Multiple sequence alignment - TraesCS7A01G130900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G130900 chr7A 100.000 3257 0 0 1 3257 84316904 84313648 0.000000e+00 6015.0
1 TraesCS7A01G130900 chr7A 87.227 595 58 6 2681 3257 216411845 216412439 0.000000e+00 662.0
2 TraesCS7A01G130900 chr7A 92.720 261 15 2 2239 2498 460989982 460990239 1.100000e-99 374.0
3 TraesCS7A01G130900 chr7A 85.519 366 31 13 2682 3039 460992364 460992715 2.390000e-96 363.0
4 TraesCS7A01G130900 chr7A 92.347 196 14 1 295 490 691432445 691432639 8.900000e-71 278.0
5 TraesCS7A01G130900 chr7D 90.207 1399 62 16 1 1362 82619181 82617821 0.000000e+00 1755.0
6 TraesCS7A01G130900 chr7D 89.628 511 49 4 1 507 579909285 579908775 0.000000e+00 647.0
7 TraesCS7A01G130900 chr7D 93.275 342 22 1 1783 2124 82616563 82616223 1.350000e-138 503.0
8 TraesCS7A01G130900 chr7D 85.630 341 40 6 890 1225 579908320 579907984 1.860000e-92 350.0
9 TraesCS7A01G130900 chr7D 91.837 196 15 1 295 490 599179105 599179299 4.140000e-69 272.0
10 TraesCS7A01G130900 chr7D 82.301 226 23 5 1 226 599178889 599179097 2.580000e-41 180.0
11 TraesCS7A01G130900 chr7B 90.656 1220 58 13 3 1169 31565071 31563855 0.000000e+00 1570.0
12 TraesCS7A01G130900 chr7B 93.052 403 20 2 1828 2223 31562508 31562107 1.680000e-162 582.0
13 TraesCS7A01G130900 chr7B 88.961 462 41 7 1244 1703 31562988 31562535 2.190000e-156 562.0
14 TraesCS7A01G130900 chr7B 84.538 595 53 15 2681 3257 145363861 145364434 1.320000e-153 553.0
15 TraesCS7A01G130900 chr7B 85.455 220 19 5 2681 2889 96533693 96533476 1.970000e-52 217.0
16 TraesCS7A01G130900 chr6B 84.478 1005 124 13 1244 2228 10904114 10905106 0.000000e+00 963.0
17 TraesCS7A01G130900 chr6B 84.478 1005 124 13 1244 2228 10935610 10934618 0.000000e+00 963.0
18 TraesCS7A01G130900 chr6B 87.989 358 32 4 67 415 32017388 32017743 2.340000e-111 412.0
19 TraesCS7A01G130900 chr6D 83.897 1006 125 14 1244 2228 15860154 15859165 0.000000e+00 926.0
20 TraesCS7A01G130900 chr6D 87.482 687 57 11 67 726 17884528 17885212 0.000000e+00 765.0
21 TraesCS7A01G130900 chr6D 95.556 180 6 2 2506 2683 37717445 37717624 1.480000e-73 287.0
22 TraesCS7A01G130900 chr6D 95.556 180 6 2 2506 2683 413008433 413008254 1.480000e-73 287.0
23 TraesCS7A01G130900 chr6D 89.720 214 11 1 2681 2883 409512464 409512251 2.490000e-66 263.0
24 TraesCS7A01G130900 chr3A 89.386 603 38 7 2681 3257 698724476 698723874 0.000000e+00 736.0
25 TraesCS7A01G130900 chr3A 88.889 603 41 7 2681 3257 20401688 20402290 0.000000e+00 719.0
26 TraesCS7A01G130900 chr3A 88.138 607 41 10 2681 3257 491217984 491218589 0.000000e+00 693.0
27 TraesCS7A01G130900 chr3A 92.359 301 21 2 2958 3257 638501304 638501005 8.350000e-116 427.0
28 TraesCS7A01G130900 chr3A 95.082 244 12 0 2245 2488 20404632 20404875 5.100000e-103 385.0
29 TraesCS7A01G130900 chr3A 82.243 214 26 4 2681 2883 180814517 180814729 1.200000e-39 174.0
30 TraesCS7A01G130900 chr6A 88.889 603 39 8 2681 3257 29225539 29226139 0.000000e+00 717.0
31 TraesCS7A01G130900 chr6A 88.372 602 44 7 2681 3256 558184455 558185056 0.000000e+00 701.0
32 TraesCS7A01G130900 chr6A 88.060 603 46 7 2681 3257 25675095 25674493 0.000000e+00 691.0
33 TraesCS7A01G130900 chr6A 88.067 595 42 7 2681 3257 507610530 507611113 0.000000e+00 678.0
34 TraesCS7A01G130900 chr6A 94.882 254 12 1 2241 2493 507608045 507608298 2.350000e-106 396.0
35 TraesCS7A01G130900 chr6A 93.307 254 17 0 2245 2498 492801428 492801681 3.070000e-100 375.0
36 TraesCS7A01G130900 chr6A 96.111 180 5 2 2506 2683 68948680 68948501 3.180000e-75 292.0
37 TraesCS7A01G130900 chr6A 96.111 180 5 2 2506 2683 184358517 184358696 3.180000e-75 292.0
38 TraesCS7A01G130900 chr5A 88.889 603 40 10 2681 3257 441511123 441510522 0.000000e+00 717.0
39 TraesCS7A01G130900 chr5A 88.723 603 42 9 2681 3257 511012485 511013087 0.000000e+00 713.0
40 TraesCS7A01G130900 chr5A 96.667 180 4 2 2506 2683 441511403 441511224 6.830000e-77 298.0
41 TraesCS7A01G130900 chr5A 96.667 180 4 2 2506 2683 511012205 511012384 6.830000e-77 298.0
42 TraesCS7A01G130900 chr5A 96.111 180 5 2 2506 2683 480328163 480328342 3.180000e-75 292.0
43 TraesCS7A01G130900 chr5A 88.208 212 14 2 2681 2881 39005103 39004892 3.250000e-60 243.0
44 TraesCS7A01G130900 chr4D 88.723 603 42 8 2681 3257 395352542 395351940 0.000000e+00 713.0
45 TraesCS7A01G130900 chr4D 88.557 603 41 9 2681 3257 395357997 395357397 0.000000e+00 706.0
46 TraesCS7A01G130900 chr4D 93.701 254 16 0 2245 2498 73332734 73332481 6.590000e-102 381.0
47 TraesCS7A01G130900 chr4D 89.848 197 18 2 295 490 485779471 485779276 5.390000e-63 252.0
48 TraesCS7A01G130900 chr4D 90.780 141 12 1 87 226 485779619 485779479 1.540000e-43 187.0
49 TraesCS7A01G130900 chr5D 88.060 603 46 9 2681 3257 236159818 236159216 0.000000e+00 691.0
50 TraesCS7A01G130900 chr5D 91.837 196 15 1 295 490 445813017 445812823 4.140000e-69 272.0
51 TraesCS7A01G130900 chr5D 82.301 226 23 5 1 226 445813233 445813025 2.580000e-41 180.0
52 TraesCS7A01G130900 chr2A 87.728 603 48 7 2681 3257 780747772 780747170 0.000000e+00 680.0
53 TraesCS7A01G130900 chr2A 93.385 257 15 2 2244 2498 752466690 752466946 2.370000e-101 379.0
54 TraesCS7A01G130900 chr2A 92.188 256 9 1 2681 2925 144320794 144320539 5.170000e-93 351.0
55 TraesCS7A01G130900 chr2A 87.546 273 27 2 1 272 733174771 733174505 3.160000e-80 309.0
56 TraesCS7A01G130900 chr2A 96.089 179 5 2 2507 2683 144334055 144333877 1.140000e-74 291.0
57 TraesCS7A01G130900 chr2A 96.089 179 5 2 2507 2683 144354945 144354767 1.140000e-74 291.0
58 TraesCS7A01G130900 chr2A 81.250 224 29 4 2681 2892 84109523 84109745 5.590000e-38 169.0
59 TraesCS7A01G130900 chr2A 76.744 172 31 7 760 929 412038262 412038098 1.610000e-13 87.9
60 TraesCS7A01G130900 chr1A 87.728 603 47 8 2681 3257 489592446 489593047 0.000000e+00 678.0
61 TraesCS7A01G130900 chr1A 80.851 94 16 2 760 852 588161481 588161389 4.510000e-09 73.1
62 TraesCS7A01G130900 chr4A 87.813 599 45 9 2681 3253 585067813 585067217 0.000000e+00 676.0
63 TraesCS7A01G130900 chr3D 87.396 603 49 11 2681 3257 32143116 32142515 0.000000e+00 667.0
64 TraesCS7A01G130900 chr3D 87.442 215 15 2 2681 2883 557788275 557788489 1.510000e-58 237.0
65 TraesCS7A01G130900 chr2D 89.587 509 42 5 1 507 598934550 598934051 1.270000e-178 636.0
66 TraesCS7A01G130900 chr2D 82.710 214 25 4 2681 2883 38794102 38794314 2.580000e-41 180.0
67 TraesCS7A01G130900 chr5B 86.218 595 63 7 2681 3257 702545966 702546559 7.670000e-176 627.0
68 TraesCS7A01G130900 chr5B 84.261 521 57 12 2688 3189 113797349 113796835 4.890000e-133 484.0
69 TraesCS7A01G130900 chr2B 88.386 508 50 6 1 507 728309108 728308609 1.290000e-168 603.0
70 TraesCS7A01G130900 chrUn 94.488 254 14 0 2245 2498 367933612 367933359 3.050000e-105 392.0
71 TraesCS7A01G130900 chr4B 94.488 254 14 0 2245 2498 7510884 7511137 3.050000e-105 392.0
72 TraesCS7A01G130900 chr4B 83.628 226 24 5 1 226 619976525 619976313 1.980000e-47 200.0
73 TraesCS7A01G130900 chr1B 93.436 259 12 1 2245 2498 566967161 566966903 2.370000e-101 379.0
74 TraesCS7A01G130900 chr1D 86.449 214 18 7 2681 2883 361311272 361311485 1.180000e-54 224.0
75 TraesCS7A01G130900 chr1D 83.099 213 25 4 2681 2882 32456934 32457146 2.000000e-42 183.0
76 TraesCS7A01G130900 chr3B 76.744 172 31 6 760 929 479877227 479877391 1.610000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G130900 chr7A 84313648 84316904 3256 True 6015.000000 6015 100.000000 1 3257 1 chr7A.!!$R1 3256
1 TraesCS7A01G130900 chr7A 216411845 216412439 594 False 662.000000 662 87.227000 2681 3257 1 chr7A.!!$F1 576
2 TraesCS7A01G130900 chr7A 460989982 460992715 2733 False 368.500000 374 89.119500 2239 3039 2 chr7A.!!$F3 800
3 TraesCS7A01G130900 chr7D 82616223 82619181 2958 True 1129.000000 1755 91.741000 1 2124 2 chr7D.!!$R1 2123
4 TraesCS7A01G130900 chr7D 579907984 579909285 1301 True 498.500000 647 87.629000 1 1225 2 chr7D.!!$R2 1224
5 TraesCS7A01G130900 chr7B 31562107 31565071 2964 True 904.666667 1570 90.889667 3 2223 3 chr7B.!!$R2 2220
6 TraesCS7A01G130900 chr7B 145363861 145364434 573 False 553.000000 553 84.538000 2681 3257 1 chr7B.!!$F1 576
7 TraesCS7A01G130900 chr6B 10904114 10905106 992 False 963.000000 963 84.478000 1244 2228 1 chr6B.!!$F1 984
8 TraesCS7A01G130900 chr6B 10934618 10935610 992 True 963.000000 963 84.478000 1244 2228 1 chr6B.!!$R1 984
9 TraesCS7A01G130900 chr6D 15859165 15860154 989 True 926.000000 926 83.897000 1244 2228 1 chr6D.!!$R1 984
10 TraesCS7A01G130900 chr6D 17884528 17885212 684 False 765.000000 765 87.482000 67 726 1 chr6D.!!$F1 659
11 TraesCS7A01G130900 chr3A 698723874 698724476 602 True 736.000000 736 89.386000 2681 3257 1 chr3A.!!$R2 576
12 TraesCS7A01G130900 chr3A 491217984 491218589 605 False 693.000000 693 88.138000 2681 3257 1 chr3A.!!$F2 576
13 TraesCS7A01G130900 chr3A 20401688 20404875 3187 False 552.000000 719 91.985500 2245 3257 2 chr3A.!!$F3 1012
14 TraesCS7A01G130900 chr6A 29225539 29226139 600 False 717.000000 717 88.889000 2681 3257 1 chr6A.!!$F1 576
15 TraesCS7A01G130900 chr6A 558184455 558185056 601 False 701.000000 701 88.372000 2681 3256 1 chr6A.!!$F4 575
16 TraesCS7A01G130900 chr6A 25674493 25675095 602 True 691.000000 691 88.060000 2681 3257 1 chr6A.!!$R1 576
17 TraesCS7A01G130900 chr6A 507608045 507611113 3068 False 537.000000 678 91.474500 2241 3257 2 chr6A.!!$F5 1016
18 TraesCS7A01G130900 chr5A 441510522 441511403 881 True 507.500000 717 92.778000 2506 3257 2 chr5A.!!$R2 751
19 TraesCS7A01G130900 chr5A 511012205 511013087 882 False 505.500000 713 92.695000 2506 3257 2 chr5A.!!$F2 751
20 TraesCS7A01G130900 chr4D 395351940 395352542 602 True 713.000000 713 88.723000 2681 3257 1 chr4D.!!$R2 576
21 TraesCS7A01G130900 chr4D 395357397 395357997 600 True 706.000000 706 88.557000 2681 3257 1 chr4D.!!$R3 576
22 TraesCS7A01G130900 chr5D 236159216 236159818 602 True 691.000000 691 88.060000 2681 3257 1 chr5D.!!$R1 576
23 TraesCS7A01G130900 chr2A 780747170 780747772 602 True 680.000000 680 87.728000 2681 3257 1 chr2A.!!$R6 576
24 TraesCS7A01G130900 chr1A 489592446 489593047 601 False 678.000000 678 87.728000 2681 3257 1 chr1A.!!$F1 576
25 TraesCS7A01G130900 chr4A 585067217 585067813 596 True 676.000000 676 87.813000 2681 3253 1 chr4A.!!$R1 572
26 TraesCS7A01G130900 chr3D 32142515 32143116 601 True 667.000000 667 87.396000 2681 3257 1 chr3D.!!$R1 576
27 TraesCS7A01G130900 chr5B 702545966 702546559 593 False 627.000000 627 86.218000 2681 3257 1 chr5B.!!$F1 576
28 TraesCS7A01G130900 chr5B 113796835 113797349 514 True 484.000000 484 84.261000 2688 3189 1 chr5B.!!$R1 501

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
710 797 2.091541 TCCTGGATTTTTAAGGCGCAG 58.908 47.619 10.83 0.0 0.0 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2348 4671 0.108138 CTTCTTCCACTAGCGGGGTG 60.108 60.0 0.0 0.0 34.78 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 7.367285 GCATACACAGACTTTGAAATTTGGTA 58.633 34.615 0.00 0.00 0.00 3.25
62 63 2.744202 ACAACTAATTTGCCAGCTCTCG 59.256 45.455 0.00 0.00 39.01 4.04
140 142 6.825213 GGATAATGTTGATGAGCCTATATGCA 59.175 38.462 2.72 0.00 0.00 3.96
269 273 5.734720 TGTCTCCAATTAGTGTCATCTTCC 58.265 41.667 0.00 0.00 0.00 3.46
313 346 5.620738 TGGTTGTGGGATTGATTTTTCAA 57.379 34.783 0.00 0.00 0.00 2.69
344 377 6.713762 TGTTCATCTGATTGGTGTTTCTTT 57.286 33.333 0.00 0.00 0.00 2.52
463 498 9.370930 TCCAGCTAATTTGATGATTAATTCCAT 57.629 29.630 6.72 0.00 0.00 3.41
573 653 6.030228 GGCTAATTTGATCACTGTTAACTGC 58.970 40.000 11.98 0.00 0.00 4.40
710 797 2.091541 TCCTGGATTTTTAAGGCGCAG 58.908 47.619 10.83 0.00 0.00 5.18
861 1067 9.206870 CTTAATGCACATTTCACATTAAACCTT 57.793 29.630 0.47 0.00 42.53 3.50
964 1245 4.518970 AGATTGCACGGTGATACAAACTTT 59.481 37.500 13.29 0.00 0.00 2.66
1010 1291 0.101399 CACCGGATCACCTCTTCTCG 59.899 60.000 9.46 0.00 0.00 4.04
1117 1401 7.430502 GCGAAATTATTCACTCAAAGAGAATGG 59.569 37.037 9.10 0.00 36.46 3.16
1204 2135 2.380064 TTTGGACAGCAGGGATGTTT 57.620 45.000 0.00 0.00 30.17 2.83
1234 2303 4.826274 ATCTATAATAGCCGCCACACAT 57.174 40.909 0.00 0.00 0.00 3.21
1413 3700 0.460987 CTCGATGGACAGGACAAGCC 60.461 60.000 0.00 0.00 0.00 4.35
1490 3777 1.839747 TACCCGTTGCTCCAGGTGT 60.840 57.895 0.00 0.00 33.70 4.16
1534 3821 0.960364 GGACGGCCACACACATGAAT 60.960 55.000 0.00 0.00 0.00 2.57
1601 3894 4.368003 CCAAGGGCAGGCATCATT 57.632 55.556 0.00 0.00 0.00 2.57
1607 3903 1.380246 GGCAGGCATCATTGGGACA 60.380 57.895 0.00 0.00 0.00 4.02
1679 3975 1.702182 TTTGAAGGCCATGCTGTTCA 58.298 45.000 5.01 1.38 32.68 3.18
1687 3983 1.135199 GCCATGCTGTTCAACATCCTG 60.135 52.381 0.00 0.00 0.00 3.86
1727 4023 1.021390 CCAAGATCACGGTGGAGTGC 61.021 60.000 8.50 0.00 41.61 4.40
1728 4024 0.320683 CAAGATCACGGTGGAGTGCA 60.321 55.000 8.50 0.00 41.61 4.57
1729 4025 0.036952 AAGATCACGGTGGAGTGCAG 60.037 55.000 8.50 0.00 41.61 4.41
1734 4050 3.625897 CGGTGGAGTGCAGACCCA 61.626 66.667 6.64 2.51 0.00 4.51
1791 4107 4.069232 CTCGCGCAGGACCAGGAA 62.069 66.667 8.75 0.00 0.00 3.36
2043 4366 2.093128 GCATTTCCTAGGGAAGACGGAA 60.093 50.000 8.87 0.00 43.06 4.30
2250 4573 6.817765 AAAAAGGAGTATCGAAATGCTGAA 57.182 33.333 0.00 0.00 34.37 3.02
2251 4574 6.817765 AAAAGGAGTATCGAAATGCTGAAA 57.182 33.333 0.00 0.00 34.37 2.69
2252 4575 7.396540 AAAAGGAGTATCGAAATGCTGAAAT 57.603 32.000 0.00 0.00 34.37 2.17
2253 4576 7.396540 AAAGGAGTATCGAAATGCTGAAATT 57.603 32.000 0.00 0.00 34.37 1.82
2254 4577 7.396540 AAGGAGTATCGAAATGCTGAAATTT 57.603 32.000 0.00 0.00 34.37 1.82
2255 4578 6.789262 AGGAGTATCGAAATGCTGAAATTTG 58.211 36.000 0.00 0.00 34.37 2.32
2256 4579 6.599244 AGGAGTATCGAAATGCTGAAATTTGA 59.401 34.615 0.00 0.00 34.37 2.69
2257 4580 6.909357 GGAGTATCGAAATGCTGAAATTTGAG 59.091 38.462 0.00 0.00 34.37 3.02
2258 4581 7.201644 GGAGTATCGAAATGCTGAAATTTGAGA 60.202 37.037 9.00 0.00 34.37 3.27
2259 4582 8.218338 AGTATCGAAATGCTGAAATTTGAGAT 57.782 30.769 9.00 0.00 32.67 2.75
2260 4583 8.127327 AGTATCGAAATGCTGAAATTTGAGATG 58.873 33.333 9.00 0.00 31.49 2.90
2261 4584 5.643664 TCGAAATGCTGAAATTTGAGATGG 58.356 37.500 9.00 0.00 29.89 3.51
2262 4585 4.802039 CGAAATGCTGAAATTTGAGATGGG 59.198 41.667 9.00 0.00 29.89 4.00
2263 4586 3.814005 ATGCTGAAATTTGAGATGGGC 57.186 42.857 9.00 0.00 0.00 5.36
2264 4587 2.811410 TGCTGAAATTTGAGATGGGCT 58.189 42.857 9.00 0.00 0.00 5.19
2265 4588 2.756760 TGCTGAAATTTGAGATGGGCTC 59.243 45.455 9.00 0.00 44.21 4.70
2266 4589 3.022406 GCTGAAATTTGAGATGGGCTCT 58.978 45.455 9.00 0.00 44.27 4.09
2267 4590 4.202441 GCTGAAATTTGAGATGGGCTCTA 58.798 43.478 9.00 0.00 44.27 2.43
2268 4591 4.275443 GCTGAAATTTGAGATGGGCTCTAG 59.725 45.833 9.00 0.00 44.27 2.43
2269 4592 4.785301 TGAAATTTGAGATGGGCTCTAGG 58.215 43.478 0.00 0.00 44.27 3.02
2270 4593 2.947127 ATTTGAGATGGGCTCTAGGC 57.053 50.000 0.00 0.00 44.27 3.93
2271 4594 1.885049 TTTGAGATGGGCTCTAGGCT 58.115 50.000 3.36 0.00 44.27 4.58
2272 4595 1.418334 TTGAGATGGGCTCTAGGCTC 58.582 55.000 3.36 0.34 44.27 4.70
2302 4625 7.834803 AGCAATTTCTGAAAAATCTCTAAGGG 58.165 34.615 6.95 0.00 0.00 3.95
2303 4626 6.533012 GCAATTTCTGAAAAATCTCTAAGGGC 59.467 38.462 6.95 0.00 0.00 5.19
2304 4627 6.782082 ATTTCTGAAAAATCTCTAAGGGCC 57.218 37.500 6.95 0.00 0.00 5.80
2305 4628 4.236527 TCTGAAAAATCTCTAAGGGCCC 57.763 45.455 16.46 16.46 0.00 5.80
2306 4629 3.591527 TCTGAAAAATCTCTAAGGGCCCA 59.408 43.478 27.56 2.12 0.00 5.36
2307 4630 4.230502 TCTGAAAAATCTCTAAGGGCCCAT 59.769 41.667 27.56 16.50 0.00 4.00
2308 4631 4.280819 TGAAAAATCTCTAAGGGCCCATG 58.719 43.478 27.56 13.67 0.00 3.66
2309 4632 4.264352 TGAAAAATCTCTAAGGGCCCATGT 60.264 41.667 27.56 11.59 0.00 3.21
2310 4633 3.303351 AAATCTCTAAGGGCCCATGTG 57.697 47.619 27.56 13.94 0.00 3.21
2311 4634 1.143813 ATCTCTAAGGGCCCATGTGG 58.856 55.000 27.56 11.04 37.09 4.17
2326 4649 5.902613 CCATGTGGGTTATATGGCATTAG 57.097 43.478 4.78 0.00 40.57 1.73
2327 4650 4.706476 CCATGTGGGTTATATGGCATTAGG 59.294 45.833 4.78 0.00 40.57 2.69
2328 4651 5.324409 CATGTGGGTTATATGGCATTAGGT 58.676 41.667 4.78 0.00 0.00 3.08
2329 4652 4.724399 TGTGGGTTATATGGCATTAGGTG 58.276 43.478 4.78 0.00 0.00 4.00
2330 4653 4.167113 TGTGGGTTATATGGCATTAGGTGT 59.833 41.667 4.78 0.00 0.00 4.16
2331 4654 5.369993 TGTGGGTTATATGGCATTAGGTGTA 59.630 40.000 4.78 0.00 0.00 2.90
2332 4655 5.938125 GTGGGTTATATGGCATTAGGTGTAG 59.062 44.000 4.78 0.00 0.00 2.74
2333 4656 5.609284 TGGGTTATATGGCATTAGGTGTAGT 59.391 40.000 4.78 0.00 0.00 2.73
2334 4657 5.938125 GGGTTATATGGCATTAGGTGTAGTG 59.062 44.000 4.78 0.00 0.00 2.74
2335 4658 6.239772 GGGTTATATGGCATTAGGTGTAGTGA 60.240 42.308 4.78 0.00 0.00 3.41
2336 4659 6.874134 GGTTATATGGCATTAGGTGTAGTGAG 59.126 42.308 4.78 0.00 0.00 3.51
2337 4660 7.256190 GGTTATATGGCATTAGGTGTAGTGAGA 60.256 40.741 4.78 0.00 0.00 3.27
2338 4661 6.747414 ATATGGCATTAGGTGTAGTGAGAA 57.253 37.500 4.78 0.00 0.00 2.87
2339 4662 4.471904 TGGCATTAGGTGTAGTGAGAAG 57.528 45.455 0.00 0.00 0.00 2.85
2340 4663 3.838317 TGGCATTAGGTGTAGTGAGAAGT 59.162 43.478 0.00 0.00 0.00 3.01
2341 4664 4.286032 TGGCATTAGGTGTAGTGAGAAGTT 59.714 41.667 0.00 0.00 0.00 2.66
2342 4665 5.221843 TGGCATTAGGTGTAGTGAGAAGTTT 60.222 40.000 0.00 0.00 0.00 2.66
2343 4666 6.014070 TGGCATTAGGTGTAGTGAGAAGTTTA 60.014 38.462 0.00 0.00 0.00 2.01
2344 4667 6.535508 GGCATTAGGTGTAGTGAGAAGTTTAG 59.464 42.308 0.00 0.00 0.00 1.85
2345 4668 7.097834 GCATTAGGTGTAGTGAGAAGTTTAGT 58.902 38.462 0.00 0.00 0.00 2.24
2346 4669 7.275999 GCATTAGGTGTAGTGAGAAGTTTAGTC 59.724 40.741 0.00 0.00 0.00 2.59
2347 4670 5.725325 AGGTGTAGTGAGAAGTTTAGTCC 57.275 43.478 0.00 0.00 0.00 3.85
2348 4671 4.527427 AGGTGTAGTGAGAAGTTTAGTCCC 59.473 45.833 0.00 0.00 0.00 4.46
2349 4672 4.282703 GGTGTAGTGAGAAGTTTAGTCCCA 59.717 45.833 0.00 0.00 0.00 4.37
2350 4673 5.228665 GTGTAGTGAGAAGTTTAGTCCCAC 58.771 45.833 0.00 0.00 0.00 4.61
2351 4674 4.282703 TGTAGTGAGAAGTTTAGTCCCACC 59.717 45.833 0.00 0.00 0.00 4.61
2352 4675 2.638363 AGTGAGAAGTTTAGTCCCACCC 59.362 50.000 0.00 0.00 0.00 4.61
2353 4676 1.982958 TGAGAAGTTTAGTCCCACCCC 59.017 52.381 0.00 0.00 0.00 4.95
2354 4677 0.981943 AGAAGTTTAGTCCCACCCCG 59.018 55.000 0.00 0.00 0.00 5.73
2355 4678 0.675837 GAAGTTTAGTCCCACCCCGC 60.676 60.000 0.00 0.00 0.00 6.13
2356 4679 1.131928 AAGTTTAGTCCCACCCCGCT 61.132 55.000 0.00 0.00 0.00 5.52
2357 4680 0.252375 AGTTTAGTCCCACCCCGCTA 60.252 55.000 0.00 0.00 0.00 4.26
2358 4681 0.177373 GTTTAGTCCCACCCCGCTAG 59.823 60.000 0.00 0.00 0.00 3.42
2359 4682 0.252375 TTTAGTCCCACCCCGCTAGT 60.252 55.000 0.00 0.00 0.00 2.57
2360 4683 0.974010 TTAGTCCCACCCCGCTAGTG 60.974 60.000 0.00 0.00 34.91 2.74
2365 4688 3.708210 CACCCCGCTAGTGGAAGA 58.292 61.111 24.31 0.00 0.00 2.87
2366 4689 1.980052 CACCCCGCTAGTGGAAGAA 59.020 57.895 24.31 0.00 0.00 2.52
2367 4690 0.108138 CACCCCGCTAGTGGAAGAAG 60.108 60.000 24.31 6.23 0.00 2.85
2368 4691 0.252103 ACCCCGCTAGTGGAAGAAGA 60.252 55.000 24.31 0.00 0.00 2.87
2369 4692 0.461961 CCCCGCTAGTGGAAGAAGAG 59.538 60.000 24.31 4.74 0.00 2.85
2370 4693 1.187087 CCCGCTAGTGGAAGAAGAGT 58.813 55.000 24.31 0.00 0.00 3.24
2371 4694 1.550976 CCCGCTAGTGGAAGAAGAGTT 59.449 52.381 24.31 0.00 0.00 3.01
2372 4695 2.611518 CCGCTAGTGGAAGAAGAGTTG 58.388 52.381 17.96 0.00 0.00 3.16
2373 4696 2.231478 CCGCTAGTGGAAGAAGAGTTGA 59.769 50.000 17.96 0.00 0.00 3.18
2374 4697 3.306088 CCGCTAGTGGAAGAAGAGTTGAA 60.306 47.826 17.96 0.00 0.00 2.69
2375 4698 3.923461 CGCTAGTGGAAGAAGAGTTGAAG 59.077 47.826 0.00 0.00 0.00 3.02
2376 4699 4.559704 CGCTAGTGGAAGAAGAGTTGAAGT 60.560 45.833 0.00 0.00 0.00 3.01
2377 4700 4.688413 GCTAGTGGAAGAAGAGTTGAAGTG 59.312 45.833 0.00 0.00 0.00 3.16
2378 4701 4.078639 AGTGGAAGAAGAGTTGAAGTGG 57.921 45.455 0.00 0.00 0.00 4.00
2379 4702 3.456277 AGTGGAAGAAGAGTTGAAGTGGT 59.544 43.478 0.00 0.00 0.00 4.16
2380 4703 4.080299 AGTGGAAGAAGAGTTGAAGTGGTT 60.080 41.667 0.00 0.00 0.00 3.67
2381 4704 4.640647 GTGGAAGAAGAGTTGAAGTGGTTT 59.359 41.667 0.00 0.00 0.00 3.27
2382 4705 5.820947 GTGGAAGAAGAGTTGAAGTGGTTTA 59.179 40.000 0.00 0.00 0.00 2.01
2383 4706 6.486993 GTGGAAGAAGAGTTGAAGTGGTTTAT 59.513 38.462 0.00 0.00 0.00 1.40
2384 4707 7.660208 GTGGAAGAAGAGTTGAAGTGGTTTATA 59.340 37.037 0.00 0.00 0.00 0.98
2385 4708 8.215050 TGGAAGAAGAGTTGAAGTGGTTTATAA 58.785 33.333 0.00 0.00 0.00 0.98
2386 4709 8.722394 GGAAGAAGAGTTGAAGTGGTTTATAAG 58.278 37.037 0.00 0.00 0.00 1.73
2387 4710 8.622948 AAGAAGAGTTGAAGTGGTTTATAAGG 57.377 34.615 0.00 0.00 0.00 2.69
2388 4711 7.168905 AGAAGAGTTGAAGTGGTTTATAAGGG 58.831 38.462 0.00 0.00 0.00 3.95
2389 4712 6.449830 AGAGTTGAAGTGGTTTATAAGGGT 57.550 37.500 0.00 0.00 0.00 4.34
2390 4713 6.849151 AGAGTTGAAGTGGTTTATAAGGGTT 58.151 36.000 0.00 0.00 0.00 4.11
2391 4714 7.295340 AGAGTTGAAGTGGTTTATAAGGGTTT 58.705 34.615 0.00 0.00 0.00 3.27
2392 4715 7.447545 AGAGTTGAAGTGGTTTATAAGGGTTTC 59.552 37.037 0.00 0.00 0.00 2.78
2393 4716 7.295340 AGTTGAAGTGGTTTATAAGGGTTTCT 58.705 34.615 0.00 0.00 0.00 2.52
2394 4717 7.447545 AGTTGAAGTGGTTTATAAGGGTTTCTC 59.552 37.037 0.00 0.00 0.00 2.87
2395 4718 7.086685 TGAAGTGGTTTATAAGGGTTTCTCT 57.913 36.000 0.00 0.00 0.00 3.10
2396 4719 7.523415 TGAAGTGGTTTATAAGGGTTTCTCTT 58.477 34.615 0.00 0.00 0.00 2.85
2397 4720 8.002459 TGAAGTGGTTTATAAGGGTTTCTCTTT 58.998 33.333 0.00 0.00 0.00 2.52
2398 4721 8.777578 AAGTGGTTTATAAGGGTTTCTCTTTT 57.222 30.769 0.00 0.00 0.00 2.27
2399 4722 9.871175 AAGTGGTTTATAAGGGTTTCTCTTTTA 57.129 29.630 0.00 0.00 0.00 1.52
2400 4723 9.293404 AGTGGTTTATAAGGGTTTCTCTTTTAC 57.707 33.333 0.00 0.00 0.00 2.01
2401 4724 9.070179 GTGGTTTATAAGGGTTTCTCTTTTACA 57.930 33.333 0.00 0.00 0.00 2.41
2402 4725 9.816787 TGGTTTATAAGGGTTTCTCTTTTACAT 57.183 29.630 0.00 0.00 0.00 2.29
2404 4727 9.569167 GTTTATAAGGGTTTCTCTTTTACATGC 57.431 33.333 0.00 0.00 0.00 4.06
2405 4728 9.528489 TTTATAAGGGTTTCTCTTTTACATGCT 57.472 29.630 0.00 0.00 0.00 3.79
2408 4731 9.700831 ATAAGGGTTTCTCTTTTACATGCTATT 57.299 29.630 0.00 0.00 0.00 1.73
2409 4732 7.396540 AGGGTTTCTCTTTTACATGCTATTG 57.603 36.000 0.00 0.00 0.00 1.90
2410 4733 6.378280 AGGGTTTCTCTTTTACATGCTATTGG 59.622 38.462 0.00 0.00 0.00 3.16
2411 4734 6.377146 GGGTTTCTCTTTTACATGCTATTGGA 59.623 38.462 0.00 0.00 0.00 3.53
2412 4735 7.415653 GGGTTTCTCTTTTACATGCTATTGGAG 60.416 40.741 0.00 0.00 0.00 3.86
2427 4750 6.219417 CTATTGGAGCTTGAGAAGAGAAGA 57.781 41.667 0.00 0.00 0.00 2.87
2428 4751 4.533919 TTGGAGCTTGAGAAGAGAAGAG 57.466 45.455 0.00 0.00 0.00 2.85
2429 4752 2.830923 TGGAGCTTGAGAAGAGAAGAGG 59.169 50.000 0.00 0.00 0.00 3.69
2430 4753 2.418609 GGAGCTTGAGAAGAGAAGAGGC 60.419 54.545 0.00 0.00 0.00 4.70
2431 4754 1.554617 AGCTTGAGAAGAGAAGAGGCC 59.445 52.381 0.00 0.00 0.00 5.19
2432 4755 1.406751 GCTTGAGAAGAGAAGAGGCCC 60.407 57.143 0.00 0.00 0.00 5.80
2433 4756 2.187100 CTTGAGAAGAGAAGAGGCCCT 58.813 52.381 0.00 0.00 0.00 5.19
2434 4757 2.334006 TGAGAAGAGAAGAGGCCCTT 57.666 50.000 0.00 1.90 37.93 3.95
2435 4758 1.905215 TGAGAAGAGAAGAGGCCCTTG 59.095 52.381 10.77 0.00 34.68 3.61
2436 4759 0.617935 AGAAGAGAAGAGGCCCTTGC 59.382 55.000 10.77 3.96 34.68 4.01
2437 4760 0.742635 GAAGAGAAGAGGCCCTTGCG 60.743 60.000 10.77 0.00 38.85 4.85
2438 4761 2.811542 AAGAGAAGAGGCCCTTGCGC 62.812 60.000 10.77 0.00 38.85 6.09
2439 4762 3.612247 GAGAAGAGGCCCTTGCGCA 62.612 63.158 5.66 5.66 38.85 6.09
2440 4763 3.435186 GAAGAGGCCCTTGCGCAC 61.435 66.667 11.12 0.00 38.85 5.34
2441 4764 3.909086 GAAGAGGCCCTTGCGCACT 62.909 63.158 11.12 2.43 38.85 4.40
2442 4765 3.909086 AAGAGGCCCTTGCGCACTC 62.909 63.158 11.12 13.70 38.85 3.51
2447 4770 3.710722 CCCTTGCGCACTCCTCCT 61.711 66.667 11.12 0.00 0.00 3.69
2448 4771 2.125350 CCTTGCGCACTCCTCCTC 60.125 66.667 11.12 0.00 0.00 3.71
2449 4772 2.125350 CTTGCGCACTCCTCCTCC 60.125 66.667 11.12 0.00 0.00 4.30
2450 4773 2.922503 TTGCGCACTCCTCCTCCA 60.923 61.111 11.12 0.00 0.00 3.86
2451 4774 3.240134 TTGCGCACTCCTCCTCCAC 62.240 63.158 11.12 0.00 0.00 4.02
2452 4775 4.459089 GCGCACTCCTCCTCCACC 62.459 72.222 0.30 0.00 0.00 4.61
2453 4776 4.135153 CGCACTCCTCCTCCACCG 62.135 72.222 0.00 0.00 0.00 4.94
2454 4777 4.459089 GCACTCCTCCTCCACCGC 62.459 72.222 0.00 0.00 0.00 5.68
2455 4778 3.775654 CACTCCTCCTCCACCGCC 61.776 72.222 0.00 0.00 0.00 6.13
2504 4827 4.388499 GCCGCGGGTTGAGAAGGA 62.388 66.667 29.38 0.00 0.00 3.36
2509 4832 2.434359 GGGTTGAGAAGGACGCCG 60.434 66.667 0.00 0.00 0.00 6.46
2516 4839 2.168666 GAGAAGGACGCCGTTCCCTT 62.169 60.000 9.72 9.72 42.53 3.95
2520 4843 2.975799 GACGCCGTTCCCTTGCAA 60.976 61.111 0.00 0.00 0.00 4.08
2923 5362 1.343069 GAGGACGCCTCCCTATTCAT 58.657 55.000 13.12 0.00 44.36 2.57
2925 5364 1.048601 GGACGCCTCCCTATTCATCA 58.951 55.000 0.00 0.00 0.00 3.07
2927 5366 2.613977 GGACGCCTCCCTATTCATCATG 60.614 54.545 0.00 0.00 0.00 3.07
2928 5367 2.300152 GACGCCTCCCTATTCATCATGA 59.700 50.000 0.00 0.00 0.00 3.07
2929 5368 2.301296 ACGCCTCCCTATTCATCATGAG 59.699 50.000 0.09 0.00 0.00 2.90
2930 5369 2.564504 CGCCTCCCTATTCATCATGAGA 59.435 50.000 0.09 0.00 0.00 3.27
2931 5370 3.368220 CGCCTCCCTATTCATCATGAGAG 60.368 52.174 0.09 0.00 0.00 3.20
2932 5371 3.055240 GCCTCCCTATTCATCATGAGAGG 60.055 52.174 13.37 13.37 37.08 3.69
2935 5374 4.819610 TCCCTATTCATCATGAGAGGACA 58.180 43.478 16.16 3.33 34.83 4.02
2937 5376 4.262808 CCCTATTCATCATGAGAGGACACC 60.263 50.000 16.16 0.00 34.83 4.16
2938 5377 4.592351 CCTATTCATCATGAGAGGACACCT 59.408 45.833 10.90 0.00 34.83 4.00
2949 5388 1.763545 GAGGACACCTCCCTATTCACC 59.236 57.143 6.54 0.00 44.36 4.02
2950 5389 0.837940 GGACACCTCCCTATTCACCC 59.162 60.000 0.00 0.00 0.00 4.61
2951 5390 0.837940 GACACCTCCCTATTCACCCC 59.162 60.000 0.00 0.00 0.00 4.95
2953 5392 0.839946 CACCTCCCTATTCACCCCAG 59.160 60.000 0.00 0.00 0.00 4.45
2954 5393 0.421904 ACCTCCCTATTCACCCCAGT 59.578 55.000 0.00 0.00 0.00 4.00
2956 5395 2.046729 ACCTCCCTATTCACCCCAGTTA 59.953 50.000 0.00 0.00 0.00 2.24
3139 5606 1.330655 TTGGGGCTGTTTGGCGAAAA 61.331 50.000 0.00 0.00 42.84 2.29
3155 5622 2.355756 CGAAAATCAATGTGCCGATCCT 59.644 45.455 0.00 0.00 0.00 3.24
3213 5680 4.214971 TGCGTTAATTTGGGTTACGCTAAA 59.785 37.500 17.10 0.96 44.14 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 8.649841 TGTAAGCGTCAACACAGTAATAAATAC 58.350 33.333 0.00 0.00 34.52 1.89
140 142 4.534103 AGCAACAATTCCTAACCTCTCTCT 59.466 41.667 0.00 0.00 0.00 3.10
182 185 6.267928 AGCTTCTAGTTCAGAACCTTCAACTA 59.732 38.462 9.85 0.00 38.39 2.24
269 273 6.153340 ACCAACAAACCAGAATCATATTCAGG 59.847 38.462 8.94 8.94 0.00 3.86
313 346 6.266103 ACACCAATCAGATGAACATTCACTTT 59.734 34.615 0.00 0.00 40.49 2.66
326 359 5.711976 CCCACTAAAGAAACACCAATCAGAT 59.288 40.000 0.00 0.00 0.00 2.90
344 377 3.636018 TCCATGATCCAGATCCCACTA 57.364 47.619 5.22 0.00 37.02 2.74
463 498 7.047891 ACTTGAGTTGAAAGTGTACAATCAGA 58.952 34.615 0.00 0.00 36.52 3.27
573 653 2.800544 AGATTCCGTAATCCGCATTTCG 59.199 45.455 0.00 0.00 42.20 3.46
989 1270 1.153349 GAAGAGGTGATCCGGTGGC 60.153 63.158 0.00 0.00 39.05 5.01
1117 1401 6.696441 AAAGATGAGAGATTCAATCTTGGC 57.304 37.500 0.16 0.00 40.38 4.52
1204 2135 8.248945 GTGGCGGCTATTATAGATTTTCTACTA 58.751 37.037 11.43 0.00 30.79 1.82
1361 2438 2.742710 TTCGTGAGCAGGTCGAACCG 62.743 60.000 0.00 0.00 44.90 4.44
1362 2439 1.006571 TTCGTGAGCAGGTCGAACC 60.007 57.895 0.00 0.00 38.38 3.62
1363 2440 4.647654 TTCGTGAGCAGGTCGAAC 57.352 55.556 0.00 0.00 38.38 3.95
1365 2442 1.007734 GTGTTCGTGAGCAGGTCGA 60.008 57.895 0.00 0.00 0.00 4.20
1366 2443 2.365068 CGTGTTCGTGAGCAGGTCG 61.365 63.158 0.00 0.00 0.00 4.79
1368 2445 2.661866 GCGTGTTCGTGAGCAGGT 60.662 61.111 7.94 0.00 39.49 4.00
1413 3700 1.000486 TCCTCCAGAAGGTCCCTCG 60.000 63.158 0.00 0.00 46.32 4.63
1490 3777 3.185203 AAGGCCCTGCAGGTCCAA 61.185 61.111 33.36 0.00 43.64 3.53
1512 3799 1.074775 ATGTGTGTGGCCGTCCAAT 59.925 52.632 0.00 0.00 45.53 3.16
1534 3821 3.820595 CAGCAGATGGAAGACGTGA 57.179 52.632 0.00 0.00 0.00 4.35
1584 3877 1.682451 CCAATGATGCCTGCCCTTGG 61.682 60.000 0.00 0.00 0.00 3.61
1585 3878 1.682451 CCCAATGATGCCTGCCCTTG 61.682 60.000 0.00 0.00 0.00 3.61
1586 3879 1.382146 CCCAATGATGCCTGCCCTT 60.382 57.895 0.00 0.00 0.00 3.95
1593 3886 1.325355 CAGGATGTCCCAATGATGCC 58.675 55.000 0.00 0.00 37.41 4.40
1601 3894 2.954684 GCGTGTCCAGGATGTCCCA 61.955 63.158 0.00 0.00 37.41 4.37
1607 3903 2.267006 CAGCAGCGTGTCCAGGAT 59.733 61.111 0.00 0.00 0.00 3.24
1727 4023 2.124983 CCATCACGCCTGGGTCTG 60.125 66.667 0.00 0.00 0.00 3.51
1728 4024 4.101448 GCCATCACGCCTGGGTCT 62.101 66.667 0.00 0.00 34.16 3.85
1750 4066 2.963854 CTTGATCTCGGCGCGCAT 60.964 61.111 34.42 18.17 0.00 4.73
1791 4107 3.181471 CGTCTGCCTCTGTTATCATCCTT 60.181 47.826 0.00 0.00 0.00 3.36
1937 4260 1.064758 AGATTATGGTTGCGCCCTTGA 60.065 47.619 4.18 0.00 36.04 3.02
1999 4322 2.989639 CATGAACTCCTCGGGCCA 59.010 61.111 4.39 0.00 0.00 5.36
2024 4347 3.451540 GAGTTCCGTCTTCCCTAGGAAAT 59.548 47.826 11.48 0.00 43.44 2.17
2059 4382 3.519913 AGTGGGATAAACTTGACCTCCTC 59.480 47.826 0.00 0.00 0.00 3.71
2208 4531 2.225382 TTGGATACCTCTCGGTCACA 57.775 50.000 0.00 0.00 44.21 3.58
2228 4551 6.817765 TTTCAGCATTTCGATACTCCTTTT 57.182 33.333 0.00 0.00 0.00 2.27
2229 4552 7.396540 AATTTCAGCATTTCGATACTCCTTT 57.603 32.000 0.00 0.00 0.00 3.11
2230 4553 7.121168 TCAAATTTCAGCATTTCGATACTCCTT 59.879 33.333 0.00 0.00 0.00 3.36
2231 4554 6.599244 TCAAATTTCAGCATTTCGATACTCCT 59.401 34.615 0.00 0.00 0.00 3.69
2232 4555 6.785191 TCAAATTTCAGCATTTCGATACTCC 58.215 36.000 0.00 0.00 0.00 3.85
2233 4556 7.688372 TCTCAAATTTCAGCATTTCGATACTC 58.312 34.615 0.00 0.00 0.00 2.59
2234 4557 7.615582 TCTCAAATTTCAGCATTTCGATACT 57.384 32.000 0.00 0.00 0.00 2.12
2235 4558 7.377928 CCATCTCAAATTTCAGCATTTCGATAC 59.622 37.037 0.00 0.00 0.00 2.24
2236 4559 7.420002 CCATCTCAAATTTCAGCATTTCGATA 58.580 34.615 0.00 0.00 0.00 2.92
2237 4560 6.270815 CCATCTCAAATTTCAGCATTTCGAT 58.729 36.000 0.00 0.00 0.00 3.59
2238 4561 5.393352 CCCATCTCAAATTTCAGCATTTCGA 60.393 40.000 0.00 0.00 0.00 3.71
2239 4562 4.802039 CCCATCTCAAATTTCAGCATTTCG 59.198 41.667 0.00 0.00 0.00 3.46
2240 4563 4.569564 GCCCATCTCAAATTTCAGCATTTC 59.430 41.667 0.00 0.00 0.00 2.17
2241 4564 4.224370 AGCCCATCTCAAATTTCAGCATTT 59.776 37.500 0.00 0.00 0.00 2.32
2242 4565 3.773119 AGCCCATCTCAAATTTCAGCATT 59.227 39.130 0.00 0.00 0.00 3.56
2243 4566 3.371965 AGCCCATCTCAAATTTCAGCAT 58.628 40.909 0.00 0.00 0.00 3.79
2244 4567 2.756760 GAGCCCATCTCAAATTTCAGCA 59.243 45.455 0.00 0.00 41.51 4.41
2245 4568 3.022406 AGAGCCCATCTCAAATTTCAGC 58.978 45.455 0.00 0.00 44.35 4.26
2246 4569 4.820716 CCTAGAGCCCATCTCAAATTTCAG 59.179 45.833 0.00 0.00 44.35 3.02
2247 4570 4.785301 CCTAGAGCCCATCTCAAATTTCA 58.215 43.478 0.00 0.00 44.35 2.69
2248 4571 3.567585 GCCTAGAGCCCATCTCAAATTTC 59.432 47.826 0.00 0.00 44.35 2.17
2249 4572 3.203934 AGCCTAGAGCCCATCTCAAATTT 59.796 43.478 0.00 0.00 45.47 1.82
2250 4573 2.782341 AGCCTAGAGCCCATCTCAAATT 59.218 45.455 0.00 0.00 45.47 1.82
2251 4574 2.371510 GAGCCTAGAGCCCATCTCAAAT 59.628 50.000 0.00 0.00 45.47 2.32
2252 4575 1.765314 GAGCCTAGAGCCCATCTCAAA 59.235 52.381 0.00 0.00 45.47 2.69
2253 4576 1.343377 TGAGCCTAGAGCCCATCTCAA 60.343 52.381 0.00 0.00 45.47 3.02
2254 4577 0.262876 TGAGCCTAGAGCCCATCTCA 59.737 55.000 0.00 0.00 45.47 3.27
2255 4578 1.643310 ATGAGCCTAGAGCCCATCTC 58.357 55.000 0.00 0.00 34.23 2.75
2256 4579 3.488355 ATATGAGCCTAGAGCCCATCT 57.512 47.619 4.01 0.00 39.51 2.90
2257 4580 3.069443 GCTATATGAGCCTAGAGCCCATC 59.931 52.174 4.01 0.00 46.41 3.51
2258 4581 3.037549 GCTATATGAGCCTAGAGCCCAT 58.962 50.000 5.73 5.73 46.41 4.00
2259 4582 2.461695 GCTATATGAGCCTAGAGCCCA 58.538 52.381 0.00 0.00 46.41 5.36
2276 4599 8.960591 CCCTTAGAGATTTTTCAGAAATTGCTA 58.039 33.333 0.00 0.00 0.00 3.49
2277 4600 7.578380 GCCCTTAGAGATTTTTCAGAAATTGCT 60.578 37.037 0.00 0.00 0.00 3.91
2278 4601 6.533012 GCCCTTAGAGATTTTTCAGAAATTGC 59.467 38.462 0.00 0.00 0.00 3.56
2279 4602 7.038048 GGCCCTTAGAGATTTTTCAGAAATTG 58.962 38.462 0.00 0.00 0.00 2.32
2280 4603 6.155221 GGGCCCTTAGAGATTTTTCAGAAATT 59.845 38.462 17.04 0.00 0.00 1.82
2281 4604 5.658634 GGGCCCTTAGAGATTTTTCAGAAAT 59.341 40.000 17.04 0.00 0.00 2.17
2282 4605 5.016831 GGGCCCTTAGAGATTTTTCAGAAA 58.983 41.667 17.04 0.00 0.00 2.52
2283 4606 4.044065 TGGGCCCTTAGAGATTTTTCAGAA 59.956 41.667 25.70 0.00 0.00 3.02
2284 4607 3.591527 TGGGCCCTTAGAGATTTTTCAGA 59.408 43.478 25.70 0.00 0.00 3.27
2285 4608 3.968265 TGGGCCCTTAGAGATTTTTCAG 58.032 45.455 25.70 0.00 0.00 3.02
2286 4609 4.264352 ACATGGGCCCTTAGAGATTTTTCA 60.264 41.667 25.70 0.00 0.00 2.69
2287 4610 4.098501 CACATGGGCCCTTAGAGATTTTTC 59.901 45.833 25.70 0.00 0.00 2.29
2288 4611 4.026052 CACATGGGCCCTTAGAGATTTTT 58.974 43.478 25.70 0.00 0.00 1.94
2289 4612 3.628257 CCACATGGGCCCTTAGAGATTTT 60.628 47.826 25.70 0.00 0.00 1.82
2290 4613 2.091665 CCACATGGGCCCTTAGAGATTT 60.092 50.000 25.70 0.00 0.00 2.17
2291 4614 1.496429 CCACATGGGCCCTTAGAGATT 59.504 52.381 25.70 0.00 0.00 2.40
2292 4615 1.143813 CCACATGGGCCCTTAGAGAT 58.856 55.000 25.70 3.22 0.00 2.75
2293 4616 2.620234 CCACATGGGCCCTTAGAGA 58.380 57.895 25.70 0.07 0.00 3.10
2304 4627 4.706476 CCTAATGCCATATAACCCACATGG 59.294 45.833 0.00 0.00 41.85 3.66
2305 4628 5.183713 CACCTAATGCCATATAACCCACATG 59.816 44.000 0.00 0.00 0.00 3.21
2306 4629 5.162991 ACACCTAATGCCATATAACCCACAT 60.163 40.000 0.00 0.00 0.00 3.21
2307 4630 4.167113 ACACCTAATGCCATATAACCCACA 59.833 41.667 0.00 0.00 0.00 4.17
2308 4631 4.725490 ACACCTAATGCCATATAACCCAC 58.275 43.478 0.00 0.00 0.00 4.61
2309 4632 5.609284 ACTACACCTAATGCCATATAACCCA 59.391 40.000 0.00 0.00 0.00 4.51
2310 4633 5.938125 CACTACACCTAATGCCATATAACCC 59.062 44.000 0.00 0.00 0.00 4.11
2311 4634 6.765403 TCACTACACCTAATGCCATATAACC 58.235 40.000 0.00 0.00 0.00 2.85
2312 4635 7.667557 TCTCACTACACCTAATGCCATATAAC 58.332 38.462 0.00 0.00 0.00 1.89
2313 4636 7.849322 TCTCACTACACCTAATGCCATATAA 57.151 36.000 0.00 0.00 0.00 0.98
2314 4637 7.509318 ACTTCTCACTACACCTAATGCCATATA 59.491 37.037 0.00 0.00 0.00 0.86
2315 4638 6.327626 ACTTCTCACTACACCTAATGCCATAT 59.672 38.462 0.00 0.00 0.00 1.78
2316 4639 5.661312 ACTTCTCACTACACCTAATGCCATA 59.339 40.000 0.00 0.00 0.00 2.74
2317 4640 4.471386 ACTTCTCACTACACCTAATGCCAT 59.529 41.667 0.00 0.00 0.00 4.40
2318 4641 3.838317 ACTTCTCACTACACCTAATGCCA 59.162 43.478 0.00 0.00 0.00 4.92
2319 4642 4.473477 ACTTCTCACTACACCTAATGCC 57.527 45.455 0.00 0.00 0.00 4.40
2320 4643 7.097834 ACTAAACTTCTCACTACACCTAATGC 58.902 38.462 0.00 0.00 0.00 3.56
2321 4644 7.760340 GGACTAAACTTCTCACTACACCTAATG 59.240 40.741 0.00 0.00 0.00 1.90
2322 4645 7.093421 GGGACTAAACTTCTCACTACACCTAAT 60.093 40.741 0.00 0.00 0.00 1.73
2323 4646 6.210185 GGGACTAAACTTCTCACTACACCTAA 59.790 42.308 0.00 0.00 0.00 2.69
2324 4647 5.713861 GGGACTAAACTTCTCACTACACCTA 59.286 44.000 0.00 0.00 0.00 3.08
2325 4648 4.527427 GGGACTAAACTTCTCACTACACCT 59.473 45.833 0.00 0.00 0.00 4.00
2326 4649 4.282703 TGGGACTAAACTTCTCACTACACC 59.717 45.833 0.00 0.00 0.00 4.16
2327 4650 5.228665 GTGGGACTAAACTTCTCACTACAC 58.771 45.833 0.00 0.00 40.75 2.90
2328 4651 4.282703 GGTGGGACTAAACTTCTCACTACA 59.717 45.833 2.56 0.00 43.10 2.74
2329 4652 4.322574 GGGTGGGACTAAACTTCTCACTAC 60.323 50.000 2.56 0.00 43.10 2.73
2330 4653 3.836562 GGGTGGGACTAAACTTCTCACTA 59.163 47.826 2.56 0.00 43.10 2.74
2331 4654 2.638363 GGGTGGGACTAAACTTCTCACT 59.362 50.000 2.56 0.00 43.10 3.41
2332 4655 2.290134 GGGGTGGGACTAAACTTCTCAC 60.290 54.545 0.00 0.00 42.85 3.51
2333 4656 1.982958 GGGGTGGGACTAAACTTCTCA 59.017 52.381 0.00 0.00 0.00 3.27
2334 4657 1.066358 CGGGGTGGGACTAAACTTCTC 60.066 57.143 0.00 0.00 0.00 2.87
2335 4658 0.981943 CGGGGTGGGACTAAACTTCT 59.018 55.000 0.00 0.00 0.00 2.85
2336 4659 0.675837 GCGGGGTGGGACTAAACTTC 60.676 60.000 0.00 0.00 0.00 3.01
2337 4660 1.131928 AGCGGGGTGGGACTAAACTT 61.132 55.000 0.00 0.00 0.00 2.66
2338 4661 0.252375 TAGCGGGGTGGGACTAAACT 60.252 55.000 0.00 0.00 0.00 2.66
2339 4662 0.177373 CTAGCGGGGTGGGACTAAAC 59.823 60.000 0.00 0.00 0.00 2.01
2340 4663 0.252375 ACTAGCGGGGTGGGACTAAA 60.252 55.000 0.00 0.00 0.00 1.85
2341 4664 0.974010 CACTAGCGGGGTGGGACTAA 60.974 60.000 0.00 0.00 0.00 2.24
2342 4665 1.380785 CACTAGCGGGGTGGGACTA 60.381 63.158 0.00 0.00 0.00 2.59
2343 4666 2.683933 CACTAGCGGGGTGGGACT 60.684 66.667 0.00 0.00 0.00 3.85
2348 4671 0.108138 CTTCTTCCACTAGCGGGGTG 60.108 60.000 0.00 0.00 34.78 4.61
2349 4672 0.252103 TCTTCTTCCACTAGCGGGGT 60.252 55.000 0.00 0.00 0.00 4.95
2350 4673 0.461961 CTCTTCTTCCACTAGCGGGG 59.538 60.000 0.00 0.00 0.00 5.73
2351 4674 1.187087 ACTCTTCTTCCACTAGCGGG 58.813 55.000 0.00 0.00 0.00 6.13
2352 4675 2.231478 TCAACTCTTCTTCCACTAGCGG 59.769 50.000 0.00 0.00 0.00 5.52
2353 4676 3.577649 TCAACTCTTCTTCCACTAGCG 57.422 47.619 0.00 0.00 0.00 4.26
2354 4677 4.688413 CACTTCAACTCTTCTTCCACTAGC 59.312 45.833 0.00 0.00 0.00 3.42
2355 4678 5.221541 ACCACTTCAACTCTTCTTCCACTAG 60.222 44.000 0.00 0.00 0.00 2.57
2356 4679 4.654262 ACCACTTCAACTCTTCTTCCACTA 59.346 41.667 0.00 0.00 0.00 2.74
2357 4680 3.456277 ACCACTTCAACTCTTCTTCCACT 59.544 43.478 0.00 0.00 0.00 4.00
2358 4681 3.809905 ACCACTTCAACTCTTCTTCCAC 58.190 45.455 0.00 0.00 0.00 4.02
2359 4682 4.503714 AACCACTTCAACTCTTCTTCCA 57.496 40.909 0.00 0.00 0.00 3.53
2360 4683 8.617290 TTATAAACCACTTCAACTCTTCTTCC 57.383 34.615 0.00 0.00 0.00 3.46
2361 4684 8.722394 CCTTATAAACCACTTCAACTCTTCTTC 58.278 37.037 0.00 0.00 0.00 2.87
2362 4685 7.665974 CCCTTATAAACCACTTCAACTCTTCTT 59.334 37.037 0.00 0.00 0.00 2.52
2363 4686 7.168905 CCCTTATAAACCACTTCAACTCTTCT 58.831 38.462 0.00 0.00 0.00 2.85
2364 4687 6.940867 ACCCTTATAAACCACTTCAACTCTTC 59.059 38.462 0.00 0.00 0.00 2.87
2365 4688 6.849151 ACCCTTATAAACCACTTCAACTCTT 58.151 36.000 0.00 0.00 0.00 2.85
2366 4689 6.449830 ACCCTTATAAACCACTTCAACTCT 57.550 37.500 0.00 0.00 0.00 3.24
2367 4690 7.447545 AGAAACCCTTATAAACCACTTCAACTC 59.552 37.037 0.00 0.00 0.00 3.01
2368 4691 7.295340 AGAAACCCTTATAAACCACTTCAACT 58.705 34.615 0.00 0.00 0.00 3.16
2369 4692 7.447545 AGAGAAACCCTTATAAACCACTTCAAC 59.552 37.037 0.00 0.00 0.00 3.18
2370 4693 7.523415 AGAGAAACCCTTATAAACCACTTCAA 58.477 34.615 0.00 0.00 0.00 2.69
2371 4694 7.086685 AGAGAAACCCTTATAAACCACTTCA 57.913 36.000 0.00 0.00 0.00 3.02
2372 4695 7.997773 AAGAGAAACCCTTATAAACCACTTC 57.002 36.000 0.00 0.00 0.00 3.01
2373 4696 8.777578 AAAAGAGAAACCCTTATAAACCACTT 57.222 30.769 0.00 0.00 0.00 3.16
2374 4697 9.293404 GTAAAAGAGAAACCCTTATAAACCACT 57.707 33.333 0.00 0.00 0.00 4.00
2375 4698 9.070179 TGTAAAAGAGAAACCCTTATAAACCAC 57.930 33.333 0.00 0.00 0.00 4.16
2376 4699 9.816787 ATGTAAAAGAGAAACCCTTATAAACCA 57.183 29.630 0.00 0.00 0.00 3.67
2378 4701 9.569167 GCATGTAAAAGAGAAACCCTTATAAAC 57.431 33.333 0.00 0.00 0.00 2.01
2379 4702 9.528489 AGCATGTAAAAGAGAAACCCTTATAAA 57.472 29.630 0.00 0.00 0.00 1.40
2382 4705 9.700831 AATAGCATGTAAAAGAGAAACCCTTAT 57.299 29.630 0.00 0.00 0.00 1.73
2383 4706 8.956426 CAATAGCATGTAAAAGAGAAACCCTTA 58.044 33.333 0.00 0.00 0.00 2.69
2384 4707 7.093771 CCAATAGCATGTAAAAGAGAAACCCTT 60.094 37.037 0.00 0.00 0.00 3.95
2385 4708 6.378280 CCAATAGCATGTAAAAGAGAAACCCT 59.622 38.462 0.00 0.00 0.00 4.34
2386 4709 6.377146 TCCAATAGCATGTAAAAGAGAAACCC 59.623 38.462 0.00 0.00 0.00 4.11
2387 4710 7.391148 TCCAATAGCATGTAAAAGAGAAACC 57.609 36.000 0.00 0.00 0.00 3.27
2404 4727 6.219417 TCTTCTCTTCTCAAGCTCCAATAG 57.781 41.667 0.00 0.00 0.00 1.73
2405 4728 5.128499 CCTCTTCTCTTCTCAAGCTCCAATA 59.872 44.000 0.00 0.00 0.00 1.90
2406 4729 4.080975 CCTCTTCTCTTCTCAAGCTCCAAT 60.081 45.833 0.00 0.00 0.00 3.16
2407 4730 3.260380 CCTCTTCTCTTCTCAAGCTCCAA 59.740 47.826 0.00 0.00 0.00 3.53
2408 4731 2.830923 CCTCTTCTCTTCTCAAGCTCCA 59.169 50.000 0.00 0.00 0.00 3.86
2409 4732 2.418609 GCCTCTTCTCTTCTCAAGCTCC 60.419 54.545 0.00 0.00 0.00 4.70
2410 4733 2.418609 GGCCTCTTCTCTTCTCAAGCTC 60.419 54.545 0.00 0.00 0.00 4.09
2411 4734 1.554617 GGCCTCTTCTCTTCTCAAGCT 59.445 52.381 0.00 0.00 0.00 3.74
2412 4735 1.406751 GGGCCTCTTCTCTTCTCAAGC 60.407 57.143 0.84 0.00 0.00 4.01
2413 4736 2.187100 AGGGCCTCTTCTCTTCTCAAG 58.813 52.381 0.00 0.00 0.00 3.02
2414 4737 2.304180 CAAGGGCCTCTTCTCTTCTCAA 59.696 50.000 6.46 0.00 32.41 3.02
2415 4738 1.905215 CAAGGGCCTCTTCTCTTCTCA 59.095 52.381 6.46 0.00 32.41 3.27
2416 4739 1.406751 GCAAGGGCCTCTTCTCTTCTC 60.407 57.143 6.46 0.00 32.41 2.87
2417 4740 0.617935 GCAAGGGCCTCTTCTCTTCT 59.382 55.000 6.46 0.00 32.41 2.85
2418 4741 0.742635 CGCAAGGGCCTCTTCTCTTC 60.743 60.000 6.46 0.00 36.38 2.87
2419 4742 1.298014 CGCAAGGGCCTCTTCTCTT 59.702 57.895 6.46 0.00 36.38 2.85
2420 4743 2.985456 CGCAAGGGCCTCTTCTCT 59.015 61.111 6.46 0.00 36.38 3.10
2421 4744 2.821810 GCGCAAGGGCCTCTTCTC 60.822 66.667 6.46 0.00 36.38 2.87
2422 4745 3.640407 TGCGCAAGGGCCTCTTCT 61.640 61.111 8.16 0.00 36.38 2.85
2423 4746 3.435186 GTGCGCAAGGGCCTCTTC 61.435 66.667 14.00 0.00 36.38 2.87
2424 4747 3.909086 GAGTGCGCAAGGGCCTCTT 62.909 63.158 14.00 0.93 36.38 2.85
2425 4748 4.400961 GAGTGCGCAAGGGCCTCT 62.401 66.667 14.00 1.91 36.38 3.69
2430 4753 3.672295 GAGGAGGAGTGCGCAAGGG 62.672 68.421 14.00 0.00 38.28 3.95
2431 4754 2.125350 GAGGAGGAGTGCGCAAGG 60.125 66.667 14.00 0.00 38.28 3.61
2432 4755 2.125350 GGAGGAGGAGTGCGCAAG 60.125 66.667 14.00 0.00 43.44 4.01
2433 4756 2.922503 TGGAGGAGGAGTGCGCAA 60.923 61.111 14.00 0.00 0.00 4.85
2434 4757 3.695606 GTGGAGGAGGAGTGCGCA 61.696 66.667 5.66 5.66 0.00 6.09
2435 4758 4.459089 GGTGGAGGAGGAGTGCGC 62.459 72.222 0.00 0.00 0.00 6.09
2436 4759 4.135153 CGGTGGAGGAGGAGTGCG 62.135 72.222 0.00 0.00 0.00 5.34
2437 4760 4.459089 GCGGTGGAGGAGGAGTGC 62.459 72.222 0.00 0.00 0.00 4.40
2438 4761 3.775654 GGCGGTGGAGGAGGAGTG 61.776 72.222 0.00 0.00 0.00 3.51
2487 4810 4.388499 TCCTTCTCAACCCGCGGC 62.388 66.667 22.85 0.00 0.00 6.53
2488 4811 2.434359 GTCCTTCTCAACCCGCGG 60.434 66.667 21.04 21.04 0.00 6.46
2489 4812 2.809601 CGTCCTTCTCAACCCGCG 60.810 66.667 0.00 0.00 0.00 6.46
2490 4813 3.119096 GCGTCCTTCTCAACCCGC 61.119 66.667 0.00 0.00 0.00 6.13
2491 4814 2.434359 GGCGTCCTTCTCAACCCG 60.434 66.667 0.00 0.00 0.00 5.28
2492 4815 2.434359 CGGCGTCCTTCTCAACCC 60.434 66.667 0.00 0.00 0.00 4.11
2493 4816 1.289800 GAACGGCGTCCTTCTCAACC 61.290 60.000 15.17 0.00 0.00 3.77
2494 4817 1.289800 GGAACGGCGTCCTTCTCAAC 61.290 60.000 15.17 0.00 34.56 3.18
2495 4818 1.005394 GGAACGGCGTCCTTCTCAA 60.005 57.895 15.17 0.00 34.56 3.02
2496 4819 2.654877 GGAACGGCGTCCTTCTCA 59.345 61.111 15.17 0.00 34.56 3.27
2497 4820 2.125633 GGGAACGGCGTCCTTCTC 60.126 66.667 15.17 6.55 37.85 2.87
2498 4821 2.214920 AAGGGAACGGCGTCCTTCT 61.215 57.895 22.88 11.99 36.22 2.85
2499 4822 2.033194 CAAGGGAACGGCGTCCTTC 61.033 63.158 24.98 14.71 38.70 3.46
2500 4823 2.032071 CAAGGGAACGGCGTCCTT 59.968 61.111 22.88 22.88 41.15 3.36
2501 4824 4.699522 GCAAGGGAACGGCGTCCT 62.700 66.667 15.17 14.45 37.85 3.85
2503 4826 1.862602 ATTTGCAAGGGAACGGCGTC 61.863 55.000 15.17 6.99 38.19 5.19
2504 4827 1.460273 AATTTGCAAGGGAACGGCGT 61.460 50.000 6.77 6.77 38.19 5.68
2509 4832 9.877137 CTTTATTACAAAAATTTGCAAGGGAAC 57.123 29.630 0.00 0.00 41.79 3.62
2516 4839 8.858003 TCACGACTTTATTACAAAAATTTGCA 57.142 26.923 5.82 0.00 41.79 4.08
2520 4843 9.974980 ATGGTTCACGACTTTATTACAAAAATT 57.025 25.926 0.00 0.00 0.00 1.82
2671 4994 6.208599 TCCACCTTTAATCAACATGAAAGACC 59.791 38.462 0.00 0.00 31.83 3.85
2930 5369 1.625508 GGGTGAATAGGGAGGTGTCCT 60.626 57.143 0.00 0.00 43.36 3.85
2931 5370 0.837940 GGGTGAATAGGGAGGTGTCC 59.162 60.000 0.00 0.00 43.05 4.02
2932 5371 0.837940 GGGGTGAATAGGGAGGTGTC 59.162 60.000 0.00 0.00 0.00 3.67
2935 5374 0.421904 ACTGGGGTGAATAGGGAGGT 59.578 55.000 0.00 0.00 0.00 3.85
2937 5376 4.227527 AGTTTAACTGGGGTGAATAGGGAG 59.772 45.833 0.00 0.00 0.00 4.30
2938 5377 4.018779 CAGTTTAACTGGGGTGAATAGGGA 60.019 45.833 16.62 0.00 42.35 4.20
2939 5378 4.018779 TCAGTTTAACTGGGGTGAATAGGG 60.019 45.833 22.82 0.00 45.94 3.53
2940 5379 5.174037 TCAGTTTAACTGGGGTGAATAGG 57.826 43.478 22.82 0.00 45.94 2.57
2941 5380 7.362920 CCAAATCAGTTTAACTGGGGTGAATAG 60.363 40.741 22.82 6.48 45.94 1.73
2943 5382 5.245977 CCAAATCAGTTTAACTGGGGTGAAT 59.754 40.000 22.82 7.02 45.94 2.57
2944 5383 4.586841 CCAAATCAGTTTAACTGGGGTGAA 59.413 41.667 22.82 4.96 45.94 3.18
2945 5384 4.148838 CCAAATCAGTTTAACTGGGGTGA 58.851 43.478 22.82 5.91 45.94 4.02
2946 5385 3.895041 ACCAAATCAGTTTAACTGGGGTG 59.105 43.478 22.82 16.87 45.94 4.61
2947 5386 4.193240 ACCAAATCAGTTTAACTGGGGT 57.807 40.909 22.82 20.23 45.94 4.95
2948 5387 6.452242 GTTAACCAAATCAGTTTAACTGGGG 58.548 40.000 22.82 19.70 45.94 4.96
2949 5388 6.146898 CGTTAACCAAATCAGTTTAACTGGG 58.853 40.000 22.82 17.94 45.94 4.45
2950 5389 5.627780 GCGTTAACCAAATCAGTTTAACTGG 59.372 40.000 22.82 11.34 45.94 4.00
2951 5390 6.733506 TGGCGTTAACCAAATCAGTTTAACTG 60.734 38.462 18.12 18.12 41.34 3.16
2953 5392 5.521544 TGGCGTTAACCAAATCAGTTTAAC 58.478 37.500 0.00 0.00 36.55 2.01
2954 5393 5.769484 TGGCGTTAACCAAATCAGTTTAA 57.231 34.783 0.00 0.00 36.55 1.52
2956 5395 4.038642 ACATGGCGTTAACCAAATCAGTTT 59.961 37.500 0.00 0.00 44.65 2.66
3018 5469 4.377021 ACATGACATGCCGTTAATATCGT 58.623 39.130 15.49 0.00 0.00 3.73
3020 5471 4.997395 AGGACATGACATGCCGTTAATATC 59.003 41.667 15.49 2.21 33.53 1.63
3026 5477 0.324614 TCAGGACATGACATGCCGTT 59.675 50.000 15.49 0.00 33.53 4.44
3139 5606 2.715749 TTGAGGATCGGCACATTGAT 57.284 45.000 0.00 0.00 38.61 2.57
3181 5648 2.584791 CAAATTAACGCAGTCCACAGC 58.415 47.619 0.00 0.00 45.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.