60.393 44.000 0.00 0.00 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 6.425504 CAGCTTCTCACTTTACTTTCTTGTG 58.574 40.000 0.00 0.00 0.00 3.33
92 93 4.383118 CCCACCCTGATAGTACAACTTCAG 60.383 50.000 0.00 1.82 35.29 3.02
97 98 2.434702 CTCCCCACCCTGATAGTACAAC 59.565 54.545 0.00 0.00 0.00 3.32
112 113 0.685097 GCGGCTAATCATACTCCCCA 59.315 55.000 0.00 0.00 0.00 4.96
140 141 1.271856 TAACAATCTCCGCCTCCACA 58.728 50.000 0.00 0.00 0.00 4.17
171 172 8.462016 AGTTGTGAATATAACTGCTGATTTTCC 58.538 33.333 0.00 0.00 36.95 3.13
206 333 2.480845 GCTACCATAGCCGGTGTTAAG 58.519 52.381 1.90 0.00 45.95 1.85
235 362 2.805671 TCCGTCACTGTTGTTATTGCTG 59.194 45.455 0.00 0.00 0.00 4.41
237 364 3.889196 TTCCGTCACTGTTGTTATTGC 57.111 42.857 0.00 0.00 0.00 3.56
239 366 5.587043 TCAGTTTTCCGTCACTGTTGTTATT 59.413 36.000 0.00 0.00 41.16 1.40
251 378 0.319641 AGGCTCGTCAGTTTTCCGTC 60.320 55.000 0.00 0.00 0.00 4.79
301 428 2.223829 CGACGGCTTCCATAATCTCACT 60.224 50.000 0.00 0.00 0.00 3.41
451 578 2.156891 TGTTTACTTTGACGATGCGAGC 59.843 45.455 0.00 0.00 0.00 5.03
463 590 5.138276 GAGAAGGAAGGGGTTGTTTACTTT 58.862 41.667 0.00 0.00 0.00 2.66
474 601 3.372554 GACGCCGAGAAGGAAGGGG 62.373 68.421 0.00 0.00 45.00 4.79
837 968 2.351336 GATCTTGATCGGACGGCGGT 62.351 60.000 13.24 0.00 0.00 5.68
839 970 2.011349 CGATCTTGATCGGACGGCG 61.011 63.158 21.19 4.80 40.12 6.46
866 997 2.587194 GCAGGCGATCGCAGATGT 60.587 61.111 38.00 16.18 45.12 3.06
867 998 3.344215 GGCAGGCGATCGCAGATG 61.344 66.667 38.00 31.07 45.12 2.90
871 1002 3.918253 AAAAGGGCAGGCGATCGCA 62.918 57.895 38.00 0.00 44.11 5.10
905 1036 5.388475 CCGTGTATGCTATATTGAGAAACGC 60.388 44.000 0.00 0.00 0.00 4.84
914 1045 2.236395 GGAGGCCCGTGTATGCTATATT 59.764 50.000 0.00 0.00 0.00 1.28
1039 1171 4.592192 ACCATCTCGCCATCGCCG 62.592 66.667 0.00 0.00 35.26 6.46
1040 1172 2.969238 CACCATCTCGCCATCGCC 60.969 66.667 0.00 0.00 35.26 5.54
1041 1173 2.969238 CCACCATCTCGCCATCGC 60.969 66.667 0.00 0.00 35.26 4.58
1042 1174 1.884464 CACCACCATCTCGCCATCG 60.884 63.158 0.00 0.00 0.00 3.84
1043 1175 1.524621 CCACCACCATCTCGCCATC 60.525 63.158 0.00 0.00 0.00 3.51
1044 1176 2.300967 ACCACCACCATCTCGCCAT 61.301 57.895 0.00 0.00 0.00 4.40
1045 1177 2.927856 ACCACCACCATCTCGCCA 60.928 61.111 0.00 0.00 0.00 5.69
1046 1178 2.436646 CACCACCACCATCTCGCC 60.437 66.667 0.00 0.00 0.00 5.54
1047 1179 2.436646 CCACCACCACCATCTCGC 60.437 66.667 0.00 0.00 0.00 5.03
1048 1180 2.268920 CCCACCACCACCATCTCG 59.731 66.667 0.00 0.00 0.00 4.04
1118 1259 2.173020 CGCGCACATACATGCTGGA 61.173 57.895 8.75 0.00 43.80 3.86
1155 1306 2.957402 ATTTGTGCAGAGGAACCAGA 57.043 45.000 0.00 0.00 0.00 3.86
1157 1308 2.627699 GGAAATTTGTGCAGAGGAACCA 59.372 45.455 0.00 0.00 0.00 3.67
1168 1319 2.574322 CTTCGACAGCGGAAATTTGTG 58.426 47.619 0.00 0.00 38.28 3.33
1187 1339 0.693767 AGGAATCAGCCCTAGCAGCT 60.694 55.000 0.00 0.00 43.56 4.24
1197 1349 3.428589 GCATCCACAGAAAAGGAATCAGC 60.429 47.826 0.00 0.00 37.48 4.26
1310 1468 0.337082 TACGAACAGGGATGGAGGGA 59.663 55.000 0.00 0.00 0.00 4.20
1313 1471 1.541233 GGCATACGAACAGGGATGGAG 60.541 57.143 0.00 0.00 0.00 3.86
1332 1490 1.699656 CTGCATCCAAGAACGAGCGG 61.700 60.000 0.00 0.00 0.00 5.52
1333 1491 1.712081 CTGCATCCAAGAACGAGCG 59.288 57.895 0.00 0.00 0.00 5.03
1335 1493 0.725686 CTGCTGCATCCAAGAACGAG 59.274 55.000 1.31 0.00 0.00 4.18
1373 1531 5.743398 TGAAAAGACACAAAATTCGAAGCAG 59.257 36.000 3.35 0.00 0.00 4.24
1396 1556 3.181503 CCTTCGATCAGGTTGAATGCTTG 60.182 47.826 0.00 0.00 29.85 4.01
1428 1591 4.335584 CTCGCCTCGATCGCCTCC 62.336 72.222 11.09 0.00 34.61 4.30
1467 1630 5.118357 CGACAAGTATATCTGCTCAGCATTC 59.882 44.000 0.00 0.00 38.13 2.67
1500 1663 5.914033 TGTATGTAAGAACAGCATACCCTC 58.086 41.667 10.25 0.00 42.32 4.30
1525 1688 9.912634 CCATTTTACTGAATTTGTACTGAATGT 57.087 29.630 0.00 0.00 0.00 2.71
1528 1691 8.908903 ACACCATTTTACTGAATTTGTACTGAA 58.091 29.630 0.00 0.00 0.00 3.02
1530 1693 9.528018 AAACACCATTTTACTGAATTTGTACTG 57.472 29.630 0.00 0.00 0.00 2.74
1534 1697 9.225436 ACAAAAACACCATTTTACTGAATTTGT 57.775 25.926 0.00 0.00 32.93 2.83
1535 1698 9.488124 CACAAAAACACCATTTTACTGAATTTG 57.512 29.630 0.00 0.00 31.54 2.32
1551 1714 4.675114 CGACAAGCCTTATCACAAAAACAC 59.325 41.667 0.00 0.00 0.00 3.32
1575 1770 2.751806 CCAGAAAACTCTCAATCAGGGC 59.248 50.000 0.00 0.00 0.00 5.19
1669 1864 4.026804 GCGAACATCAACTAACCGTATCAG 60.027 45.833 0.00 0.00 0.00 2.90
1687 1882 5.340803 TGAAGTGTATCATAGACTGCGAAC 58.659 41.667 0.00 0.00 30.37 3.95
1718 1913 7.013750 TTGTAATTACACAAAGCTGATGGAACA 59.986 33.333 17.85 0.00 37.99 3.18
1828 2024 7.230849 TGAGCATTTCACTGATACCATTTTT 57.769 32.000 0.00 0.00 0.00 1.94
1858 2190 8.911918 TGTAAGATCTAAAAAGTTGGCACTTA 57.088 30.769 0.00 0.00 42.89 2.24
1880 2212 9.836864 GATATCTGATATGGGCATTATGTTGTA 57.163 33.333 14.60 0.00 0.00 2.41
1886 2218 8.328055 TGACAGATATCTGATATGGGCATTAT 57.672 34.615 34.16 10.99 46.59 1.28
1914 2246 9.958180 TTCATCCAGATTTAGACTTTCACAATA 57.042 29.630 0.00 0.00 0.00 1.90
1916 2248 8.690203 TTTCATCCAGATTTAGACTTTCACAA 57.310 30.769 0.00 0.00 0.00 3.33
1917 2249 8.868522 ATTTCATCCAGATTTAGACTTTCACA 57.131 30.769 0.00 0.00 0.00 3.58
1971 2307 6.247229 TGGAATATCCAGCTTGCTAAAGTA 57.753 37.500 0.00 0.00 42.67 2.24
2099 2440 6.109359 AGCCTGTTGATGATTAGACAACTAC 58.891 40.000 0.00 0.00 42.60 2.73
2202 2543 9.950680 CTTTATGGTTTACAGGTAAATATGCAG 57.049 33.333 7.78 4.18 37.37 4.41
2253 2594 9.778741 TTTCAGTAGTACAGAACAGAAATCATT 57.221 29.630 7.57 0.00 0.00 2.57
2416 2757 1.203001 TGATTCAACCCACCAGGAACC 60.203 52.381 0.00 0.00 39.89 3.62
2566 2907 3.317571 AGTGCTCTTCGCCTGCCT 61.318 61.111 0.00 0.00 38.05 4.75
2587 2928 5.126067 ACGAATATGCTGTTAAATGCCTCT 58.874 37.500 0.00 0.00 0.00 3.69
2620 2961 0.179089 CAGTAGCTGCGCCTGATCTT 60.179 55.000 4.18 0.00 0.00 2.40
2635 2976 0.695462 ATGCATCCTCTGGGGCAGTA 60.695 55.000 0.00 0.00 36.99 2.74
2640 2981 0.846015 TAACCATGCATCCTCTGGGG 59.154 55.000 8.12 2.06 34.21 4.96
2739 3080 2.641815 AGACACTTCAATCCCTTCTGCT 59.358 45.455 0.00 0.00 0.00 4.24
2783 3124 2.293122 CGACTTGCAAAAAGGGATGACA 59.707 45.455 0.00 0.00 0.00 3.58
2787 3128 3.140325 TCTCGACTTGCAAAAAGGGAT 57.860 42.857 0.00 0.00 0.00 3.85
2818 3159 4.192429 TGGCATGATCATAGGTACATCG 57.808 45.455 8.15 0.00 0.00 3.84
2937 3282 4.944962 AAACTGCCACAAAAGAAAAAGC 57.055 36.364 0.00 0.00 0.00 3.51
2944 3289 5.977129 CAGGTACTAAAAACTGCCACAAAAG 59.023 40.000 0.00 0.00 36.02 2.27
2959 3304 5.477984 ACTGGTAAACACGATCAGGTACTAA 59.522 40.000 0.00 0.00 36.02 2.24
2988 3333 9.414295 GAGTGAAAGAATGATATCAGAGATCAG 57.586 37.037 13.12 0.00 36.77 2.90
3017 3366 9.139734 CCCTAAGTATACTCATAACCACACTAA 57.860 37.037 5.70 0.00 0.00 2.24
3023 3372 5.542635 CAGCCCCTAAGTATACTCATAACCA 59.457 44.000 5.70 0.00 0.00 3.67
3037 3386 1.002624 TTGCCGAACAGCCCCTAAG 60.003 57.895 0.00 0.00 0.00 2.18
3038 3387 1.302993 GTTGCCGAACAGCCCCTAA 60.303 57.895 0.00 0.00 31.78 2.69
3039 3388 2.349755 GTTGCCGAACAGCCCCTA 59.650 61.111 0.00 0.00 31.78 3.53
3043 3392 3.595108 GAAGCGTTGCCGAACAGCC 62.595 63.158 0.00 0.00 34.29 4.85
3044 3393 2.127232 GAAGCGTTGCCGAACAGC 60.127 61.111 0.00 0.00 35.63 4.40
3045 3394 2.170985 CGAAGCGTTGCCGAACAG 59.829 61.111 0.00 0.00 35.63 3.16
3058 3407 1.738099 CGGGAGTTGTGGAGCGAAG 60.738 63.158 0.00 0.00 0.00 3.79
3059 3408 2.342279 CGGGAGTTGTGGAGCGAA 59.658 61.111 0.00 0.00 0.00 4.70
3060 3409 3.691342 CCGGGAGTTGTGGAGCGA 61.691 66.667 0.00 0.00 0.00 4.93
3061 3410 3.649277 CTCCGGGAGTTGTGGAGCG 62.649 68.421 16.15 0.00 42.53 5.03
3062 3411 2.266055 CTCCGGGAGTTGTGGAGC 59.734 66.667 16.15 0.00 42.53 4.70
3064 3413 3.691342 CGCTCCGGGAGTTGTGGA 61.691 66.667 24.30 0.00 31.39 4.02
3065 3414 4.760047 CCGCTCCGGGAGTTGTGG 62.760 72.222 24.30 16.72 44.15 4.17
3076 3425 4.821589 CTCCGCCAACTCCGCTCC 62.822 72.222 0.00 0.00 0.00 4.70
3080 3429 2.890847 CTACAGCTCCGCCAACTCCG 62.891 65.000 0.00 0.00 0.00 4.63
3081 3430 1.153549 CTACAGCTCCGCCAACTCC 60.154 63.158 0.00 0.00 0.00 3.85
3082 3431 0.037232 AACTACAGCTCCGCCAACTC 60.037 55.000 0.00 0.00 0.00 3.01
3083 3432 0.396811 AAACTACAGCTCCGCCAACT 59.603 50.000 0.00 0.00 0.00 3.16
3084 3433 2.088950 TAAACTACAGCTCCGCCAAC 57.911 50.000 0.00 0.00 0.00 3.77
3085 3434 2.843401 TTAAACTACAGCTCCGCCAA 57.157 45.000 0.00 0.00 0.00 4.52
3086 3435 2.843401 TTTAAACTACAGCTCCGCCA 57.157 45.000 0.00 0.00 0.00 5.69
3087 3436 3.181500 CCATTTTAAACTACAGCTCCGCC 60.181 47.826 0.00 0.00 0.00 6.13
3088 3437 3.439129 ACCATTTTAAACTACAGCTCCGC 59.561 43.478 0.00 0.00 0.00 5.54
3089 3438 4.142687 CCACCATTTTAAACTACAGCTCCG 60.143 45.833 0.00 0.00 0.00 4.63
3090 3439 5.007682 TCCACCATTTTAAACTACAGCTCC 58.992 41.667 0.00 0.00 0.00 4.70
3091 3440 5.705905 ACTCCACCATTTTAAACTACAGCTC 59.294 40.000 0.00 0.00 0.00 4.09
3092 3441 5.631119 ACTCCACCATTTTAAACTACAGCT 58.369 37.500 0.00 0.00 0.00 4.24
3093 3442 5.959618 ACTCCACCATTTTAAACTACAGC 57.040 39.130 0.00 0.00 0.00 4.40
3094 3443 6.149633 GCAACTCCACCATTTTAAACTACAG 58.850 40.000 0.00 0.00 0.00 2.74
3095 3444 5.010213 GGCAACTCCACCATTTTAAACTACA 59.990 40.000 0.00 0.00 34.01 2.74
3096 3445 5.010213 TGGCAACTCCACCATTTTAAACTAC 59.990 40.000 0.00 0.00 40.72 2.73
3097 3446 5.141182 TGGCAACTCCACCATTTTAAACTA 58.859 37.500 0.00 0.00 40.72 2.24
3098 3447 3.964031 TGGCAACTCCACCATTTTAAACT 59.036 39.130 0.00 0.00 40.72 2.66
3099 3448 4.329462 TGGCAACTCCACCATTTTAAAC 57.671 40.909 0.00 0.00 40.72 2.01
3111 3460 2.092323 GAGTGGGTTAATGGCAACTCC 58.908 52.381 0.00 0.00 37.61 3.85
3112 3461 2.092323 GGAGTGGGTTAATGGCAACTC 58.908 52.381 4.97 4.97 34.62 3.01
3113 3462 1.613255 CGGAGTGGGTTAATGGCAACT 60.613 52.381 0.00 0.00 37.61 3.16
3114 3463 0.808755 CGGAGTGGGTTAATGGCAAC 59.191 55.000 0.00 0.00 0.00 4.17
3115 3464 0.963355 GCGGAGTGGGTTAATGGCAA 60.963 55.000 0.00 0.00 0.00 4.52
3116 3465 1.377987 GCGGAGTGGGTTAATGGCA 60.378 57.895 0.00 0.00 0.00 4.92
3117 3466 1.376609 CTGCGGAGTGGGTTAATGGC 61.377 60.000 0.00 0.00 0.00 4.40
3118 3467 0.251916 TCTGCGGAGTGGGTTAATGG 59.748 55.000 3.10 0.00 0.00 3.16
3119 3468 2.332063 ATCTGCGGAGTGGGTTAATG 57.668 50.000 3.10 0.00 0.00 1.90
3120 3469 2.505819 AGAATCTGCGGAGTGGGTTAAT 59.494 45.455 0.00 0.00 0.00 1.40
3121 3470 1.906574 AGAATCTGCGGAGTGGGTTAA 59.093 47.619 0.00 0.00 0.00 2.01
3122 3471 1.207089 CAGAATCTGCGGAGTGGGTTA 59.793 52.381 0.00 0.00 0.00 2.85
3123 3472 0.036010 CAGAATCTGCGGAGTGGGTT 60.036 55.000 0.00 0.00 0.00 4.11
3124 3473 1.599047 CAGAATCTGCGGAGTGGGT 59.401 57.895 0.00 0.00 0.00 4.51
3125 3474 1.153289 CCAGAATCTGCGGAGTGGG 60.153 63.158 0.00 0.00 0.00 4.61
3126 3475 1.153289 CCCAGAATCTGCGGAGTGG 60.153 63.158 0.00 7.31 0.00 4.00
3127 3476 0.179089 CTCCCAGAATCTGCGGAGTG 60.179 60.000 26.18 12.74 40.61 3.51
3128 3477 1.965754 GCTCCCAGAATCTGCGGAGT 61.966 60.000 30.44 0.00 43.88 3.85
3129 3478 1.227497 GCTCCCAGAATCTGCGGAG 60.227 63.158 28.33 28.33 44.33 4.63
3130 3479 1.964608 CTGCTCCCAGAATCTGCGGA 61.965 60.000 16.09 16.09 41.77 5.54
3131 3480 1.523258 CTGCTCCCAGAATCTGCGG 60.523 63.158 4.40 7.99 41.77 5.69
3132 3481 1.519246 TCTGCTCCCAGAATCTGCG 59.481 57.895 4.40 0.00 44.79 5.18
3139 3488 1.204146 GGTAATGGTCTGCTCCCAGA 58.796 55.000 0.00 0.00 45.54 3.86
3140 3489 0.179073 CGGTAATGGTCTGCTCCCAG 60.179 60.000 0.00 0.00 40.54 4.45
3141 3490 0.616395 TCGGTAATGGTCTGCTCCCA 60.616 55.000 0.00 0.00 36.16 4.37
3142 3491 0.539986 TTCGGTAATGGTCTGCTCCC 59.460 55.000 0.00 0.00 0.00 4.30
3143 3492 1.066430 TGTTCGGTAATGGTCTGCTCC 60.066 52.381 0.00 0.00 0.00 4.70
3144 3493 2.271800 CTGTTCGGTAATGGTCTGCTC 58.728 52.381 0.00 0.00 0.00 4.26
3145 3494 1.066143 CCTGTTCGGTAATGGTCTGCT 60.066 52.381 0.00 0.00 0.00 4.24
3146 3495 1.369625 CCTGTTCGGTAATGGTCTGC 58.630 55.000 0.00 0.00 0.00 4.26
3147 3496 2.012051 GCCCTGTTCGGTAATGGTCTG 61.012 57.143 0.00 0.00 0.00 3.51
3148 3497 0.252197 GCCCTGTTCGGTAATGGTCT 59.748 55.000 0.00 0.00 0.00 3.85
3149 3498 0.746923 GGCCCTGTTCGGTAATGGTC 60.747 60.000 0.00 0.00 0.00 4.02
3150 3499 1.205460 AGGCCCTGTTCGGTAATGGT 61.205 55.000 0.00 0.00 0.00 3.55
3151 3500 0.034477 AAGGCCCTGTTCGGTAATGG 60.034 55.000 0.00 0.00 0.00 3.16
3152 3501 2.702592 TAAGGCCCTGTTCGGTAATG 57.297 50.000 0.00 0.00 0.00 1.90
3153 3502 5.578157 AATATAAGGCCCTGTTCGGTAAT 57.422 39.130 0.00 0.00 0.00 1.89
3154 3503 5.131475 AGAAATATAAGGCCCTGTTCGGTAA 59.869 40.000 0.00 0.00 0.00 2.85
3155 3504 4.657039 AGAAATATAAGGCCCTGTTCGGTA 59.343 41.667 0.00 0.00 0.00 4.02
3156 3505 3.458487 AGAAATATAAGGCCCTGTTCGGT 59.542 43.478 0.00 0.00 0.00 4.69
3157 3506 4.086706 AGAAATATAAGGCCCTGTTCGG 57.913 45.455 0.00 0.00 0.00 4.30
3158 3507 5.855045 ACTAGAAATATAAGGCCCTGTTCG 58.145 41.667 0.00 0.00 0.00 3.95
3159 3508 9.220767 CAATACTAGAAATATAAGGCCCTGTTC 57.779 37.037 0.00 0.00 0.00 3.18
3160 3509 8.945193 TCAATACTAGAAATATAAGGCCCTGTT 58.055 33.333 0.00 0.00 0.00 3.16
3161 3510 8.506196 TCAATACTAGAAATATAAGGCCCTGT 57.494 34.615 0.00 0.00 0.00 4.00
3162 3511 9.220767 GTTCAATACTAGAAATATAAGGCCCTG 57.779 37.037 0.00 0.00 0.00 4.45
3163 3512 9.172060 AGTTCAATACTAGAAATATAAGGCCCT 57.828 33.333 0.00 0.00 34.56 5.19
3277 3852 4.116238 CAGATCTCTAAAAGCTCGGAACC 58.884 47.826 0.00 0.00 0.00 3.62
3282 3857 4.280101 TCGTCAGATCTCTAAAAGCTCG 57.720 45.455 0.00 0.00 0.00 5.03
3355 3970 8.628882 AAAGCTGTAACATGTAAAAGAAACAC 57.371 30.769 0.00 0.00 0.00 3.32
3360 3975 7.284489 AGACCAAAAGCTGTAACATGTAAAAGA 59.716 33.333 0.00 0.00 0.00 2.52
3449 4066 3.984633 GCCTAGTTTCTAAGCAGCGATAG 59.015 47.826 0.00 2.68 0.00 2.08
3456 4073 4.891992 AAGTGAGCCTAGTTTCTAAGCA 57.108 40.909 0.00 0.00 0.00 3.91
3500 4117 6.284891 TGGATTTTTGTCCTGATGGATTTC 57.715 37.500 0.00 0.00 45.29 2.17
3671 4288 2.098117 GCATCGCTTGGCATTACTTCTT 59.902 45.455 0.00 0.00 0.00 2.52
3746 4363 0.962356 CATCCTGCAGGGGTGTCAAC 60.962 60.000 32.23 0.00 41.20 3.18
3872 4489 4.221482 GCCCCTCTTGATTTTGAAACAGAT 59.779 41.667 0.00 0.00 0.00 2.90
3896 4513 1.284982 CGGGTGTTCTCTTGCAGACG 61.285 60.000 0.00 0.00 0.00 4.18
3913 4530 8.446273 CCTTGTAATCATTATAGCTTGATTCGG 58.554 37.037 13.34 7.81 40.71 4.30
3925 4542 9.474313 TTTACTTGGCTTCCTTGTAATCATTAT 57.526 29.630 0.00 0.00 0.00 1.28
3928 4545 7.669722 TCTTTTACTTGGCTTCCTTGTAATCAT 59.330 33.333 0.00 0.00 0.00 2.45
3929 4546 7.001674 TCTTTTACTTGGCTTCCTTGTAATCA 58.998 34.615 0.00 0.00 0.00 2.57
3930 4547 7.306213 GTCTTTTACTTGGCTTCCTTGTAATC 58.694 38.462 0.00 0.00 0.00 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.