Multiple sequence alignment - TraesCS7A01G129500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G129500 chr7A 100.000 3677 0 0 1 3677 83529094 83525418 0.000000e+00 6791.0
1 TraesCS7A01G129500 chr7A 83.290 383 56 6 1010 1385 29165568 29165187 2.720000e-91 346.0
2 TraesCS7A01G129500 chr7A 83.224 304 39 9 1012 1312 85121640 85121346 6.050000e-68 268.0
3 TraesCS7A01G129500 chr7A 79.104 402 43 14 3316 3677 25638395 25637995 4.750000e-59 239.0
4 TraesCS7A01G129500 chr7A 77.804 428 54 20 3290 3677 34190124 34189698 3.690000e-55 226.0
5 TraesCS7A01G129500 chr7A 87.395 119 15 0 644 762 682758570 682758688 1.780000e-28 137.0
6 TraesCS7A01G129500 chr4A 97.452 981 24 1 1383 2362 453306142 453307122 0.000000e+00 1672.0
7 TraesCS7A01G129500 chr4A 97.436 975 24 1 1383 2356 210938916 210939890 0.000000e+00 1661.0
8 TraesCS7A01G129500 chr4A 97.431 973 24 1 1387 2358 36284362 36283390 0.000000e+00 1657.0
9 TraesCS7A01G129500 chr4A 80.000 295 48 9 1007 1297 705546383 705546096 1.340000e-49 207.0
10 TraesCS7A01G129500 chr4A 77.946 331 63 8 999 1324 66559391 66559066 8.050000e-47 198.0
11 TraesCS7A01G129500 chr4A 82.979 188 28 3 2418 2601 701293748 701293935 2.270000e-37 167.0
12 TraesCS7A01G129500 chr2B 97.641 975 22 1 1383 2356 161427307 161426333 0.000000e+00 1672.0
13 TraesCS7A01G129500 chr2B 97.641 975 22 1 1383 2356 774205822 774204848 0.000000e+00 1672.0
14 TraesCS7A01G129500 chr2B 78.220 427 54 13 3290 3677 4586559 4586133 1.710000e-58 237.0
15 TraesCS7A01G129500 chr2B 78.037 428 53 16 3290 3677 774374134 774374560 7.940000e-57 231.0
16 TraesCS7A01G129500 chr2B 89.256 121 12 1 642 762 789453403 789453284 2.290000e-32 150.0
17 TraesCS7A01G129500 chr2B 100.000 29 0 0 2830 2858 644172944 644172916 2.000000e-03 54.7
18 TraesCS7A01G129500 chr5A 97.538 975 23 1 1383 2356 675470886 675471860 0.000000e+00 1666.0
19 TraesCS7A01G129500 chr5A 75.524 143 30 2 3295 3436 657720274 657720136 8.520000e-07 65.8
20 TraesCS7A01G129500 chr1A 97.538 975 23 1 1383 2356 6929761 6930735 0.000000e+00 1666.0
21 TraesCS7A01G129500 chr1A 77.336 428 56 20 3290 3677 547844462 547844036 8.000000e-52 215.0
22 TraesCS7A01G129500 chr1A 76.106 339 55 15 3290 3604 5694242 5694578 1.770000e-33 154.0
23 TraesCS7A01G129500 chr1A 78.534 191 33 6 1020 1206 337812168 337811982 6.450000e-23 119.0
24 TraesCS7A01G129500 chr3A 97.436 975 24 1 1383 2356 177701745 177702719 0.000000e+00 1661.0
25 TraesCS7A01G129500 chr3A 97.245 980 25 2 1378 2356 504032723 504031745 0.000000e+00 1659.0
26 TraesCS7A01G129500 chr3A 80.455 220 23 10 3477 3677 705357634 705357852 2.290000e-32 150.0
27 TraesCS7A01G129500 chr7D 84.823 962 92 31 2357 3291 80771989 80771055 0.000000e+00 918.0
28 TraesCS7A01G129500 chr7D 92.525 602 16 11 794 1386 80772566 80771985 0.000000e+00 835.0
29 TraesCS7A01G129500 chr7D 86.340 571 44 19 35 583 80779069 80778511 3.160000e-165 592.0
30 TraesCS7A01G129500 chr7D 81.481 324 48 9 1007 1321 22624665 22624345 4.710000e-64 255.0
31 TraesCS7A01G129500 chr7D 82.119 302 39 10 2905 3194 80771321 80771023 1.020000e-60 244.0
32 TraesCS7A01G129500 chr7D 89.286 196 19 2 3097 3291 80771376 80771182 1.020000e-60 244.0
33 TraesCS7A01G129500 chr7D 78.118 425 52 14 3290 3674 79973466 79973889 7.940000e-57 231.0
34 TraesCS7A01G129500 chr7D 91.339 127 11 0 636 762 395356386 395356260 1.360000e-39 174.0
35 TraesCS7A01G129500 chr7D 75.410 427 66 16 3290 3677 80010088 80009662 1.760000e-38 171.0
36 TraesCS7A01G129500 chr7D 75.467 428 64 19 3290 3677 104173469 104173895 1.760000e-38 171.0
37 TraesCS7A01G129500 chr7D 94.595 37 0 2 3548 3583 578712982 578713017 5.130000e-04 56.5
38 TraesCS7A01G129500 chr7B 86.275 714 52 19 2357 3042 27974152 27973457 0.000000e+00 734.0
39 TraesCS7A01G129500 chr7B 92.827 474 23 7 923 1386 27974620 27974148 0.000000e+00 676.0
40 TraesCS7A01G129500 chr7B 83.226 620 73 16 3017 3610 27973438 27972824 1.160000e-149 540.0
41 TraesCS7A01G129500 chr7B 97.183 71 1 1 828 898 27975091 27975022 6.450000e-23 119.0
42 TraesCS7A01G129500 chr7B 96.226 53 2 0 710 762 676970125 676970073 1.820000e-13 87.9
43 TraesCS7A01G129500 chr7B 100.000 28 0 0 2830 2857 302576016 302576043 7.000000e-03 52.8
44 TraesCS7A01G129500 chr1D 82.903 310 47 2 2357 2660 262288209 262288518 1.300000e-69 274.0
45 TraesCS7A01G129500 chr1D 94.595 37 0 2 3548 3583 477492978 477492943 5.130000e-04 56.5
46 TraesCS7A01G129500 chr6B 78.271 428 52 16 3290 3677 116101260 116100834 1.710000e-58 237.0
47 TraesCS7A01G129500 chr6B 77.103 428 57 14 3290 3677 49559336 49558910 3.720000e-50 209.0
48 TraesCS7A01G129500 chr3D 78.271 428 52 16 3290 3677 577236144 577236570 1.710000e-58 237.0
49 TraesCS7A01G129500 chr3D 98.113 53 1 0 710 762 452820194 452820142 3.910000e-15 93.5
50 TraesCS7A01G129500 chr1B 78.037 428 53 13 3290 3677 31815767 31815341 7.940000e-57 231.0
51 TraesCS7A01G129500 chr3B 78.304 401 48 9 3316 3677 543177944 543177544 4.780000e-54 222.0
52 TraesCS7A01G129500 chr5D 76.869 428 58 22 3290 3677 6974392 6974818 1.730000e-48 204.0
53 TraesCS7A01G129500 chr5D 90.083 121 6 1 642 762 404878370 404878256 6.360000e-33 152.0
54 TraesCS7A01G129500 chr4D 95.868 121 5 0 642 762 294448696 294448576 2.900000e-46 196.0
55 TraesCS7A01G129500 chr4B 79.767 257 52 0 1068 1324 471776016 471775760 1.740000e-43 187.0
56 TraesCS7A01G129500 chr2A 92.424 66 5 0 636 701 767024141 767024206 1.090000e-15 95.3
57 TraesCS7A01G129500 chr2A 94.595 37 0 2 3548 3583 713460153 713460188 5.130000e-04 56.5
58 TraesCS7A01G129500 chr2D 98.113 53 1 0 710 762 334318808 334318860 3.910000e-15 93.5
59 TraesCS7A01G129500 chr6D 96.226 53 2 0 710 762 242999011 242998959 1.820000e-13 87.9
60 TraesCS7A01G129500 chrUn 91.071 56 5 0 3290 3345 205764784 205764839 3.940000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G129500 chr7A 83525418 83529094 3676 True 6791.00 6791 100.00000 1 3677 1 chr7A.!!$R4 3676
1 TraesCS7A01G129500 chr4A 453306142 453307122 980 False 1672.00 1672 97.45200 1383 2362 1 chr4A.!!$F2 979
2 TraesCS7A01G129500 chr4A 210938916 210939890 974 False 1661.00 1661 97.43600 1383 2356 1 chr4A.!!$F1 973
3 TraesCS7A01G129500 chr4A 36283390 36284362 972 True 1657.00 1657 97.43100 1387 2358 1 chr4A.!!$R1 971
4 TraesCS7A01G129500 chr2B 161426333 161427307 974 True 1672.00 1672 97.64100 1383 2356 1 chr2B.!!$R2 973
5 TraesCS7A01G129500 chr2B 774204848 774205822 974 True 1672.00 1672 97.64100 1383 2356 1 chr2B.!!$R4 973
6 TraesCS7A01G129500 chr5A 675470886 675471860 974 False 1666.00 1666 97.53800 1383 2356 1 chr5A.!!$F1 973
7 TraesCS7A01G129500 chr1A 6929761 6930735 974 False 1666.00 1666 97.53800 1383 2356 1 chr1A.!!$F2 973
8 TraesCS7A01G129500 chr3A 177701745 177702719 974 False 1661.00 1661 97.43600 1383 2356 1 chr3A.!!$F1 973
9 TraesCS7A01G129500 chr3A 504031745 504032723 978 True 1659.00 1659 97.24500 1378 2356 1 chr3A.!!$R1 978
10 TraesCS7A01G129500 chr7D 80778511 80779069 558 True 592.00 592 86.34000 35 583 1 chr7D.!!$R3 548
11 TraesCS7A01G129500 chr7D 80771023 80772566 1543 True 560.25 918 87.18825 794 3291 4 chr7D.!!$R5 2497
12 TraesCS7A01G129500 chr7B 27972824 27975091 2267 True 517.25 734 89.87775 828 3610 4 chr7B.!!$R2 2782

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
19 20 0.108207 CAAGAGGAGGCAGGGCTATG 59.892 60.0 0.00 0.0 0.00 2.23 F
739 772 0.108329 TTTCCTCGCTCCGTGGATTC 60.108 55.0 8.92 0.0 46.35 2.52 F
775 808 0.305313 GCCGAAACGTTGCAGTGTTA 59.695 50.0 7.15 0.0 0.00 2.41 F
2063 2493 0.464373 ATCATCACCATGTCCACCGC 60.464 55.0 0.00 0.0 0.00 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1806 2235 0.975556 TCTGTTCATGGCGGCTAGGA 60.976 55.000 11.43 0.0 0.0 2.94 R
2610 3052 1.226888 CCCGGCGTACTCAACTAGC 60.227 63.158 6.01 0.0 0.0 3.42 R
2616 3058 2.438975 ATCGTCCCGGCGTACTCA 60.439 61.111 6.01 0.0 0.0 3.41 R
3211 3720 0.032130 AGAAGCAGAGAAACGCACGA 59.968 50.000 0.00 0.0 0.0 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.056805 CAAGAGGAGGCAGGGCTA 57.943 61.111 0.00 0.00 0.00 3.93
18 19 2.537600 CAAGAGGAGGCAGGGCTAT 58.462 57.895 0.00 0.00 0.00 2.97
19 20 0.108207 CAAGAGGAGGCAGGGCTATG 59.892 60.000 0.00 0.00 0.00 2.23
20 21 0.327000 AAGAGGAGGCAGGGCTATGT 60.327 55.000 0.00 0.00 0.00 2.29
21 22 0.327000 AGAGGAGGCAGGGCTATGTT 60.327 55.000 0.00 0.00 0.00 2.71
22 23 0.179034 GAGGAGGCAGGGCTATGTTG 60.179 60.000 0.00 0.00 0.00 3.33
23 24 1.152881 GGAGGCAGGGCTATGTTGG 60.153 63.158 0.00 0.00 0.00 3.77
24 25 1.635817 GGAGGCAGGGCTATGTTGGA 61.636 60.000 0.00 0.00 0.00 3.53
25 26 0.255890 GAGGCAGGGCTATGTTGGAA 59.744 55.000 0.00 0.00 0.00 3.53
26 27 0.257039 AGGCAGGGCTATGTTGGAAG 59.743 55.000 0.00 0.00 0.00 3.46
27 28 0.255890 GGCAGGGCTATGTTGGAAGA 59.744 55.000 0.00 0.00 0.00 2.87
28 29 1.383523 GCAGGGCTATGTTGGAAGAC 58.616 55.000 0.00 0.00 0.00 3.01
29 30 2.019156 GCAGGGCTATGTTGGAAGACC 61.019 57.143 0.00 0.00 41.70 3.85
32 33 3.926058 GGGCTATGTTGGAAGACCTAA 57.074 47.619 0.00 0.00 37.96 2.69
33 34 4.230745 GGGCTATGTTGGAAGACCTAAA 57.769 45.455 0.00 0.00 37.96 1.85
34 35 4.793201 GGGCTATGTTGGAAGACCTAAAT 58.207 43.478 0.00 0.00 37.96 1.40
35 36 5.937111 GGGCTATGTTGGAAGACCTAAATA 58.063 41.667 0.00 0.00 37.96 1.40
36 37 6.543735 GGGCTATGTTGGAAGACCTAAATAT 58.456 40.000 0.00 0.00 37.96 1.28
37 38 7.004691 GGGCTATGTTGGAAGACCTAAATATT 58.995 38.462 0.00 0.00 37.96 1.28
38 39 7.505923 GGGCTATGTTGGAAGACCTAAATATTT 59.494 37.037 5.89 5.89 37.96 1.40
39 40 8.914011 GGCTATGTTGGAAGACCTAAATATTTT 58.086 33.333 5.91 0.00 37.04 1.82
54 55 1.545841 ATTTTGACGAAAGGCCCTCC 58.454 50.000 0.00 0.00 39.67 4.30
55 56 0.183971 TTTTGACGAAAGGCCCTCCA 59.816 50.000 0.00 0.00 39.67 3.86
115 117 4.949856 TCCTTGCCAAGTCCTCATATTTTC 59.050 41.667 3.37 0.00 0.00 2.29
210 215 3.258872 TGTTTGAATTGGCCTCCATTGAG 59.741 43.478 3.32 0.00 38.42 3.02
267 272 4.323104 GGAGCTCCTCCGCATATCTTAATT 60.323 45.833 26.25 0.00 41.08 1.40
268 273 4.826556 AGCTCCTCCGCATATCTTAATTC 58.173 43.478 0.00 0.00 0.00 2.17
269 274 3.935828 GCTCCTCCGCATATCTTAATTCC 59.064 47.826 0.00 0.00 0.00 3.01
271 276 5.407407 TCCTCCGCATATCTTAATTCCTC 57.593 43.478 0.00 0.00 0.00 3.71
272 277 5.087323 TCCTCCGCATATCTTAATTCCTCT 58.913 41.667 0.00 0.00 0.00 3.69
274 279 6.724441 TCCTCCGCATATCTTAATTCCTCTAA 59.276 38.462 0.00 0.00 0.00 2.10
275 280 7.038659 CCTCCGCATATCTTAATTCCTCTAAG 58.961 42.308 0.00 0.00 0.00 2.18
276 281 7.310113 CCTCCGCATATCTTAATTCCTCTAAGT 60.310 40.741 0.00 0.00 0.00 2.24
277 282 7.378966 TCCGCATATCTTAATTCCTCTAAGTG 58.621 38.462 0.00 0.00 0.00 3.16
278 283 7.232737 TCCGCATATCTTAATTCCTCTAAGTGA 59.767 37.037 0.00 0.00 0.00 3.41
279 284 7.329717 CCGCATATCTTAATTCCTCTAAGTGAC 59.670 40.741 0.00 0.00 0.00 3.67
280 285 7.329717 CGCATATCTTAATTCCTCTAAGTGACC 59.670 40.741 0.00 0.00 0.00 4.02
281 286 7.604545 GCATATCTTAATTCCTCTAAGTGACCC 59.395 40.741 0.00 0.00 0.00 4.46
282 287 8.875168 CATATCTTAATTCCTCTAAGTGACCCT 58.125 37.037 0.00 0.00 0.00 4.34
283 288 6.793505 TCTTAATTCCTCTAAGTGACCCTC 57.206 41.667 0.00 0.00 0.00 4.30
284 289 6.503944 TCTTAATTCCTCTAAGTGACCCTCT 58.496 40.000 0.00 0.00 0.00 3.69
285 290 6.608002 TCTTAATTCCTCTAAGTGACCCTCTC 59.392 42.308 0.00 0.00 0.00 3.20
286 291 3.827817 TTCCTCTAAGTGACCCTCTCA 57.172 47.619 0.00 0.00 0.00 3.27
291 296 3.766591 CTCTAAGTGACCCTCTCATGTGT 59.233 47.826 0.00 0.00 0.00 3.72
317 322 0.678048 GCTGAGAACCCCACCACATC 60.678 60.000 0.00 0.00 0.00 3.06
354 359 8.896722 ATACTTCCTCTGTCCCGTAATATAAT 57.103 34.615 0.00 0.00 0.00 1.28
355 360 9.986157 ATACTTCCTCTGTCCCGTAATATAATA 57.014 33.333 0.00 0.00 0.00 0.98
357 362 8.750298 ACTTCCTCTGTCCCGTAATATAATATG 58.250 37.037 0.00 0.00 0.00 1.78
358 363 7.108841 TCCTCTGTCCCGTAATATAATATGC 57.891 40.000 0.00 0.00 0.00 3.14
359 364 6.097839 TCCTCTGTCCCGTAATATAATATGCC 59.902 42.308 0.00 0.00 0.00 4.40
360 365 6.127168 CCTCTGTCCCGTAATATAATATGCCA 60.127 42.308 0.00 0.00 0.00 4.92
361 366 6.636705 TCTGTCCCGTAATATAATATGCCAC 58.363 40.000 0.00 0.00 0.00 5.01
401 430 0.116342 GGAAAAATGGGTCCCCTGGT 59.884 55.000 5.13 0.00 36.94 4.00
408 437 2.936032 GGTCCCCTGGTGAAGCCT 60.936 66.667 0.00 0.00 38.35 4.58
412 441 1.201429 TCCCCTGGTGAAGCCTTCTC 61.201 60.000 5.96 1.74 38.35 2.87
432 461 2.174639 TCTGGGGTGTGATTGTTTCAGT 59.825 45.455 0.00 0.00 34.17 3.41
445 474 5.720371 TTGTTTCAGTAACATCCCCATTG 57.280 39.130 0.00 0.00 45.72 2.82
481 510 6.701400 GGTATTTGACAGTGAAAATGCACTTT 59.299 34.615 18.14 0.00 46.42 2.66
482 511 7.224557 GGTATTTGACAGTGAAAATGCACTTTT 59.775 33.333 18.14 0.70 46.42 2.27
504 536 6.800072 TTTTTAACAAGTTGATCCACCCTT 57.200 33.333 10.54 0.00 0.00 3.95
580 613 7.384115 TCAGTTATTCGAAACAAGTTCTGGTAG 59.616 37.037 0.00 0.00 33.70 3.18
583 616 5.524971 TTCGAAACAAGTTCTGGTAGAGA 57.475 39.130 0.00 0.00 33.70 3.10
584 617 5.122512 TCGAAACAAGTTCTGGTAGAGAG 57.877 43.478 0.00 0.00 33.70 3.20
585 618 3.675698 CGAAACAAGTTCTGGTAGAGAGC 59.324 47.826 0.00 0.00 33.70 4.09
586 619 3.686916 AACAAGTTCTGGTAGAGAGCC 57.313 47.619 0.00 0.00 32.37 4.70
587 620 2.896039 ACAAGTTCTGGTAGAGAGCCT 58.104 47.619 0.00 0.00 32.37 4.58
588 621 2.564947 ACAAGTTCTGGTAGAGAGCCTG 59.435 50.000 0.00 0.00 32.37 4.85
589 622 1.859302 AGTTCTGGTAGAGAGCCTGG 58.141 55.000 0.00 0.00 32.37 4.45
590 623 1.359474 AGTTCTGGTAGAGAGCCTGGA 59.641 52.381 0.00 0.00 32.37 3.86
591 624 2.180276 GTTCTGGTAGAGAGCCTGGAA 58.820 52.381 0.00 0.00 30.18 3.53
592 625 2.151502 TCTGGTAGAGAGCCTGGAAG 57.848 55.000 0.00 0.00 0.00 3.46
593 626 0.463620 CTGGTAGAGAGCCTGGAAGC 59.536 60.000 0.00 0.00 0.00 3.86
595 628 1.199615 GGTAGAGAGCCTGGAAGCTT 58.800 55.000 0.00 0.00 45.15 3.74
596 629 1.134551 GGTAGAGAGCCTGGAAGCTTG 60.135 57.143 2.10 0.00 45.15 4.01
597 630 0.539051 TAGAGAGCCTGGAAGCTTGC 59.461 55.000 11.58 11.58 45.15 4.01
598 631 1.200092 AGAGAGCCTGGAAGCTTGCT 61.200 55.000 19.34 13.90 45.15 3.91
599 632 0.322366 GAGAGCCTGGAAGCTTGCTT 60.322 55.000 19.34 7.65 45.15 3.91
600 633 0.608582 AGAGCCTGGAAGCTTGCTTG 60.609 55.000 19.34 10.78 45.15 4.01
601 634 1.593296 GAGCCTGGAAGCTTGCTTGG 61.593 60.000 19.34 19.80 45.15 3.61
602 635 1.604593 GCCTGGAAGCTTGCTTGGA 60.605 57.895 25.59 5.37 0.00 3.53
603 636 0.969409 GCCTGGAAGCTTGCTTGGAT 60.969 55.000 25.59 0.00 0.00 3.41
604 637 1.683011 GCCTGGAAGCTTGCTTGGATA 60.683 52.381 25.59 4.39 0.00 2.59
605 638 2.295885 CCTGGAAGCTTGCTTGGATAG 58.704 52.381 19.34 6.64 0.00 2.08
606 639 2.356535 CCTGGAAGCTTGCTTGGATAGT 60.357 50.000 19.34 0.00 0.00 2.12
607 640 3.350833 CTGGAAGCTTGCTTGGATAGTT 58.649 45.455 19.34 0.00 0.00 2.24
608 641 3.084039 TGGAAGCTTGCTTGGATAGTTG 58.916 45.455 19.34 0.00 0.00 3.16
609 642 2.424956 GGAAGCTTGCTTGGATAGTTGG 59.575 50.000 12.92 0.00 0.00 3.77
610 643 3.347216 GAAGCTTGCTTGGATAGTTGGA 58.653 45.455 12.92 0.00 0.00 3.53
611 644 3.659183 AGCTTGCTTGGATAGTTGGAT 57.341 42.857 0.00 0.00 0.00 3.41
612 645 4.778213 AGCTTGCTTGGATAGTTGGATA 57.222 40.909 0.00 0.00 0.00 2.59
613 646 5.316158 AGCTTGCTTGGATAGTTGGATAT 57.684 39.130 0.00 0.00 0.00 1.63
614 647 6.439636 AGCTTGCTTGGATAGTTGGATATA 57.560 37.500 0.00 0.00 0.00 0.86
615 648 6.234177 AGCTTGCTTGGATAGTTGGATATAC 58.766 40.000 0.00 0.00 0.00 1.47
616 649 5.412904 GCTTGCTTGGATAGTTGGATATACC 59.587 44.000 0.00 0.00 39.54 2.73
617 650 5.499004 TGCTTGGATAGTTGGATATACCC 57.501 43.478 0.00 0.00 38.00 3.69
618 651 4.910913 TGCTTGGATAGTTGGATATACCCA 59.089 41.667 0.00 0.00 38.00 4.51
619 652 5.221843 TGCTTGGATAGTTGGATATACCCAC 60.222 44.000 0.00 0.00 35.62 4.61
620 653 5.013183 GCTTGGATAGTTGGATATACCCACT 59.987 44.000 0.00 0.00 45.05 4.00
621 654 6.212791 GCTTGGATAGTTGGATATACCCACTA 59.787 42.308 0.00 0.00 46.30 2.74
622 655 7.579723 GCTTGGATAGTTGGATATACCCACTAG 60.580 44.444 0.00 0.00 45.74 2.57
623 656 5.720041 TGGATAGTTGGATATACCCACTAGC 59.280 44.000 0.00 0.00 45.74 3.42
624 657 5.958987 GGATAGTTGGATATACCCACTAGCT 59.041 44.000 12.56 0.00 46.10 3.32
625 658 6.440965 GGATAGTTGGATATACCCACTAGCTT 59.559 42.308 12.56 0.00 46.10 3.74
626 659 5.552870 AGTTGGATATACCCACTAGCTTG 57.447 43.478 0.00 0.00 41.92 4.01
627 660 5.216622 AGTTGGATATACCCACTAGCTTGA 58.783 41.667 1.04 0.00 41.92 3.02
628 661 5.665812 AGTTGGATATACCCACTAGCTTGAA 59.334 40.000 1.04 0.00 41.92 2.69
629 662 5.808366 TGGATATACCCACTAGCTTGAAG 57.192 43.478 1.04 0.00 38.00 3.02
630 663 5.464069 TGGATATACCCACTAGCTTGAAGA 58.536 41.667 1.04 0.00 38.00 2.87
631 664 5.304614 TGGATATACCCACTAGCTTGAAGAC 59.695 44.000 1.04 0.00 38.00 3.01
632 665 5.279556 GGATATACCCACTAGCTTGAAGACC 60.280 48.000 1.04 0.00 0.00 3.85
633 666 0.984995 ACCCACTAGCTTGAAGACCC 59.015 55.000 1.04 0.00 0.00 4.46
634 667 0.984230 CCCACTAGCTTGAAGACCCA 59.016 55.000 1.04 0.00 0.00 4.51
635 668 1.351017 CCCACTAGCTTGAAGACCCAA 59.649 52.381 1.04 0.00 0.00 4.12
636 669 2.025887 CCCACTAGCTTGAAGACCCAAT 60.026 50.000 1.04 0.00 0.00 3.16
637 670 3.562176 CCCACTAGCTTGAAGACCCAATT 60.562 47.826 1.04 0.00 0.00 2.32
638 671 4.324254 CCCACTAGCTTGAAGACCCAATTA 60.324 45.833 1.04 0.00 0.00 1.40
639 672 5.253330 CCACTAGCTTGAAGACCCAATTAA 58.747 41.667 1.04 0.00 0.00 1.40
640 673 5.355350 CCACTAGCTTGAAGACCCAATTAAG 59.645 44.000 1.04 0.00 0.00 1.85
641 674 5.355350 CACTAGCTTGAAGACCCAATTAAGG 59.645 44.000 1.04 0.00 0.00 2.69
642 675 3.092301 AGCTTGAAGACCCAATTAAGGC 58.908 45.455 0.00 0.00 0.00 4.35
643 676 2.166459 GCTTGAAGACCCAATTAAGGCC 59.834 50.000 0.00 0.00 0.00 5.19
644 677 2.525105 TGAAGACCCAATTAAGGCCC 57.475 50.000 0.00 0.00 0.00 5.80
645 678 2.000048 TGAAGACCCAATTAAGGCCCT 59.000 47.619 0.00 0.00 0.00 5.19
646 679 2.291540 TGAAGACCCAATTAAGGCCCTG 60.292 50.000 0.00 0.00 0.00 4.45
647 680 1.382914 AGACCCAATTAAGGCCCTGT 58.617 50.000 0.00 0.00 0.00 4.00
648 681 1.716503 AGACCCAATTAAGGCCCTGTT 59.283 47.619 0.00 0.00 0.00 3.16
649 682 2.100197 GACCCAATTAAGGCCCTGTTC 58.900 52.381 0.00 0.00 0.00 3.18
650 683 1.102978 CCCAATTAAGGCCCTGTTCG 58.897 55.000 0.00 0.00 0.00 3.95
651 684 1.102978 CCAATTAAGGCCCTGTTCGG 58.897 55.000 0.00 0.00 0.00 4.30
652 685 1.340600 CCAATTAAGGCCCTGTTCGGA 60.341 52.381 0.00 0.00 33.16 4.55
653 686 2.442413 CAATTAAGGCCCTGTTCGGAA 58.558 47.619 0.00 0.00 33.16 4.30
654 687 3.023832 CAATTAAGGCCCTGTTCGGAAT 58.976 45.455 0.00 0.00 33.16 3.01
655 688 2.413310 TTAAGGCCCTGTTCGGAATC 57.587 50.000 0.00 0.00 33.16 2.52
656 689 0.177141 TAAGGCCCTGTTCGGAATCG 59.823 55.000 0.00 0.00 37.82 3.34
657 690 3.202706 GGCCCTGTTCGGAATCGC 61.203 66.667 0.00 0.00 36.13 4.58
658 691 3.564027 GCCCTGTTCGGAATCGCG 61.564 66.667 0.00 0.00 36.13 5.87
659 692 3.564027 CCCTGTTCGGAATCGCGC 61.564 66.667 0.00 0.00 36.13 6.86
660 693 3.564027 CCTGTTCGGAATCGCGCC 61.564 66.667 0.00 0.00 36.13 6.53
701 734 3.052082 CGGGTGGAGCTGCAGTTG 61.052 66.667 16.64 0.00 0.00 3.16
702 735 2.431683 GGGTGGAGCTGCAGTTGA 59.568 61.111 16.64 0.00 0.00 3.18
703 736 1.228245 GGGTGGAGCTGCAGTTGAA 60.228 57.895 16.64 0.00 0.00 2.69
704 737 0.823356 GGGTGGAGCTGCAGTTGAAA 60.823 55.000 16.64 0.00 0.00 2.69
705 738 1.032014 GGTGGAGCTGCAGTTGAAAA 58.968 50.000 16.64 0.00 0.00 2.29
706 739 1.615392 GGTGGAGCTGCAGTTGAAAAT 59.385 47.619 16.64 0.00 0.00 1.82
707 740 2.352127 GGTGGAGCTGCAGTTGAAAATC 60.352 50.000 16.64 0.00 0.00 2.17
708 741 2.294233 GTGGAGCTGCAGTTGAAAATCA 59.706 45.455 16.64 0.52 0.00 2.57
709 742 2.294233 TGGAGCTGCAGTTGAAAATCAC 59.706 45.455 16.64 0.00 0.00 3.06
710 743 2.578495 GAGCTGCAGTTGAAAATCACG 58.422 47.619 16.64 0.00 0.00 4.35
711 744 1.267806 AGCTGCAGTTGAAAATCACGG 59.732 47.619 16.64 0.00 0.00 4.94
712 745 1.266718 GCTGCAGTTGAAAATCACGGA 59.733 47.619 16.64 0.00 0.00 4.69
713 746 2.666619 GCTGCAGTTGAAAATCACGGAG 60.667 50.000 16.64 0.00 0.00 4.63
714 747 1.266718 TGCAGTTGAAAATCACGGAGC 59.733 47.619 0.00 0.00 0.00 4.70
715 748 1.537202 GCAGTTGAAAATCACGGAGCT 59.463 47.619 0.00 0.00 0.00 4.09
716 749 2.666619 GCAGTTGAAAATCACGGAGCTG 60.667 50.000 0.00 0.00 0.00 4.24
717 750 1.537202 AGTTGAAAATCACGGAGCTGC 59.463 47.619 0.00 0.00 0.00 5.25
718 751 1.266718 GTTGAAAATCACGGAGCTGCA 59.733 47.619 5.91 0.00 0.00 4.41
719 752 1.159285 TGAAAATCACGGAGCTGCAG 58.841 50.000 10.11 10.11 0.00 4.41
720 753 1.160137 GAAAATCACGGAGCTGCAGT 58.840 50.000 16.64 1.59 0.00 4.40
721 754 1.537202 GAAAATCACGGAGCTGCAGTT 59.463 47.619 16.64 9.79 0.00 3.16
722 755 1.609208 AAATCACGGAGCTGCAGTTT 58.391 45.000 16.64 3.84 0.00 2.66
723 756 1.160137 AATCACGGAGCTGCAGTTTC 58.840 50.000 16.64 7.27 0.00 2.78
724 757 0.674895 ATCACGGAGCTGCAGTTTCC 60.675 55.000 22.33 22.33 0.00 3.13
725 758 1.302033 CACGGAGCTGCAGTTTCCT 60.302 57.895 26.47 13.05 0.00 3.36
726 759 1.004440 ACGGAGCTGCAGTTTCCTC 60.004 57.895 26.47 19.16 0.00 3.71
727 760 2.097038 CGGAGCTGCAGTTTCCTCG 61.097 63.158 26.47 16.16 0.00 4.63
728 761 2.394563 GGAGCTGCAGTTTCCTCGC 61.395 63.158 23.97 7.10 0.00 5.03
729 762 1.375268 GAGCTGCAGTTTCCTCGCT 60.375 57.895 16.64 3.74 0.00 4.93
730 763 1.357991 GAGCTGCAGTTTCCTCGCTC 61.358 60.000 16.64 10.04 37.35 5.03
731 764 2.394563 GCTGCAGTTTCCTCGCTCC 61.395 63.158 16.64 0.00 0.00 4.70
732 765 2.048222 TGCAGTTTCCTCGCTCCG 60.048 61.111 0.00 0.00 0.00 4.63
733 766 2.048127 GCAGTTTCCTCGCTCCGT 60.048 61.111 0.00 0.00 0.00 4.69
734 767 2.383527 GCAGTTTCCTCGCTCCGTG 61.384 63.158 0.00 0.00 0.00 4.94
735 768 1.738099 CAGTTTCCTCGCTCCGTGG 60.738 63.158 0.00 0.00 41.16 4.94
736 769 1.906824 AGTTTCCTCGCTCCGTGGA 60.907 57.895 4.51 4.51 45.65 4.02
737 770 1.218316 GTTTCCTCGCTCCGTGGAT 59.782 57.895 8.92 0.00 46.35 3.41
738 771 0.391263 GTTTCCTCGCTCCGTGGATT 60.391 55.000 8.92 0.00 46.35 3.01
739 772 0.108329 TTTCCTCGCTCCGTGGATTC 60.108 55.000 8.92 0.00 46.35 2.52
740 773 1.956629 TTCCTCGCTCCGTGGATTCC 61.957 60.000 8.92 0.00 46.35 3.01
741 774 2.278857 CTCGCTCCGTGGATTCCG 60.279 66.667 0.00 0.00 0.00 4.30
742 775 3.774959 CTCGCTCCGTGGATTCCGG 62.775 68.421 0.00 0.00 46.83 5.14
743 776 4.891727 CGCTCCGTGGATTCCGGG 62.892 72.222 0.00 6.32 45.51 5.73
744 777 3.467226 GCTCCGTGGATTCCGGGA 61.467 66.667 13.08 13.08 45.51 5.14
745 778 2.815308 CTCCGTGGATTCCGGGAG 59.185 66.667 21.53 21.53 45.51 4.30
746 779 2.038329 TCCGTGGATTCCGGGAGT 59.962 61.111 0.00 0.00 45.51 3.85
747 780 2.186903 CCGTGGATTCCGGGAGTG 59.813 66.667 0.00 0.00 41.78 3.51
748 781 2.186903 CGTGGATTCCGGGAGTGG 59.813 66.667 0.00 0.00 0.00 4.00
749 782 2.590092 GTGGATTCCGGGAGTGGG 59.410 66.667 0.00 0.00 0.00 4.61
750 783 2.124085 TGGATTCCGGGAGTGGGT 59.876 61.111 0.00 0.00 0.00 4.51
751 784 2.297895 TGGATTCCGGGAGTGGGTG 61.298 63.158 0.00 0.00 0.00 4.61
752 785 2.590092 GATTCCGGGAGTGGGTGG 59.410 66.667 0.00 0.00 0.00 4.61
753 786 3.015145 ATTCCGGGAGTGGGTGGG 61.015 66.667 0.00 0.00 0.00 4.61
754 787 3.883822 ATTCCGGGAGTGGGTGGGT 62.884 63.158 0.00 0.00 0.00 4.51
755 788 4.585216 TCCGGGAGTGGGTGGGTT 62.585 66.667 0.00 0.00 0.00 4.11
756 789 4.344865 CCGGGAGTGGGTGGGTTG 62.345 72.222 0.00 0.00 0.00 3.77
758 791 4.678743 GGGAGTGGGTGGGTTGCC 62.679 72.222 0.00 0.00 0.00 4.52
760 793 3.948719 GAGTGGGTGGGTTGCCGA 61.949 66.667 0.00 0.00 0.00 5.54
761 794 3.485346 GAGTGGGTGGGTTGCCGAA 62.485 63.158 0.00 0.00 0.00 4.30
762 795 2.519780 GTGGGTGGGTTGCCGAAA 60.520 61.111 0.00 0.00 0.00 3.46
763 796 2.519780 TGGGTGGGTTGCCGAAAC 60.520 61.111 0.00 0.00 38.12 2.78
764 797 3.666253 GGGTGGGTTGCCGAAACG 61.666 66.667 0.00 0.00 39.91 3.60
765 798 2.903350 GGTGGGTTGCCGAAACGT 60.903 61.111 0.00 0.00 39.91 3.99
766 799 2.483197 GGTGGGTTGCCGAAACGTT 61.483 57.895 0.00 0.00 39.91 3.99
767 800 1.298788 GTGGGTTGCCGAAACGTTG 60.299 57.895 0.00 0.00 39.91 4.10
768 801 2.354188 GGGTTGCCGAAACGTTGC 60.354 61.111 0.00 0.00 39.91 4.17
769 802 2.409651 GGTTGCCGAAACGTTGCA 59.590 55.556 7.15 7.41 39.91 4.08
770 803 1.657181 GGTTGCCGAAACGTTGCAG 60.657 57.895 7.15 0.00 39.91 4.41
771 804 1.063488 GTTGCCGAAACGTTGCAGT 59.937 52.632 7.15 0.00 36.21 4.40
772 805 1.063327 TTGCCGAAACGTTGCAGTG 59.937 52.632 7.15 0.00 36.21 3.66
773 806 1.649390 TTGCCGAAACGTTGCAGTGT 61.649 50.000 7.15 0.00 36.21 3.55
774 807 1.063488 GCCGAAACGTTGCAGTGTT 59.937 52.632 7.15 0.24 0.00 3.32
775 808 0.305313 GCCGAAACGTTGCAGTGTTA 59.695 50.000 7.15 0.00 0.00 2.41
776 809 1.918543 GCCGAAACGTTGCAGTGTTAC 60.919 52.381 7.15 0.00 0.00 2.50
777 810 1.595794 CCGAAACGTTGCAGTGTTACT 59.404 47.619 7.15 0.00 0.00 2.24
778 811 2.796031 CCGAAACGTTGCAGTGTTACTA 59.204 45.455 7.15 0.00 0.00 1.82
779 812 3.430895 CCGAAACGTTGCAGTGTTACTAT 59.569 43.478 7.15 0.00 0.00 2.12
780 813 4.433805 CCGAAACGTTGCAGTGTTACTATC 60.434 45.833 7.15 0.00 0.00 2.08
781 814 4.384846 CGAAACGTTGCAGTGTTACTATCT 59.615 41.667 7.15 0.00 0.00 1.98
782 815 5.570206 CGAAACGTTGCAGTGTTACTATCTA 59.430 40.000 7.15 0.00 0.00 1.98
783 816 6.237227 CGAAACGTTGCAGTGTTACTATCTAG 60.237 42.308 7.15 0.00 0.00 2.43
784 817 5.892160 ACGTTGCAGTGTTACTATCTAGA 57.108 39.130 0.00 0.00 0.00 2.43
785 818 5.881447 ACGTTGCAGTGTTACTATCTAGAG 58.119 41.667 0.00 0.00 0.00 2.43
786 819 5.163642 ACGTTGCAGTGTTACTATCTAGAGG 60.164 44.000 0.00 0.00 0.00 3.69
787 820 5.066117 CGTTGCAGTGTTACTATCTAGAGGA 59.934 44.000 0.00 0.00 0.00 3.71
788 821 6.500041 GTTGCAGTGTTACTATCTAGAGGAG 58.500 44.000 0.00 0.54 0.00 3.69
789 822 5.133941 TGCAGTGTTACTATCTAGAGGAGG 58.866 45.833 0.00 0.00 0.00 4.30
790 823 4.521256 GCAGTGTTACTATCTAGAGGAGGG 59.479 50.000 0.00 0.00 0.00 4.30
791 824 5.690632 GCAGTGTTACTATCTAGAGGAGGGA 60.691 48.000 0.00 0.00 0.00 4.20
792 825 6.366340 CAGTGTTACTATCTAGAGGAGGGAA 58.634 44.000 0.00 0.00 0.00 3.97
798 831 4.923236 ACTATCTAGAGGAGGGAAGATGGA 59.077 45.833 0.00 0.00 32.89 3.41
902 939 2.773661 AGCCTCATGGATGATGTACACA 59.226 45.455 0.00 0.00 36.02 3.72
903 940 3.393609 AGCCTCATGGATGATGTACACAT 59.606 43.478 0.00 4.10 36.02 3.21
904 941 3.501062 GCCTCATGGATGATGTACACATG 59.499 47.826 14.25 14.25 40.06 3.21
905 942 4.711399 CCTCATGGATGATGTACACATGT 58.289 43.478 17.89 0.00 39.76 3.21
906 943 5.128205 CCTCATGGATGATGTACACATGTT 58.872 41.667 17.89 0.00 39.76 2.71
907 944 5.008316 CCTCATGGATGATGTACACATGTTG 59.992 44.000 17.89 13.38 39.76 3.33
908 945 5.743117 TCATGGATGATGTACACATGTTGA 58.257 37.500 17.89 12.72 39.76 3.18
909 946 6.358991 TCATGGATGATGTACACATGTTGAT 58.641 36.000 17.89 0.00 39.76 2.57
910 947 7.507829 TCATGGATGATGTACACATGTTGATA 58.492 34.615 17.89 2.11 39.76 2.15
911 948 7.442062 TCATGGATGATGTACACATGTTGATAC 59.558 37.037 17.89 0.00 39.76 2.24
912 949 6.888105 TGGATGATGTACACATGTTGATACT 58.112 36.000 13.42 0.00 36.57 2.12
913 950 6.986231 TGGATGATGTACACATGTTGATACTC 59.014 38.462 13.42 1.06 36.57 2.59
914 951 7.147672 TGGATGATGTACACATGTTGATACTCT 60.148 37.037 13.42 0.00 36.57 3.24
915 952 7.712639 GGATGATGTACACATGTTGATACTCTT 59.287 37.037 13.42 0.00 36.57 2.85
916 953 9.102757 GATGATGTACACATGTTGATACTCTTT 57.897 33.333 13.42 0.00 36.57 2.52
917 954 8.479313 TGATGTACACATGTTGATACTCTTTC 57.521 34.615 0.00 0.00 36.57 2.62
918 955 8.314021 TGATGTACACATGTTGATACTCTTTCT 58.686 33.333 0.00 0.00 36.57 2.52
958 1372 5.820947 CCCATTACACTAGTTAATCACCCAC 59.179 44.000 0.00 0.00 0.00 4.61
982 1396 2.885266 TCGATAGAGAATTCCACGGGAG 59.115 50.000 0.65 0.00 42.67 4.30
1014 1437 2.203126 GCAATGGCGGGAGGAGAG 60.203 66.667 0.00 0.00 0.00 3.20
1116 1539 3.974871 GAGTACATCGAGGAGGACTTC 57.025 52.381 3.06 0.00 0.00 3.01
1240 1663 1.376424 TACGTCGACGAGGCCTTCT 60.376 57.895 41.52 20.54 43.02 2.85
1244 1667 1.602605 TCGACGAGGCCTTCTGTGA 60.603 57.895 6.77 0.00 0.00 3.58
1359 1788 4.856801 ATGGTCATGCGGTCGGGC 62.857 66.667 0.00 0.00 0.00 6.13
1445 1874 7.233348 TGCAATTTCTGAAAAATCTCTAAGGGT 59.767 33.333 6.95 0.00 0.00 4.34
1530 1959 5.189145 GGAGAGTTGGAGTGGTTTATAAGGA 59.811 44.000 0.00 0.00 0.00 3.36
1577 2006 1.077828 TGAGAAGAGAAGAGGCCCTCA 59.922 52.381 14.46 0.00 32.06 3.86
1584 2013 2.456287 GAAGAGGCCCTCACGCACTT 62.456 60.000 14.46 0.00 32.06 3.16
1806 2235 6.153000 CCTATAAGTATGCGGTGTCTCCTAAT 59.847 42.308 0.00 0.00 0.00 1.73
1818 2247 1.203187 TCTCCTAATCCTAGCCGCCAT 60.203 52.381 0.00 0.00 0.00 4.40
1896 2325 1.686325 CCGGTGATTCCATCCCGTCT 61.686 60.000 0.00 0.00 39.73 4.18
2063 2493 0.464373 ATCATCACCATGTCCACCGC 60.464 55.000 0.00 0.00 0.00 5.68
2278 2708 6.071391 TGCATGTTTAGATCAGAGTCAGTACA 60.071 38.462 0.00 0.00 0.00 2.90
2319 2749 5.059161 GCCATGCTAGTGATTTACTCATGA 58.941 41.667 10.20 0.00 41.03 3.07
2358 2788 8.776376 AAAAATTGCCTATTTACTCAACATGG 57.224 30.769 0.00 0.00 35.39 3.66
2362 2792 3.002348 GCCTATTTACTCAACATGGACGC 59.998 47.826 0.00 0.00 0.00 5.19
2433 2875 3.703127 GAGGGGTTCTTCGGCGGT 61.703 66.667 7.21 0.00 0.00 5.68
2526 2968 1.337167 GGCCACAACTTCTTTGATGCC 60.337 52.381 0.00 6.03 43.32 4.40
2608 3050 1.954528 GTCTTCCAGGACGTCGACA 59.045 57.895 17.16 0.00 0.00 4.35
2610 3052 1.213013 CTTCCAGGACGTCGACAGG 59.787 63.158 17.16 8.54 0.00 4.00
2613 3055 2.044555 CCAGGACGTCGACAGGCTA 61.045 63.158 17.16 0.00 0.00 3.93
2616 3058 0.608582 AGGACGTCGACAGGCTAGTT 60.609 55.000 17.16 0.00 0.00 2.24
2726 3176 3.127548 GTGGTTGATGCAAGTATCCACAG 59.872 47.826 19.22 0.00 37.02 3.66
2727 3177 3.244875 TGGTTGATGCAAGTATCCACAGT 60.245 43.478 0.00 0.00 0.00 3.55
2740 3190 8.328146 CAAGTATCCACAGTGTATCAAATTACG 58.672 37.037 0.00 0.00 0.00 3.18
2741 3191 5.734855 ATCCACAGTGTATCAAATTACGC 57.265 39.130 0.00 0.00 33.69 4.42
2834 3293 6.717289 TGGCATTTTTATATAGTCGGGCTAT 58.283 36.000 7.37 7.37 42.63 2.97
2886 3345 8.465273 AACTAAAGAGCAACAGAAAATAAGGT 57.535 30.769 0.00 0.00 0.00 3.50
2888 3347 8.352942 ACTAAAGAGCAACAGAAAATAAGGTTG 58.647 33.333 0.00 0.00 42.56 3.77
2928 3387 8.980481 TTGAGAGGAAAGACATAAAAAGAACT 57.020 30.769 0.00 0.00 0.00 3.01
2931 3391 8.384607 AGAGGAAAGACATAAAAAGAACTGAC 57.615 34.615 0.00 0.00 0.00 3.51
2948 3408 2.955660 CTGACCACCAAAGTAAAAGCCA 59.044 45.455 0.00 0.00 0.00 4.75
2953 3413 2.986479 CACCAAAGTAAAAGCCAATCGC 59.014 45.455 0.00 0.00 37.98 4.58
2963 3423 4.376340 AAAGCCAATCGCCAGAATAAAG 57.624 40.909 0.00 0.00 38.78 1.85
2964 3424 1.678101 AGCCAATCGCCAGAATAAAGC 59.322 47.619 0.00 0.00 38.78 3.51
2979 3439 7.099764 CAGAATAAAGCCTCTGTGTTTCTCTA 58.900 38.462 0.00 0.00 35.38 2.43
2983 3443 6.420913 AAAGCCTCTGTGTTTCTCTACTTA 57.579 37.500 0.00 0.00 0.00 2.24
3012 3472 5.712446 CCCATCTATGCTAAGCTAGTAGTCA 59.288 44.000 0.00 0.00 0.00 3.41
3032 3492 4.464597 GTCATCCTCTAGTTGGTCAGTTCT 59.535 45.833 4.87 0.00 0.00 3.01
3052 3522 3.967326 TCTTGAGAGAAAGAGTCCACCAA 59.033 43.478 0.00 0.00 32.42 3.67
3071 3578 2.986479 CAACAAAGTAAAAGCCCATCGC 59.014 45.455 0.00 0.00 37.98 4.58
3084 3591 2.551071 GCCCATCGCTAGAATAAAGCCT 60.551 50.000 0.00 0.00 36.60 4.58
3088 3596 2.550978 TCGCTAGAATAAAGCCTGTGC 58.449 47.619 0.00 0.00 36.60 4.57
3102 3610 1.506493 CTGTGCGTTTCTCTGCTTCT 58.494 50.000 0.00 0.00 0.00 2.85
3106 3614 1.221414 GCGTTTCTCTGCTTCTGTGT 58.779 50.000 0.00 0.00 0.00 3.72
3109 3617 1.795286 GTTTCTCTGCTTCTGTGTCCG 59.205 52.381 0.00 0.00 0.00 4.79
3164 3672 3.321497 CCAGTTTCTGAGAGGAAAGACG 58.679 50.000 0.00 0.00 36.12 4.18
3211 3720 2.171448 AGCCCATCGTCAGAATAAAGCT 59.829 45.455 0.00 0.00 0.00 3.74
3233 3742 2.404215 GTGCGTTTCTCTGCTTCTGTA 58.596 47.619 0.00 0.00 0.00 2.74
3265 3774 0.247736 AAGCTAGTTGTCGCCCTCTG 59.752 55.000 0.00 0.00 0.00 3.35
3280 3789 2.257207 CCTCTGGTTGGTCAGTTCCTA 58.743 52.381 0.00 0.00 36.25 2.94
3285 3794 3.578716 CTGGTTGGTCAGTTCCTAAGAGA 59.421 47.826 0.00 0.00 0.00 3.10
3294 3803 7.042950 GGTCAGTTCCTAAGAGAAAAGATACC 58.957 42.308 0.00 0.00 0.00 2.73
3302 3811 9.543231 TCCTAAGAGAAAAGATACCTTTAGTCA 57.457 33.333 0.00 0.00 41.46 3.41
3308 3817 9.220767 GAGAAAAGATACCTTTAGTCATGTTGT 57.779 33.333 0.00 0.00 41.46 3.32
3346 3856 4.286297 AGACTTGTGTTAGCTATTGCCA 57.714 40.909 0.00 0.00 40.80 4.92
3353 3863 5.308014 TGTGTTAGCTATTGCCATATCCAG 58.692 41.667 0.00 0.00 40.80 3.86
3354 3864 5.071653 TGTGTTAGCTATTGCCATATCCAGA 59.928 40.000 0.00 0.00 40.80 3.86
3378 3888 4.180057 GTGGAGTTTGAGACAGCTAGATG 58.820 47.826 6.41 6.41 0.00 2.90
3381 3891 5.105716 TGGAGTTTGAGACAGCTAGATGTAC 60.106 44.000 14.74 11.74 32.25 2.90
3383 3893 6.406400 GGAGTTTGAGACAGCTAGATGTACAT 60.406 42.308 14.74 8.43 32.25 2.29
3387 3897 8.759641 GTTTGAGACAGCTAGATGTACATAATG 58.240 37.037 14.74 6.08 32.25 1.90
3414 3924 2.507484 TGCATGGTGTTCTTGAAGAGG 58.493 47.619 0.00 0.00 0.00 3.69
3421 3931 3.306433 GGTGTTCTTGAAGAGGAGGTCTC 60.306 52.174 0.00 0.00 42.75 3.36
3435 3945 2.814336 GAGGTCTCCATGAAACAACCAC 59.186 50.000 0.00 0.00 0.00 4.16
3437 3947 1.535462 GTCTCCATGAAACAACCACCG 59.465 52.381 0.00 0.00 0.00 4.94
3439 3949 0.538516 TCCATGAAACAACCACCGGG 60.539 55.000 6.32 0.00 41.29 5.73
3457 3967 4.263771 ACCGGGGTATGAAGACAAGAAAAT 60.264 41.667 6.32 0.00 0.00 1.82
3460 3970 5.296035 CGGGGTATGAAGACAAGAAAATACC 59.704 44.000 0.00 0.00 39.09 2.73
3468 3978 7.471721 TGAAGACAAGAAAATACCGCATTATG 58.528 34.615 0.00 0.00 0.00 1.90
3477 3987 1.533625 ACCGCATTATGTGTGCAAGT 58.466 45.000 5.00 0.00 42.62 3.16
3502 4032 0.393537 ACAAGCACCTAGAGCATGGC 60.394 55.000 14.04 0.00 35.21 4.40
3507 4037 0.829333 CACCTAGAGCATGGCACTCT 59.171 55.000 11.78 11.78 46.18 3.24
3540 4070 4.223032 TCCTAGTTAAGAGGTCTTGGCTTG 59.777 45.833 2.32 2.34 37.40 4.01
3554 4084 2.250031 TGGCTTGATTGCATCCAAAGT 58.750 42.857 0.00 0.00 34.05 2.66
3615 4145 7.921786 AGTTATCTTTGTGCTTATAGTTGCA 57.078 32.000 0.00 0.00 36.79 4.08
3616 4146 8.335532 AGTTATCTTTGTGCTTATAGTTGCAA 57.664 30.769 0.00 0.00 41.10 4.08
3617 4147 8.454106 AGTTATCTTTGTGCTTATAGTTGCAAG 58.546 33.333 0.00 0.00 41.10 4.01
3618 4148 8.450964 GTTATCTTTGTGCTTATAGTTGCAAGA 58.549 33.333 0.00 0.00 41.10 3.02
3619 4149 7.636150 ATCTTTGTGCTTATAGTTGCAAGAT 57.364 32.000 0.00 0.00 41.10 2.40
3620 4150 7.076842 TCTTTGTGCTTATAGTTGCAAGATC 57.923 36.000 0.00 0.00 41.10 2.75
3621 4151 6.881065 TCTTTGTGCTTATAGTTGCAAGATCT 59.119 34.615 0.00 0.00 41.10 2.75
3622 4152 7.391554 TCTTTGTGCTTATAGTTGCAAGATCTT 59.608 33.333 0.88 0.88 41.10 2.40
3623 4153 6.668541 TGTGCTTATAGTTGCAAGATCTTC 57.331 37.500 4.57 1.60 41.10 2.87
3624 4154 6.172630 TGTGCTTATAGTTGCAAGATCTTCA 58.827 36.000 4.57 4.33 41.10 3.02
3625 4155 6.092670 TGTGCTTATAGTTGCAAGATCTTCAC 59.907 38.462 4.57 6.76 41.10 3.18
3626 4156 6.092670 GTGCTTATAGTTGCAAGATCTTCACA 59.907 38.462 4.57 4.23 41.10 3.58
3627 4157 6.654582 TGCTTATAGTTGCAAGATCTTCACAA 59.345 34.615 4.57 10.41 36.15 3.33
3628 4158 7.174772 TGCTTATAGTTGCAAGATCTTCACAAA 59.825 33.333 17.76 7.83 36.15 2.83
3629 4159 7.695618 GCTTATAGTTGCAAGATCTTCACAAAG 59.304 37.037 17.76 13.40 0.00 2.77
3630 4160 8.621532 TTATAGTTGCAAGATCTTCACAAAGT 57.378 30.769 17.76 12.47 33.95 2.66
3631 4161 5.179045 AGTTGCAAGATCTTCACAAAGTG 57.821 39.130 17.76 2.84 33.95 3.16
3632 4162 4.883585 AGTTGCAAGATCTTCACAAAGTGA 59.116 37.500 17.76 0.00 41.09 3.41
3633 4163 5.533903 AGTTGCAAGATCTTCACAAAGTGAT 59.466 36.000 17.76 4.47 42.40 3.06
3634 4164 6.712095 AGTTGCAAGATCTTCACAAAGTGATA 59.288 34.615 17.76 0.00 42.40 2.15
3635 4165 6.486253 TGCAAGATCTTCACAAAGTGATAC 57.514 37.500 4.57 0.00 42.40 2.24
3636 4166 6.233434 TGCAAGATCTTCACAAAGTGATACT 58.767 36.000 4.57 0.00 42.40 2.12
3637 4167 7.386059 TGCAAGATCTTCACAAAGTGATACTA 58.614 34.615 4.57 0.00 42.40 1.82
3638 4168 7.877612 TGCAAGATCTTCACAAAGTGATACTAA 59.122 33.333 4.57 0.00 42.40 2.24
3639 4169 8.887717 GCAAGATCTTCACAAAGTGATACTAAT 58.112 33.333 4.57 0.00 42.40 1.73
3641 4171 8.430801 AGATCTTCACAAAGTGATACTAATGC 57.569 34.615 0.12 0.00 42.40 3.56
3642 4172 8.263640 AGATCTTCACAAAGTGATACTAATGCT 58.736 33.333 0.12 0.00 42.40 3.79
3643 4173 7.834068 TCTTCACAAAGTGATACTAATGCTC 57.166 36.000 0.12 0.00 42.40 4.26
3644 4174 7.615403 TCTTCACAAAGTGATACTAATGCTCT 58.385 34.615 0.12 0.00 42.40 4.09
3645 4175 8.097038 TCTTCACAAAGTGATACTAATGCTCTT 58.903 33.333 0.12 0.00 42.40 2.85
3646 4176 7.834068 TCACAAAGTGATACTAATGCTCTTC 57.166 36.000 0.00 0.00 37.67 2.87
3647 4177 7.615403 TCACAAAGTGATACTAATGCTCTTCT 58.385 34.615 0.00 0.00 37.67 2.85
3648 4178 8.749354 TCACAAAGTGATACTAATGCTCTTCTA 58.251 33.333 0.00 0.00 37.67 2.10
3649 4179 8.812329 CACAAAGTGATACTAATGCTCTTCTAC 58.188 37.037 0.00 0.00 35.23 2.59
3650 4180 8.531982 ACAAAGTGATACTAATGCTCTTCTACA 58.468 33.333 0.00 0.00 0.00 2.74
3651 4181 9.539825 CAAAGTGATACTAATGCTCTTCTACAT 57.460 33.333 0.00 0.00 0.00 2.29
3652 4182 9.539825 AAAGTGATACTAATGCTCTTCTACATG 57.460 33.333 0.00 0.00 0.00 3.21
3653 4183 8.470657 AGTGATACTAATGCTCTTCTACATGA 57.529 34.615 0.00 0.00 0.00 3.07
3654 4184 9.087871 AGTGATACTAATGCTCTTCTACATGAT 57.912 33.333 0.00 0.00 0.00 2.45
3655 4185 9.703892 GTGATACTAATGCTCTTCTACATGATT 57.296 33.333 0.00 0.00 0.00 2.57
3659 4189 8.659925 ACTAATGCTCTTCTACATGATTTGAG 57.340 34.615 0.00 1.63 0.00 3.02
3660 4190 6.374565 AATGCTCTTCTACATGATTTGAGC 57.625 37.500 18.06 18.06 40.20 4.26
3661 4191 5.095145 TGCTCTTCTACATGATTTGAGCT 57.905 39.130 22.02 0.00 40.31 4.09
3662 4192 5.114780 TGCTCTTCTACATGATTTGAGCTC 58.885 41.667 22.02 6.82 40.31 4.09
3663 4193 5.114780 GCTCTTCTACATGATTTGAGCTCA 58.885 41.667 13.74 13.74 38.55 4.26
3664 4194 5.234757 GCTCTTCTACATGATTTGAGCTCAG 59.765 44.000 17.43 6.68 38.55 3.35
3665 4195 6.535963 TCTTCTACATGATTTGAGCTCAGA 57.464 37.500 17.43 13.58 0.00 3.27
3666 4196 6.939622 TCTTCTACATGATTTGAGCTCAGAA 58.060 36.000 17.43 14.11 0.00 3.02
3667 4197 7.563020 TCTTCTACATGATTTGAGCTCAGAAT 58.437 34.615 17.43 17.89 0.00 2.40
3668 4198 8.045507 TCTTCTACATGATTTGAGCTCAGAATT 58.954 33.333 17.43 0.00 0.00 2.17
3669 4199 8.571461 TTCTACATGATTTGAGCTCAGAATTT 57.429 30.769 17.43 8.70 0.00 1.82
3670 4200 7.982224 TCTACATGATTTGAGCTCAGAATTTG 58.018 34.615 17.43 18.90 0.00 2.32
3671 4201 5.408356 ACATGATTTGAGCTCAGAATTTGC 58.592 37.500 17.43 8.59 0.00 3.68
3672 4202 5.185249 ACATGATTTGAGCTCAGAATTTGCT 59.815 36.000 17.43 0.00 40.02 3.91
3673 4203 5.717078 TGATTTGAGCTCAGAATTTGCTT 57.283 34.783 17.43 0.00 37.16 3.91
3674 4204 6.092955 TGATTTGAGCTCAGAATTTGCTTT 57.907 33.333 17.43 0.00 37.16 3.51
3675 4205 5.924254 TGATTTGAGCTCAGAATTTGCTTTG 59.076 36.000 17.43 0.00 37.16 2.77
3676 4206 5.518848 TTTGAGCTCAGAATTTGCTTTGA 57.481 34.783 17.43 0.00 37.16 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.108207 CATAGCCCTGCCTCCTCTTG 59.892 60.000 0.00 0.00 0.00 3.02
4 5 1.639635 CCAACATAGCCCTGCCTCCT 61.640 60.000 0.00 0.00 0.00 3.69
5 6 1.152881 CCAACATAGCCCTGCCTCC 60.153 63.158 0.00 0.00 0.00 4.30
7 8 0.257039 CTTCCAACATAGCCCTGCCT 59.743 55.000 0.00 0.00 0.00 4.75
8 9 0.255890 TCTTCCAACATAGCCCTGCC 59.744 55.000 0.00 0.00 0.00 4.85
9 10 1.383523 GTCTTCCAACATAGCCCTGC 58.616 55.000 0.00 0.00 0.00 4.85
10 11 1.561542 AGGTCTTCCAACATAGCCCTG 59.438 52.381 0.00 0.00 35.89 4.45
11 12 1.972588 AGGTCTTCCAACATAGCCCT 58.027 50.000 0.00 0.00 35.89 5.19
12 13 3.926058 TTAGGTCTTCCAACATAGCCC 57.074 47.619 0.00 0.00 35.89 5.19
13 14 8.465273 AAATATTTAGGTCTTCCAACATAGCC 57.535 34.615 0.00 0.00 35.89 3.93
14 15 9.736023 CAAAATATTTAGGTCTTCCAACATAGC 57.264 33.333 0.01 0.00 35.89 2.97
17 18 8.458843 CGTCAAAATATTTAGGTCTTCCAACAT 58.541 33.333 0.01 0.00 35.89 2.71
18 19 7.662258 TCGTCAAAATATTTAGGTCTTCCAACA 59.338 33.333 0.01 0.00 35.89 3.33
19 20 8.036273 TCGTCAAAATATTTAGGTCTTCCAAC 57.964 34.615 0.01 0.00 35.89 3.77
20 21 8.624367 TTCGTCAAAATATTTAGGTCTTCCAA 57.376 30.769 0.01 0.00 35.89 3.53
21 22 8.624367 TTTCGTCAAAATATTTAGGTCTTCCA 57.376 30.769 0.01 0.00 35.89 3.53
22 23 8.182227 CCTTTCGTCAAAATATTTAGGTCTTCC 58.818 37.037 0.01 0.00 0.00 3.46
23 24 7.696872 GCCTTTCGTCAAAATATTTAGGTCTTC 59.303 37.037 0.01 0.00 0.00 2.87
24 25 7.362660 GGCCTTTCGTCAAAATATTTAGGTCTT 60.363 37.037 0.01 0.00 0.00 3.01
25 26 6.095021 GGCCTTTCGTCAAAATATTTAGGTCT 59.905 38.462 0.01 0.00 0.00 3.85
26 27 6.263344 GGCCTTTCGTCAAAATATTTAGGTC 58.737 40.000 0.01 0.56 0.00 3.85
27 28 5.126545 GGGCCTTTCGTCAAAATATTTAGGT 59.873 40.000 0.84 0.00 0.00 3.08
28 29 5.359860 AGGGCCTTTCGTCAAAATATTTAGG 59.640 40.000 0.00 4.01 0.00 2.69
29 30 6.451064 AGGGCCTTTCGTCAAAATATTTAG 57.549 37.500 0.00 0.00 0.00 1.85
30 31 5.358725 GGAGGGCCTTTCGTCAAAATATTTA 59.641 40.000 7.89 0.00 0.00 1.40
31 32 4.159693 GGAGGGCCTTTCGTCAAAATATTT 59.840 41.667 7.89 0.00 0.00 1.40
32 33 3.699538 GGAGGGCCTTTCGTCAAAATATT 59.300 43.478 7.89 0.00 0.00 1.28
33 34 3.288092 GGAGGGCCTTTCGTCAAAATAT 58.712 45.455 7.89 0.00 0.00 1.28
34 35 2.040545 TGGAGGGCCTTTCGTCAAAATA 59.959 45.455 7.89 0.00 34.31 1.40
35 36 1.203001 TGGAGGGCCTTTCGTCAAAAT 60.203 47.619 7.89 0.00 34.31 1.82
36 37 0.183971 TGGAGGGCCTTTCGTCAAAA 59.816 50.000 7.89 0.00 34.31 2.44
37 38 0.183971 TTGGAGGGCCTTTCGTCAAA 59.816 50.000 7.89 0.00 34.31 2.69
38 39 0.536460 GTTGGAGGGCCTTTCGTCAA 60.536 55.000 7.89 5.36 34.31 3.18
39 40 1.072505 GTTGGAGGGCCTTTCGTCA 59.927 57.895 7.89 0.00 34.31 4.35
42 43 2.122783 TTATGTTGGAGGGCCTTTCG 57.877 50.000 7.89 0.00 34.31 3.46
54 55 7.516481 CAGTCTGAACTCTGAACATTATGTTG 58.484 38.462 15.83 3.58 35.42 3.33
55 56 6.148480 GCAGTCTGAACTCTGAACATTATGTT 59.852 38.462 10.64 10.64 37.11 2.71
115 117 9.790344 AGGAGAAATCATCTATTCCATTTAGTG 57.210 33.333 0.00 0.00 38.96 2.74
171 176 8.842358 ATTCAAACATTGCTCAAGAATTCAAT 57.158 26.923 8.44 0.00 0.00 2.57
267 272 3.011821 ACATGAGAGGGTCACTTAGAGGA 59.988 47.826 0.00 0.00 38.28 3.71
268 273 3.131933 CACATGAGAGGGTCACTTAGAGG 59.868 52.174 0.00 0.00 38.28 3.69
269 274 3.766591 ACACATGAGAGGGTCACTTAGAG 59.233 47.826 0.00 0.00 38.28 2.43
271 276 4.440802 GCTACACATGAGAGGGTCACTTAG 60.441 50.000 0.00 0.00 38.28 2.18
272 277 3.447586 GCTACACATGAGAGGGTCACTTA 59.552 47.826 0.00 0.00 38.28 2.24
274 279 1.827969 GCTACACATGAGAGGGTCACT 59.172 52.381 0.00 0.00 38.28 3.41
275 280 1.550524 TGCTACACATGAGAGGGTCAC 59.449 52.381 0.00 0.00 38.28 3.67
276 281 1.937191 TGCTACACATGAGAGGGTCA 58.063 50.000 0.00 0.00 40.38 4.02
286 291 2.636830 GTTCTCAGCCATGCTACACAT 58.363 47.619 0.00 0.00 36.40 3.21
291 296 0.913934 TGGGGTTCTCAGCCATGCTA 60.914 55.000 0.00 0.00 43.12 3.49
329 334 8.896722 ATTATATTACGGGACAGAGGAAGTAT 57.103 34.615 0.00 0.00 0.00 2.12
330 335 9.986157 ATATTATATTACGGGACAGAGGAAGTA 57.014 33.333 0.00 0.00 0.00 2.24
331 336 8.750298 CATATTATATTACGGGACAGAGGAAGT 58.250 37.037 0.00 0.00 0.00 3.01
332 337 7.707035 GCATATTATATTACGGGACAGAGGAAG 59.293 40.741 0.00 0.00 0.00 3.46
333 338 7.364408 GGCATATTATATTACGGGACAGAGGAA 60.364 40.741 0.00 0.00 0.00 3.36
334 339 6.097839 GGCATATTATATTACGGGACAGAGGA 59.902 42.308 0.00 0.00 0.00 3.71
335 340 6.127168 TGGCATATTATATTACGGGACAGAGG 60.127 42.308 0.00 0.00 0.00 3.69
336 341 6.757010 GTGGCATATTATATTACGGGACAGAG 59.243 42.308 0.00 0.00 0.00 3.35
337 342 6.626402 CGTGGCATATTATATTACGGGACAGA 60.626 42.308 0.00 0.00 0.00 3.41
338 343 5.518847 CGTGGCATATTATATTACGGGACAG 59.481 44.000 0.00 0.00 0.00 3.51
339 344 5.047164 ACGTGGCATATTATATTACGGGACA 60.047 40.000 13.84 0.00 34.69 4.02
340 345 5.413499 ACGTGGCATATTATATTACGGGAC 58.587 41.667 13.84 0.00 34.69 4.46
341 346 5.664294 ACGTGGCATATTATATTACGGGA 57.336 39.130 13.84 0.00 34.69 5.14
342 347 8.428186 AATAACGTGGCATATTATATTACGGG 57.572 34.615 13.84 0.00 34.69 5.28
354 359 7.880713 ACATATTGGATGTAATAACGTGGCATA 59.119 33.333 0.00 0.00 0.00 3.14
355 360 6.714810 ACATATTGGATGTAATAACGTGGCAT 59.285 34.615 0.00 0.00 0.00 4.40
357 362 6.370593 CACATATTGGATGTAATAACGTGGC 58.629 40.000 0.00 0.00 32.25 5.01
401 430 0.768221 ACACCCCAGAGAAGGCTTCA 60.768 55.000 27.70 0.00 0.00 3.02
408 437 3.117701 TGAAACAATCACACCCCAGAGAA 60.118 43.478 0.00 0.00 31.50 2.87
412 441 2.586425 ACTGAAACAATCACACCCCAG 58.414 47.619 0.00 0.00 33.47 4.45
432 461 6.777091 CCATATCAAAGTCAATGGGGATGTTA 59.223 38.462 0.00 0.00 36.12 2.41
445 474 8.492673 TCACTGTCAAATACCATATCAAAGTC 57.507 34.615 0.00 0.00 0.00 3.01
481 510 6.460399 CGAAGGGTGGATCAACTTGTTAAAAA 60.460 38.462 0.00 0.00 0.00 1.94
482 511 5.009210 CGAAGGGTGGATCAACTTGTTAAAA 59.991 40.000 0.00 0.00 0.00 1.52
485 514 3.071892 ACGAAGGGTGGATCAACTTGTTA 59.928 43.478 0.00 0.00 0.00 2.41
486 515 2.158667 ACGAAGGGTGGATCAACTTGTT 60.159 45.455 0.00 0.00 0.00 2.83
487 516 1.420138 ACGAAGGGTGGATCAACTTGT 59.580 47.619 0.00 0.00 0.00 3.16
488 517 2.076863 GACGAAGGGTGGATCAACTTG 58.923 52.381 0.00 0.00 0.00 3.16
490 519 0.246635 CGACGAAGGGTGGATCAACT 59.753 55.000 0.00 0.00 0.00 3.16
491 520 0.245539 TCGACGAAGGGTGGATCAAC 59.754 55.000 0.00 0.00 0.00 3.18
493 522 0.970640 TTTCGACGAAGGGTGGATCA 59.029 50.000 10.61 0.00 33.12 2.92
494 523 2.311124 ATTTCGACGAAGGGTGGATC 57.689 50.000 10.61 0.00 33.12 3.36
504 536 8.022550 TGTCAGTTATTGTAGTTATTTCGACGA 58.977 33.333 0.00 0.00 0.00 4.20
536 568 2.426738 CTGAACACCACTTGCTCCAAAA 59.573 45.455 0.00 0.00 0.00 2.44
580 613 0.322366 AAGCAAGCTTCCAGGCTCTC 60.322 55.000 9.23 0.00 42.24 3.20
583 616 1.605738 CCAAGCAAGCTTCCAGGCT 60.606 57.895 3.97 0.00 45.30 4.58
584 617 0.969409 ATCCAAGCAAGCTTCCAGGC 60.969 55.000 3.97 0.00 33.42 4.85
585 618 2.295885 CTATCCAAGCAAGCTTCCAGG 58.704 52.381 3.97 3.92 33.42 4.45
586 619 2.996631 ACTATCCAAGCAAGCTTCCAG 58.003 47.619 3.97 2.72 33.42 3.86
587 620 3.084039 CAACTATCCAAGCAAGCTTCCA 58.916 45.455 3.97 0.00 33.42 3.53
588 621 2.424956 CCAACTATCCAAGCAAGCTTCC 59.575 50.000 3.97 0.00 33.42 3.46
589 622 3.347216 TCCAACTATCCAAGCAAGCTTC 58.653 45.455 3.97 0.00 33.42 3.86
590 623 3.439857 TCCAACTATCCAAGCAAGCTT 57.560 42.857 0.59 0.59 36.60 3.74
591 624 3.659183 ATCCAACTATCCAAGCAAGCT 57.341 42.857 0.00 0.00 0.00 3.74
592 625 5.412904 GGTATATCCAACTATCCAAGCAAGC 59.587 44.000 0.00 0.00 35.97 4.01
593 626 5.940470 GGGTATATCCAACTATCCAAGCAAG 59.060 44.000 0.00 0.00 38.11 4.01
594 627 5.371176 TGGGTATATCCAACTATCCAAGCAA 59.629 40.000 0.91 0.00 38.11 3.91
595 628 4.910913 TGGGTATATCCAACTATCCAAGCA 59.089 41.667 0.91 0.00 38.11 3.91
596 629 5.246307 GTGGGTATATCCAACTATCCAAGC 58.754 45.833 6.21 0.00 38.72 4.01
605 638 5.546621 TCAAGCTAGTGGGTATATCCAAC 57.453 43.478 6.21 1.38 40.39 3.77
606 639 5.903010 TCTTCAAGCTAGTGGGTATATCCAA 59.097 40.000 6.21 0.00 38.72 3.53
607 640 5.304614 GTCTTCAAGCTAGTGGGTATATCCA 59.695 44.000 0.00 0.00 38.11 3.41
608 641 5.279556 GGTCTTCAAGCTAGTGGGTATATCC 60.280 48.000 0.00 0.00 0.00 2.59
609 642 5.279556 GGGTCTTCAAGCTAGTGGGTATATC 60.280 48.000 0.00 0.00 0.00 1.63
610 643 4.593634 GGGTCTTCAAGCTAGTGGGTATAT 59.406 45.833 0.00 0.00 0.00 0.86
611 644 3.965347 GGGTCTTCAAGCTAGTGGGTATA 59.035 47.826 0.00 0.00 0.00 1.47
612 645 2.772515 GGGTCTTCAAGCTAGTGGGTAT 59.227 50.000 0.00 0.00 0.00 2.73
613 646 2.185387 GGGTCTTCAAGCTAGTGGGTA 58.815 52.381 0.00 0.00 0.00 3.69
614 647 0.984995 GGGTCTTCAAGCTAGTGGGT 59.015 55.000 0.00 0.00 0.00 4.51
615 648 0.984230 TGGGTCTTCAAGCTAGTGGG 59.016 55.000 0.00 0.00 0.00 4.61
616 649 2.859165 TTGGGTCTTCAAGCTAGTGG 57.141 50.000 0.00 0.00 0.00 4.00
617 650 5.355350 CCTTAATTGGGTCTTCAAGCTAGTG 59.645 44.000 0.00 0.00 0.00 2.74
618 651 5.501156 CCTTAATTGGGTCTTCAAGCTAGT 58.499 41.667 0.00 0.00 0.00 2.57
619 652 4.336713 GCCTTAATTGGGTCTTCAAGCTAG 59.663 45.833 0.00 0.00 0.00 3.42
620 653 4.270008 GCCTTAATTGGGTCTTCAAGCTA 58.730 43.478 0.00 0.00 0.00 3.32
621 654 3.092301 GCCTTAATTGGGTCTTCAAGCT 58.908 45.455 0.00 0.00 0.00 3.74
622 655 2.166459 GGCCTTAATTGGGTCTTCAAGC 59.834 50.000 0.00 0.00 0.00 4.01
623 656 2.760650 GGGCCTTAATTGGGTCTTCAAG 59.239 50.000 0.84 0.00 0.00 3.02
624 657 2.381961 AGGGCCTTAATTGGGTCTTCAA 59.618 45.455 0.00 0.00 0.00 2.69
625 658 2.000048 AGGGCCTTAATTGGGTCTTCA 59.000 47.619 0.00 0.00 0.00 3.02
626 659 2.291605 ACAGGGCCTTAATTGGGTCTTC 60.292 50.000 1.32 0.00 0.00 2.87
627 660 1.716503 ACAGGGCCTTAATTGGGTCTT 59.283 47.619 1.32 0.00 0.00 3.01
628 661 1.382914 ACAGGGCCTTAATTGGGTCT 58.617 50.000 1.32 0.00 0.00 3.85
629 662 2.100197 GAACAGGGCCTTAATTGGGTC 58.900 52.381 1.32 0.00 0.00 4.46
630 663 1.615919 CGAACAGGGCCTTAATTGGGT 60.616 52.381 1.32 0.00 0.00 4.51
631 664 1.102978 CGAACAGGGCCTTAATTGGG 58.897 55.000 1.32 0.00 0.00 4.12
632 665 1.102978 CCGAACAGGGCCTTAATTGG 58.897 55.000 1.32 2.19 35.97 3.16
633 666 2.122783 TCCGAACAGGGCCTTAATTG 57.877 50.000 1.32 0.00 41.52 2.32
634 667 2.891191 TTCCGAACAGGGCCTTAATT 57.109 45.000 1.32 0.00 41.52 1.40
635 668 2.745152 CGATTCCGAACAGGGCCTTAAT 60.745 50.000 1.32 0.00 41.52 1.40
636 669 1.406341 CGATTCCGAACAGGGCCTTAA 60.406 52.381 1.32 0.00 41.52 1.85
637 670 0.177141 CGATTCCGAACAGGGCCTTA 59.823 55.000 1.32 0.00 41.52 2.69
638 671 1.078426 CGATTCCGAACAGGGCCTT 60.078 57.895 1.32 0.00 41.52 4.35
639 672 2.584608 CGATTCCGAACAGGGCCT 59.415 61.111 0.00 0.00 41.52 5.19
640 673 3.202706 GCGATTCCGAACAGGGCC 61.203 66.667 0.00 0.00 41.52 5.80
641 674 3.564027 CGCGATTCCGAACAGGGC 61.564 66.667 0.00 0.00 41.52 5.19
642 675 3.564027 GCGCGATTCCGAACAGGG 61.564 66.667 12.10 0.00 41.52 4.45
643 676 3.564027 GGCGCGATTCCGAACAGG 61.564 66.667 12.10 0.00 42.97 4.00
684 717 3.052082 CAACTGCAGCTCCACCCG 61.052 66.667 15.27 0.00 0.00 5.28
685 718 0.823356 TTTCAACTGCAGCTCCACCC 60.823 55.000 15.27 0.00 0.00 4.61
686 719 1.032014 TTTTCAACTGCAGCTCCACC 58.968 50.000 15.27 0.00 0.00 4.61
687 720 2.294233 TGATTTTCAACTGCAGCTCCAC 59.706 45.455 15.27 0.00 0.00 4.02
688 721 2.294233 GTGATTTTCAACTGCAGCTCCA 59.706 45.455 15.27 0.00 0.00 3.86
689 722 2.666619 CGTGATTTTCAACTGCAGCTCC 60.667 50.000 15.27 0.00 0.00 4.70
690 723 2.578495 CGTGATTTTCAACTGCAGCTC 58.422 47.619 15.27 0.21 0.00 4.09
691 724 1.267806 CCGTGATTTTCAACTGCAGCT 59.732 47.619 15.27 0.00 0.00 4.24
692 725 1.266718 TCCGTGATTTTCAACTGCAGC 59.733 47.619 15.27 0.00 0.00 5.25
693 726 2.666619 GCTCCGTGATTTTCAACTGCAG 60.667 50.000 13.48 13.48 0.00 4.41
694 727 1.266718 GCTCCGTGATTTTCAACTGCA 59.733 47.619 0.00 0.00 0.00 4.41
695 728 1.537202 AGCTCCGTGATTTTCAACTGC 59.463 47.619 0.00 0.00 0.00 4.40
696 729 2.666619 GCAGCTCCGTGATTTTCAACTG 60.667 50.000 0.00 0.00 0.00 3.16
697 730 1.537202 GCAGCTCCGTGATTTTCAACT 59.463 47.619 0.00 0.00 0.00 3.16
698 731 1.266718 TGCAGCTCCGTGATTTTCAAC 59.733 47.619 0.00 0.00 0.00 3.18
699 732 1.536766 CTGCAGCTCCGTGATTTTCAA 59.463 47.619 0.00 0.00 0.00 2.69
700 733 1.159285 CTGCAGCTCCGTGATTTTCA 58.841 50.000 0.00 0.00 0.00 2.69
701 734 1.160137 ACTGCAGCTCCGTGATTTTC 58.840 50.000 15.27 0.00 0.00 2.29
702 735 1.609208 AACTGCAGCTCCGTGATTTT 58.391 45.000 15.27 0.00 0.00 1.82
703 736 1.537202 GAAACTGCAGCTCCGTGATTT 59.463 47.619 15.27 3.83 0.00 2.17
704 737 1.160137 GAAACTGCAGCTCCGTGATT 58.840 50.000 15.27 0.00 0.00 2.57
705 738 0.674895 GGAAACTGCAGCTCCGTGAT 60.675 55.000 15.27 0.00 0.00 3.06
706 739 1.301716 GGAAACTGCAGCTCCGTGA 60.302 57.895 15.27 0.00 0.00 4.35
707 740 1.294659 GAGGAAACTGCAGCTCCGTG 61.295 60.000 23.16 0.00 44.43 4.94
708 741 1.004440 GAGGAAACTGCAGCTCCGT 60.004 57.895 23.16 14.84 44.43 4.69
709 742 2.097038 CGAGGAAACTGCAGCTCCG 61.097 63.158 23.16 12.82 44.43 4.63
710 743 2.394563 GCGAGGAAACTGCAGCTCC 61.395 63.158 22.39 22.39 44.43 4.70
711 744 1.357991 GAGCGAGGAAACTGCAGCTC 61.358 60.000 15.27 11.21 45.36 4.09
712 745 1.375268 GAGCGAGGAAACTGCAGCT 60.375 57.895 15.27 2.45 44.43 4.24
713 746 2.394563 GGAGCGAGGAAACTGCAGC 61.395 63.158 15.27 0.00 44.43 5.25
714 747 2.097038 CGGAGCGAGGAAACTGCAG 61.097 63.158 13.48 13.48 44.43 4.41
715 748 2.048222 CGGAGCGAGGAAACTGCA 60.048 61.111 0.00 0.00 44.43 4.41
716 749 2.048127 ACGGAGCGAGGAAACTGC 60.048 61.111 0.00 0.00 44.43 4.40
717 750 1.738099 CCACGGAGCGAGGAAACTG 60.738 63.158 0.00 0.00 44.43 3.16
718 751 1.906824 TCCACGGAGCGAGGAAACT 60.907 57.895 0.00 0.00 42.90 2.66
719 752 2.654877 TCCACGGAGCGAGGAAAC 59.345 61.111 0.00 0.00 42.90 2.78
723 756 2.107141 GGAATCCACGGAGCGAGG 59.893 66.667 0.00 0.00 38.87 4.63
724 757 2.278857 CGGAATCCACGGAGCGAG 60.279 66.667 0.00 0.00 0.00 5.03
731 764 2.186903 CCACTCCCGGAATCCACG 59.813 66.667 0.73 0.00 0.00 4.94
732 765 2.298661 ACCCACTCCCGGAATCCAC 61.299 63.158 0.73 0.00 0.00 4.02
733 766 2.124085 ACCCACTCCCGGAATCCA 59.876 61.111 0.73 0.00 0.00 3.41
734 767 2.590092 CACCCACTCCCGGAATCC 59.410 66.667 0.73 0.00 0.00 3.01
735 768 2.590092 CCACCCACTCCCGGAATC 59.410 66.667 0.73 0.00 0.00 2.52
736 769 3.015145 CCCACCCACTCCCGGAAT 61.015 66.667 0.73 0.00 0.00 3.01
737 770 4.585216 ACCCACCCACTCCCGGAA 62.585 66.667 0.73 0.00 0.00 4.30
738 771 4.585216 AACCCACCCACTCCCGGA 62.585 66.667 0.73 0.00 0.00 5.14
739 772 4.344865 CAACCCACCCACTCCCGG 62.345 72.222 0.00 0.00 0.00 5.73
741 774 4.678743 GGCAACCCACCCACTCCC 62.679 72.222 0.00 0.00 0.00 4.30
743 776 2.969300 TTTCGGCAACCCACCCACTC 62.969 60.000 0.00 0.00 0.00 3.51
744 777 3.063197 TTTCGGCAACCCACCCACT 62.063 57.895 0.00 0.00 0.00 4.00
745 778 2.519780 TTTCGGCAACCCACCCAC 60.520 61.111 0.00 0.00 0.00 4.61
746 779 2.519780 GTTTCGGCAACCCACCCA 60.520 61.111 0.00 0.00 0.00 4.51
747 780 3.666253 CGTTTCGGCAACCCACCC 61.666 66.667 0.00 0.00 30.65 4.61
748 781 2.483197 AACGTTTCGGCAACCCACC 61.483 57.895 0.00 0.00 30.65 4.61
749 782 1.298788 CAACGTTTCGGCAACCCAC 60.299 57.895 0.00 0.00 30.65 4.61
750 783 3.111939 CAACGTTTCGGCAACCCA 58.888 55.556 0.00 0.00 30.65 4.51
751 784 2.354188 GCAACGTTTCGGCAACCC 60.354 61.111 0.00 0.00 30.65 4.11
752 785 1.657181 CTGCAACGTTTCGGCAACC 60.657 57.895 12.19 0.00 37.06 3.77
753 786 1.063488 ACTGCAACGTTTCGGCAAC 59.937 52.632 12.19 0.00 37.06 4.17
754 787 1.063327 CACTGCAACGTTTCGGCAA 59.937 52.632 12.19 0.00 37.06 4.52
755 788 1.649390 AACACTGCAACGTTTCGGCA 61.649 50.000 6.68 8.98 35.96 5.69
756 789 0.305313 TAACACTGCAACGTTTCGGC 59.695 50.000 6.68 4.41 0.00 5.54
757 790 1.595794 AGTAACACTGCAACGTTTCGG 59.404 47.619 5.15 5.15 0.00 4.30
758 791 4.384846 AGATAGTAACACTGCAACGTTTCG 59.615 41.667 0.00 0.00 0.00 3.46
759 792 5.840940 AGATAGTAACACTGCAACGTTTC 57.159 39.130 0.00 0.00 0.00 2.78
760 793 6.684686 TCTAGATAGTAACACTGCAACGTTT 58.315 36.000 0.00 0.00 0.00 3.60
761 794 6.263516 TCTAGATAGTAACACTGCAACGTT 57.736 37.500 0.00 0.00 0.00 3.99
762 795 5.163642 CCTCTAGATAGTAACACTGCAACGT 60.164 44.000 0.00 0.00 0.00 3.99
763 796 5.066117 TCCTCTAGATAGTAACACTGCAACG 59.934 44.000 0.00 0.00 0.00 4.10
764 797 6.452494 TCCTCTAGATAGTAACACTGCAAC 57.548 41.667 0.00 0.00 0.00 4.17
765 798 5.594725 CCTCCTCTAGATAGTAACACTGCAA 59.405 44.000 0.00 0.00 0.00 4.08
766 799 5.133941 CCTCCTCTAGATAGTAACACTGCA 58.866 45.833 0.00 0.00 0.00 4.41
767 800 4.521256 CCCTCCTCTAGATAGTAACACTGC 59.479 50.000 0.00 0.00 0.00 4.40
768 801 5.942961 TCCCTCCTCTAGATAGTAACACTG 58.057 45.833 0.00 0.00 0.00 3.66
769 802 6.390461 TCTTCCCTCCTCTAGATAGTAACACT 59.610 42.308 0.00 0.00 0.00 3.55
770 803 6.603224 TCTTCCCTCCTCTAGATAGTAACAC 58.397 44.000 0.00 0.00 0.00 3.32
771 804 6.843473 TCTTCCCTCCTCTAGATAGTAACA 57.157 41.667 0.00 0.00 0.00 2.41
772 805 6.661805 CCATCTTCCCTCCTCTAGATAGTAAC 59.338 46.154 0.00 0.00 0.00 2.50
773 806 6.566870 TCCATCTTCCCTCCTCTAGATAGTAA 59.433 42.308 0.00 0.00 0.00 2.24
774 807 6.099139 TCCATCTTCCCTCCTCTAGATAGTA 58.901 44.000 0.00 0.00 0.00 1.82
775 808 4.923236 TCCATCTTCCCTCCTCTAGATAGT 59.077 45.833 0.00 0.00 0.00 2.12
776 809 5.528600 TCCATCTTCCCTCCTCTAGATAG 57.471 47.826 0.00 0.00 0.00 2.08
777 810 5.950320 TTCCATCTTCCCTCCTCTAGATA 57.050 43.478 0.00 0.00 0.00 1.98
778 811 4.841813 TTCCATCTTCCCTCCTCTAGAT 57.158 45.455 0.00 0.00 0.00 1.98
779 812 4.626942 TTTCCATCTTCCCTCCTCTAGA 57.373 45.455 0.00 0.00 0.00 2.43
780 813 5.700402 TTTTTCCATCTTCCCTCCTCTAG 57.300 43.478 0.00 0.00 0.00 2.43
781 814 7.954539 ATATTTTTCCATCTTCCCTCCTCTA 57.045 36.000 0.00 0.00 0.00 2.43
782 815 6.855375 ATATTTTTCCATCTTCCCTCCTCT 57.145 37.500 0.00 0.00 0.00 3.69
783 816 7.904558 AAATATTTTTCCATCTTCCCTCCTC 57.095 36.000 0.00 0.00 0.00 3.71
784 817 9.593565 GATAAATATTTTTCCATCTTCCCTCCT 57.406 33.333 5.91 0.00 0.00 3.69
785 818 8.807118 GGATAAATATTTTTCCATCTTCCCTCC 58.193 37.037 24.62 2.23 37.94 4.30
786 819 8.807118 GGGATAAATATTTTTCCATCTTCCCTC 58.193 37.037 28.21 11.92 39.23 4.30
787 820 7.734865 GGGGATAAATATTTTTCCATCTTCCCT 59.265 37.037 28.21 0.00 39.23 4.20
788 821 7.038302 GGGGGATAAATATTTTTCCATCTTCCC 60.038 40.741 28.21 24.76 39.23 3.97
789 822 7.907389 GGGGGATAAATATTTTTCCATCTTCC 58.093 38.462 28.21 21.55 39.23 3.46
898 935 7.896811 TGTAGAGAAAGAGTATCAACATGTGT 58.103 34.615 0.00 0.00 37.82 3.72
908 945 9.523168 GGTGGACTATATGTAGAGAAAGAGTAT 57.477 37.037 3.17 0.00 0.00 2.12
909 946 7.943447 GGGTGGACTATATGTAGAGAAAGAGTA 59.057 40.741 3.17 0.00 0.00 2.59
910 947 6.778559 GGGTGGACTATATGTAGAGAAAGAGT 59.221 42.308 3.17 0.00 0.00 3.24
911 948 6.209788 GGGGTGGACTATATGTAGAGAAAGAG 59.790 46.154 3.17 0.00 0.00 2.85
912 949 6.075984 GGGGTGGACTATATGTAGAGAAAGA 58.924 44.000 3.17 0.00 0.00 2.52
913 950 5.839063 TGGGGTGGACTATATGTAGAGAAAG 59.161 44.000 3.17 0.00 0.00 2.62
914 951 5.784023 TGGGGTGGACTATATGTAGAGAAA 58.216 41.667 3.17 0.00 0.00 2.52
915 952 5.412617 TGGGGTGGACTATATGTAGAGAA 57.587 43.478 3.17 0.00 0.00 2.87
916 953 5.616975 ATGGGGTGGACTATATGTAGAGA 57.383 43.478 3.17 0.00 0.00 3.10
917 954 6.724441 TGTAATGGGGTGGACTATATGTAGAG 59.276 42.308 3.17 0.00 0.00 2.43
918 955 6.495872 GTGTAATGGGGTGGACTATATGTAGA 59.504 42.308 3.17 0.00 0.00 2.59
958 1372 3.579709 CCGTGGAATTCTCTATCGATGG 58.420 50.000 8.54 5.03 0.00 3.51
978 1392 2.123033 GCTCCTCCCTCTCCTCCC 60.123 72.222 0.00 0.00 0.00 4.30
982 1396 1.344191 ATTGCAGCTCCTCCCTCTCC 61.344 60.000 0.00 0.00 0.00 3.71
1014 1437 2.045536 CCCAGCAGCTTCACCTCC 60.046 66.667 0.00 0.00 0.00 4.30
1102 1525 2.482333 CGGCGAAGTCCTCCTCGAT 61.482 63.158 0.00 0.00 0.00 3.59
1104 1527 3.132139 TCGGCGAAGTCCTCCTCG 61.132 66.667 7.35 0.00 0.00 4.63
1225 1648 1.444553 CACAGAAGGCCTCGTCGAC 60.445 63.158 5.23 5.18 0.00 4.20
1359 1788 3.827898 GCCCTCTCCTCGTCCGTG 61.828 72.222 0.00 0.00 0.00 4.94
1445 1874 2.782925 AGTGCCATATAACCCACATGGA 59.217 45.455 0.00 0.00 41.53 3.41
1577 2006 4.070552 GGCGGAGGAGAAGTGCGT 62.071 66.667 0.00 0.00 0.00 5.24
1653 2082 0.984109 CTGGCAAAAATAAGCGCGTG 59.016 50.000 8.43 0.00 0.00 5.34
1754 2183 2.262915 GTGGAGAGACGTGGGCTG 59.737 66.667 0.00 0.00 0.00 4.85
1806 2235 0.975556 TCTGTTCATGGCGGCTAGGA 60.976 55.000 11.43 0.00 0.00 2.94
1884 2313 2.668632 GTGGCAGACGGGATGGAA 59.331 61.111 0.00 0.00 0.00 3.53
1896 2325 3.285982 TCGACCGTGTACGTGGCA 61.286 61.111 0.00 0.00 37.74 4.92
2278 2708 5.221185 GCATGGCATTGACTAAGTTGATGAT 60.221 40.000 0.00 0.00 0.00 2.45
2334 2764 8.034804 GTCCATGTTGAGTAAATAGGCAATTTT 58.965 33.333 2.07 0.00 38.71 1.82
2560 3002 4.742201 GTCCAGCTCGCCGAAGCA 62.742 66.667 10.33 0.00 45.00 3.91
2608 3050 1.664321 CCGGCGTACTCAACTAGCCT 61.664 60.000 6.01 0.00 45.16 4.58
2610 3052 1.226888 CCCGGCGTACTCAACTAGC 60.227 63.158 6.01 0.00 0.00 3.42
2613 3055 2.968206 GTCCCGGCGTACTCAACT 59.032 61.111 6.01 0.00 0.00 3.16
2616 3058 2.438975 ATCGTCCCGGCGTACTCA 60.439 61.111 6.01 0.00 0.00 3.41
2667 3117 3.438087 CAGACCAGGTTTATCAGTTGCTG 59.562 47.826 0.00 0.00 0.00 4.41
2726 3176 3.302480 CCTGAGCGCGTAATTTGATACAC 60.302 47.826 8.43 0.00 0.00 2.90
2727 3177 2.863740 CCTGAGCGCGTAATTTGATACA 59.136 45.455 8.43 0.00 0.00 2.29
2790 3243 5.104151 TGCCATTCATCAAGGGTTCTATGTA 60.104 40.000 0.00 0.00 35.73 2.29
2826 3279 4.775780 AGCATGGTTAATAGTATAGCCCGA 59.224 41.667 0.00 0.00 0.00 5.14
2828 3281 6.301169 AGAGCATGGTTAATAGTATAGCCC 57.699 41.667 0.00 0.00 0.00 5.19
2864 3323 8.458573 TCAACCTTATTTTCTGTTGCTCTTTA 57.541 30.769 0.00 0.00 38.32 1.85
2883 3342 8.924511 TCTCAAATATGACTTTTCTTCAACCT 57.075 30.769 0.00 0.00 0.00 3.50
2884 3343 8.239998 CCTCTCAAATATGACTTTTCTTCAACC 58.760 37.037 0.00 0.00 0.00 3.77
2885 3344 9.003658 TCCTCTCAAATATGACTTTTCTTCAAC 57.996 33.333 0.00 0.00 0.00 3.18
2886 3345 9.573166 TTCCTCTCAAATATGACTTTTCTTCAA 57.427 29.630 0.00 0.00 0.00 2.69
2902 3361 9.408648 AGTTCTTTTTATGTCTTTCCTCTCAAA 57.591 29.630 0.00 0.00 0.00 2.69
2905 3364 8.499967 GTCAGTTCTTTTTATGTCTTTCCTCTC 58.500 37.037 0.00 0.00 0.00 3.20
2906 3365 7.445707 GGTCAGTTCTTTTTATGTCTTTCCTCT 59.554 37.037 0.00 0.00 0.00 3.69
2926 3385 2.956333 GGCTTTTACTTTGGTGGTCAGT 59.044 45.455 0.00 0.00 0.00 3.41
2927 3386 2.955660 TGGCTTTTACTTTGGTGGTCAG 59.044 45.455 0.00 0.00 0.00 3.51
2928 3387 3.019799 TGGCTTTTACTTTGGTGGTCA 57.980 42.857 0.00 0.00 0.00 4.02
2931 3391 3.574614 CGATTGGCTTTTACTTTGGTGG 58.425 45.455 0.00 0.00 0.00 4.61
2948 3408 3.209410 CAGAGGCTTTATTCTGGCGATT 58.791 45.455 0.00 0.00 37.70 3.34
2953 3413 5.006386 AGAAACACAGAGGCTTTATTCTGG 58.994 41.667 5.78 0.00 43.96 3.86
2963 3423 5.578727 CACATAAGTAGAGAAACACAGAGGC 59.421 44.000 0.00 0.00 0.00 4.70
2964 3424 5.578727 GCACATAAGTAGAGAAACACAGAGG 59.421 44.000 0.00 0.00 0.00 3.69
2979 3439 5.555017 CTTAGCATAGATGGGCACATAAGT 58.445 41.667 0.00 0.00 37.47 2.24
2983 3443 2.374504 AGCTTAGCATAGATGGGCACAT 59.625 45.455 0.00 0.00 40.85 3.21
3012 3472 5.087323 TCAAGAACTGACCAACTAGAGGAT 58.913 41.667 11.98 0.00 0.00 3.24
3032 3492 3.454447 TGTTGGTGGACTCTTTCTCTCAA 59.546 43.478 0.00 0.00 0.00 3.02
3071 3578 4.631813 AGAAACGCACAGGCTTTATTCTAG 59.368 41.667 0.00 0.00 38.10 2.43
3072 3579 4.575885 AGAAACGCACAGGCTTTATTCTA 58.424 39.130 0.00 0.00 38.10 2.10
3081 3588 1.510480 AAGCAGAGAAACGCACAGGC 61.510 55.000 0.00 0.00 0.00 4.85
3082 3589 0.514691 GAAGCAGAGAAACGCACAGG 59.485 55.000 0.00 0.00 0.00 4.00
3084 3591 1.220529 CAGAAGCAGAGAAACGCACA 58.779 50.000 0.00 0.00 0.00 4.57
3088 3596 1.795286 GGACACAGAAGCAGAGAAACG 59.205 52.381 0.00 0.00 0.00 3.60
3102 3610 2.100197 AGCTTAGCATAGACGGACACA 58.900 47.619 7.07 0.00 0.00 3.72
3106 3614 3.952323 ACAACTAGCTTAGCATAGACGGA 59.048 43.478 7.07 0.00 0.00 4.69
3109 3617 4.922719 ACGACAACTAGCTTAGCATAGAC 58.077 43.478 7.07 1.27 0.00 2.59
3149 3657 5.535406 ACTCTTTTACGTCTTTCCTCTCAGA 59.465 40.000 0.00 0.00 0.00 3.27
3164 3672 4.124970 ACTTTGGTGGTCGACTCTTTTAC 58.875 43.478 16.46 5.46 0.00 2.01
3211 3720 0.032130 AGAAGCAGAGAAACGCACGA 59.968 50.000 0.00 0.00 0.00 4.35
3233 3742 4.656112 ACAACTAGCTTAGCATAGATGGGT 59.344 41.667 7.07 2.50 0.00 4.51
3265 3774 4.618920 TTCTCTTAGGAACTGACCAACC 57.381 45.455 0.00 0.00 41.52 3.77
3294 3803 9.848172 GTTGCAAAATTTACAACATGACTAAAG 57.152 29.630 22.60 0.00 42.50 1.85
3309 3818 9.816354 AACACAAGTCTTATAGTTGCAAAATTT 57.184 25.926 0.00 0.00 41.51 1.82
3312 3821 8.073768 GCTAACACAAGTCTTATAGTTGCAAAA 58.926 33.333 0.00 0.00 41.51 2.44
3313 3822 7.444183 AGCTAACACAAGTCTTATAGTTGCAAA 59.556 33.333 0.00 0.00 41.51 3.68
3314 3823 6.934645 AGCTAACACAAGTCTTATAGTTGCAA 59.065 34.615 0.00 0.00 41.51 4.08
3321 3831 7.561251 TGGCAATAGCTAACACAAGTCTTATA 58.439 34.615 0.00 0.00 41.70 0.98
3343 3853 1.428869 ACTCCACCTCTGGATATGGC 58.571 55.000 0.00 0.00 46.18 4.40
3346 3856 4.407296 GTCTCAAACTCCACCTCTGGATAT 59.593 45.833 0.00 0.00 46.18 1.63
3353 3863 1.346068 AGCTGTCTCAAACTCCACCTC 59.654 52.381 0.00 0.00 0.00 3.85
3354 3864 1.428869 AGCTGTCTCAAACTCCACCT 58.571 50.000 0.00 0.00 0.00 4.00
3369 3879 9.494479 CAAAAACACATTATGTACATCTAGCTG 57.506 33.333 12.68 6.57 42.31 4.24
3378 3888 6.644592 ACACCATGCAAAAACACATTATGTAC 59.355 34.615 0.00 0.00 42.31 2.90
3381 3891 6.424509 AGAACACCATGCAAAAACACATTATG 59.575 34.615 0.00 0.00 0.00 1.90
3383 3893 5.911752 AGAACACCATGCAAAAACACATTA 58.088 33.333 0.00 0.00 0.00 1.90
3387 3897 4.180057 TCAAGAACACCATGCAAAAACAC 58.820 39.130 0.00 0.00 0.00 3.32
3414 3924 2.814336 GTGGTTGTTTCATGGAGACCTC 59.186 50.000 0.00 0.00 0.00 3.85
3421 3931 1.531739 CCCCGGTGGTTGTTTCATGG 61.532 60.000 0.00 0.00 0.00 3.66
3435 3945 3.343941 TTTCTTGTCTTCATACCCCGG 57.656 47.619 0.00 0.00 0.00 5.73
3437 3947 5.296035 CGGTATTTTCTTGTCTTCATACCCC 59.704 44.000 0.00 0.00 31.60 4.95
3439 3949 5.353123 TGCGGTATTTTCTTGTCTTCATACC 59.647 40.000 0.00 0.00 0.00 2.73
3445 3955 7.094377 ACACATAATGCGGTATTTTCTTGTCTT 60.094 33.333 0.00 0.00 0.00 3.01
3457 3967 2.705730 ACTTGCACACATAATGCGGTA 58.294 42.857 0.00 0.00 46.49 4.02
3460 3970 3.563508 TCAAACTTGCACACATAATGCG 58.436 40.909 0.00 0.00 46.49 4.73
3468 3978 2.992543 TGCTTGTTTCAAACTTGCACAC 59.007 40.909 13.97 0.00 36.19 3.82
3477 3987 3.550820 TGCTCTAGGTGCTTGTTTCAAA 58.449 40.909 9.39 0.00 0.00 2.69
3502 4032 9.344772 TCTTAACTAGGAGCTTAATCTAGAGTG 57.655 37.037 2.23 0.00 35.66 3.51
3507 4037 8.504409 AGACCTCTTAACTAGGAGCTTAATCTA 58.496 37.037 6.18 0.00 37.57 1.98
3540 4070 4.241590 TGTGTCAACTTTGGATGCAATC 57.758 40.909 0.00 0.00 44.55 2.67
3589 4119 9.613428 TGCAACTATAAGCACAAAGATAACTAT 57.387 29.630 0.00 0.00 35.51 2.12
3594 4124 8.737168 ATCTTGCAACTATAAGCACAAAGATA 57.263 30.769 0.00 0.00 41.05 1.98
3600 4130 6.092670 GTGAAGATCTTGCAACTATAAGCACA 59.907 38.462 14.00 0.00 41.05 4.57
3610 4140 5.173774 TCACTTTGTGAAGATCTTGCAAC 57.826 39.130 14.00 8.95 39.78 4.17
3611 4141 6.712095 AGTATCACTTTGTGAAGATCTTGCAA 59.288 34.615 14.00 14.34 45.96 4.08
3612 4142 6.233434 AGTATCACTTTGTGAAGATCTTGCA 58.767 36.000 14.00 8.89 45.96 4.08
3613 4143 6.734104 AGTATCACTTTGTGAAGATCTTGC 57.266 37.500 14.00 6.19 45.96 4.01
3615 4145 8.887717 GCATTAGTATCACTTTGTGAAGATCTT 58.112 33.333 7.95 7.95 45.96 2.40
3616 4146 8.263640 AGCATTAGTATCACTTTGTGAAGATCT 58.736 33.333 4.46 0.00 45.96 2.75
3617 4147 8.430801 AGCATTAGTATCACTTTGTGAAGATC 57.569 34.615 4.46 0.00 45.96 2.75
3618 4148 8.263640 AGAGCATTAGTATCACTTTGTGAAGAT 58.736 33.333 4.46 0.00 45.96 2.40
3619 4149 7.615403 AGAGCATTAGTATCACTTTGTGAAGA 58.385 34.615 4.46 0.00 45.96 2.87
3620 4150 7.840342 AGAGCATTAGTATCACTTTGTGAAG 57.160 36.000 4.46 0.00 45.96 3.02
3621 4151 8.097038 AGAAGAGCATTAGTATCACTTTGTGAA 58.903 33.333 4.46 0.00 45.96 3.18
3622 4152 7.615403 AGAAGAGCATTAGTATCACTTTGTGA 58.385 34.615 2.77 2.77 46.90 3.58
3623 4153 7.840342 AGAAGAGCATTAGTATCACTTTGTG 57.160 36.000 0.00 0.00 34.45 3.33
3624 4154 8.531982 TGTAGAAGAGCATTAGTATCACTTTGT 58.468 33.333 0.00 0.00 0.00 2.83
3625 4155 8.932945 TGTAGAAGAGCATTAGTATCACTTTG 57.067 34.615 0.00 0.00 0.00 2.77
3626 4156 9.539825 CATGTAGAAGAGCATTAGTATCACTTT 57.460 33.333 0.00 0.00 0.00 2.66
3627 4157 8.918116 TCATGTAGAAGAGCATTAGTATCACTT 58.082 33.333 0.00 0.00 0.00 3.16
3628 4158 8.470657 TCATGTAGAAGAGCATTAGTATCACT 57.529 34.615 0.00 0.00 0.00 3.41
3629 4159 9.703892 AATCATGTAGAAGAGCATTAGTATCAC 57.296 33.333 0.00 0.00 0.00 3.06
3633 4163 9.755804 CTCAAATCATGTAGAAGAGCATTAGTA 57.244 33.333 0.00 0.00 0.00 1.82
3634 4164 7.226325 GCTCAAATCATGTAGAAGAGCATTAGT 59.774 37.037 18.05 0.00 43.41 2.24
3635 4165 7.441760 AGCTCAAATCATGTAGAAGAGCATTAG 59.558 37.037 21.98 0.63 44.91 1.73
3636 4166 7.278135 AGCTCAAATCATGTAGAAGAGCATTA 58.722 34.615 21.98 0.00 44.91 1.90
3637 4167 6.120905 AGCTCAAATCATGTAGAAGAGCATT 58.879 36.000 21.98 8.31 44.91 3.56
3638 4168 5.682659 AGCTCAAATCATGTAGAAGAGCAT 58.317 37.500 21.98 11.17 44.91 3.79
3639 4169 5.095145 AGCTCAAATCATGTAGAAGAGCA 57.905 39.130 21.98 0.00 44.91 4.26
3640 4170 5.114780 TGAGCTCAAATCATGTAGAAGAGC 58.885 41.667 15.67 16.37 43.85 4.09
3641 4171 6.571605 TCTGAGCTCAAATCATGTAGAAGAG 58.428 40.000 18.85 0.00 0.00 2.85
3642 4172 6.535963 TCTGAGCTCAAATCATGTAGAAGA 57.464 37.500 18.85 3.59 0.00 2.87
3643 4173 7.789273 ATTCTGAGCTCAAATCATGTAGAAG 57.211 36.000 18.85 0.98 0.00 2.85
3644 4174 8.456471 CAAATTCTGAGCTCAAATCATGTAGAA 58.544 33.333 18.85 13.94 0.00 2.10
3645 4175 7.414873 GCAAATTCTGAGCTCAAATCATGTAGA 60.415 37.037 18.85 5.13 0.00 2.59
3646 4176 6.691818 GCAAATTCTGAGCTCAAATCATGTAG 59.308 38.462 18.85 2.53 0.00 2.74
3647 4177 6.376299 AGCAAATTCTGAGCTCAAATCATGTA 59.624 34.615 18.85 0.00 32.05 2.29
3648 4178 5.185249 AGCAAATTCTGAGCTCAAATCATGT 59.815 36.000 18.85 0.00 32.05 3.21
3649 4179 5.651530 AGCAAATTCTGAGCTCAAATCATG 58.348 37.500 18.85 19.17 32.05 3.07
3650 4180 5.916661 AGCAAATTCTGAGCTCAAATCAT 57.083 34.783 18.85 9.93 32.05 2.45
3651 4181 5.717078 AAGCAAATTCTGAGCTCAAATCA 57.283 34.783 18.85 2.00 37.70 2.57
3652 4182 6.154445 TCAAAGCAAATTCTGAGCTCAAATC 58.846 36.000 18.85 8.69 37.70 2.17
3653 4183 6.092955 TCAAAGCAAATTCTGAGCTCAAAT 57.907 33.333 18.85 16.19 37.70 2.32
3654 4184 5.518848 TCAAAGCAAATTCTGAGCTCAAA 57.481 34.783 18.85 14.69 37.70 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.