Multiple sequence alignment - TraesCS7A01G131900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G131900 chr7A 100.000 2992 0 0 1 2992 85085915 85088906 0.000000e+00 5526.0
1 TraesCS7A01G131900 chr7A 86.458 96 13 0 470 565 671822369 671822464 4.080000e-19 106.0
2 TraesCS7A01G131900 chr7D 88.560 1923 85 46 405 2243 83373375 83375246 0.000000e+00 2207.0
3 TraesCS7A01G131900 chr7D 94.707 529 15 6 2468 2992 83376835 83377354 0.000000e+00 809.0
4 TraesCS7A01G131900 chr7D 94.752 343 18 0 1 343 83372942 83373284 4.390000e-148 534.0
5 TraesCS7A01G131900 chr7D 89.937 159 11 3 2241 2394 413249296 413249454 1.820000e-47 200.0
6 TraesCS7A01G131900 chr7D 87.234 94 11 1 476 568 580245926 580246019 4.080000e-19 106.0
7 TraesCS7A01G131900 chr7B 90.375 1039 51 23 580 1592 32546715 32547730 0.000000e+00 1319.0
8 TraesCS7A01G131900 chr7B 91.598 607 21 9 2395 2992 32548409 32548994 0.000000e+00 811.0
9 TraesCS7A01G131900 chr7B 92.361 576 28 8 1670 2243 32547861 32548422 0.000000e+00 806.0
10 TraesCS7A01G131900 chr7B 89.267 559 54 2 1 559 32479311 32479863 0.000000e+00 695.0
11 TraesCS7A01G131900 chr5D 92.105 152 9 1 2246 2394 411326387 411326538 8.400000e-51 211.0
12 TraesCS7A01G131900 chr5D 89.610 154 13 1 2246 2396 76972474 76972627 3.040000e-45 193.0
13 TraesCS7A01G131900 chr5D 87.640 89 11 0 474 562 550573116 550573204 1.470000e-18 104.0
14 TraesCS7A01G131900 chr5D 82.051 78 10 3 108 183 550560594 550560669 2.490000e-06 63.9
15 TraesCS7A01G131900 chrUn 90.850 153 11 3 2245 2394 64153325 64153173 5.060000e-48 202.0
16 TraesCS7A01G131900 chr4D 90.385 156 11 2 2243 2394 351463801 351463646 5.060000e-48 202.0
17 TraesCS7A01G131900 chr4D 90.323 155 11 2 2244 2394 447293658 447293812 1.820000e-47 200.0
18 TraesCS7A01G131900 chr1A 90.260 154 12 1 2244 2394 104919009 104918856 6.540000e-47 198.0
19 TraesCS7A01G131900 chr1D 89.172 157 14 1 2244 2397 367162685 367162529 3.040000e-45 193.0
20 TraesCS7A01G131900 chr1D 89.103 156 13 2 2246 2398 463344454 463344300 1.090000e-44 191.0
21 TraesCS7A01G131900 chr6D 89.130 92 10 0 474 565 37455982 37455891 6.780000e-22 115.0
22 TraesCS7A01G131900 chr6D 87.234 94 10 2 474 565 138667673 138667766 4.080000e-19 106.0
23 TraesCS7A01G131900 chr1B 88.732 71 7 1 1194 1263 42577627 42577697 5.310000e-13 86.1
24 TraesCS7A01G131900 chr2B 86.842 76 9 1 1189 1263 6767130 6767055 1.910000e-12 84.2
25 TraesCS7A01G131900 chr2B 86.842 76 9 1 1189 1263 6815066 6814991 1.910000e-12 84.2
26 TraesCS7A01G131900 chr2B 86.842 76 9 1 1189 1263 6902529 6902454 1.910000e-12 84.2
27 TraesCS7A01G131900 chr4B 89.091 55 5 1 513 566 94791902 94791956 1.920000e-07 67.6
28 TraesCS7A01G131900 chr3A 97.222 36 1 0 515 550 75563803 75563838 8.960000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G131900 chr7A 85085915 85088906 2991 False 5526.000000 5526 100.000000 1 2992 1 chr7A.!!$F1 2991
1 TraesCS7A01G131900 chr7D 83372942 83377354 4412 False 1183.333333 2207 92.673000 1 2992 3 chr7D.!!$F3 2991
2 TraesCS7A01G131900 chr7B 32546715 32548994 2279 False 978.666667 1319 91.444667 580 2992 3 chr7B.!!$F2 2412
3 TraesCS7A01G131900 chr7B 32479311 32479863 552 False 695.000000 695 89.267000 1 559 1 chr7B.!!$F1 558

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
343 344 0.034337 GCAAACTGTGTCCGGACCTA 59.966 55.0 31.19 18.66 0.0 3.08 F
1379 1455 0.250295 TGCAACTCCAAACTCCTCGG 60.250 55.0 0.00 0.00 0.0 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1416 1492 0.036590 TTAACTACGCACCCCAACCC 59.963 55.0 0.0 0.0 0.0 4.11 R
2336 2522 0.106918 TTGCCAGTCCAACCGAGTTT 60.107 50.0 0.0 0.0 0.0 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.456705 GAGGCCTCCTCCATCGTCT 60.457 63.158 23.19 0.00 44.36 4.18
33 34 1.114627 CCTCCATCGTCTGGTCATCA 58.885 55.000 6.66 0.00 46.08 3.07
54 55 1.110442 CGGAGACCTCTGCATTCTCT 58.890 55.000 12.10 0.41 36.73 3.10
81 82 1.080434 GCCGCTTCAAGACGACTCT 60.080 57.895 3.20 0.00 0.00 3.24
190 191 0.037590 TTCACACGGGAGGGGATTTG 59.962 55.000 0.00 0.00 37.82 2.32
193 194 2.126372 ACGGGAGGGGATTTGGGA 59.874 61.111 0.00 0.00 0.00 4.37
224 225 3.564027 GCTGATGCGTACGTGGCC 61.564 66.667 17.90 0.00 0.00 5.36
256 257 2.044451 CGCAAAGCCCCCATGGTA 60.044 61.111 11.73 0.00 36.04 3.25
269 270 2.420827 CCCATGGTATGTGTCCGCTTTA 60.421 50.000 11.73 0.00 0.00 1.85
286 287 3.668757 GCTTTACGGGAAAACGGACATTC 60.669 47.826 0.00 0.00 38.39 2.67
287 288 2.835580 TACGGGAAAACGGACATTCA 57.164 45.000 0.00 0.00 38.39 2.57
308 309 0.250124 ACCAGTTTGCGAACCGATGA 60.250 50.000 13.41 0.00 36.39 2.92
315 316 4.110482 GTTTGCGAACCGATGAGTACTAT 58.890 43.478 5.42 0.00 0.00 2.12
343 344 0.034337 GCAAACTGTGTCCGGACCTA 59.966 55.000 31.19 18.66 0.00 3.08
344 345 1.939838 GCAAACTGTGTCCGGACCTAG 60.940 57.143 31.19 27.75 0.00 3.02
377 378 2.415426 GTTGCGGGTGGTTTGTGG 59.585 61.111 0.00 0.00 0.00 4.17
421 451 5.892568 AGTACTTAGATTCTAGTTGCACCG 58.107 41.667 0.00 0.00 0.00 4.94
425 455 1.276421 AGATTCTAGTTGCACCGCTGT 59.724 47.619 0.00 0.00 0.00 4.40
426 456 1.661112 GATTCTAGTTGCACCGCTGTC 59.339 52.381 0.00 0.00 0.00 3.51
441 471 2.730715 CGCTGTCTCTCTTAGAGCACAC 60.731 54.545 4.03 1.68 42.04 3.82
472 502 5.246145 TGACGGAAAATTTTAACGTGGTT 57.754 34.783 27.41 11.12 35.13 3.67
511 542 9.155975 GATCAACGCCTCATATCTATTTTGTAT 57.844 33.333 0.00 0.00 0.00 2.29
532 563 9.567776 TTGTATTCTTACCTCTCATGTGAAAAA 57.432 29.630 0.00 0.00 0.00 1.94
573 604 6.535150 CCTCGTTAAAACTGCTCTCATATGAA 59.465 38.462 6.90 0.00 0.00 2.57
574 605 7.290857 TCGTTAAAACTGCTCTCATATGAAC 57.709 36.000 6.90 0.22 0.00 3.18
575 606 6.871492 TCGTTAAAACTGCTCTCATATGAACA 59.129 34.615 6.90 4.90 0.00 3.18
576 607 7.549134 TCGTTAAAACTGCTCTCATATGAACAT 59.451 33.333 6.90 0.00 0.00 2.71
577 608 8.817100 CGTTAAAACTGCTCTCATATGAACATA 58.183 33.333 6.90 0.00 0.00 2.29
587 620 8.997323 GCTCTCATATGAACATATATATTGGCC 58.003 37.037 6.90 0.00 33.01 5.36
690 723 1.144276 GCTAGCGGAGAGAAACCCC 59.856 63.158 0.00 0.00 0.00 4.95
720 769 3.463505 GCATATGGCGGTCGATCG 58.536 61.111 15.15 15.15 0.00 3.69
721 770 2.094659 GCATATGGCGGTCGATCGG 61.095 63.158 21.29 2.52 0.00 4.18
800 849 0.735978 TGGAGCACGTTACGCTGATG 60.736 55.000 4.09 0.00 40.63 3.07
802 851 1.346365 GAGCACGTTACGCTGATGAA 58.654 50.000 4.09 0.00 40.63 2.57
893 942 0.537188 TCAGAAGTCAGAATCGGGGC 59.463 55.000 0.00 0.00 0.00 5.80
914 963 2.541794 CGATAGCGATACATCCATCGGG 60.542 54.545 0.00 0.00 46.20 5.14
963 1012 4.691359 ACCTCCCACGTACGCCCT 62.691 66.667 16.72 0.00 0.00 5.19
964 1013 2.440796 CCTCCCACGTACGCCCTA 60.441 66.667 16.72 0.00 0.00 3.53
965 1014 2.487532 CCTCCCACGTACGCCCTAG 61.488 68.421 16.72 8.17 0.00 3.02
966 1015 3.135056 CTCCCACGTACGCCCTAGC 62.135 68.421 16.72 0.00 0.00 3.42
970 1019 3.207669 ACGTACGCCCTAGCTCCG 61.208 66.667 16.72 0.00 36.60 4.63
990 1039 3.556423 CCGTCTATATAAACCCCTGCACC 60.556 52.174 0.00 0.00 0.00 5.01
991 1040 3.556423 CGTCTATATAAACCCCTGCACCC 60.556 52.174 0.00 0.00 0.00 4.61
993 1042 0.857675 ATATAAACCCCTGCACCCCC 59.142 55.000 0.00 0.00 0.00 5.40
994 1043 1.637724 TATAAACCCCTGCACCCCCG 61.638 60.000 0.00 0.00 0.00 5.73
1012 1061 3.322466 CCCCAGCGGTTCAGGACT 61.322 66.667 0.00 0.00 0.00 3.85
1026 1075 2.143122 CAGGACTAGCTAGCTCTCTCG 58.857 57.143 23.26 8.32 0.00 4.04
1046 1095 3.849951 CGTCTCCCCACCCCATCG 61.850 72.222 0.00 0.00 0.00 3.84
1058 1134 1.227823 CCCATCGCCCGAATTAGCA 60.228 57.895 0.00 0.00 0.00 3.49
1082 1158 3.095332 TGTGTGAGAGAGATCTTGAGGG 58.905 50.000 0.00 0.00 0.00 4.30
1379 1455 0.250295 TGCAACTCCAAACTCCTCGG 60.250 55.000 0.00 0.00 0.00 4.63
1416 1492 1.078709 CTTCTGTGTATGGTGCACCG 58.921 55.000 30.07 14.45 39.43 4.94
1435 1511 0.036590 GGGTTGGGGTGCGTAGTTAA 59.963 55.000 0.00 0.00 0.00 2.01
1446 1526 4.036352 GTGCGTAGTTAACTAGCTAGCTG 58.964 47.826 27.68 18.34 0.00 4.24
1534 1614 3.127533 GCAGCGGCAGTGGGTTAG 61.128 66.667 3.18 0.00 40.72 2.34
1535 1615 2.347490 CAGCGGCAGTGGGTTAGT 59.653 61.111 1.45 0.00 0.00 2.24
1536 1616 1.594833 CAGCGGCAGTGGGTTAGTA 59.405 57.895 1.45 0.00 0.00 1.82
1537 1617 0.460284 CAGCGGCAGTGGGTTAGTAG 60.460 60.000 1.45 0.00 0.00 2.57
1538 1618 0.903454 AGCGGCAGTGGGTTAGTAGT 60.903 55.000 1.45 0.00 0.00 2.73
1598 1728 0.450184 AGTTTGTGTGTGTCAACGGC 59.550 50.000 0.00 0.00 0.00 5.68
1599 1729 0.169230 GTTTGTGTGTGTCAACGGCA 59.831 50.000 0.00 0.00 0.00 5.69
1600 1730 0.449786 TTTGTGTGTGTCAACGGCAG 59.550 50.000 0.00 0.00 0.00 4.85
1621 1751 2.022129 GTCTGGTGCGTGTCTTCCG 61.022 63.158 0.00 0.00 0.00 4.30
1623 1753 2.022129 CTGGTGCGTGTCTTCCGAC 61.022 63.158 0.00 0.00 40.64 4.79
1768 1940 0.971959 TTCATGCATGGCCCCTTGAC 60.972 55.000 25.97 0.00 0.00 3.18
1801 1973 5.231991 CCAAACTTCAGAAACAAAATCGGTG 59.768 40.000 0.00 0.00 0.00 4.94
1805 1977 0.966179 AGAAACAAAATCGGTGCCCC 59.034 50.000 0.00 0.00 0.00 5.80
1807 1979 0.678950 AAACAAAATCGGTGCCCCAG 59.321 50.000 0.00 0.00 0.00 4.45
1808 1980 0.178975 AACAAAATCGGTGCCCCAGA 60.179 50.000 0.00 0.00 0.00 3.86
1809 1981 0.893727 ACAAAATCGGTGCCCCAGAC 60.894 55.000 0.00 0.00 0.00 3.51
1810 1982 1.674322 AAAATCGGTGCCCCAGACG 60.674 57.895 0.00 0.00 0.00 4.18
1840 2012 6.584184 CACGATTTACCATGCAAAATGTAACA 59.416 34.615 7.88 0.00 0.00 2.41
1847 2019 7.565323 ACCATGCAAAATGTAACACAAATTT 57.435 28.000 0.00 0.00 0.00 1.82
1848 2020 7.994194 ACCATGCAAAATGTAACACAAATTTT 58.006 26.923 0.00 0.00 34.63 1.82
1849 2021 8.465201 ACCATGCAAAATGTAACACAAATTTTT 58.535 25.926 0.00 0.00 32.58 1.94
1850 2022 9.941664 CCATGCAAAATGTAACACAAATTTTTA 57.058 25.926 0.00 0.00 32.58 1.52
2085 2263 1.338200 ACACCGATCTTGACTGGCTTC 60.338 52.381 0.00 0.00 0.00 3.86
2098 2276 2.423446 GCTTCGGCTCCATCGGAT 59.577 61.111 0.00 0.00 38.08 4.18
2099 2277 1.666234 GCTTCGGCTCCATCGGATC 60.666 63.158 0.00 0.00 38.08 3.36
2116 2294 2.615912 GGATCTTAGTCTTGCATGCCAC 59.384 50.000 16.68 9.31 0.00 5.01
2160 2338 2.575532 TGAACCTGCCTTGTTCTTGAG 58.424 47.619 10.29 0.00 42.04 3.02
2190 2368 1.153549 GAACCTGCCTCAGCTACCG 60.154 63.158 0.00 0.00 40.80 4.02
2235 2421 7.885922 AGTAAAACACCATCCATATACAACACA 59.114 33.333 0.00 0.00 0.00 3.72
2236 2422 6.757897 AAACACCATCCATATACAACACAG 57.242 37.500 0.00 0.00 0.00 3.66
2237 2423 4.780815 ACACCATCCATATACAACACAGG 58.219 43.478 0.00 0.00 0.00 4.00
2238 2424 4.473196 ACACCATCCATATACAACACAGGA 59.527 41.667 0.00 0.00 0.00 3.86
2239 2425 5.045213 ACACCATCCATATACAACACAGGAA 60.045 40.000 0.00 0.00 0.00 3.36
2240 2426 5.528690 CACCATCCATATACAACACAGGAAG 59.471 44.000 0.00 0.00 0.00 3.46
2241 2427 5.191722 ACCATCCATATACAACACAGGAAGT 59.808 40.000 0.00 0.00 0.00 3.01
2242 2428 6.385759 ACCATCCATATACAACACAGGAAGTA 59.614 38.462 0.00 0.00 0.00 2.24
2243 2429 7.092623 ACCATCCATATACAACACAGGAAGTAA 60.093 37.037 0.00 0.00 0.00 2.24
2244 2430 7.773224 CCATCCATATACAACACAGGAAGTAAA 59.227 37.037 0.00 0.00 0.00 2.01
2245 2431 9.173021 CATCCATATACAACACAGGAAGTAAAA 57.827 33.333 0.00 0.00 0.00 1.52
2246 2432 9.747898 ATCCATATACAACACAGGAAGTAAAAA 57.252 29.630 0.00 0.00 0.00 1.94
2268 2454 2.200373 AAAATGAGACCAACCCGAGG 57.800 50.000 0.00 0.00 0.00 4.63
2269 2455 0.328258 AAATGAGACCAACCCGAGGG 59.672 55.000 6.63 6.63 42.03 4.30
2270 2456 2.198304 AATGAGACCAACCCGAGGGC 62.198 60.000 8.33 0.00 39.32 5.19
2272 2458 2.448383 AGACCAACCCGAGGGCTA 59.552 61.111 8.33 0.00 44.68 3.93
2273 2459 1.229400 AGACCAACCCGAGGGCTAA 60.229 57.895 8.33 0.00 44.68 3.09
2274 2460 1.078637 GACCAACCCGAGGGCTAAC 60.079 63.158 8.33 0.00 39.32 2.34
2275 2461 2.271173 CCAACCCGAGGGCTAACC 59.729 66.667 8.33 0.00 39.32 2.85
2290 2476 2.779506 CTAACCCTCGTTGGCTTTTCT 58.220 47.619 0.00 0.00 33.17 2.52
2291 2477 2.067365 AACCCTCGTTGGCTTTTCTT 57.933 45.000 0.00 0.00 0.00 2.52
2292 2478 2.067365 ACCCTCGTTGGCTTTTCTTT 57.933 45.000 0.00 0.00 0.00 2.52
2293 2479 3.217681 ACCCTCGTTGGCTTTTCTTTA 57.782 42.857 0.00 0.00 0.00 1.85
2294 2480 3.763057 ACCCTCGTTGGCTTTTCTTTAT 58.237 40.909 0.00 0.00 0.00 1.40
2295 2481 4.913784 ACCCTCGTTGGCTTTTCTTTATA 58.086 39.130 0.00 0.00 0.00 0.98
2296 2482 4.941873 ACCCTCGTTGGCTTTTCTTTATAG 59.058 41.667 0.00 0.00 0.00 1.31
2297 2483 4.335594 CCCTCGTTGGCTTTTCTTTATAGG 59.664 45.833 0.00 0.00 0.00 2.57
2298 2484 5.183228 CCTCGTTGGCTTTTCTTTATAGGA 58.817 41.667 0.00 0.00 0.00 2.94
2299 2485 5.294552 CCTCGTTGGCTTTTCTTTATAGGAG 59.705 44.000 0.00 0.00 0.00 3.69
2300 2486 6.045072 TCGTTGGCTTTTCTTTATAGGAGA 57.955 37.500 0.00 0.00 0.00 3.71
2301 2487 6.469410 TCGTTGGCTTTTCTTTATAGGAGAA 58.531 36.000 0.00 0.00 0.00 2.87
2302 2488 6.938030 TCGTTGGCTTTTCTTTATAGGAGAAA 59.062 34.615 8.49 8.49 40.36 2.52
2303 2489 7.021790 CGTTGGCTTTTCTTTATAGGAGAAAC 58.978 38.462 10.98 4.09 41.42 2.78
2304 2490 7.094762 CGTTGGCTTTTCTTTATAGGAGAAACT 60.095 37.037 10.98 0.00 41.42 2.66
2305 2491 7.923414 TGGCTTTTCTTTATAGGAGAAACTC 57.077 36.000 10.98 0.00 41.42 3.01
2314 2500 3.842869 GGAGAAACTCCGTGAGCAT 57.157 52.632 1.97 0.00 41.08 3.79
2315 2501 1.646189 GGAGAAACTCCGTGAGCATC 58.354 55.000 1.97 1.17 41.08 3.91
2316 2502 1.066858 GGAGAAACTCCGTGAGCATCA 60.067 52.381 1.97 0.00 41.62 3.07
2339 2525 3.047877 CCGTGCCGGGACTCAAAC 61.048 66.667 24.50 0.00 44.15 2.93
2340 2526 2.030562 CGTGCCGGGACTCAAACT 59.969 61.111 24.50 0.00 0.00 2.66
2341 2527 2.027625 CGTGCCGGGACTCAAACTC 61.028 63.158 24.50 0.00 0.00 3.01
2342 2528 2.027625 GTGCCGGGACTCAAACTCG 61.028 63.158 20.19 0.00 0.00 4.18
2344 2530 3.057337 CCGGGACTCAAACTCGGT 58.943 61.111 0.00 0.00 45.10 4.69
2345 2531 1.370064 CCGGGACTCAAACTCGGTT 59.630 57.895 0.00 0.00 45.10 4.44
2346 2532 0.949105 CCGGGACTCAAACTCGGTTG 60.949 60.000 0.00 0.00 45.10 3.77
2347 2533 0.949105 CGGGACTCAAACTCGGTTGG 60.949 60.000 0.00 0.00 0.00 3.77
2348 2534 0.395312 GGGACTCAAACTCGGTTGGA 59.605 55.000 0.00 0.00 0.00 3.53
2349 2535 1.509703 GGACTCAAACTCGGTTGGAC 58.490 55.000 0.00 0.00 0.00 4.02
2350 2536 1.070289 GGACTCAAACTCGGTTGGACT 59.930 52.381 0.00 0.00 0.00 3.85
2351 2537 2.135933 GACTCAAACTCGGTTGGACTG 58.864 52.381 0.00 0.00 0.00 3.51
2352 2538 1.202651 ACTCAAACTCGGTTGGACTGG 60.203 52.381 0.00 0.00 0.00 4.00
2353 2539 0.534203 TCAAACTCGGTTGGACTGGC 60.534 55.000 0.00 0.00 0.00 4.85
2354 2540 0.817634 CAAACTCGGTTGGACTGGCA 60.818 55.000 0.00 0.00 0.00 4.92
2355 2541 0.106918 AAACTCGGTTGGACTGGCAA 60.107 50.000 0.00 0.00 0.00 4.52
2356 2542 0.818040 AACTCGGTTGGACTGGCAAC 60.818 55.000 0.00 0.00 0.00 4.17
2370 2556 1.460504 GGCAACAACCTTAGCTACCC 58.539 55.000 0.00 0.00 0.00 3.69
2371 2557 1.271707 GGCAACAACCTTAGCTACCCA 60.272 52.381 0.00 0.00 0.00 4.51
2372 2558 2.510613 GCAACAACCTTAGCTACCCAA 58.489 47.619 0.00 0.00 0.00 4.12
2373 2559 2.228103 GCAACAACCTTAGCTACCCAAC 59.772 50.000 0.00 0.00 0.00 3.77
2374 2560 2.817844 CAACAACCTTAGCTACCCAACC 59.182 50.000 0.00 0.00 0.00 3.77
2375 2561 2.059490 ACAACCTTAGCTACCCAACCA 58.941 47.619 0.00 0.00 0.00 3.67
2376 2562 2.039879 ACAACCTTAGCTACCCAACCAG 59.960 50.000 0.00 0.00 0.00 4.00
2377 2563 0.618981 ACCTTAGCTACCCAACCAGC 59.381 55.000 0.00 0.00 38.09 4.85
2379 2565 1.134371 CCTTAGCTACCCAACCAGCTC 60.134 57.143 0.00 0.00 44.83 4.09
2380 2566 0.535335 TTAGCTACCCAACCAGCTCG 59.465 55.000 0.00 0.00 44.83 5.03
2381 2567 0.323999 TAGCTACCCAACCAGCTCGA 60.324 55.000 0.00 0.00 44.83 4.04
2382 2568 1.448013 GCTACCCAACCAGCTCGAC 60.448 63.158 0.00 0.00 34.86 4.20
2383 2569 1.153823 CTACCCAACCAGCTCGACG 60.154 63.158 0.00 0.00 0.00 5.12
2384 2570 3.291101 TACCCAACCAGCTCGACGC 62.291 63.158 0.00 0.00 39.57 5.19
2400 2586 3.948719 GCCCCGTCCTCCAACACA 61.949 66.667 0.00 0.00 0.00 3.72
2409 2595 2.028020 GTCCTCCAACACAGGAAGTAGG 60.028 54.545 0.00 0.00 41.94 3.18
2427 2613 1.298014 GAGTGTGCAAGCTAGGCCT 59.702 57.895 11.78 11.78 0.00 5.19
2428 2614 1.002868 AGTGTGCAAGCTAGGCCTG 60.003 57.895 17.99 6.68 0.00 4.85
2429 2615 2.360350 TGTGCAAGCTAGGCCTGC 60.360 61.111 17.99 17.14 45.11 4.85
2621 4342 5.450412 CCTGCAGTGAGAGAGTAAAGATCTC 60.450 48.000 13.81 0.00 42.95 2.75
2702 4423 1.530293 GCAAGTGTTCAGAGCTCACAG 59.470 52.381 17.77 5.46 34.94 3.66
2715 4436 1.338484 GCTCACAGCTCAGATGGTTGA 60.338 52.381 0.00 0.00 38.45 3.18
2717 4438 3.607741 CTCACAGCTCAGATGGTTGATT 58.392 45.455 0.00 0.00 0.00 2.57
2726 4447 3.119137 TCAGATGGTTGATTCGACGTCAT 60.119 43.478 17.16 1.66 0.00 3.06
2759 4480 2.864343 GTTTGTTACGATCCTGATCCGG 59.136 50.000 0.00 0.00 34.40 5.14
2873 4597 2.496070 TCAGACTTGAATCGGTACCCAG 59.504 50.000 6.25 0.00 0.00 4.45
2977 4708 0.722469 GTTTCACATGCGAGCACGTG 60.722 55.000 16.84 16.84 40.91 4.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.686052 GAGAATGCAGAGGTCTCCGAT 59.314 52.381 7.81 0.00 33.16 4.18
81 82 1.725557 GCGGATGCGACCTCTCACTA 61.726 60.000 12.10 0.00 0.00 2.74
163 164 0.249868 CTCCCGTGTGAAGCAGTTGA 60.250 55.000 0.00 0.00 0.00 3.18
269 270 1.071071 TCTGAATGTCCGTTTTCCCGT 59.929 47.619 0.00 0.00 0.00 5.28
286 287 0.878523 TCGGTTCGCAAACTGGTCTG 60.879 55.000 0.00 0.00 41.35 3.51
287 288 0.034896 ATCGGTTCGCAAACTGGTCT 59.965 50.000 0.00 0.00 41.35 3.85
308 309 6.317140 CACAGTTTGCCATTCATCATAGTACT 59.683 38.462 0.00 0.00 0.00 2.73
315 316 2.557924 GGACACAGTTTGCCATTCATCA 59.442 45.455 0.00 0.00 0.00 3.07
343 344 2.820479 CCGTCGAGACCGAGAGCT 60.820 66.667 0.00 0.00 46.52 4.09
344 345 2.688794 AACCGTCGAGACCGAGAGC 61.689 63.158 0.00 0.00 46.52 4.09
377 378 2.191128 AGGGCATCTTCAACACAGAC 57.809 50.000 0.00 0.00 0.00 3.51
421 451 2.416701 GGTGTGCTCTAAGAGAGACAGC 60.417 54.545 13.70 13.70 45.07 4.40
425 455 4.089361 TGATTGGTGTGCTCTAAGAGAGA 58.911 43.478 8.67 0.00 45.07 3.10
426 456 4.462508 TGATTGGTGTGCTCTAAGAGAG 57.537 45.455 4.34 4.34 45.04 3.20
441 471 8.742188 CGTTAAAATTTTCCGTCATATGATTGG 58.258 33.333 16.88 16.88 0.00 3.16
472 502 7.722363 TGAGGCGTTGATCTCATTAATTAGTA 58.278 34.615 0.00 0.00 35.37 1.82
550 581 6.871492 TGTTCATATGAGAGCAGTTTTAACGA 59.129 34.615 5.39 0.00 0.00 3.85
551 582 7.060600 TGTTCATATGAGAGCAGTTTTAACG 57.939 36.000 5.39 0.00 0.00 3.18
690 723 0.248336 CATATGCAACCTGCTGCGTG 60.248 55.000 0.00 0.00 45.74 5.34
718 767 1.900351 CTGCATGACTTCTCCCCGA 59.100 57.895 0.00 0.00 0.00 5.14
719 768 1.817099 GCTGCATGACTTCTCCCCG 60.817 63.158 0.00 0.00 0.00 5.73
720 769 0.322816 TTGCTGCATGACTTCTCCCC 60.323 55.000 1.84 0.00 0.00 4.81
721 770 1.093159 CTTGCTGCATGACTTCTCCC 58.907 55.000 9.72 0.00 0.00 4.30
893 942 2.541794 CCCGATGGATGTATCGCTATCG 60.542 54.545 0.00 0.00 46.36 2.92
963 1012 5.014858 CAGGGGTTTATATAGACGGAGCTA 58.985 45.833 0.00 0.00 0.00 3.32
964 1013 3.833070 CAGGGGTTTATATAGACGGAGCT 59.167 47.826 0.00 0.00 0.00 4.09
965 1014 3.616802 GCAGGGGTTTATATAGACGGAGC 60.617 52.174 0.00 0.00 0.00 4.70
966 1015 3.576982 TGCAGGGGTTTATATAGACGGAG 59.423 47.826 0.00 0.00 0.00 4.63
970 1019 3.244805 GGGGTGCAGGGGTTTATATAGAC 60.245 52.174 0.00 0.00 0.00 2.59
996 1045 1.517832 CTAGTCCTGAACCGCTGGG 59.482 63.158 0.00 0.00 36.34 4.45
1000 1049 0.249114 GCTAGCTAGTCCTGAACCGC 60.249 60.000 21.62 0.56 0.00 5.68
1002 1051 2.621526 GAGAGCTAGCTAGTCCTGAACC 59.378 54.545 19.38 0.40 0.00 3.62
1003 1052 3.551846 AGAGAGCTAGCTAGTCCTGAAC 58.448 50.000 19.38 1.23 0.00 3.18
1004 1053 3.742954 CGAGAGAGCTAGCTAGTCCTGAA 60.743 52.174 19.38 0.00 0.00 3.02
1005 1054 2.224185 CGAGAGAGCTAGCTAGTCCTGA 60.224 54.545 19.38 0.00 0.00 3.86
1007 1056 1.071699 CCGAGAGAGCTAGCTAGTCCT 59.928 57.143 19.38 17.51 0.00 3.85
1008 1057 1.519408 CCGAGAGAGCTAGCTAGTCC 58.481 60.000 19.38 13.35 0.00 3.85
1012 1061 1.598407 CGGCCGAGAGAGCTAGCTA 60.598 63.158 24.07 0.00 0.00 3.32
1042 1091 1.003545 CACTTGCTAATTCGGGCGATG 60.004 52.381 0.00 0.00 0.00 3.84
1043 1092 1.299541 CACTTGCTAATTCGGGCGAT 58.700 50.000 0.00 0.00 0.00 4.58
1044 1093 0.036765 ACACTTGCTAATTCGGGCGA 60.037 50.000 0.00 0.00 0.00 5.54
1046 1095 1.135689 CACACACTTGCTAATTCGGGC 60.136 52.381 0.00 0.00 0.00 6.13
1048 1097 3.325870 TCTCACACACTTGCTAATTCGG 58.674 45.455 0.00 0.00 0.00 4.30
1058 1134 4.220382 CCTCAAGATCTCTCTCACACACTT 59.780 45.833 0.00 0.00 0.00 3.16
1379 1455 2.083522 GCTAGATCATCGTCGGCGC 61.084 63.158 3.52 0.00 38.14 6.53
1390 1466 4.054671 GCACCATACACAGAAGCTAGATC 58.945 47.826 0.00 0.00 0.00 2.75
1416 1492 0.036590 TTAACTACGCACCCCAACCC 59.963 55.000 0.00 0.00 0.00 4.11
1435 1511 5.205056 AGGTAAATCACTCAGCTAGCTAGT 58.795 41.667 18.86 17.33 0.00 2.57
1473 1553 4.563184 CGACCACAAGCTCATAGAAGTAAC 59.437 45.833 0.00 0.00 0.00 2.50
1474 1554 4.461431 TCGACCACAAGCTCATAGAAGTAA 59.539 41.667 0.00 0.00 0.00 2.24
1475 1555 4.014406 TCGACCACAAGCTCATAGAAGTA 58.986 43.478 0.00 0.00 0.00 2.24
1476 1556 2.826128 TCGACCACAAGCTCATAGAAGT 59.174 45.455 0.00 0.00 0.00 3.01
1482 1562 0.179100 CCGATCGACCACAAGCTCAT 60.179 55.000 18.66 0.00 0.00 2.90
1534 1614 7.327275 AGCGTACGTAGACATATACTACACTAC 59.673 40.741 17.90 12.42 39.82 2.73
1535 1615 7.371159 AGCGTACGTAGACATATACTACACTA 58.629 38.462 17.90 5.50 39.82 2.74
1536 1616 6.219473 AGCGTACGTAGACATATACTACACT 58.781 40.000 17.90 0.00 39.82 3.55
1537 1617 6.144563 TGAGCGTACGTAGACATATACTACAC 59.855 42.308 17.90 8.59 39.82 2.90
1538 1618 6.215845 TGAGCGTACGTAGACATATACTACA 58.784 40.000 17.90 0.00 39.82 2.74
1598 1728 2.016704 GACACGCACCAGACGACTG 61.017 63.158 7.98 7.98 43.12 3.51
1599 1729 1.735376 AAGACACGCACCAGACGACT 61.735 55.000 0.00 0.00 0.00 4.18
1600 1730 1.276145 GAAGACACGCACCAGACGAC 61.276 60.000 0.00 0.00 0.00 4.34
1621 1751 5.917541 TCACAAATCTTACAGAAACGGTC 57.082 39.130 0.00 0.00 0.00 4.79
1623 1753 6.300354 AGTTCACAAATCTTACAGAAACGG 57.700 37.500 0.00 0.00 0.00 4.44
1768 1940 9.743057 TTTGTTTCTGAAGTTTGGTACATTATG 57.257 29.630 0.00 0.00 39.30 1.90
1801 1973 2.798148 ATCGTGAAACCGTCTGGGGC 62.798 60.000 0.00 0.00 41.60 5.80
1805 1977 3.061322 TGGTAAATCGTGAAACCGTCTG 58.939 45.455 0.00 0.00 34.60 3.51
1807 1979 3.726782 GCATGGTAAATCGTGAAACCGTC 60.727 47.826 0.00 0.00 34.60 4.79
1808 1980 2.160813 GCATGGTAAATCGTGAAACCGT 59.839 45.455 0.00 0.00 34.60 4.83
1809 1981 2.160615 TGCATGGTAAATCGTGAAACCG 59.839 45.455 0.00 0.00 34.60 4.44
1810 1982 3.840890 TGCATGGTAAATCGTGAAACC 57.159 42.857 0.00 0.00 0.00 3.27
1812 1984 6.219473 ACATTTTGCATGGTAAATCGTGAAA 58.781 32.000 0.00 0.00 0.00 2.69
1850 2022 9.762933 AGTAAATTGTAATCACTTGCATGTTTT 57.237 25.926 1.83 3.12 0.00 2.43
1899 2075 1.191096 CGCAGGCGCACATAATTTTC 58.809 50.000 10.83 0.00 38.40 2.29
1962 2138 8.709646 CATCATGGATATGTATTGCAGATATCG 58.290 37.037 0.00 0.00 39.64 2.92
1973 2149 6.546772 TGCACAAACACATCATGGATATGTAT 59.453 34.615 0.00 0.00 35.82 2.29
1976 2152 5.251601 TGCACAAACACATCATGGATATG 57.748 39.130 0.00 0.00 35.57 1.78
2021 2197 6.037500 CACATCTTGTATAGTTCACACCATGG 59.962 42.308 11.19 11.19 0.00 3.66
2085 2263 0.962489 ACTAAGATCCGATGGAGCCG 59.038 55.000 0.00 0.00 39.17 5.52
2098 2276 1.675714 CGGTGGCATGCAAGACTAAGA 60.676 52.381 21.36 0.00 0.00 2.10
2099 2277 0.729116 CGGTGGCATGCAAGACTAAG 59.271 55.000 21.36 5.29 0.00 2.18
2116 2294 1.597027 ACTTGCTCGGTTCCAACGG 60.597 57.895 0.00 0.00 0.00 4.44
2190 2368 6.693315 TTACTTTTACATATGCTTCCAGCC 57.307 37.500 1.58 0.00 41.51 4.85
2207 2385 9.303116 TGTTGTATATGGATGGTGTTTTACTTT 57.697 29.630 0.00 0.00 0.00 2.66
2208 2386 8.736244 GTGTTGTATATGGATGGTGTTTTACTT 58.264 33.333 0.00 0.00 0.00 2.24
2209 2387 7.885922 TGTGTTGTATATGGATGGTGTTTTACT 59.114 33.333 0.00 0.00 0.00 2.24
2210 2388 8.046294 TGTGTTGTATATGGATGGTGTTTTAC 57.954 34.615 0.00 0.00 0.00 2.01
2248 2434 2.514803 CCTCGGGTTGGTCTCATTTTT 58.485 47.619 0.00 0.00 0.00 1.94
2249 2435 1.271926 CCCTCGGGTTGGTCTCATTTT 60.272 52.381 0.00 0.00 0.00 1.82
2250 2436 0.328258 CCCTCGGGTTGGTCTCATTT 59.672 55.000 0.00 0.00 0.00 2.32
2251 2437 1.991230 CCCTCGGGTTGGTCTCATT 59.009 57.895 0.00 0.00 0.00 2.57
2252 2438 2.670148 GCCCTCGGGTTGGTCTCAT 61.670 63.158 3.54 0.00 37.65 2.90
2253 2439 2.449967 TAGCCCTCGGGTTGGTCTCA 62.450 60.000 3.54 0.00 37.65 3.27
2254 2440 1.262640 TTAGCCCTCGGGTTGGTCTC 61.263 60.000 3.54 0.00 37.65 3.36
2255 2441 1.229400 TTAGCCCTCGGGTTGGTCT 60.229 57.895 3.54 0.00 37.65 3.85
2256 2442 1.078637 GTTAGCCCTCGGGTTGGTC 60.079 63.158 3.54 0.00 37.65 4.02
2257 2443 2.599757 GGTTAGCCCTCGGGTTGGT 61.600 63.158 3.54 0.00 37.65 3.67
2258 2444 2.271173 GGTTAGCCCTCGGGTTGG 59.729 66.667 3.54 0.00 37.65 3.77
2274 2460 4.335594 CCTATAAAGAAAAGCCAACGAGGG 59.664 45.833 0.00 0.00 38.09 4.30
2275 2461 5.183228 TCCTATAAAGAAAAGCCAACGAGG 58.817 41.667 0.00 0.00 41.84 4.63
2276 2462 6.106673 TCTCCTATAAAGAAAAGCCAACGAG 58.893 40.000 0.00 0.00 0.00 4.18
2277 2463 6.045072 TCTCCTATAAAGAAAAGCCAACGA 57.955 37.500 0.00 0.00 0.00 3.85
2278 2464 6.737254 TTCTCCTATAAAGAAAAGCCAACG 57.263 37.500 0.00 0.00 30.00 4.10
2279 2465 8.112016 AGTTTCTCCTATAAAGAAAAGCCAAC 57.888 34.615 10.15 1.39 42.63 3.77
2280 2466 7.393515 GGAGTTTCTCCTATAAAGAAAAGCCAA 59.606 37.037 8.38 0.00 46.41 4.52
2281 2467 6.884836 GGAGTTTCTCCTATAAAGAAAAGCCA 59.115 38.462 8.38 0.00 46.41 4.75
2282 2468 7.323049 GGAGTTTCTCCTATAAAGAAAAGCC 57.677 40.000 8.38 10.42 46.41 4.35
2296 2482 1.066858 TGATGCTCACGGAGTTTCTCC 60.067 52.381 5.79 5.79 46.44 3.71
2297 2483 1.996191 GTGATGCTCACGGAGTTTCTC 59.004 52.381 1.40 0.00 41.61 2.87
2298 2484 2.086054 GTGATGCTCACGGAGTTTCT 57.914 50.000 1.40 0.00 41.61 2.52
2307 2493 3.545481 CGGACGCGTGATGCTCAC 61.545 66.667 20.70 0.00 43.65 3.51
2308 2494 4.050934 ACGGACGCGTGATGCTCA 62.051 61.111 20.70 0.00 43.27 4.26
2309 2495 3.545481 CACGGACGCGTGATGCTC 61.545 66.667 20.70 0.00 43.27 4.26
2324 2510 2.027625 CGAGTTTGAGTCCCGGCAC 61.028 63.158 0.00 0.00 0.00 5.01
2325 2511 2.342279 CGAGTTTGAGTCCCGGCA 59.658 61.111 0.00 0.00 0.00 5.69
2326 2512 2.434359 CCGAGTTTGAGTCCCGGC 60.434 66.667 0.00 0.00 33.47 6.13
2327 2513 0.949105 CAACCGAGTTTGAGTCCCGG 60.949 60.000 0.00 0.00 45.09 5.73
2328 2514 0.949105 CCAACCGAGTTTGAGTCCCG 60.949 60.000 0.00 0.00 0.00 5.14
2329 2515 0.395312 TCCAACCGAGTTTGAGTCCC 59.605 55.000 0.00 0.00 0.00 4.46
2330 2516 1.070289 AGTCCAACCGAGTTTGAGTCC 59.930 52.381 0.00 0.00 0.00 3.85
2331 2517 2.135933 CAGTCCAACCGAGTTTGAGTC 58.864 52.381 0.00 0.00 0.00 3.36
2332 2518 1.202651 CCAGTCCAACCGAGTTTGAGT 60.203 52.381 0.00 0.00 0.00 3.41
2333 2519 1.512926 CCAGTCCAACCGAGTTTGAG 58.487 55.000 0.00 0.00 0.00 3.02
2334 2520 0.534203 GCCAGTCCAACCGAGTTTGA 60.534 55.000 0.00 0.00 0.00 2.69
2335 2521 0.817634 TGCCAGTCCAACCGAGTTTG 60.818 55.000 0.00 0.00 0.00 2.93
2336 2522 0.106918 TTGCCAGTCCAACCGAGTTT 60.107 50.000 0.00 0.00 0.00 2.66
2337 2523 0.818040 GTTGCCAGTCCAACCGAGTT 60.818 55.000 0.00 0.00 39.27 3.01
2338 2524 1.227853 GTTGCCAGTCCAACCGAGT 60.228 57.895 0.00 0.00 39.27 4.18
2339 2525 0.817634 TTGTTGCCAGTCCAACCGAG 60.818 55.000 2.97 0.00 43.36 4.63
2340 2526 1.098712 GTTGTTGCCAGTCCAACCGA 61.099 55.000 2.97 0.00 43.36 4.69
2341 2527 1.358759 GTTGTTGCCAGTCCAACCG 59.641 57.895 2.97 0.00 43.36 4.44
2343 2529 1.111277 AAGGTTGTTGCCAGTCCAAC 58.889 50.000 0.00 0.00 44.07 3.77
2344 2530 2.582052 CTAAGGTTGTTGCCAGTCCAA 58.418 47.619 0.00 0.00 0.00 3.53
2345 2531 1.817740 GCTAAGGTTGTTGCCAGTCCA 60.818 52.381 0.00 0.00 0.00 4.02
2346 2532 0.881796 GCTAAGGTTGTTGCCAGTCC 59.118 55.000 0.00 0.00 0.00 3.85
2347 2533 1.897560 AGCTAAGGTTGTTGCCAGTC 58.102 50.000 0.00 0.00 0.00 3.51
2348 2534 2.552373 GGTAGCTAAGGTTGTTGCCAGT 60.552 50.000 0.00 0.00 0.00 4.00
2349 2535 2.084546 GGTAGCTAAGGTTGTTGCCAG 58.915 52.381 0.00 0.00 0.00 4.85
2350 2536 1.271707 GGGTAGCTAAGGTTGTTGCCA 60.272 52.381 0.00 0.00 0.00 4.92
2351 2537 1.271707 TGGGTAGCTAAGGTTGTTGCC 60.272 52.381 0.00 0.00 0.00 4.52
2352 2538 2.194201 TGGGTAGCTAAGGTTGTTGC 57.806 50.000 0.00 0.00 0.00 4.17
2353 2539 2.817844 GGTTGGGTAGCTAAGGTTGTTG 59.182 50.000 0.00 0.00 0.00 3.33
2354 2540 2.444010 TGGTTGGGTAGCTAAGGTTGTT 59.556 45.455 0.00 0.00 0.00 2.83
2355 2541 2.039879 CTGGTTGGGTAGCTAAGGTTGT 59.960 50.000 0.00 0.00 0.00 3.32
2356 2542 2.711542 CTGGTTGGGTAGCTAAGGTTG 58.288 52.381 0.00 0.00 0.00 3.77
2357 2543 1.004394 GCTGGTTGGGTAGCTAAGGTT 59.996 52.381 0.00 0.00 36.99 3.50
2358 2544 0.618981 GCTGGTTGGGTAGCTAAGGT 59.381 55.000 0.00 0.00 36.99 3.50
2359 2545 3.478540 GCTGGTTGGGTAGCTAAGG 57.521 57.895 0.00 0.00 36.99 2.69
2364 2550 1.448013 GTCGAGCTGGTTGGGTAGC 60.448 63.158 0.00 0.00 40.18 3.58
2365 2551 1.153823 CGTCGAGCTGGTTGGGTAG 60.154 63.158 0.00 0.00 0.00 3.18
2366 2552 2.967397 CGTCGAGCTGGTTGGGTA 59.033 61.111 0.00 0.00 0.00 3.69
2367 2553 4.681978 GCGTCGAGCTGGTTGGGT 62.682 66.667 0.00 0.00 44.04 4.51
2383 2569 3.901797 CTGTGTTGGAGGACGGGGC 62.902 68.421 0.00 0.00 0.00 5.80
2384 2570 2.347490 CTGTGTTGGAGGACGGGG 59.653 66.667 0.00 0.00 0.00 5.73
2385 2571 1.764571 TTCCTGTGTTGGAGGACGGG 61.765 60.000 0.00 0.00 39.44 5.28
2386 2572 0.320771 CTTCCTGTGTTGGAGGACGG 60.321 60.000 0.00 0.00 39.44 4.79
2387 2573 0.393077 ACTTCCTGTGTTGGAGGACG 59.607 55.000 0.00 0.00 39.44 4.79
2388 2574 2.028020 CCTACTTCCTGTGTTGGAGGAC 60.028 54.545 0.00 0.00 39.44 3.85
2389 2575 2.158219 TCCTACTTCCTGTGTTGGAGGA 60.158 50.000 0.00 0.00 37.87 3.71
2390 2576 2.234908 CTCCTACTTCCTGTGTTGGAGG 59.765 54.545 13.70 0.00 46.27 4.30
2391 2577 3.601443 CTCCTACTTCCTGTGTTGGAG 57.399 52.381 9.21 9.21 45.46 3.86
2392 2578 2.632996 CACTCCTACTTCCTGTGTTGGA 59.367 50.000 0.00 0.00 37.09 3.53
2393 2579 2.368875 ACACTCCTACTTCCTGTGTTGG 59.631 50.000 0.00 0.00 38.51 3.77
2394 2580 3.393800 CACACTCCTACTTCCTGTGTTG 58.606 50.000 0.00 0.00 39.46 3.33
2395 2581 2.224305 GCACACTCCTACTTCCTGTGTT 60.224 50.000 0.00 0.00 39.46 3.32
2396 2582 1.344763 GCACACTCCTACTTCCTGTGT 59.655 52.381 0.00 0.00 41.75 3.72
2397 2583 1.344438 TGCACACTCCTACTTCCTGTG 59.656 52.381 0.00 0.00 36.19 3.66
2398 2584 1.717032 TGCACACTCCTACTTCCTGT 58.283 50.000 0.00 0.00 0.00 4.00
2399 2585 2.693069 CTTGCACACTCCTACTTCCTG 58.307 52.381 0.00 0.00 0.00 3.86
2400 2586 1.002544 GCTTGCACACTCCTACTTCCT 59.997 52.381 0.00 0.00 0.00 3.36
2409 2595 1.023513 CAGGCCTAGCTTGCACACTC 61.024 60.000 3.98 0.00 0.00 3.51
2430 2616 3.198417 TCCTATCGTATCCATGCATGCAT 59.802 43.478 27.46 27.46 37.08 3.96
2621 4342 2.537625 GCTAGCTTCAGCAATGAGTACG 59.462 50.000 7.70 0.00 45.16 3.67
2702 4423 1.590238 CGTCGAATCAACCATCTGAGC 59.410 52.381 0.00 0.00 0.00 4.26
2715 4436 1.635844 TTTGCGCTATGACGTCGAAT 58.364 45.000 9.73 2.10 34.88 3.34
2717 4438 0.989164 CTTTTGCGCTATGACGTCGA 59.011 50.000 9.73 0.00 34.88 4.20
2726 4447 3.803231 TCGTAACAAACTCTTTTGCGCTA 59.197 39.130 9.73 0.00 45.32 4.26
2759 4480 5.836821 AGAAGACTTTTCAAAAGGTGGAC 57.163 39.130 14.47 2.33 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.