Multiple sequence alignment - TraesCS7A01G131600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G131600 chr7A 100.000 4750 0 0 1 4750 85029845 85034594 0.000000e+00 8772.0
1 TraesCS7A01G131600 chr7A 84.625 1665 149 51 891 2534 84854542 84856120 0.000000e+00 1557.0
2 TraesCS7A01G131600 chr7A 94.577 627 27 4 19 638 6241174 6241800 0.000000e+00 963.0
3 TraesCS7A01G131600 chr7A 94.427 628 26 6 19 638 6171525 6172151 0.000000e+00 957.0
4 TraesCS7A01G131600 chr7A 91.615 644 52 2 1349 1991 217202984 217203626 0.000000e+00 889.0
5 TraesCS7A01G131600 chr7A 89.354 263 25 2 2276 2535 217203926 217204188 1.270000e-85 327.0
6 TraesCS7A01G131600 chr7A 89.231 260 19 4 995 1245 217202620 217202879 2.760000e-82 316.0
7 TraesCS7A01G131600 chr7A 89.130 138 11 2 2927 3064 84856431 84856564 8.180000e-38 169.0
8 TraesCS7A01G131600 chr7A 93.939 99 6 0 2933 3031 674273532 674273434 2.960000e-32 150.0
9 TraesCS7A01G131600 chr7D 92.800 3125 99 52 895 3980 83063094 83066131 0.000000e+00 4409.0
10 TraesCS7A01G131600 chr7D 87.718 1091 79 22 891 1981 82898913 82899948 0.000000e+00 1221.0
11 TraesCS7A01G131600 chr7D 84.228 1211 135 36 1348 2535 205132071 205133248 0.000000e+00 1127.0
12 TraesCS7A01G131600 chr7D 90.634 662 24 12 4124 4750 83080141 83080799 0.000000e+00 845.0
13 TraesCS7A01G131600 chr7D 93.208 265 18 0 2271 2535 82902007 82902271 1.600000e-104 390.0
14 TraesCS7A01G131600 chr7D 87.021 339 18 11 2812 3149 83084480 83084793 4.520000e-95 359.0
15 TraesCS7A01G131600 chr7D 88.077 260 22 4 995 1245 205131700 205131959 2.780000e-77 300.0
16 TraesCS7A01G131600 chr7D 93.069 101 7 0 3976 4076 126648571 126648471 1.070000e-31 148.0
17 TraesCS7A01G131600 chr7D 100.000 28 0 0 4074 4101 620242844 620242871 9.000000e-03 52.8
18 TraesCS7A01G131600 chr7B 91.536 1914 68 33 638 2532 32407951 32409789 0.000000e+00 2551.0
19 TraesCS7A01G131600 chr7B 88.443 1021 81 20 961 1981 32330455 32331438 0.000000e+00 1197.0
20 TraesCS7A01G131600 chr7B 93.641 629 33 4 20 641 649444390 649443762 0.000000e+00 933.0
21 TraesCS7A01G131600 chr7B 92.587 634 47 0 1348 1981 169433377 169434010 0.000000e+00 911.0
22 TraesCS7A01G131600 chr7B 91.403 663 54 2 1324 1985 32344774 32345434 0.000000e+00 905.0
23 TraesCS7A01G131600 chr7B 85.910 731 53 16 3260 3958 32410910 32411622 0.000000e+00 734.0
24 TraesCS7A01G131600 chr7B 83.077 780 68 28 2032 2811 32331540 32332255 0.000000e+00 651.0
25 TraesCS7A01G131600 chr7B 89.384 292 18 3 2914 3205 32410616 32410894 5.850000e-94 355.0
26 TraesCS7A01G131600 chr7B 89.328 253 27 0 2283 2535 169434301 169434553 7.670000e-83 318.0
27 TraesCS7A01G131600 chr7B 90.323 217 21 0 1029 1245 169433051 169433267 7.780000e-73 285.0
28 TraesCS7A01G131600 chr7B 85.659 258 15 11 3260 3497 32462512 32462767 7.890000e-63 252.0
29 TraesCS7A01G131600 chr7B 90.968 155 10 4 2668 2821 32410340 32410491 6.230000e-49 206.0
30 TraesCS7A01G131600 chr7B 94.444 126 4 1 3076 3201 32462368 32462490 1.740000e-44 191.0
31 TraesCS7A01G131600 chr7B 89.781 137 10 2 2928 3064 32332426 32332558 6.320000e-39 172.0
32 TraesCS7A01G131600 chr7B 85.987 157 11 6 3359 3504 32333506 32333662 1.770000e-34 158.0
33 TraesCS7A01G131600 chr7B 93.878 98 6 0 3978 4075 134634218 134634121 1.070000e-31 148.0
34 TraesCS7A01G131600 chr7B 93.814 97 6 0 3979 4075 745161010 745161106 3.830000e-31 147.0
35 TraesCS7A01G131600 chr7B 89.796 98 10 0 3359 3456 169435953 169436050 4.990000e-25 126.0
36 TraesCS7A01G131600 chr7B 95.349 43 0 2 2541 2582 32410265 32410306 3.070000e-07 67.6
37 TraesCS7A01G131600 chr7B 94.444 36 0 2 4074 4109 32329443 32329410 2.000000e-03 54.7
38 TraesCS7A01G131600 chr2B 86.368 961 112 17 1029 1985 792124674 792123729 0.000000e+00 1031.0
39 TraesCS7A01G131600 chr2B 81.387 548 66 16 2274 2821 792123446 792122935 9.510000e-112 414.0
40 TraesCS7A01G131600 chr2B 100.000 28 0 0 4074 4101 558109061 558109088 9.000000e-03 52.8
41 TraesCS7A01G131600 chr3D 95.847 626 19 4 20 638 95449700 95450325 0.000000e+00 1005.0
42 TraesCS7A01G131600 chr3D 94.845 97 5 0 3979 4075 135381115 135381019 8.230000e-33 152.0
43 TraesCS7A01G131600 chr3A 94.560 625 26 7 20 637 13156934 13156311 0.000000e+00 959.0
44 TraesCS7A01G131600 chrUn 94.258 627 29 4 19 638 277522822 277522196 0.000000e+00 952.0
45 TraesCS7A01G131600 chr6B 94.249 626 29 4 19 637 664720870 664720245 0.000000e+00 950.0
46 TraesCS7A01G131600 chr6B 97.143 35 0 1 4074 4108 442684833 442684800 1.850000e-04 58.4
47 TraesCS7A01G131600 chr6B 100.000 28 0 0 4074 4101 471126613 471126586 9.000000e-03 52.8
48 TraesCS7A01G131600 chr1A 94.212 622 29 4 27 642 567983248 567982628 0.000000e+00 942.0
49 TraesCS7A01G131600 chr6A 93.920 625 30 5 20 637 121928119 121928742 0.000000e+00 937.0
50 TraesCS7A01G131600 chr6A 90.265 113 10 1 3979 4091 315625362 315625251 3.830000e-31 147.0
51 TraesCS7A01G131600 chr5D 77.681 690 79 40 4074 4745 558873200 558872568 7.560000e-93 351.0
52 TraesCS7A01G131600 chr5D 88.333 120 12 2 3956 4075 228446941 228447058 4.960000e-30 143.0
53 TraesCS7A01G131600 chr3B 79.167 264 37 14 4077 4336 467970511 467970262 2.940000e-37 167.0
54 TraesCS7A01G131600 chr3B 93.069 101 7 0 3979 4079 472326291 472326191 1.070000e-31 148.0
55 TraesCS7A01G131600 chr3B 97.143 35 0 1 4074 4108 787483695 787483662 1.850000e-04 58.4
56 TraesCS7A01G131600 chr3B 100.000 28 0 0 4074 4101 752168065 752168038 9.000000e-03 52.8
57 TraesCS7A01G131600 chr4B 93.939 99 6 0 3979 4077 344920769 344920867 2.960000e-32 150.0
58 TraesCS7A01G131600 chr1D 93.814 97 6 0 3979 4075 315816907 315817003 3.830000e-31 147.0
59 TraesCS7A01G131600 chr2D 92.000 75 5 1 694 767 627328940 627329014 2.340000e-18 104.0
60 TraesCS7A01G131600 chr5A 100.000 28 0 0 4074 4101 622392170 622392197 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G131600 chr7A 85029845 85034594 4749 False 8772.000000 8772 100.000000 1 4750 1 chr7A.!!$F3 4749
1 TraesCS7A01G131600 chr7A 6241174 6241800 626 False 963.000000 963 94.577000 19 638 1 chr7A.!!$F2 619
2 TraesCS7A01G131600 chr7A 6171525 6172151 626 False 957.000000 957 94.427000 19 638 1 chr7A.!!$F1 619
3 TraesCS7A01G131600 chr7A 84854542 84856564 2022 False 863.000000 1557 86.877500 891 3064 2 chr7A.!!$F4 2173
4 TraesCS7A01G131600 chr7A 217202620 217204188 1568 False 510.666667 889 90.066667 995 2535 3 chr7A.!!$F5 1540
5 TraesCS7A01G131600 chr7D 83063094 83066131 3037 False 4409.000000 4409 92.800000 895 3980 1 chr7D.!!$F1 3085
6 TraesCS7A01G131600 chr7D 82898913 82902271 3358 False 805.500000 1221 90.463000 891 2535 2 chr7D.!!$F3 1644
7 TraesCS7A01G131600 chr7D 205131700 205133248 1548 False 713.500000 1127 86.152500 995 2535 2 chr7D.!!$F5 1540
8 TraesCS7A01G131600 chr7D 83080141 83084793 4652 False 602.000000 845 88.827500 2812 4750 2 chr7D.!!$F4 1938
9 TraesCS7A01G131600 chr7B 649443762 649444390 628 True 933.000000 933 93.641000 20 641 1 chr7B.!!$R3 621
10 TraesCS7A01G131600 chr7B 32344774 32345434 660 False 905.000000 905 91.403000 1324 1985 1 chr7B.!!$F1 661
11 TraesCS7A01G131600 chr7B 32407951 32411622 3671 False 782.720000 2551 90.629400 638 3958 5 chr7B.!!$F4 3320
12 TraesCS7A01G131600 chr7B 32330455 32333662 3207 False 544.500000 1197 86.822000 961 3504 4 chr7B.!!$F3 2543
13 TraesCS7A01G131600 chr7B 169433051 169436050 2999 False 410.000000 911 90.508500 1029 3456 4 chr7B.!!$F6 2427
14 TraesCS7A01G131600 chr2B 792122935 792124674 1739 True 722.500000 1031 83.877500 1029 2821 2 chr2B.!!$R1 1792
15 TraesCS7A01G131600 chr3D 95449700 95450325 625 False 1005.000000 1005 95.847000 20 638 1 chr3D.!!$F1 618
16 TraesCS7A01G131600 chr3A 13156311 13156934 623 True 959.000000 959 94.560000 20 637 1 chr3A.!!$R1 617
17 TraesCS7A01G131600 chrUn 277522196 277522822 626 True 952.000000 952 94.258000 19 638 1 chrUn.!!$R1 619
18 TraesCS7A01G131600 chr6B 664720245 664720870 625 True 950.000000 950 94.249000 19 637 1 chr6B.!!$R3 618
19 TraesCS7A01G131600 chr1A 567982628 567983248 620 True 942.000000 942 94.212000 27 642 1 chr1A.!!$R1 615
20 TraesCS7A01G131600 chr6A 121928119 121928742 623 False 937.000000 937 93.920000 20 637 1 chr6A.!!$F1 617
21 TraesCS7A01G131600 chr5D 558872568 558873200 632 True 351.000000 351 77.681000 4074 4745 1 chr5D.!!$R1 671

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
818 844 0.108804 GCGCTACACAAGGTCAGCTA 60.109 55.000 0.0 0.0 31.74 3.32 F
876 902 1.464608 CGTTTCGCCACATGTCAGAAT 59.535 47.619 0.0 0.0 0.00 2.40 F
2160 4171 2.160417 GGTCAGCTTCATTCAAACTCCG 59.840 50.000 0.0 0.0 0.00 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1738 1841 0.413832 AGAGGGAGAGGTTGTAGGCA 59.586 55.0 0.00 0.00 0.00 4.75 R
2213 4224 0.544697 AGTTGACGGTTGGTGAAGGT 59.455 50.0 0.00 0.00 0.00 3.50 R
3771 9278 0.392336 TTTGGCATGTTCAACCTGGC 59.608 50.0 11.82 11.82 39.18 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 108 9.719355 ATTTATGGTTTTTATGGTTTCTGGTTC 57.281 29.630 0.00 0.00 0.00 3.62
122 123 5.880164 TCTGGTTCCGATATGGTATGAAA 57.120 39.130 0.00 0.00 39.52 2.69
507 510 7.092137 TGATATATACCGAAACCATACCGAG 57.908 40.000 0.00 0.00 0.00 4.63
653 660 2.676839 GGTGACATCTGACAGCTTGATG 59.323 50.000 10.96 11.77 42.14 3.07
674 681 1.548719 TCACCTTATACTGTGCAGCGT 59.451 47.619 0.00 0.00 32.51 5.07
676 683 1.825474 ACCTTATACTGTGCAGCGTCT 59.175 47.619 0.00 0.00 0.00 4.18
678 685 2.159240 CCTTATACTGTGCAGCGTCTGA 60.159 50.000 10.46 0.00 32.44 3.27
683 690 1.546029 ACTGTGCAGCGTCTGATTCTA 59.454 47.619 10.46 0.00 32.44 2.10
684 691 2.191802 CTGTGCAGCGTCTGATTCTAG 58.808 52.381 10.46 0.00 32.44 2.43
688 695 2.223900 TGCAGCGTCTGATTCTAGGATG 60.224 50.000 10.46 0.00 32.44 3.51
701 708 3.696045 TCTAGGATGGCATCTAGCTCTC 58.304 50.000 25.48 8.33 44.79 3.20
710 717 2.029470 GCATCTAGCTCTCAGGCGTTAT 60.029 50.000 0.00 0.00 41.15 1.89
712 719 4.728534 CATCTAGCTCTCAGGCGTTATAC 58.271 47.826 0.00 0.00 37.29 1.47
715 722 2.379972 AGCTCTCAGGCGTTATACACT 58.620 47.619 0.00 0.00 37.29 3.55
729 736 7.241376 GCGTTATACACTGACTTAGCATTTTT 58.759 34.615 0.00 0.00 0.00 1.94
753 760 0.597377 CAATCCGGATGCGACGATGA 60.597 55.000 19.95 0.00 0.00 2.92
758 765 1.437573 GGATGCGACGATGACCAGA 59.562 57.895 0.00 0.00 0.00 3.86
768 775 1.140407 GATGACCAGACGTGTAGCGC 61.140 60.000 0.00 0.00 46.11 5.92
776 783 2.196382 GACGTGTAGCGCCTGTCAGA 62.196 60.000 2.29 0.00 46.11 3.27
788 795 3.580916 GTCAGAGAGACGACGCCT 58.419 61.111 0.00 0.00 37.53 5.52
790 797 1.085091 GTCAGAGAGACGACGCCTAA 58.915 55.000 0.00 0.00 37.53 2.69
792 799 1.088306 CAGAGAGACGACGCCTAACT 58.912 55.000 0.00 0.00 0.00 2.24
793 800 1.088306 AGAGAGACGACGCCTAACTG 58.912 55.000 0.00 0.00 0.00 3.16
794 801 0.803740 GAGAGACGACGCCTAACTGT 59.196 55.000 0.00 0.00 0.00 3.55
799 822 1.804326 CGACGCCTAACTGTTCGGG 60.804 63.158 12.40 9.92 0.00 5.14
818 844 0.108804 GCGCTACACAAGGTCAGCTA 60.109 55.000 0.00 0.00 31.74 3.32
834 860 5.082723 GTCAGCTAGATGAAACTTTTTCGC 58.917 41.667 13.19 0.00 0.00 4.70
835 861 4.084507 CAGCTAGATGAAACTTTTTCGCG 58.915 43.478 0.40 0.00 0.00 5.87
836 862 3.125316 AGCTAGATGAAACTTTTTCGCGG 59.875 43.478 6.13 0.00 0.00 6.46
840 866 2.748461 TGAAACTTTTTCGCGGACAG 57.252 45.000 6.13 0.00 0.00 3.51
876 902 1.464608 CGTTTCGCCACATGTCAGAAT 59.535 47.619 0.00 0.00 0.00 2.40
946 975 3.370061 ACTGTCGCGCTTTAAATTACTCC 59.630 43.478 5.56 0.00 0.00 3.85
947 976 3.592059 TGTCGCGCTTTAAATTACTCCT 58.408 40.909 5.56 0.00 0.00 3.69
948 977 3.615496 TGTCGCGCTTTAAATTACTCCTC 59.385 43.478 5.56 0.00 0.00 3.71
949 978 3.864003 GTCGCGCTTTAAATTACTCCTCT 59.136 43.478 5.56 0.00 0.00 3.69
950 979 4.329256 GTCGCGCTTTAAATTACTCCTCTT 59.671 41.667 5.56 0.00 0.00 2.85
1994 2166 5.418209 GGCGTCTGGTATACTCCACTATATT 59.582 44.000 2.25 0.00 33.55 1.28
1995 2167 6.600822 GGCGTCTGGTATACTCCACTATATTA 59.399 42.308 2.25 0.00 33.55 0.98
1996 2168 7.284944 GGCGTCTGGTATACTCCACTATATTAT 59.715 40.741 2.25 0.00 33.55 1.28
2156 4167 5.448360 GCTATCAGGTCAGCTTCATTCAAAC 60.448 44.000 0.00 0.00 34.86 2.93
2157 4168 4.090761 TCAGGTCAGCTTCATTCAAACT 57.909 40.909 0.00 0.00 0.00 2.66
2158 4169 4.067896 TCAGGTCAGCTTCATTCAAACTC 58.932 43.478 0.00 0.00 0.00 3.01
2159 4170 3.190118 CAGGTCAGCTTCATTCAAACTCC 59.810 47.826 0.00 0.00 0.00 3.85
2160 4171 2.160417 GGTCAGCTTCATTCAAACTCCG 59.840 50.000 0.00 0.00 0.00 4.63
2161 4172 2.808543 GTCAGCTTCATTCAAACTCCGT 59.191 45.455 0.00 0.00 0.00 4.69
2162 4173 2.807967 TCAGCTTCATTCAAACTCCGTG 59.192 45.455 0.00 0.00 0.00 4.94
2163 4174 2.549754 CAGCTTCATTCAAACTCCGTGT 59.450 45.455 0.00 0.00 0.00 4.49
2164 4175 3.745975 CAGCTTCATTCAAACTCCGTGTA 59.254 43.478 0.00 0.00 0.00 2.90
2169 4180 7.174253 AGCTTCATTCAAACTCCGTGTAATTAA 59.826 33.333 0.00 0.00 0.00 1.40
2170 4181 7.806014 GCTTCATTCAAACTCCGTGTAATTAAA 59.194 33.333 0.00 0.00 0.00 1.52
2171 4182 9.672086 CTTCATTCAAACTCCGTGTAATTAAAA 57.328 29.630 0.00 0.00 0.00 1.52
2212 4223 8.522830 TCTTGTTTTGTTCAAGAATTCTTCACT 58.477 29.630 17.91 0.00 45.14 3.41
2213 4224 9.787532 CTTGTTTTGTTCAAGAATTCTTCACTA 57.212 29.630 17.91 11.39 43.17 2.74
2214 4225 9.567848 TTGTTTTGTTCAAGAATTCTTCACTAC 57.432 29.630 17.91 12.90 33.11 2.73
2231 4247 2.140717 CTACCTTCACCAACCGTCAAC 58.859 52.381 0.00 0.00 0.00 3.18
2237 4253 4.096682 CCTTCACCAACCGTCAACTTTTAA 59.903 41.667 0.00 0.00 0.00 1.52
2238 4254 4.886247 TCACCAACCGTCAACTTTTAAG 57.114 40.909 0.00 0.00 0.00 1.85
2265 4284 3.746940 TCTAAACAAACTGCTACCACCC 58.253 45.455 0.00 0.00 0.00 4.61
2267 4286 1.687563 AACAAACTGCTACCACCCAC 58.312 50.000 0.00 0.00 0.00 4.61
2268 4287 0.534203 ACAAACTGCTACCACCCACG 60.534 55.000 0.00 0.00 0.00 4.94
2269 4288 1.072505 AAACTGCTACCACCCACGG 59.927 57.895 0.00 0.00 0.00 4.94
2292 4317 3.811497 ACCTACCTGTTTACGTTTTCAGC 59.189 43.478 0.00 0.00 0.00 4.26
2478 4503 2.956964 GCCGTCTCCAAGATCGCG 60.957 66.667 0.00 0.00 0.00 5.87
2605 5137 9.654663 TGCATGATGATTTTATTTTGTTCATGA 57.345 25.926 12.36 0.00 40.89 3.07
2629 5179 1.470890 CTCAACCTCGTCTCTGGAGTC 59.529 57.143 0.00 0.00 0.00 3.36
2630 5180 1.202891 TCAACCTCGTCTCTGGAGTCA 60.203 52.381 0.00 0.00 0.00 3.41
2631 5181 1.068194 CAACCTCGTCTCTGGAGTCAC 60.068 57.143 0.00 0.00 0.00 3.67
2632 5182 0.110678 ACCTCGTCTCTGGAGTCACA 59.889 55.000 0.00 0.00 0.00 3.58
2633 5183 0.808125 CCTCGTCTCTGGAGTCACAG 59.192 60.000 0.00 0.00 39.84 3.66
2634 5184 0.170116 CTCGTCTCTGGAGTCACAGC 59.830 60.000 0.00 0.00 38.36 4.40
2635 5185 0.537371 TCGTCTCTGGAGTCACAGCA 60.537 55.000 0.00 0.00 38.36 4.41
2636 5186 0.529833 CGTCTCTGGAGTCACAGCAT 59.470 55.000 0.00 0.00 38.36 3.79
2637 5187 1.735038 CGTCTCTGGAGTCACAGCATG 60.735 57.143 0.00 0.00 46.00 4.06
2638 5188 0.248565 TCTCTGGAGTCACAGCATGC 59.751 55.000 10.51 10.51 42.53 4.06
2639 5189 1.079612 TCTGGAGTCACAGCATGCG 60.080 57.895 13.01 9.99 42.53 4.73
2640 5190 1.375140 CTGGAGTCACAGCATGCGT 60.375 57.895 13.01 10.68 42.53 5.24
2641 5191 1.632948 CTGGAGTCACAGCATGCGTG 61.633 60.000 26.32 26.32 42.53 5.34
2642 5192 1.374631 GGAGTCACAGCATGCGTGA 60.375 57.895 28.96 28.96 42.53 4.35
2643 5193 0.742281 GGAGTCACAGCATGCGTGAT 60.742 55.000 32.39 24.62 44.70 3.06
2644 5194 0.372679 GAGTCACAGCATGCGTGATG 59.627 55.000 32.39 22.11 44.70 3.07
2645 5195 0.037046 AGTCACAGCATGCGTGATGA 60.037 50.000 32.39 22.75 44.34 2.92
2646 5196 1.012086 GTCACAGCATGCGTGATGAT 58.988 50.000 32.39 11.78 44.34 2.45
2647 5197 1.399440 GTCACAGCATGCGTGATGATT 59.601 47.619 32.39 6.31 44.34 2.57
2648 5198 2.086094 TCACAGCATGCGTGATGATTT 58.914 42.857 29.65 5.52 44.34 2.17
2649 5199 2.488937 TCACAGCATGCGTGATGATTTT 59.511 40.909 29.65 5.13 44.34 1.82
2650 5200 3.688673 TCACAGCATGCGTGATGATTTTA 59.311 39.130 29.65 13.49 44.34 1.52
2651 5201 4.336153 TCACAGCATGCGTGATGATTTTAT 59.664 37.500 29.65 3.95 44.34 1.40
2652 5202 5.038683 CACAGCATGCGTGATGATTTTATT 58.961 37.500 29.65 3.18 44.34 1.40
2653 5203 5.517411 CACAGCATGCGTGATGATTTTATTT 59.483 36.000 29.65 2.40 44.34 1.40
2654 5204 6.035220 CACAGCATGCGTGATGATTTTATTTT 59.965 34.615 29.65 1.63 44.34 1.82
2655 5205 6.035220 ACAGCATGCGTGATGATTTTATTTTG 59.965 34.615 29.65 7.02 44.34 2.44
2656 5206 6.035220 CAGCATGCGTGATGATTTTATTTTGT 59.965 34.615 19.33 0.00 44.34 2.83
2657 5207 6.591062 AGCATGCGTGATGATTTTATTTTGTT 59.409 30.769 13.01 0.00 33.31 2.83
2658 5208 6.896088 GCATGCGTGATGATTTTATTTTGTTC 59.104 34.615 10.93 0.00 33.31 3.18
2659 5209 7.411696 GCATGCGTGATGATTTTATTTTGTTCA 60.412 33.333 10.93 0.00 33.31 3.18
2660 5210 7.332003 TGCGTGATGATTTTATTTTGTTCAC 57.668 32.000 0.00 0.00 0.00 3.18
2770 5339 2.190398 TGCCCTTGGGCTATCTTCTA 57.810 50.000 28.37 5.66 35.66 2.10
2794 5363 4.631813 GGCTACAAGTTCAACTATGGAGTG 59.368 45.833 11.41 0.00 35.52 3.51
2811 5380 6.256643 TGGAGTGGGGGTAATTCTTTATAC 57.743 41.667 0.00 0.00 0.00 1.47
2814 5383 6.715264 GGAGTGGGGGTAATTCTTTATACATG 59.285 42.308 0.00 0.00 0.00 3.21
2833 7528 6.764308 ACATGTTATTTCATTGGAGAGTGG 57.236 37.500 0.00 0.00 0.00 4.00
2834 7529 5.126061 ACATGTTATTTCATTGGAGAGTGGC 59.874 40.000 0.00 0.00 0.00 5.01
2835 7530 4.661222 TGTTATTTCATTGGAGAGTGGCA 58.339 39.130 0.00 0.00 0.00 4.92
2836 7531 4.458989 TGTTATTTCATTGGAGAGTGGCAC 59.541 41.667 10.29 10.29 0.00 5.01
2837 7532 2.957402 TTTCATTGGAGAGTGGCACT 57.043 45.000 22.26 22.26 0.00 4.40
2838 7533 4.574674 ATTTCATTGGAGAGTGGCACTA 57.425 40.909 22.11 4.56 0.00 2.74
2839 7534 3.334583 TTCATTGGAGAGTGGCACTAC 57.665 47.619 22.11 16.97 0.00 2.73
2840 7535 2.540383 TCATTGGAGAGTGGCACTACT 58.460 47.619 22.11 18.50 0.00 2.57
2841 7536 2.906389 TCATTGGAGAGTGGCACTACTT 59.094 45.455 22.11 9.38 0.00 2.24
2842 7537 3.327757 TCATTGGAGAGTGGCACTACTTT 59.672 43.478 22.11 6.63 0.00 2.66
2843 7538 3.402628 TTGGAGAGTGGCACTACTTTC 57.597 47.619 22.11 14.99 32.63 2.62
2844 7539 1.623811 TGGAGAGTGGCACTACTTTCC 59.376 52.381 22.11 22.57 46.69 3.13
2845 7540 1.066071 GGAGAGTGGCACTACTTTCCC 60.066 57.143 22.11 12.50 42.93 3.97
2846 7541 1.903183 GAGAGTGGCACTACTTTCCCT 59.097 52.381 22.11 11.42 0.00 4.20
2847 7542 3.097614 GAGAGTGGCACTACTTTCCCTA 58.902 50.000 22.11 0.00 0.00 3.53
2848 7543 3.707102 GAGAGTGGCACTACTTTCCCTAT 59.293 47.826 22.11 0.00 0.00 2.57
2849 7544 4.104831 AGAGTGGCACTACTTTCCCTATT 58.895 43.478 22.11 0.00 0.00 1.73
2850 7545 4.536489 AGAGTGGCACTACTTTCCCTATTT 59.464 41.667 22.11 0.00 0.00 1.40
2851 7546 4.589908 AGTGGCACTACTTTCCCTATTTG 58.410 43.478 20.61 0.00 0.00 2.32
2852 7547 4.288626 AGTGGCACTACTTTCCCTATTTGA 59.711 41.667 20.61 0.00 0.00 2.69
2853 7548 5.044846 AGTGGCACTACTTTCCCTATTTGAT 60.045 40.000 20.61 0.00 0.00 2.57
2854 7549 5.297029 GTGGCACTACTTTCCCTATTTGATC 59.703 44.000 11.13 0.00 0.00 2.92
2922 7673 9.449719 AGAACATTTACGGTCTCTATGATTTTT 57.550 29.630 0.00 0.00 0.00 1.94
3030 7813 5.894298 ACAGATTGGAATGCAGAGGTATA 57.106 39.130 0.00 0.00 0.00 1.47
3031 7814 6.445451 ACAGATTGGAATGCAGAGGTATAT 57.555 37.500 0.00 0.00 0.00 0.86
3032 7815 7.559335 ACAGATTGGAATGCAGAGGTATATA 57.441 36.000 0.00 0.00 0.00 0.86
3033 7816 8.155620 ACAGATTGGAATGCAGAGGTATATAT 57.844 34.615 0.00 0.00 0.00 0.86
3071 7854 2.761208 TCCGGTTTTCACCATGTGTTTT 59.239 40.909 0.00 0.00 44.53 2.43
3072 7855 2.863137 CCGGTTTTCACCATGTGTTTTG 59.137 45.455 0.00 0.00 44.53 2.44
3074 7857 3.305629 CGGTTTTCACCATGTGTTTTGTG 59.694 43.478 0.00 0.00 44.53 3.33
3076 7859 4.092675 GGTTTTCACCATGTGTTTTGTGTG 59.907 41.667 0.00 0.00 43.61 3.82
3234 8069 8.415950 ACACATGTCATAAAACCTTTCCAATA 57.584 30.769 0.00 0.00 0.00 1.90
3235 8070 8.865090 ACACATGTCATAAAACCTTTCCAATAA 58.135 29.630 0.00 0.00 0.00 1.40
3236 8071 9.874205 CACATGTCATAAAACCTTTCCAATAAT 57.126 29.630 0.00 0.00 0.00 1.28
3429 8907 2.678190 CGATGGAACCAAACCTCTCCTC 60.678 54.545 0.00 0.00 0.00 3.71
3554 9061 2.509964 AGATTAGGGGCCGTGATTTCTT 59.490 45.455 9.43 0.00 0.00 2.52
3641 9148 6.683974 ATATGTTGGCACATAAGTCAGTTC 57.316 37.500 11.81 0.00 46.76 3.01
3714 9221 5.266733 TGTATTCGGGGTGAAGTATGTAC 57.733 43.478 0.00 0.00 40.65 2.90
3803 9310 7.138081 TGAACATGCCAAATTACTTATATGCG 58.862 34.615 0.00 0.00 0.00 4.73
3911 9420 7.864379 TCTGAAAAGAAAATCATCAGCTTTGTC 59.136 33.333 0.00 0.00 37.89 3.18
3924 9451 1.938016 GCTTTGTCGACATGGTACCGT 60.938 52.381 20.80 3.49 0.00 4.83
3980 9507 5.799827 AGGAATGCCTAGAACTCATCTAC 57.200 43.478 0.00 0.00 44.74 2.59
3981 9508 5.463154 AGGAATGCCTAGAACTCATCTACT 58.537 41.667 0.00 0.00 44.74 2.57
3982 9509 5.538433 AGGAATGCCTAGAACTCATCTACTC 59.462 44.000 0.00 0.00 44.74 2.59
3983 9510 5.279256 GGAATGCCTAGAACTCATCTACTCC 60.279 48.000 0.00 0.00 39.71 3.85
3984 9511 3.567397 TGCCTAGAACTCATCTACTCCC 58.433 50.000 0.00 0.00 39.71 4.30
3985 9512 3.205507 TGCCTAGAACTCATCTACTCCCT 59.794 47.826 0.00 0.00 39.71 4.20
3986 9513 3.824443 GCCTAGAACTCATCTACTCCCTC 59.176 52.174 0.00 0.00 39.71 4.30
3987 9514 4.447180 GCCTAGAACTCATCTACTCCCTCT 60.447 50.000 0.00 0.00 39.71 3.69
3988 9515 5.070001 CCTAGAACTCATCTACTCCCTCTG 58.930 50.000 0.00 0.00 39.71 3.35
3989 9516 4.601406 AGAACTCATCTACTCCCTCTGT 57.399 45.455 0.00 0.00 36.32 3.41
3990 9517 4.532834 AGAACTCATCTACTCCCTCTGTC 58.467 47.826 0.00 0.00 36.32 3.51
3991 9518 3.306472 ACTCATCTACTCCCTCTGTCC 57.694 52.381 0.00 0.00 0.00 4.02
3992 9519 2.091555 ACTCATCTACTCCCTCTGTCCC 60.092 54.545 0.00 0.00 0.00 4.46
3993 9520 1.930204 TCATCTACTCCCTCTGTCCCA 59.070 52.381 0.00 0.00 0.00 4.37
3994 9521 2.314852 TCATCTACTCCCTCTGTCCCAA 59.685 50.000 0.00 0.00 0.00 4.12
3995 9522 3.107601 CATCTACTCCCTCTGTCCCAAA 58.892 50.000 0.00 0.00 0.00 3.28
3996 9523 3.269592 TCTACTCCCTCTGTCCCAAAA 57.730 47.619 0.00 0.00 0.00 2.44
3997 9524 3.803340 TCTACTCCCTCTGTCCCAAAAT 58.197 45.455 0.00 0.00 0.00 1.82
3998 9525 4.955335 TCTACTCCCTCTGTCCCAAAATA 58.045 43.478 0.00 0.00 0.00 1.40
3999 9526 5.347124 TCTACTCCCTCTGTCCCAAAATAA 58.653 41.667 0.00 0.00 0.00 1.40
4000 9527 4.576330 ACTCCCTCTGTCCCAAAATAAG 57.424 45.455 0.00 0.00 0.00 1.73
4001 9528 3.916989 ACTCCCTCTGTCCCAAAATAAGT 59.083 43.478 0.00 0.00 0.00 2.24
4002 9529 4.263506 ACTCCCTCTGTCCCAAAATAAGTG 60.264 45.833 0.00 0.00 0.00 3.16
4003 9530 3.655777 TCCCTCTGTCCCAAAATAAGTGT 59.344 43.478 0.00 0.00 0.00 3.55
4004 9531 4.010349 CCCTCTGTCCCAAAATAAGTGTC 58.990 47.826 0.00 0.00 0.00 3.67
4005 9532 4.263506 CCCTCTGTCCCAAAATAAGTGTCT 60.264 45.833 0.00 0.00 0.00 3.41
4006 9533 5.316987 CCTCTGTCCCAAAATAAGTGTCTT 58.683 41.667 0.00 0.00 0.00 3.01
4007 9534 5.182001 CCTCTGTCCCAAAATAAGTGTCTTG 59.818 44.000 0.00 0.00 0.00 3.02
4008 9535 5.935945 TCTGTCCCAAAATAAGTGTCTTGA 58.064 37.500 0.00 0.00 0.00 3.02
4009 9536 6.542821 TCTGTCCCAAAATAAGTGTCTTGAT 58.457 36.000 0.00 0.00 0.00 2.57
4010 9537 6.655003 TCTGTCCCAAAATAAGTGTCTTGATC 59.345 38.462 0.00 0.00 0.00 2.92
4011 9538 6.542821 TGTCCCAAAATAAGTGTCTTGATCT 58.457 36.000 0.00 0.00 0.00 2.75
4012 9539 7.004086 TGTCCCAAAATAAGTGTCTTGATCTT 58.996 34.615 0.00 0.00 0.00 2.40
4013 9540 8.160765 TGTCCCAAAATAAGTGTCTTGATCTTA 58.839 33.333 0.00 0.00 0.00 2.10
4014 9541 8.669243 GTCCCAAAATAAGTGTCTTGATCTTAG 58.331 37.037 0.00 0.00 0.00 2.18
4015 9542 8.383175 TCCCAAAATAAGTGTCTTGATCTTAGT 58.617 33.333 0.00 0.00 0.00 2.24
4016 9543 9.667107 CCCAAAATAAGTGTCTTGATCTTAGTA 57.333 33.333 0.00 0.00 0.00 1.82
4049 9576 8.461249 ACACTAGAGTTAGTACAAAGTTGAGA 57.539 34.615 0.00 0.00 38.05 3.27
4050 9577 8.351461 ACACTAGAGTTAGTACAAAGTTGAGAC 58.649 37.037 0.00 0.00 38.05 3.36
4051 9578 8.350722 CACTAGAGTTAGTACAAAGTTGAGACA 58.649 37.037 0.00 0.00 38.05 3.41
4052 9579 8.351461 ACTAGAGTTAGTACAAAGTTGAGACAC 58.649 37.037 0.00 0.00 38.35 3.67
4053 9580 7.349412 AGAGTTAGTACAAAGTTGAGACACT 57.651 36.000 0.00 0.00 0.00 3.55
4054 9581 7.783042 AGAGTTAGTACAAAGTTGAGACACTT 58.217 34.615 0.00 0.00 38.74 3.16
4055 9582 8.910944 AGAGTTAGTACAAAGTTGAGACACTTA 58.089 33.333 0.00 0.00 35.87 2.24
4056 9583 9.694137 GAGTTAGTACAAAGTTGAGACACTTAT 57.306 33.333 0.00 0.00 35.87 1.73
4063 9590 8.974060 ACAAAGTTGAGACACTTATTTTAGGA 57.026 30.769 0.00 0.00 35.87 2.94
4064 9591 8.837389 ACAAAGTTGAGACACTTATTTTAGGAC 58.163 33.333 0.00 0.00 35.87 3.85
4065 9592 7.653767 AAGTTGAGACACTTATTTTAGGACG 57.346 36.000 0.00 0.00 35.10 4.79
4066 9593 6.164176 AGTTGAGACACTTATTTTAGGACGG 58.836 40.000 0.00 0.00 0.00 4.79
4067 9594 5.988310 TGAGACACTTATTTTAGGACGGA 57.012 39.130 0.00 0.00 0.00 4.69
4068 9595 5.962433 TGAGACACTTATTTTAGGACGGAG 58.038 41.667 0.00 0.00 0.00 4.63
4069 9596 5.105473 TGAGACACTTATTTTAGGACGGAGG 60.105 44.000 0.00 0.00 0.00 4.30
4070 9597 4.161754 AGACACTTATTTTAGGACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
4071 9598 4.098894 ACACTTATTTTAGGACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
4072 9599 4.161754 ACACTTATTTTAGGACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
4086 9613 5.747342 ACGGAGGGAGTAGATGAGATATAC 58.253 45.833 0.00 0.00 0.00 1.47
4104 9631 9.638239 GAGATATACTTTGGTCTCATTCATCTC 57.362 37.037 0.00 0.00 37.60 2.75
4109 9636 7.830099 ACTTTGGTCTCATTCATCTCTTTTT 57.170 32.000 0.00 0.00 0.00 1.94
4110 9637 7.880105 ACTTTGGTCTCATTCATCTCTTTTTC 58.120 34.615 0.00 0.00 0.00 2.29
4111 9638 7.723172 ACTTTGGTCTCATTCATCTCTTTTTCT 59.277 33.333 0.00 0.00 0.00 2.52
4113 9640 8.469309 TTGGTCTCATTCATCTCTTTTTCTTT 57.531 30.769 0.00 0.00 0.00 2.52
4114 9641 8.469309 TGGTCTCATTCATCTCTTTTTCTTTT 57.531 30.769 0.00 0.00 0.00 2.27
4115 9642 8.917088 TGGTCTCATTCATCTCTTTTTCTTTTT 58.083 29.630 0.00 0.00 0.00 1.94
4172 9700 2.466846 CTGTGCTGCCTTTTCTTGTTG 58.533 47.619 0.00 0.00 0.00 3.33
4173 9701 1.824230 TGTGCTGCCTTTTCTTGTTGT 59.176 42.857 0.00 0.00 0.00 3.32
4174 9702 2.233431 TGTGCTGCCTTTTCTTGTTGTT 59.767 40.909 0.00 0.00 0.00 2.83
4184 9712 6.381801 CCTTTTCTTGTTGTTATGTAGGCTG 58.618 40.000 0.00 0.00 0.00 4.85
4185 9713 5.957842 TTTCTTGTTGTTATGTAGGCTGG 57.042 39.130 0.00 0.00 0.00 4.85
4205 9733 2.290705 GGGCCAGGCTTCTTTTGTACTA 60.291 50.000 12.43 0.00 0.00 1.82
4207 9735 2.415512 GCCAGGCTTCTTTTGTACTACG 59.584 50.000 3.29 0.00 0.00 3.51
4209 9737 3.678548 CCAGGCTTCTTTTGTACTACGTC 59.321 47.826 0.00 0.00 0.00 4.34
4224 9762 2.433318 GTCCTCGTCCACTGCTGC 60.433 66.667 0.00 0.00 0.00 5.25
4239 9777 3.111098 CTGCTGCTTGTGTCTTGTTTTC 58.889 45.455 0.00 0.00 0.00 2.29
4244 9782 5.120674 GCTGCTTGTGTCTTGTTTTCTTTTT 59.879 36.000 0.00 0.00 0.00 1.94
4245 9783 6.670689 GCTGCTTGTGTCTTGTTTTCTTTTTC 60.671 38.462 0.00 0.00 0.00 2.29
4246 9784 6.454795 TGCTTGTGTCTTGTTTTCTTTTTCT 58.545 32.000 0.00 0.00 0.00 2.52
4247 9785 6.928492 TGCTTGTGTCTTGTTTTCTTTTTCTT 59.072 30.769 0.00 0.00 0.00 2.52
4248 9786 7.440856 TGCTTGTGTCTTGTTTTCTTTTTCTTT 59.559 29.630 0.00 0.00 0.00 2.52
4249 9787 8.282592 GCTTGTGTCTTGTTTTCTTTTTCTTTT 58.717 29.630 0.00 0.00 0.00 2.27
4251 9789 9.928236 TTGTGTCTTGTTTTCTTTTTCTTTTTG 57.072 25.926 0.00 0.00 0.00 2.44
4252 9790 8.067189 TGTGTCTTGTTTTCTTTTTCTTTTTGC 58.933 29.630 0.00 0.00 0.00 3.68
4253 9791 8.282592 GTGTCTTGTTTTCTTTTTCTTTTTGCT 58.717 29.630 0.00 0.00 0.00 3.91
4254 9792 8.835439 TGTCTTGTTTTCTTTTTCTTTTTGCTT 58.165 25.926 0.00 0.00 0.00 3.91
4255 9793 9.663904 GTCTTGTTTTCTTTTTCTTTTTGCTTT 57.336 25.926 0.00 0.00 0.00 3.51
4273 9811 2.430546 TTTTACGTTTGCATGGCTGG 57.569 45.000 0.00 0.00 0.00 4.85
4311 9849 4.706842 AAAGGAAGGAAGTGCTTAGACA 57.293 40.909 0.00 0.00 0.00 3.41
4314 9852 3.067833 GGAAGGAAGTGCTTAGACACAC 58.932 50.000 8.85 0.00 43.23 3.82
4343 9881 7.379098 TCTACGCATGTCAAGTAGGATATAG 57.621 40.000 14.82 0.00 38.58 1.31
4344 9882 5.392767 ACGCATGTCAAGTAGGATATAGG 57.607 43.478 0.00 0.00 0.00 2.57
4345 9883 5.077564 ACGCATGTCAAGTAGGATATAGGA 58.922 41.667 0.00 0.00 0.00 2.94
4361 9899 6.315642 GGATATAGGATGCATCATGTTCACTG 59.684 42.308 27.25 0.00 0.00 3.66
4365 9903 0.524414 TGCATCATGTTCACTGCTGC 59.476 50.000 0.00 0.00 36.54 5.25
4366 9904 0.809385 GCATCATGTTCACTGCTGCT 59.191 50.000 0.00 0.00 33.97 4.24
4368 9906 2.863739 CATCATGTTCACTGCTGCTTG 58.136 47.619 0.00 0.00 0.00 4.01
4372 9910 2.849880 TGTTCACTGCTGCTTGTTTC 57.150 45.000 0.00 0.00 0.00 2.78
4375 9913 3.193267 TGTTCACTGCTGCTTGTTTCTTT 59.807 39.130 0.00 0.00 0.00 2.52
4377 9915 3.282021 TCACTGCTGCTTGTTTCTTTCT 58.718 40.909 0.00 0.00 0.00 2.52
4378 9916 3.696051 TCACTGCTGCTTGTTTCTTTCTT 59.304 39.130 0.00 0.00 0.00 2.52
4379 9917 4.040376 CACTGCTGCTTGTTTCTTTCTTC 58.960 43.478 0.00 0.00 0.00 2.87
4380 9918 3.950395 ACTGCTGCTTGTTTCTTTCTTCT 59.050 39.130 0.00 0.00 0.00 2.85
4381 9919 4.400567 ACTGCTGCTTGTTTCTTTCTTCTT 59.599 37.500 0.00 0.00 0.00 2.52
4382 9920 4.925068 TGCTGCTTGTTTCTTTCTTCTTC 58.075 39.130 0.00 0.00 0.00 2.87
4383 9921 4.641989 TGCTGCTTGTTTCTTTCTTCTTCT 59.358 37.500 0.00 0.00 0.00 2.85
4384 9922 5.126061 TGCTGCTTGTTTCTTTCTTCTTCTT 59.874 36.000 0.00 0.00 0.00 2.52
4385 9923 6.038985 GCTGCTTGTTTCTTTCTTCTTCTTT 58.961 36.000 0.00 0.00 0.00 2.52
4386 9924 6.533012 GCTGCTTGTTTCTTTCTTCTTCTTTT 59.467 34.615 0.00 0.00 0.00 2.27
4413 9951 5.300034 TGCATGGATCATGTCAATTTACTCC 59.700 40.000 9.28 0.00 43.10 3.85
4414 9952 5.278660 GCATGGATCATGTCAATTTACTCCC 60.279 44.000 9.28 0.00 43.10 4.30
4415 9953 4.450976 TGGATCATGTCAATTTACTCCCG 58.549 43.478 0.00 0.00 0.00 5.14
4416 9954 4.080582 TGGATCATGTCAATTTACTCCCGT 60.081 41.667 0.00 0.00 0.00 5.28
4417 9955 5.129650 TGGATCATGTCAATTTACTCCCGTA 59.870 40.000 0.00 0.00 0.00 4.02
4418 9956 5.696724 GGATCATGTCAATTTACTCCCGTAG 59.303 44.000 0.00 0.00 0.00 3.51
4435 9973 5.110940 CCGTAGGCTAGATAACAGTCTTC 57.889 47.826 0.00 0.00 46.14 2.87
4436 9974 4.822896 CCGTAGGCTAGATAACAGTCTTCT 59.177 45.833 0.00 0.00 46.14 2.85
4437 9975 5.299782 CCGTAGGCTAGATAACAGTCTTCTT 59.700 44.000 0.00 0.00 46.14 2.52
4438 9976 6.432107 CGTAGGCTAGATAACAGTCTTCTTC 58.568 44.000 0.00 0.00 0.00 2.87
4439 9977 6.038382 CGTAGGCTAGATAACAGTCTTCTTCA 59.962 42.308 0.00 0.00 0.00 3.02
4440 9978 6.215495 AGGCTAGATAACAGTCTTCTTCAC 57.785 41.667 0.00 0.00 0.00 3.18
4441 9979 5.955355 AGGCTAGATAACAGTCTTCTTCACT 59.045 40.000 0.00 0.00 0.00 3.41
4442 9980 6.439058 AGGCTAGATAACAGTCTTCTTCACTT 59.561 38.462 0.00 0.00 0.00 3.16
4443 9981 6.533367 GGCTAGATAACAGTCTTCTTCACTTG 59.467 42.308 0.00 0.00 0.00 3.16
4444 9982 6.035542 GCTAGATAACAGTCTTCTTCACTTGC 59.964 42.308 0.00 0.00 0.00 4.01
4445 9983 5.858381 AGATAACAGTCTTCTTCACTTGCA 58.142 37.500 0.00 0.00 0.00 4.08
4446 9984 6.291377 AGATAACAGTCTTCTTCACTTGCAA 58.709 36.000 0.00 0.00 0.00 4.08
4447 9985 4.622701 AACAGTCTTCTTCACTTGCAAC 57.377 40.909 0.00 0.00 0.00 4.17
4448 9986 2.945668 ACAGTCTTCTTCACTTGCAACC 59.054 45.455 0.00 0.00 0.00 3.77
4449 9987 2.032549 CAGTCTTCTTCACTTGCAACCG 60.033 50.000 0.00 0.00 0.00 4.44
4450 9988 1.940613 GTCTTCTTCACTTGCAACCGT 59.059 47.619 0.00 0.00 0.00 4.83
4451 9989 3.128349 GTCTTCTTCACTTGCAACCGTA 58.872 45.455 0.00 0.00 0.00 4.02
4452 9990 3.059800 GTCTTCTTCACTTGCAACCGTAC 60.060 47.826 0.00 0.00 0.00 3.67
4453 9991 2.605837 TCTTCACTTGCAACCGTACA 57.394 45.000 0.00 0.00 0.00 2.90
4454 9992 3.120321 TCTTCACTTGCAACCGTACAT 57.880 42.857 0.00 0.00 0.00 2.29
4455 9993 4.260139 TCTTCACTTGCAACCGTACATA 57.740 40.909 0.00 0.00 0.00 2.29
4456 9994 4.827692 TCTTCACTTGCAACCGTACATAT 58.172 39.130 0.00 0.00 0.00 1.78
4459 9997 6.874664 TCTTCACTTGCAACCGTACATATAAA 59.125 34.615 0.00 0.00 0.00 1.40
4462 10000 8.896320 TCACTTGCAACCGTACATATAAATAT 57.104 30.769 0.00 0.00 0.00 1.28
4487 10025 7.807977 AATACAAATTTGATGTAGCGATCCT 57.192 32.000 24.64 0.00 36.75 3.24
4500 10038 4.052159 AGCGATCCTGTCTCAAATAGTG 57.948 45.455 0.00 0.00 0.00 2.74
4515 10054 5.245751 TCAAATAGTGGTGGTTGCATCAAAT 59.754 36.000 0.00 0.00 0.00 2.32
4520 10059 4.158394 AGTGGTGGTTGCATCAAATATGAC 59.842 41.667 0.00 0.00 38.69 3.06
4524 10063 3.755905 TGGTTGCATCAAATATGACGTGT 59.244 39.130 0.00 0.00 38.69 4.49
4525 10064 4.097714 GGTTGCATCAAATATGACGTGTG 58.902 43.478 0.00 0.00 38.69 3.82
4542 10081 2.611751 GTGTGTCACATGTAGTTGCACA 59.388 45.455 9.31 6.99 34.08 4.57
4545 10084 4.035017 GTGTCACATGTAGTTGCACAAAC 58.965 43.478 0.00 0.00 39.24 2.93
4552 10091 0.579630 TAGTTGCACAAACGTGAGCG 59.420 50.000 0.00 0.00 43.56 5.03
4553 10092 1.654137 GTTGCACAAACGTGAGCGG 60.654 57.895 0.00 0.00 43.56 5.52
4555 10094 4.683334 GCACAAACGTGAGCGGGC 62.683 66.667 0.00 0.00 43.45 6.13
4611 10155 3.617706 CACACATGTTGCACAATTGTTGT 59.382 39.130 8.77 6.94 46.75 3.32
4624 10168 4.142049 ACAATTGTTGTGACGGGTCAAATT 60.142 37.500 4.92 3.61 43.48 1.82
4650 10194 1.599240 TGTGCGCCACATGCAACTA 60.599 52.632 4.18 0.00 45.23 2.24
4651 10195 1.135315 GTGCGCCACATGCAACTAG 59.865 57.895 4.18 0.00 45.23 2.57
4652 10196 1.302431 TGCGCCACATGCAACTAGT 60.302 52.632 4.18 0.00 39.87 2.57
4681 10225 9.817809 TCATGCGACTAGTAGAAAAATCTAAAT 57.182 29.630 7.23 0.00 0.00 1.40
4723 10268 0.040425 CCAACTTTGCACAGGTACGC 60.040 55.000 4.63 0.00 0.00 4.42
4745 10290 4.860907 GCACTGGCATGAGAACATAAAAAG 59.139 41.667 0.00 0.00 40.72 2.27
4747 10292 6.680810 CACTGGCATGAGAACATAAAAAGAA 58.319 36.000 0.00 0.00 35.09 2.52
4748 10293 7.147312 CACTGGCATGAGAACATAAAAAGAAA 58.853 34.615 0.00 0.00 35.09 2.52
4749 10294 7.652909 CACTGGCATGAGAACATAAAAAGAAAA 59.347 33.333 0.00 0.00 35.09 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 9.868277 TTCGGTTTTAAAATGCATAGATGAATT 57.132 25.926 0.00 0.00 37.65 2.17
20 21 6.196353 CGGTTCGGTTTTAAAATGCATAGATG 59.804 38.462 0.00 0.00 0.00 2.90
21 22 6.094325 TCGGTTCGGTTTTAAAATGCATAGAT 59.906 34.615 0.00 0.00 0.00 1.98
23 24 5.632959 TCGGTTCGGTTTTAAAATGCATAG 58.367 37.500 0.00 0.00 0.00 2.23
25 26 4.506886 TCGGTTCGGTTTTAAAATGCAT 57.493 36.364 3.52 0.00 0.00 3.96
122 123 7.666623 ACCAAAGTTCAAATCGGTATGAAAAT 58.333 30.769 0.00 0.00 37.31 1.82
448 451 4.216366 TGACGCGAATTTGAAAATGACA 57.784 36.364 15.93 0.00 0.00 3.58
507 510 8.761575 TCGGTTTCGGTATATACCAAATTATC 57.238 34.615 27.58 15.11 46.80 1.75
653 660 1.927174 CGCTGCACAGTATAAGGTGAC 59.073 52.381 8.74 2.39 37.18 3.67
658 665 3.150848 TCAGACGCTGCACAGTATAAG 57.849 47.619 0.00 0.00 0.00 1.73
659 666 3.801114 ATCAGACGCTGCACAGTATAA 57.199 42.857 0.00 0.00 0.00 0.98
674 681 4.465660 GCTAGATGCCATCCTAGAATCAGA 59.534 45.833 0.00 0.00 35.55 3.27
676 683 4.423913 AGCTAGATGCCATCCTAGAATCA 58.576 43.478 0.00 0.00 44.23 2.57
678 685 4.686891 AGAGCTAGATGCCATCCTAGAAT 58.313 43.478 0.00 0.00 44.23 2.40
683 690 2.250031 CTGAGAGCTAGATGCCATCCT 58.750 52.381 0.00 0.00 44.23 3.24
684 691 1.275856 CCTGAGAGCTAGATGCCATCC 59.724 57.143 0.00 0.00 44.23 3.51
688 695 1.006337 CGCCTGAGAGCTAGATGCC 60.006 63.158 0.00 0.00 44.23 4.40
701 708 3.797256 GCTAAGTCAGTGTATAACGCCTG 59.203 47.826 0.00 0.00 0.00 4.85
710 717 5.181245 GCCTGAAAAATGCTAAGTCAGTGTA 59.819 40.000 0.00 0.00 35.07 2.90
712 719 4.022935 TGCCTGAAAAATGCTAAGTCAGTG 60.023 41.667 0.00 0.00 35.07 3.66
715 722 5.336690 GGATTGCCTGAAAAATGCTAAGTCA 60.337 40.000 0.00 0.00 0.00 3.41
729 736 2.203056 CGCATCCGGATTGCCTGA 60.203 61.111 24.10 0.00 0.00 3.86
758 765 2.201436 CTCTGACAGGCGCTACACGT 62.201 60.000 7.64 0.00 46.11 4.49
768 775 1.135731 GCGTCGTCTCTCTGACAGG 59.864 63.158 1.81 0.00 45.60 4.00
776 783 1.199558 GAACAGTTAGGCGTCGTCTCT 59.800 52.381 0.73 0.00 0.00 3.10
783 790 2.047560 GCCCGAACAGTTAGGCGT 60.048 61.111 10.38 0.00 35.30 5.68
785 792 2.567564 TAGCGCCCGAACAGTTAGGC 62.568 60.000 14.51 14.51 42.18 3.93
786 793 0.804933 GTAGCGCCCGAACAGTTAGG 60.805 60.000 2.29 5.46 0.00 2.69
787 794 0.108992 TGTAGCGCCCGAACAGTTAG 60.109 55.000 2.29 0.00 0.00 2.34
788 795 0.388907 GTGTAGCGCCCGAACAGTTA 60.389 55.000 2.29 0.00 0.00 2.24
790 797 2.048503 GTGTAGCGCCCGAACAGT 60.049 61.111 2.29 0.00 0.00 3.55
792 799 1.666553 CTTGTGTAGCGCCCGAACA 60.667 57.895 2.29 0.44 0.00 3.18
793 800 2.388232 CCTTGTGTAGCGCCCGAAC 61.388 63.158 2.29 0.00 0.00 3.95
794 801 2.047655 CCTTGTGTAGCGCCCGAA 60.048 61.111 2.29 0.00 0.00 4.30
799 822 0.108804 TAGCTGACCTTGTGTAGCGC 60.109 55.000 0.00 0.00 40.92 5.92
818 844 2.875933 TGTCCGCGAAAAAGTTTCATCT 59.124 40.909 8.23 0.00 0.00 2.90
840 866 8.889000 GTGGCGAAACGATATCATAAAATAAAC 58.111 33.333 3.12 0.00 0.00 2.01
946 975 0.455410 CTCAGCCTCGAGGACAAGAG 59.545 60.000 35.69 26.58 37.39 2.85
947 976 2.572733 CTCAGCCTCGAGGACAAGA 58.427 57.895 35.69 22.26 37.39 3.02
1738 1841 0.413832 AGAGGGAGAGGTTGTAGGCA 59.586 55.000 0.00 0.00 0.00 4.75
2042 4031 3.067320 TCGAGTATTCTGTCAGCTCCATG 59.933 47.826 0.00 0.00 0.00 3.66
2176 4187 9.883142 TCTTGAACAAAACAAGAACCAATAAAT 57.117 25.926 0.00 0.00 46.68 1.40
2212 4223 1.764134 AGTTGACGGTTGGTGAAGGTA 59.236 47.619 0.00 0.00 0.00 3.08
2213 4224 0.544697 AGTTGACGGTTGGTGAAGGT 59.455 50.000 0.00 0.00 0.00 3.50
2214 4225 1.675552 AAGTTGACGGTTGGTGAAGG 58.324 50.000 0.00 0.00 0.00 3.46
2237 4253 7.226128 GTGGTAGCAGTTTGTTTAGAAACTACT 59.774 37.037 9.39 9.39 42.96 2.57
2238 4254 7.350467 GTGGTAGCAGTTTGTTTAGAAACTAC 58.650 38.462 4.90 0.57 42.96 2.73
2265 4284 1.270550 ACGTAAACAGGTAGGTCCGTG 59.729 52.381 0.00 0.00 41.99 4.94
2267 4286 2.730550 AACGTAAACAGGTAGGTCCG 57.269 50.000 0.00 0.00 41.99 4.79
2268 4287 4.379652 TGAAAACGTAAACAGGTAGGTCC 58.620 43.478 0.00 0.00 0.00 4.46
2269 4288 4.084171 GCTGAAAACGTAAACAGGTAGGTC 60.084 45.833 14.38 0.00 0.00 3.85
2292 4317 1.135257 AGCTCATTGGAGACTCGAACG 60.135 52.381 1.62 0.00 44.26 3.95
2333 4358 3.384275 ATGACGGCGTGCATGGCTA 62.384 57.895 27.59 15.43 0.00 3.93
2478 4503 1.002011 GGTCAAGCCAAGGAGTCCC 60.002 63.158 5.25 0.00 37.17 4.46
2543 4568 5.954752 TGACTGTGAGAGGAAGAATCATAGT 59.045 40.000 3.87 3.87 44.78 2.12
2544 4569 6.320926 TCTGACTGTGAGAGGAAGAATCATAG 59.679 42.308 0.00 0.00 37.95 2.23
2605 5137 0.962489 CAGAGACGAGGTTGAGGTGT 59.038 55.000 0.00 0.00 0.00 4.16
2629 5179 2.554806 AAATCATCACGCATGCTGTG 57.445 45.000 26.32 26.32 38.70 3.66
2630 5180 4.906065 ATAAAATCATCACGCATGCTGT 57.094 36.364 17.13 12.55 31.70 4.40
2631 5181 6.035220 ACAAAATAAAATCATCACGCATGCTG 59.965 34.615 17.13 12.94 31.70 4.41
2632 5182 6.101332 ACAAAATAAAATCATCACGCATGCT 58.899 32.000 17.13 0.00 31.70 3.79
2633 5183 6.335176 ACAAAATAAAATCATCACGCATGC 57.665 33.333 7.91 7.91 31.70 4.06
2634 5184 7.894247 GTGAACAAAATAAAATCATCACGCATG 59.106 33.333 0.00 0.00 0.00 4.06
2635 5185 7.952339 GTGAACAAAATAAAATCATCACGCAT 58.048 30.769 0.00 0.00 0.00 4.73
2636 5186 7.332003 GTGAACAAAATAAAATCATCACGCA 57.668 32.000 0.00 0.00 0.00 5.24
2639 5189 9.559958 AGATCGTGAACAAAATAAAATCATCAC 57.440 29.630 0.00 0.00 34.19 3.06
2640 5190 9.773328 GAGATCGTGAACAAAATAAAATCATCA 57.227 29.630 0.00 0.00 0.00 3.07
2641 5191 9.773328 TGAGATCGTGAACAAAATAAAATCATC 57.227 29.630 0.00 0.00 0.00 2.92
2643 5193 9.558648 CATGAGATCGTGAACAAAATAAAATCA 57.441 29.630 0.00 0.00 34.90 2.57
2644 5194 9.773328 TCATGAGATCGTGAACAAAATAAAATC 57.227 29.630 2.24 0.00 38.80 2.17
2646 5196 9.558648 CATCATGAGATCGTGAACAAAATAAAA 57.441 29.630 8.72 0.00 44.15 1.52
2647 5197 8.183536 CCATCATGAGATCGTGAACAAAATAAA 58.816 33.333 8.72 0.00 44.15 1.40
2648 5198 7.336679 ACCATCATGAGATCGTGAACAAAATAA 59.663 33.333 8.72 0.00 44.15 1.40
2649 5199 6.823182 ACCATCATGAGATCGTGAACAAAATA 59.177 34.615 8.72 0.00 44.15 1.40
2650 5200 5.649395 ACCATCATGAGATCGTGAACAAAAT 59.351 36.000 8.72 0.00 44.15 1.82
2651 5201 5.003160 ACCATCATGAGATCGTGAACAAAA 58.997 37.500 8.72 0.00 44.15 2.44
2652 5202 4.578871 ACCATCATGAGATCGTGAACAAA 58.421 39.130 8.72 0.00 44.15 2.83
2653 5203 4.206477 ACCATCATGAGATCGTGAACAA 57.794 40.909 8.72 0.00 44.15 2.83
2654 5204 3.893326 ACCATCATGAGATCGTGAACA 57.107 42.857 8.72 0.00 44.15 3.18
2655 5205 4.183865 TGAACCATCATGAGATCGTGAAC 58.816 43.478 8.72 0.98 44.15 3.18
2656 5206 4.436332 CTGAACCATCATGAGATCGTGAA 58.564 43.478 8.72 0.00 44.15 3.18
2657 5207 3.181472 CCTGAACCATCATGAGATCGTGA 60.181 47.826 7.18 7.18 44.95 4.35
2658 5208 3.129109 CCTGAACCATCATGAGATCGTG 58.871 50.000 0.09 0.00 34.37 4.35
2659 5209 2.103771 CCCTGAACCATCATGAGATCGT 59.896 50.000 0.09 0.00 34.37 3.73
2660 5210 2.549563 CCCCTGAACCATCATGAGATCG 60.550 54.545 0.09 0.00 34.37 3.69
2713 5282 2.138320 CAGCCTAGGTTGATGTATGCG 58.862 52.381 20.30 0.00 0.00 4.73
2770 5339 4.532521 ACTCCATAGTTGAACTTGTAGCCT 59.467 41.667 1.97 0.00 29.00 4.58
2811 5380 5.125900 TGCCACTCTCCAATGAAATAACATG 59.874 40.000 0.00 0.00 0.00 3.21
2814 5383 4.702131 AGTGCCACTCTCCAATGAAATAAC 59.298 41.667 0.00 0.00 0.00 1.89
2821 7516 3.340814 AAGTAGTGCCACTCTCCAATG 57.659 47.619 0.00 0.00 0.00 2.82
2822 7517 3.307762 GGAAAGTAGTGCCACTCTCCAAT 60.308 47.826 0.00 0.00 0.00 3.16
2823 7518 2.038557 GGAAAGTAGTGCCACTCTCCAA 59.961 50.000 0.00 0.00 0.00 3.53
2824 7519 1.623811 GGAAAGTAGTGCCACTCTCCA 59.376 52.381 0.00 0.00 0.00 3.86
2825 7520 1.066071 GGGAAAGTAGTGCCACTCTCC 60.066 57.143 0.00 3.69 0.00 3.71
2826 7521 1.903183 AGGGAAAGTAGTGCCACTCTC 59.097 52.381 0.00 0.00 0.00 3.20
2827 7522 2.031495 AGGGAAAGTAGTGCCACTCT 57.969 50.000 0.00 0.00 0.00 3.24
2828 7523 4.489306 AATAGGGAAAGTAGTGCCACTC 57.511 45.455 0.00 0.00 0.00 3.51
2829 7524 4.288626 TCAAATAGGGAAAGTAGTGCCACT 59.711 41.667 1.54 1.54 0.00 4.00
2830 7525 4.585879 TCAAATAGGGAAAGTAGTGCCAC 58.414 43.478 0.00 0.00 0.00 5.01
2831 7526 4.919774 TCAAATAGGGAAAGTAGTGCCA 57.080 40.909 0.00 0.00 0.00 4.92
2832 7527 5.437060 TGATCAAATAGGGAAAGTAGTGCC 58.563 41.667 0.00 0.00 0.00 5.01
2833 7528 7.283127 TCAATGATCAAATAGGGAAAGTAGTGC 59.717 37.037 0.00 0.00 0.00 4.40
2834 7529 8.737168 TCAATGATCAAATAGGGAAAGTAGTG 57.263 34.615 0.00 0.00 0.00 2.74
2835 7530 9.178758 GTTCAATGATCAAATAGGGAAAGTAGT 57.821 33.333 0.00 0.00 0.00 2.73
2836 7531 9.401058 AGTTCAATGATCAAATAGGGAAAGTAG 57.599 33.333 0.00 0.00 0.00 2.57
2838 7533 9.178758 GTAGTTCAATGATCAAATAGGGAAAGT 57.821 33.333 0.00 0.00 0.00 2.66
2839 7534 9.401058 AGTAGTTCAATGATCAAATAGGGAAAG 57.599 33.333 0.00 0.00 0.00 2.62
2841 7536 9.832445 GTAGTAGTTCAATGATCAAATAGGGAA 57.168 33.333 0.00 0.00 0.00 3.97
2842 7537 8.988060 TGTAGTAGTTCAATGATCAAATAGGGA 58.012 33.333 0.00 0.00 0.00 4.20
2843 7538 9.784531 ATGTAGTAGTTCAATGATCAAATAGGG 57.215 33.333 0.00 0.00 0.00 3.53
2849 7544 9.612066 TGCAATATGTAGTAGTTCAATGATCAA 57.388 29.630 0.00 0.00 0.00 2.57
2850 7545 9.612066 TTGCAATATGTAGTAGTTCAATGATCA 57.388 29.630 0.00 0.00 0.00 2.92
2851 7546 9.869844 GTTGCAATATGTAGTAGTTCAATGATC 57.130 33.333 0.59 0.00 0.00 2.92
2852 7547 9.394767 TGTTGCAATATGTAGTAGTTCAATGAT 57.605 29.630 0.59 0.00 0.00 2.45
2853 7548 8.785329 TGTTGCAATATGTAGTAGTTCAATGA 57.215 30.769 0.59 0.00 0.00 2.57
2922 7673 2.845659 TCCCCTGAAATTAGAGCCAGA 58.154 47.619 0.00 0.00 0.00 3.86
3030 7813 5.072741 CGGAAGGGTGATGGAAATTCATAT 58.927 41.667 0.00 0.00 0.00 1.78
3031 7814 4.460263 CGGAAGGGTGATGGAAATTCATA 58.540 43.478 0.00 0.00 0.00 2.15
3032 7815 3.290710 CGGAAGGGTGATGGAAATTCAT 58.709 45.455 0.00 0.00 0.00 2.57
3033 7816 2.722094 CGGAAGGGTGATGGAAATTCA 58.278 47.619 0.00 0.00 0.00 2.57
3071 7854 1.884235 TTGACACACACACACACACA 58.116 45.000 0.00 0.00 0.00 3.72
3072 7855 2.977169 GTTTTGACACACACACACACAC 59.023 45.455 0.00 0.00 0.00 3.82
3074 7857 3.552604 AGTTTTGACACACACACACAC 57.447 42.857 0.00 0.00 0.00 3.82
3076 7859 4.153958 TCAAGTTTTGACACACACACAC 57.846 40.909 0.00 0.00 34.08 3.82
3234 8069 7.963532 AGTATGATATGTGGTTACGGAAGATT 58.036 34.615 0.00 0.00 0.00 2.40
3235 8070 7.540474 AGTATGATATGTGGTTACGGAAGAT 57.460 36.000 0.00 0.00 0.00 2.40
3236 8071 6.971726 AGTATGATATGTGGTTACGGAAGA 57.028 37.500 0.00 0.00 0.00 2.87
3334 8799 1.246737 GCAAGGTGGAAAGCTCAGGG 61.247 60.000 0.00 0.00 0.00 4.45
3429 8907 5.009110 TGCTTAGGTGATCTAGTCATCTTCG 59.991 44.000 11.67 6.49 46.20 3.79
3554 9061 5.723405 AGCCAGATGCCAGATACTTGATATA 59.277 40.000 0.00 0.00 42.71 0.86
3641 9148 4.833469 TTACAATATGCTCACAACGACG 57.167 40.909 0.00 0.00 0.00 5.12
3714 9221 9.956720 GGGACTTTATTGATTAATGAACATCAG 57.043 33.333 0.00 0.00 31.04 2.90
3757 9264 3.046283 ACCTGGCTTCCTTTCCTTTTT 57.954 42.857 0.00 0.00 0.00 1.94
3758 9265 2.700371 CAACCTGGCTTCCTTTCCTTTT 59.300 45.455 0.00 0.00 0.00 2.27
3764 9271 2.452600 TGTTCAACCTGGCTTCCTTT 57.547 45.000 0.00 0.00 0.00 3.11
3766 9273 1.915141 CATGTTCAACCTGGCTTCCT 58.085 50.000 0.00 0.00 0.00 3.36
3771 9278 0.392336 TTTGGCATGTTCAACCTGGC 59.608 50.000 11.82 11.82 39.18 4.85
3803 9310 5.164090 CGTAACGATGCATGTACATCCATAC 60.164 44.000 12.30 6.33 42.91 2.39
3884 9393 7.650903 ACAAAGCTGATGATTTTCTTTTCAGAC 59.349 33.333 6.76 0.00 36.72 3.51
3893 9402 5.034554 TGTCGACAAAGCTGATGATTTTC 57.965 39.130 17.62 0.00 28.28 2.29
3911 9420 0.669318 AGTGCAACGGTACCATGTCG 60.669 55.000 13.54 0.00 45.86 4.35
3924 9451 6.262049 ACACAATTATGTAACTCACAGTGCAA 59.738 34.615 0.00 0.00 41.51 4.08
3958 9485 5.463154 AGTAGATGAGTTCTAGGCATTCCT 58.537 41.667 0.00 0.00 46.57 3.36
3960 9487 5.279256 GGGAGTAGATGAGTTCTAGGCATTC 60.279 48.000 0.00 0.00 37.62 2.67
3966 9493 5.690865 ACAGAGGGAGTAGATGAGTTCTAG 58.309 45.833 0.00 0.00 37.62 2.43
3969 9496 3.634910 GGACAGAGGGAGTAGATGAGTTC 59.365 52.174 0.00 0.00 0.00 3.01
3980 9507 4.263506 ACACTTATTTTGGGACAGAGGGAG 60.264 45.833 0.00 0.00 42.39 4.30
3981 9508 3.655777 ACACTTATTTTGGGACAGAGGGA 59.344 43.478 0.00 0.00 42.39 4.20
3982 9509 4.010349 GACACTTATTTTGGGACAGAGGG 58.990 47.826 0.00 0.00 42.39 4.30
3983 9510 4.911390 AGACACTTATTTTGGGACAGAGG 58.089 43.478 0.00 0.00 42.39 3.69
3984 9511 5.997746 TCAAGACACTTATTTTGGGACAGAG 59.002 40.000 0.00 0.00 42.39 3.35
3985 9512 5.935945 TCAAGACACTTATTTTGGGACAGA 58.064 37.500 0.00 0.00 42.39 3.41
3986 9513 6.656693 AGATCAAGACACTTATTTTGGGACAG 59.343 38.462 0.00 0.00 42.39 3.51
3987 9514 6.542821 AGATCAAGACACTTATTTTGGGACA 58.457 36.000 0.00 0.00 0.00 4.02
3988 9515 7.454260 AAGATCAAGACACTTATTTTGGGAC 57.546 36.000 0.00 0.00 0.00 4.46
3989 9516 8.383175 ACTAAGATCAAGACACTTATTTTGGGA 58.617 33.333 0.00 0.00 0.00 4.37
3990 9517 8.567285 ACTAAGATCAAGACACTTATTTTGGG 57.433 34.615 0.00 0.00 0.00 4.12
4023 9550 9.565090 TCTCAACTTTGTACTAACTCTAGTGTA 57.435 33.333 0.00 0.00 38.85 2.90
4024 9551 8.351461 GTCTCAACTTTGTACTAACTCTAGTGT 58.649 37.037 0.00 0.00 38.85 3.55
4025 9552 8.350722 TGTCTCAACTTTGTACTAACTCTAGTG 58.649 37.037 0.00 0.00 38.85 2.74
4026 9553 8.351461 GTGTCTCAACTTTGTACTAACTCTAGT 58.649 37.037 0.00 0.00 41.43 2.57
4027 9554 8.569641 AGTGTCTCAACTTTGTACTAACTCTAG 58.430 37.037 0.00 0.00 0.00 2.43
4028 9555 8.461249 AGTGTCTCAACTTTGTACTAACTCTA 57.539 34.615 0.00 0.00 0.00 2.43
4029 9556 7.349412 AGTGTCTCAACTTTGTACTAACTCT 57.651 36.000 0.00 0.00 0.00 3.24
4030 9557 9.694137 ATAAGTGTCTCAACTTTGTACTAACTC 57.306 33.333 0.00 0.00 40.77 3.01
4038 9565 8.837389 GTCCTAAAATAAGTGTCTCAACTTTGT 58.163 33.333 0.00 0.00 40.77 2.83
4039 9566 8.009974 CGTCCTAAAATAAGTGTCTCAACTTTG 58.990 37.037 0.00 0.00 40.77 2.77
4040 9567 7.172703 CCGTCCTAAAATAAGTGTCTCAACTTT 59.827 37.037 0.00 0.00 40.77 2.66
4041 9568 6.649557 CCGTCCTAAAATAAGTGTCTCAACTT 59.350 38.462 0.00 0.00 42.89 2.66
4042 9569 6.014840 TCCGTCCTAAAATAAGTGTCTCAACT 60.015 38.462 0.00 0.00 0.00 3.16
4043 9570 6.161381 TCCGTCCTAAAATAAGTGTCTCAAC 58.839 40.000 0.00 0.00 0.00 3.18
4044 9571 6.349243 TCCGTCCTAAAATAAGTGTCTCAA 57.651 37.500 0.00 0.00 0.00 3.02
4045 9572 5.105473 CCTCCGTCCTAAAATAAGTGTCTCA 60.105 44.000 0.00 0.00 0.00 3.27
4046 9573 5.349809 CCTCCGTCCTAAAATAAGTGTCTC 58.650 45.833 0.00 0.00 0.00 3.36
4047 9574 4.161754 CCCTCCGTCCTAAAATAAGTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
4048 9575 4.161001 TCCCTCCGTCCTAAAATAAGTGTC 59.839 45.833 0.00 0.00 0.00 3.67
4049 9576 4.098894 TCCCTCCGTCCTAAAATAAGTGT 58.901 43.478 0.00 0.00 0.00 3.55
4050 9577 4.161754 ACTCCCTCCGTCCTAAAATAAGTG 59.838 45.833 0.00 0.00 0.00 3.16
4051 9578 4.359996 ACTCCCTCCGTCCTAAAATAAGT 58.640 43.478 0.00 0.00 0.00 2.24
4052 9579 5.832060 TCTACTCCCTCCGTCCTAAAATAAG 59.168 44.000 0.00 0.00 0.00 1.73
4053 9580 5.769835 TCTACTCCCTCCGTCCTAAAATAA 58.230 41.667 0.00 0.00 0.00 1.40
4054 9581 5.393068 TCTACTCCCTCCGTCCTAAAATA 57.607 43.478 0.00 0.00 0.00 1.40
4055 9582 4.261411 TCTACTCCCTCCGTCCTAAAAT 57.739 45.455 0.00 0.00 0.00 1.82
4056 9583 3.744940 TCTACTCCCTCCGTCCTAAAA 57.255 47.619 0.00 0.00 0.00 1.52
4057 9584 3.203710 TCATCTACTCCCTCCGTCCTAAA 59.796 47.826 0.00 0.00 0.00 1.85
4058 9585 2.781757 TCATCTACTCCCTCCGTCCTAA 59.218 50.000 0.00 0.00 0.00 2.69
4059 9586 2.372504 CTCATCTACTCCCTCCGTCCTA 59.627 54.545 0.00 0.00 0.00 2.94
4060 9587 1.144093 CTCATCTACTCCCTCCGTCCT 59.856 57.143 0.00 0.00 0.00 3.85
4061 9588 1.143277 TCTCATCTACTCCCTCCGTCC 59.857 57.143 0.00 0.00 0.00 4.79
4062 9589 2.642154 TCTCATCTACTCCCTCCGTC 57.358 55.000 0.00 0.00 0.00 4.79
4063 9590 4.938575 ATATCTCATCTACTCCCTCCGT 57.061 45.455 0.00 0.00 0.00 4.69
4064 9591 5.996644 AGTATATCTCATCTACTCCCTCCG 58.003 45.833 0.00 0.00 0.00 4.63
4065 9592 7.123547 CCAAAGTATATCTCATCTACTCCCTCC 59.876 44.444 0.00 0.00 0.00 4.30
4066 9593 7.672239 ACCAAAGTATATCTCATCTACTCCCTC 59.328 40.741 0.00 0.00 0.00 4.30
4067 9594 7.540183 ACCAAAGTATATCTCATCTACTCCCT 58.460 38.462 0.00 0.00 0.00 4.20
4068 9595 7.672239 AGACCAAAGTATATCTCATCTACTCCC 59.328 40.741 0.00 0.00 0.00 4.30
4069 9596 8.644374 AGACCAAAGTATATCTCATCTACTCC 57.356 38.462 0.00 0.00 0.00 3.85
4070 9597 9.290988 TGAGACCAAAGTATATCTCATCTACTC 57.709 37.037 0.00 0.00 41.99 2.59
4086 9613 8.108551 AGAAAAAGAGATGAATGAGACCAAAG 57.891 34.615 0.00 0.00 0.00 2.77
4118 9645 8.758829 ACAATGACAACCTCTATTAGTGATGTA 58.241 33.333 0.00 0.00 0.00 2.29
4119 9646 7.624549 ACAATGACAACCTCTATTAGTGATGT 58.375 34.615 0.00 0.55 0.00 3.06
4131 9658 3.641436 AGGGGAAAAACAATGACAACCTC 59.359 43.478 0.00 0.00 0.00 3.85
4132 9659 3.387699 CAGGGGAAAAACAATGACAACCT 59.612 43.478 0.00 0.00 0.00 3.50
4135 9662 3.431486 GCACAGGGGAAAAACAATGACAA 60.431 43.478 0.00 0.00 0.00 3.18
4138 9665 2.364970 CAGCACAGGGGAAAAACAATGA 59.635 45.455 0.00 0.00 0.00 2.57
4184 9712 0.888619 GTACAAAAGAAGCCTGGCCC 59.111 55.000 16.57 7.88 0.00 5.80
4185 9713 1.911057 AGTACAAAAGAAGCCTGGCC 58.089 50.000 16.57 0.00 0.00 5.36
4207 9735 2.433318 GCAGCAGTGGACGAGGAC 60.433 66.667 0.00 0.00 0.00 3.85
4209 9737 2.031516 CAAGCAGCAGTGGACGAGG 61.032 63.158 0.00 0.00 0.00 4.63
4221 9759 6.587608 AGAAAAAGAAAACAAGACACAAGCAG 59.412 34.615 0.00 0.00 0.00 4.24
4239 9777 8.355088 GCAAACGTAAAAAGCAAAAAGAAAAAG 58.645 29.630 0.00 0.00 0.00 2.27
4244 9782 6.456181 CCATGCAAACGTAAAAAGCAAAAAGA 60.456 34.615 0.00 0.00 38.85 2.52
4245 9783 5.676310 CCATGCAAACGTAAAAAGCAAAAAG 59.324 36.000 0.00 0.00 38.85 2.27
4246 9784 5.563842 CCATGCAAACGTAAAAAGCAAAAA 58.436 33.333 0.00 0.00 38.85 1.94
4247 9785 4.494855 GCCATGCAAACGTAAAAAGCAAAA 60.495 37.500 0.00 0.00 38.85 2.44
4248 9786 3.001736 GCCATGCAAACGTAAAAAGCAAA 59.998 39.130 0.00 0.00 38.85 3.68
4249 9787 2.541762 GCCATGCAAACGTAAAAAGCAA 59.458 40.909 0.00 0.00 38.85 3.91
4250 9788 2.131183 GCCATGCAAACGTAAAAAGCA 58.869 42.857 0.00 0.00 39.79 3.91
4251 9789 2.155539 CAGCCATGCAAACGTAAAAAGC 59.844 45.455 0.00 0.00 0.00 3.51
4252 9790 2.730928 CCAGCCATGCAAACGTAAAAAG 59.269 45.455 0.00 0.00 0.00 2.27
4253 9791 2.362397 TCCAGCCATGCAAACGTAAAAA 59.638 40.909 0.00 0.00 0.00 1.94
4254 9792 1.957177 TCCAGCCATGCAAACGTAAAA 59.043 42.857 0.00 0.00 0.00 1.52
4255 9793 1.539388 CTCCAGCCATGCAAACGTAAA 59.461 47.619 0.00 0.00 0.00 2.01
4256 9794 1.164411 CTCCAGCCATGCAAACGTAA 58.836 50.000 0.00 0.00 0.00 3.18
4257 9795 0.036164 ACTCCAGCCATGCAAACGTA 59.964 50.000 0.00 0.00 0.00 3.57
4260 9798 3.193267 TCAAATACTCCAGCCATGCAAAC 59.807 43.478 0.00 0.00 0.00 2.93
4291 9829 3.391296 TGTGTCTAAGCACTTCCTTCCTT 59.609 43.478 0.00 0.00 39.89 3.36
4292 9830 2.972713 TGTGTCTAAGCACTTCCTTCCT 59.027 45.455 0.00 0.00 39.89 3.36
4308 9846 3.254060 ACATGCGTAGAAGATGTGTGTC 58.746 45.455 0.00 0.00 0.00 3.67
4311 9849 3.592898 TGACATGCGTAGAAGATGTGT 57.407 42.857 0.00 0.00 30.39 3.72
4314 9852 4.742167 CCTACTTGACATGCGTAGAAGATG 59.258 45.833 11.43 0.00 34.07 2.90
4343 9881 2.022195 AGCAGTGAACATGATGCATCC 58.978 47.619 23.67 8.50 41.14 3.51
4344 9882 3.066369 CAGCAGTGAACATGATGCATC 57.934 47.619 20.14 20.14 41.14 3.91
4361 9899 5.180367 AGAAGAAGAAAGAAACAAGCAGC 57.820 39.130 0.00 0.00 0.00 5.25
4385 9923 8.095792 AGTAAATTGACATGATCCATGCAAAAA 58.904 29.630 0.00 4.74 44.80 1.94
4386 9924 7.613585 AGTAAATTGACATGATCCATGCAAAA 58.386 30.769 0.00 6.50 44.80 2.44
4404 9942 6.552350 TGTTATCTAGCCTACGGGAGTAAATT 59.448 38.462 0.00 0.00 46.10 1.82
4405 9943 6.073314 TGTTATCTAGCCTACGGGAGTAAAT 58.927 40.000 0.00 0.00 46.10 1.40
4413 9951 4.822896 AGAAGACTGTTATCTAGCCTACGG 59.177 45.833 0.00 0.00 0.00 4.02
4414 9952 6.038382 TGAAGAAGACTGTTATCTAGCCTACG 59.962 42.308 0.00 0.00 0.00 3.51
4415 9953 7.067737 AGTGAAGAAGACTGTTATCTAGCCTAC 59.932 40.741 0.00 0.00 0.00 3.18
4416 9954 7.120051 AGTGAAGAAGACTGTTATCTAGCCTA 58.880 38.462 0.00 0.00 0.00 3.93
4417 9955 5.955355 AGTGAAGAAGACTGTTATCTAGCCT 59.045 40.000 0.00 0.00 0.00 4.58
4418 9956 6.215495 AGTGAAGAAGACTGTTATCTAGCC 57.785 41.667 0.00 0.00 0.00 3.93
4420 9958 7.093354 TGCAAGTGAAGAAGACTGTTATCTAG 58.907 38.462 0.00 0.00 0.00 2.43
4421 9959 6.993079 TGCAAGTGAAGAAGACTGTTATCTA 58.007 36.000 0.00 0.00 0.00 1.98
4422 9960 5.858381 TGCAAGTGAAGAAGACTGTTATCT 58.142 37.500 0.00 0.00 0.00 1.98
4423 9961 6.366630 GTTGCAAGTGAAGAAGACTGTTATC 58.633 40.000 0.00 0.00 0.00 1.75
4424 9962 5.239525 GGTTGCAAGTGAAGAAGACTGTTAT 59.760 40.000 0.00 0.00 0.00 1.89
4425 9963 4.574828 GGTTGCAAGTGAAGAAGACTGTTA 59.425 41.667 0.00 0.00 0.00 2.41
4426 9964 3.378427 GGTTGCAAGTGAAGAAGACTGTT 59.622 43.478 0.00 0.00 0.00 3.16
4428 9966 2.032549 CGGTTGCAAGTGAAGAAGACTG 60.033 50.000 0.00 0.00 0.00 3.51
4429 9967 2.213499 CGGTTGCAAGTGAAGAAGACT 58.787 47.619 0.00 0.00 0.00 3.24
4433 9971 2.907634 TGTACGGTTGCAAGTGAAGAA 58.092 42.857 0.00 0.00 0.00 2.52
4434 9972 2.605837 TGTACGGTTGCAAGTGAAGA 57.394 45.000 0.00 0.00 0.00 2.87
4435 9973 6.656314 TTATATGTACGGTTGCAAGTGAAG 57.344 37.500 0.00 0.00 0.00 3.02
4436 9974 7.618502 ATTTATATGTACGGTTGCAAGTGAA 57.381 32.000 0.00 0.00 0.00 3.18
4437 9975 8.896320 ATATTTATATGTACGGTTGCAAGTGA 57.104 30.769 0.00 0.00 0.00 3.41
4462 10000 8.773645 CAGGATCGCTACATCAAATTTGTATTA 58.226 33.333 17.47 6.64 0.00 0.98
4466 10004 4.943705 ACAGGATCGCTACATCAAATTTGT 59.056 37.500 17.47 2.27 0.00 2.83
4473 10011 2.654863 TGAGACAGGATCGCTACATCA 58.345 47.619 0.00 0.00 0.00 3.07
4482 10020 4.080863 ACCACCACTATTTGAGACAGGATC 60.081 45.833 0.00 0.00 0.00 3.36
4485 10023 3.703001 ACCACCACTATTTGAGACAGG 57.297 47.619 0.00 0.00 0.00 4.00
4486 10024 3.189287 GCAACCACCACTATTTGAGACAG 59.811 47.826 0.00 0.00 0.00 3.51
4487 10025 3.146066 GCAACCACCACTATTTGAGACA 58.854 45.455 0.00 0.00 0.00 3.41
4500 10038 3.128589 ACGTCATATTTGATGCAACCACC 59.871 43.478 5.39 0.00 41.74 4.61
4520 10059 1.864082 TGCAACTACATGTGACACACG 59.136 47.619 11.22 5.01 37.14 4.49
4524 10063 3.242576 CGTTTGTGCAACTACATGTGACA 60.243 43.478 9.11 0.00 38.04 3.58
4525 10064 3.242608 ACGTTTGTGCAACTACATGTGAC 60.243 43.478 9.11 0.00 38.04 3.67
4529 10068 3.544651 CTCACGTTTGTGCAACTACATG 58.455 45.455 0.00 0.00 46.01 3.21
4530 10069 2.032030 GCTCACGTTTGTGCAACTACAT 60.032 45.455 0.00 0.00 46.01 2.29
4535 10074 1.654137 CCGCTCACGTTTGTGCAAC 60.654 57.895 0.00 0.00 46.01 4.17
4542 10081 1.098712 TTTTCTGCCCGCTCACGTTT 61.099 50.000 0.00 0.00 37.70 3.60
4545 10084 3.339731 TTTTTCTGCCCGCTCACG 58.660 55.556 0.00 0.00 39.67 4.35
4584 10128 2.035530 TGTGCAACATGTGTGACTCA 57.964 45.000 0.00 0.00 45.67 3.41
4611 10155 2.363680 ACATGCAAAATTTGACCCGTCA 59.636 40.909 10.26 0.00 37.91 4.35
4614 10158 2.475864 CACACATGCAAAATTTGACCCG 59.524 45.455 10.26 0.00 0.00 5.28
4650 10194 2.644676 TCTACTAGTCGCATGAGCACT 58.355 47.619 0.00 1.84 42.27 4.40
4651 10195 3.422417 TTCTACTAGTCGCATGAGCAC 57.578 47.619 0.00 0.00 42.27 4.40
4652 10196 4.450082 TTTTCTACTAGTCGCATGAGCA 57.550 40.909 0.00 0.00 42.27 4.26
4655 10199 9.817809 ATTTAGATTTTTCTACTAGTCGCATGA 57.182 29.630 0.00 0.00 0.00 3.07
4681 10225 9.881649 TTGGTGCATATGCTTGATTTAATTTTA 57.118 25.926 27.13 0.00 42.66 1.52
4686 10231 6.528537 AGTTGGTGCATATGCTTGATTTAA 57.471 33.333 27.13 10.62 42.66 1.52
4714 10259 1.375908 CATGCCAGTGCGTACCTGT 60.376 57.895 0.00 0.00 41.78 4.00
4715 10260 1.079197 TCATGCCAGTGCGTACCTG 60.079 57.895 0.00 0.00 41.78 4.00
4717 10262 0.391130 TTCTCATGCCAGTGCGTACC 60.391 55.000 0.00 0.00 41.78 3.34
4723 10268 6.258230 TCTTTTTATGTTCTCATGCCAGTG 57.742 37.500 0.00 0.00 35.70 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.