Multiple sequence alignment - TraesCS7A01G129200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G129200 chr7A 100.000 2997 0 0 1 2997 83229878 83232874 0 5535
1 TraesCS7A01G129200 chr6D 92.971 3002 167 16 1 2997 380490205 380487243 0 4335
2 TraesCS7A01G129200 chr5D 93.127 2299 120 18 1 2289 512436318 512434048 0 3336
3 TraesCS7A01G129200 chr5D 92.017 714 45 3 2285 2997 512432341 512431639 0 992
4 TraesCS7A01G129200 chr2D 94.369 1616 84 5 1 1615 627146293 627147902 0 2473
5 TraesCS7A01G129200 chr3B 77.740 1752 332 48 62 1775 65315963 65314232 0 1022


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G129200 chr7A 83229878 83232874 2996 False 5535 5535 100.000 1 2997 1 chr7A.!!$F1 2996
1 TraesCS7A01G129200 chr6D 380487243 380490205 2962 True 4335 4335 92.971 1 2997 1 chr6D.!!$R1 2996
2 TraesCS7A01G129200 chr5D 512431639 512436318 4679 True 2164 3336 92.572 1 2997 2 chr5D.!!$R1 2996
3 TraesCS7A01G129200 chr2D 627146293 627147902 1609 False 2473 2473 94.369 1 1615 1 chr2D.!!$F1 1614
4 TraesCS7A01G129200 chr3B 65314232 65315963 1731 True 1022 1022 77.740 62 1775 1 chr3B.!!$R1 1713

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
405 417 0.384669 GTAGCTCGTCGGCCAATAGT 59.615 55.0 2.24 0.0 0.0 2.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2293 4037 0.317519 GGTTTGAAAAGTGTCGGCGG 60.318 55.0 7.21 0.0 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 89 5.224135 CAGTCATCAATGTTCACATTTGCA 58.776 37.500 2.25 0.00 43.48 4.08
144 145 2.124109 TTGCAAGGCCAACGGACA 60.124 55.556 5.01 0.00 29.21 4.02
247 249 6.264518 ACAATTCGTTTGTTATCCCTGTTTCT 59.735 34.615 1.50 0.00 46.51 2.52
248 250 5.682943 TTCGTTTGTTATCCCTGTTTCTG 57.317 39.130 0.00 0.00 0.00 3.02
263 265 2.885266 GTTTCTGACAAGGTTTCTCCCC 59.115 50.000 0.00 0.00 36.75 4.81
266 268 0.765135 TGACAAGGTTTCTCCCCGGA 60.765 55.000 0.73 0.00 36.75 5.14
340 343 7.883311 AGTTTACATACAATGCCTAGTTCAACT 59.117 33.333 0.00 0.00 0.00 3.16
341 344 7.609760 TTACATACAATGCCTAGTTCAACTG 57.390 36.000 0.00 0.00 0.00 3.16
360 363 5.996669 ACTGACACCCTTTAAAAGTAACG 57.003 39.130 0.00 0.00 0.00 3.18
366 369 7.337942 TGACACCCTTTAAAAGTAACGGTTTTA 59.662 33.333 0.00 0.00 28.60 1.52
405 417 0.384669 GTAGCTCGTCGGCCAATAGT 59.615 55.000 2.24 0.00 0.00 2.12
483 495 0.759346 AGAAGGTGTGTCTTCGGCTT 59.241 50.000 0.00 0.00 45.60 4.35
505 517 1.230635 CGACCCACTCCAAGCAGTTG 61.231 60.000 0.00 0.00 0.00 3.16
566 578 1.664649 CGAAGCAAGACACTCGCCA 60.665 57.895 0.00 0.00 0.00 5.69
578 590 2.032528 TCGCCAAGAGGTTGCCAG 59.967 61.111 0.00 0.00 37.19 4.85
642 656 3.926527 TCACGTACTATGTCGAGTAACGT 59.073 43.478 0.00 0.00 43.13 3.99
665 679 4.218635 TCCGAGCTCTGGATATGTTACATC 59.781 45.833 19.22 0.00 0.00 3.06
724 738 2.818130 AACAAAATGCAACATCGCCT 57.182 40.000 0.00 0.00 0.00 5.52
883 897 9.787532 TCAATTTAGTATATTGCACAGCTTTTC 57.212 29.630 8.09 0.00 33.91 2.29
935 952 4.433186 TTATGCATCCAAAACCAAGACG 57.567 40.909 0.19 0.00 0.00 4.18
982 999 7.781324 ATCCAACAACAACTATCAGGAAAAT 57.219 32.000 0.00 0.00 0.00 1.82
1007 1024 4.221482 ACAGCTTAGTCATGAGATGTGTGA 59.779 41.667 0.00 0.00 39.86 3.58
1084 1101 7.654022 TTGACTATGTTTTGGAGGAAGTTTT 57.346 32.000 0.00 0.00 0.00 2.43
1086 1103 7.712797 TGACTATGTTTTGGAGGAAGTTTTTC 58.287 34.615 0.00 0.00 0.00 2.29
1112 1129 0.449388 GATTTTGCCGTGAGCTCCTG 59.551 55.000 12.15 3.03 44.23 3.86
1193 1212 5.329035 AGTCTGTTTCTTGTGTTTTGCAT 57.671 34.783 0.00 0.00 0.00 3.96
1453 1476 1.401905 GCCAGGCGAAGGATTTTAGTG 59.598 52.381 0.00 0.00 0.00 2.74
1465 1488 1.272807 TTTTAGTGCTAGACCCGGCT 58.727 50.000 0.00 0.00 0.00 5.52
1532 1555 1.069090 GTGTCCGACCTGCTTCACA 59.931 57.895 0.00 0.00 0.00 3.58
1570 1593 8.558312 AGATGCATCCAATCCTTATATGATTCT 58.442 33.333 23.06 0.00 30.16 2.40
1610 1633 0.916086 ATGGACCCGTGCATTTCCTA 59.084 50.000 0.00 0.00 38.53 2.94
1622 1645 6.365839 CGTGCATTTCCTATGATCATGTTAC 58.634 40.000 18.72 4.54 0.00 2.50
1657 1680 5.330271 CGTAAGTTCTGAAGACCACTTTG 57.670 43.478 3.42 0.00 36.39 2.77
1676 1699 2.713877 TGCATCATTGTTAGCTGCTCA 58.286 42.857 4.91 0.00 34.02 4.26
1679 1702 2.113860 TCATTGTTAGCTGCTCACCC 57.886 50.000 4.91 0.00 0.00 4.61
1850 1879 4.316205 TTGCATCTTATCCACGTCGTAT 57.684 40.909 0.00 0.00 0.00 3.06
1896 1925 1.407437 GGCGAACCTGGAGATTCACAT 60.407 52.381 0.00 0.00 0.00 3.21
1898 1927 2.677902 GCGAACCTGGAGATTCACATGA 60.678 50.000 0.00 0.00 0.00 3.07
1925 1954 1.688735 TGCTCTATGAGGTTATGCGCT 59.311 47.619 9.73 0.00 0.00 5.92
1948 1977 3.282021 GCAAGGCAATGAATCTCCAGTA 58.718 45.455 0.00 0.00 0.00 2.74
1977 2006 4.024556 CGATGCACTTGAAGCTATTAAGGG 60.025 45.833 0.00 6.10 0.00 3.95
2024 2054 8.352201 GCTTTGATATTGGTATGTTGATGCTAA 58.648 33.333 0.00 0.00 0.00 3.09
2030 2060 4.535781 TGGTATGTTGATGCTAATTGGCT 58.464 39.130 15.31 0.45 0.00 4.75
2057 2087 2.288702 CGCTAGATGGATGAACCCTCAG 60.289 54.545 0.00 0.00 36.06 3.35
2063 2093 4.535294 AGATGGATGAACCCTCAGATATGG 59.465 45.833 0.00 0.00 36.06 2.74
2065 2095 3.648067 TGGATGAACCCTCAGATATGGAC 59.352 47.826 0.00 0.00 38.00 4.02
2066 2096 3.648067 GGATGAACCCTCAGATATGGACA 59.352 47.826 0.00 0.00 34.23 4.02
2067 2097 4.288105 GGATGAACCCTCAGATATGGACAT 59.712 45.833 0.00 0.00 34.23 3.06
2071 2101 6.493166 TGAACCCTCAGATATGGACATTTTT 58.507 36.000 0.00 0.00 0.00 1.94
2075 2105 6.548622 ACCCTCAGATATGGACATTTTTCATG 59.451 38.462 0.00 0.00 0.00 3.07
2081 2111 7.434307 CAGATATGGACATTTTTCATGCAAGAC 59.566 37.037 0.00 0.00 0.00 3.01
2154 2184 2.046507 GCTAGGTGCACTGCTGCT 60.047 61.111 17.98 7.31 44.57 4.24
2155 2185 2.396955 GCTAGGTGCACTGCTGCTG 61.397 63.158 17.98 4.89 44.57 4.41
2156 2186 2.359107 TAGGTGCACTGCTGCTGC 60.359 61.111 17.98 8.89 44.57 5.25
2195 2225 9.877178 TGTAACACACTTTTTATCAATTTGGTT 57.123 25.926 0.00 0.00 0.00 3.67
2198 2228 9.665719 AACACACTTTTTATCAATTTGGTTCTT 57.334 25.926 0.00 0.00 0.00 2.52
2212 2243 7.566658 ATTTGGTTCTTCCCAATTATTTCCA 57.433 32.000 0.00 0.00 43.77 3.53
2249 2282 3.397906 TGATGTGCCCGGTCATCA 58.602 55.556 21.82 21.82 45.07 3.07
2254 2287 2.100631 GTGCCCGGTCATCAGTTCG 61.101 63.158 0.00 0.00 0.00 3.95
2257 2290 1.635663 GCCCGGTCATCAGTTCGTTG 61.636 60.000 0.00 0.00 0.00 4.10
2293 4037 2.037251 GCCTTTTTGTTCTCCTTTCCCC 59.963 50.000 0.00 0.00 0.00 4.81
2296 4040 0.538746 TTTGTTCTCCTTTCCCCCGC 60.539 55.000 0.00 0.00 0.00 6.13
2298 4042 3.712907 TTCTCCTTTCCCCCGCCG 61.713 66.667 0.00 0.00 0.00 6.46
2311 4055 0.317519 CCCGCCGACACTTTTCAAAC 60.318 55.000 0.00 0.00 0.00 2.93
2376 4120 3.056821 TCAGGATTGATAGCGATAACCGG 60.057 47.826 0.00 0.00 39.04 5.28
2377 4121 6.794954 ATCAGGATTGATAGCGATAACCGGT 61.795 44.000 0.00 0.00 42.21 5.28
2378 4122 8.200506 ATCAGGATTGATAGCGATAACCGGTT 62.201 42.308 25.64 25.64 42.21 4.44
2379 4123 9.869779 ATCAGGATTGATAGCGATAACCGGTTC 62.870 44.444 26.16 10.05 42.21 3.62
2383 4127 4.926207 GCGATAACCGGTTCTGGT 57.074 55.556 26.16 8.70 46.67 4.00
2385 4129 1.564207 GCGATAACCGGTTCTGGTAC 58.436 55.000 26.16 6.17 42.89 3.34
2386 4130 1.135024 GCGATAACCGGTTCTGGTACA 60.135 52.381 26.16 4.28 42.89 2.90
2387 4131 2.533266 CGATAACCGGTTCTGGTACAC 58.467 52.381 26.16 6.52 42.89 2.90
2444 4188 3.033909 ACAGCTCCTACAGATGCATACA 58.966 45.455 0.00 0.00 42.85 2.29
2445 4189 3.069300 ACAGCTCCTACAGATGCATACAG 59.931 47.826 0.00 0.00 42.85 2.74
2519 4263 8.281212 AGCCTAGACTATTTTACCAAACAATG 57.719 34.615 0.00 0.00 0.00 2.82
2546 4290 4.755629 AGCATGTAGATTGCAAGAGCTATG 59.244 41.667 4.94 8.16 42.62 2.23
2560 4304 0.243636 GCTATGGCAAACACCCACAC 59.756 55.000 0.00 0.00 38.54 3.82
2572 4316 5.767816 AACACCCACACAGAATTCTTAAC 57.232 39.130 4.86 0.00 0.00 2.01
2593 4337 1.335496 GTAGTTCTTGCCCAAAACGCA 59.665 47.619 0.00 0.00 0.00 5.24
2594 4338 0.385390 AGTTCTTGCCCAAAACGCAG 59.615 50.000 0.00 0.00 37.57 5.18
2612 4356 0.037303 AGGCATTGTCACCAGACTGG 59.963 55.000 20.45 20.45 45.20 4.00
2651 4395 1.033746 CCACACCAGCCACCATCATC 61.034 60.000 0.00 0.00 0.00 2.92
2654 4398 1.915489 ACACCAGCCACCATCATCTTA 59.085 47.619 0.00 0.00 0.00 2.10
2728 4472 1.208614 CCGCTTCAGTTTCTGCTGC 59.791 57.895 0.00 0.00 36.49 5.25
2779 4523 4.202367 CCTCCTCTCAAGTAACCACACTTT 60.202 45.833 0.00 0.00 36.61 2.66
2821 4565 3.073650 AGCTGTTTGAGGAAAGGATCTGT 59.926 43.478 0.00 0.00 0.00 3.41
2902 4646 3.893200 TCACGGAGGAAGAGTTAGAACAA 59.107 43.478 0.00 0.00 0.00 2.83
2931 4675 6.566197 ATTTCAGAAGCAACTAACAAGAGG 57.434 37.500 0.00 0.00 0.00 3.69
2973 4717 3.826729 ACTTCAAATTGCACTTACCCTCC 59.173 43.478 0.00 0.00 0.00 4.30
2976 4720 3.157087 CAAATTGCACTTACCCTCCAGT 58.843 45.455 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 4.401022 TCATCTCTGAAATGTTTGCCAGT 58.599 39.130 0.00 0.00 0.00 4.00
88 89 2.556144 TGCAGTTGATGAGCTTGTCT 57.444 45.000 0.00 0.00 0.00 3.41
144 145 6.182627 TCACTCTTCAGGATGCATTGTTTAT 58.817 36.000 0.00 0.00 34.76 1.40
247 249 0.765135 TCCGGGGAGAAACCTTGTCA 60.765 55.000 0.00 0.00 38.98 3.58
248 250 0.618981 ATCCGGGGAGAAACCTTGTC 59.381 55.000 0.00 0.00 38.98 3.18
263 265 1.811266 CGAGTTGTCCAGCCATCCG 60.811 63.158 0.00 0.00 0.00 4.18
266 268 1.880027 GTTTTCGAGTTGTCCAGCCAT 59.120 47.619 0.00 0.00 0.00 4.40
311 313 9.727859 TGAACTAGGCATTGTATGTAAACTAAA 57.272 29.630 0.00 0.00 0.00 1.85
340 343 4.779696 ACCGTTACTTTTAAAGGGTGTCA 58.220 39.130 9.64 0.00 42.05 3.58
341 344 5.756195 AACCGTTACTTTTAAAGGGTGTC 57.244 39.130 9.64 0.00 42.63 3.67
360 363 6.378582 TGCGTCAGAAATGATTCTTAAAACC 58.621 36.000 0.00 0.00 43.43 3.27
366 369 3.679389 ACCTGCGTCAGAAATGATTCTT 58.321 40.909 8.20 0.00 43.43 2.52
405 417 1.272648 CCCCTCTTCCTTGCAATGGAA 60.273 52.381 21.52 21.52 46.62 3.53
483 495 2.099652 CTGCTTGGAGTGGGTCGTCA 62.100 60.000 0.00 0.00 0.00 4.35
505 517 3.397482 CAGTATCTACTGCTGAATGGGC 58.603 50.000 4.52 0.00 46.03 5.36
566 578 3.418684 AAATCGTACTGGCAACCTCTT 57.581 42.857 0.00 0.00 0.00 2.85
578 590 9.651718 GGTCATCAAAGAATGAATAAATCGTAC 57.348 33.333 0.00 0.00 42.54 3.67
637 651 2.336945 TATCCAGAGCTCGGACGTTA 57.663 50.000 23.55 13.18 34.69 3.18
642 656 3.562182 TGTAACATATCCAGAGCTCGGA 58.438 45.455 23.38 23.38 36.84 4.55
665 679 1.636988 GGTGTCGTTTGTAGATCCGG 58.363 55.000 0.00 0.00 0.00 5.14
762 776 0.457851 CTCTAAGGACTGGGACTGCG 59.542 60.000 0.00 0.00 0.00 5.18
883 897 3.727726 TGAACGCATATATGGTGTGAGG 58.272 45.455 14.51 0.00 0.00 3.86
982 999 6.071391 TCACACATCTCATGACTAAGCTGTTA 60.071 38.462 0.00 0.00 0.00 2.41
1007 1024 7.775053 TGTGAAAGCCTCCTAAAAATAACAT 57.225 32.000 0.00 0.00 0.00 2.71
1033 1050 5.357314 TGTCCTTCGAATAGGTCTTGTCTAG 59.643 44.000 0.00 0.00 36.63 2.43
1035 1052 4.082136 GTGTCCTTCGAATAGGTCTTGTCT 60.082 45.833 0.00 0.00 36.63 3.41
1084 1101 0.605319 ACGGCAAAATCAGGCTCGAA 60.605 50.000 0.00 0.00 0.00 3.71
1086 1103 1.135315 CACGGCAAAATCAGGCTCG 59.865 57.895 0.00 0.00 0.00 5.03
1167 1186 7.148641 TGCAAAACACAAGAAACAGACTTAAA 58.851 30.769 0.00 0.00 0.00 1.52
1193 1212 2.685897 GGCATTGGATAAAACTGCGGTA 59.314 45.455 0.00 0.00 33.69 4.02
1347 1367 9.646427 ACAGAAAACAGATAGTAAGAAGTCATC 57.354 33.333 0.00 0.00 0.00 2.92
1351 1371 6.651225 GCCACAGAAAACAGATAGTAAGAAGT 59.349 38.462 0.00 0.00 0.00 3.01
1354 1374 6.109156 TGCCACAGAAAACAGATAGTAAGA 57.891 37.500 0.00 0.00 0.00 2.10
1370 1393 1.141657 AGGTATATGCCACTGCCACAG 59.858 52.381 12.79 0.00 37.52 3.66
1519 1542 1.595109 TGCAGTGTGAAGCAGGTCG 60.595 57.895 0.00 0.00 35.51 4.79
1570 1593 2.594303 CCGGAACTGCAGTGCCAA 60.594 61.111 37.64 0.00 44.37 4.52
1635 1658 4.318831 GCAAAGTGGTCTTCAGAACTTACG 60.319 45.833 0.00 0.00 32.69 3.18
1657 1680 2.223433 GGTGAGCAGCTAACAATGATGC 60.223 50.000 12.37 0.00 45.82 3.91
1676 1699 7.192852 TGCCATCACATAATTTAATTTGGGT 57.807 32.000 0.00 0.00 0.00 4.51
1811 1840 7.041107 AGATGCAAAGAGTTTTGTTGCTAAAA 58.959 30.769 8.84 0.00 46.19 1.52
1896 1925 3.378512 ACCTCATAGAGCATCAGGTTCA 58.621 45.455 0.00 0.00 34.47 3.18
1898 1927 5.744300 GCATAACCTCATAGAGCATCAGGTT 60.744 44.000 6.86 6.86 45.99 3.50
1948 1977 1.813513 CTTCAAGTGCATCGGAAGGT 58.186 50.000 13.37 0.00 34.54 3.50
1977 2006 1.478137 CTACAGCGCTACGAATGACC 58.522 55.000 10.99 0.00 0.00 4.02
2006 2036 5.599656 AGCCAATTAGCATCAACATACCAAT 59.400 36.000 0.00 0.00 34.23 3.16
2024 2054 3.388024 TCCATCTAGCGTCTAAAGCCAAT 59.612 43.478 0.00 0.00 34.64 3.16
2030 2060 4.202223 GGGTTCATCCATCTAGCGTCTAAA 60.202 45.833 0.00 0.00 38.11 1.85
2057 2087 7.486647 AGTCTTGCATGAAAAATGTCCATATC 58.513 34.615 3.51 0.00 0.00 1.63
2063 2093 8.524870 ACATTTAGTCTTGCATGAAAAATGTC 57.475 30.769 29.06 11.31 38.74 3.06
2071 2101 8.855110 TCCTTAAAAACATTTAGTCTTGCATGA 58.145 29.630 0.00 0.00 0.00 3.07
2075 2105 8.135529 AGTGTCCTTAAAAACATTTAGTCTTGC 58.864 33.333 0.00 0.00 0.00 4.01
2107 2137 1.808945 ACTGCTAGTGTTTGCATGAGC 59.191 47.619 0.00 0.00 38.59 4.26
2150 2180 8.586273 GTGTTACATAATATTTGTTTGCAGCAG 58.414 33.333 0.00 0.00 0.00 4.24
2151 2181 8.084684 TGTGTTACATAATATTTGTTTGCAGCA 58.915 29.630 0.00 0.00 0.00 4.41
2152 2182 8.372521 GTGTGTTACATAATATTTGTTTGCAGC 58.627 33.333 0.00 0.00 0.00 5.25
2153 2183 9.624697 AGTGTGTTACATAATATTTGTTTGCAG 57.375 29.630 0.00 0.00 0.00 4.41
2154 2184 9.973450 AAGTGTGTTACATAATATTTGTTTGCA 57.027 25.926 0.00 0.00 0.00 4.08
2192 2222 5.129320 AGCATGGAAATAATTGGGAAGAACC 59.871 40.000 0.00 0.00 38.08 3.62
2195 2225 6.672593 ACTAGCATGGAAATAATTGGGAAGA 58.327 36.000 0.00 0.00 0.00 2.87
2198 2228 5.103728 TGGACTAGCATGGAAATAATTGGGA 60.104 40.000 0.00 0.00 0.00 4.37
2212 2243 7.228108 CACATCATAGTGAAAATGGACTAGCAT 59.772 37.037 0.00 0.00 42.05 3.79
2254 2287 1.401905 GGCTTGTTCGGATCATCCAAC 59.598 52.381 4.06 8.10 35.91 3.77
2257 2290 2.044123 AAGGCTTGTTCGGATCATCC 57.956 50.000 0.00 0.00 0.00 3.51
2283 2316 4.468689 GTCGGCGGGGGAAAGGAG 62.469 72.222 7.21 0.00 0.00 3.69
2293 4037 0.317519 GGTTTGAAAAGTGTCGGCGG 60.318 55.000 7.21 0.00 0.00 6.13
2296 4040 3.775661 AACAGGTTTGAAAAGTGTCGG 57.224 42.857 0.00 0.00 0.00 4.79
2358 4102 4.386049 CAGAACCGGTTATCGCTATCAATC 59.614 45.833 22.33 2.47 37.59 2.67
2360 4104 3.491964 CCAGAACCGGTTATCGCTATCAA 60.492 47.826 22.33 0.00 37.59 2.57
2362 4106 2.035576 ACCAGAACCGGTTATCGCTATC 59.964 50.000 22.33 5.00 34.91 2.08
2367 4111 2.094597 TGTGTACCAGAACCGGTTATCG 60.095 50.000 22.33 13.10 40.67 2.92
2387 4131 9.734620 CCAATTGTATTAGTCACCACATTATTG 57.265 33.333 4.43 0.00 0.00 1.90
2426 4170 2.869636 GCCTGTATGCATCTGTAGGAGC 60.870 54.545 17.63 3.98 0.00 4.70
2444 4188 6.570378 GCATGAGTTATTGTTAGTTTGTGCCT 60.570 38.462 0.00 0.00 0.00 4.75
2445 4189 5.572896 GCATGAGTTATTGTTAGTTTGTGCC 59.427 40.000 0.00 0.00 0.00 5.01
2490 4234 6.801718 TTGGTAAAATAGTCTAGGCTAGCA 57.198 37.500 18.24 0.92 0.00 3.49
2492 4236 9.614792 ATTGTTTGGTAAAATAGTCTAGGCTAG 57.385 33.333 15.56 15.56 0.00 3.42
2519 4263 4.319622 GCTCTTGCAATCTACATGCTGATC 60.320 45.833 0.00 0.00 44.14 2.92
2546 4290 1.039856 ATTCTGTGTGGGTGTTTGCC 58.960 50.000 0.00 0.00 0.00 4.52
2560 4304 6.402226 GGGCAAGAACTACGTTAAGAATTCTG 60.402 42.308 9.17 0.00 0.00 3.02
2572 4316 1.662026 GCGTTTTGGGCAAGAACTACG 60.662 52.381 0.00 0.00 0.00 3.51
2593 4337 0.037303 CCAGTCTGGTGACAATGCCT 59.963 55.000 11.09 0.00 45.20 4.75
2594 4338 1.589716 GCCAGTCTGGTGACAATGCC 61.590 60.000 20.24 0.00 45.20 4.40
2612 4356 1.002366 CTCGTGGTGATGTTGCTAGC 58.998 55.000 8.10 8.10 0.00 3.42
2651 4395 2.387309 CATGGACAGCCGTGCTAAG 58.613 57.895 0.00 0.00 43.81 2.18
2728 4472 0.461548 TCTGCAAGATGCTACGAGGG 59.538 55.000 3.78 0.00 45.31 4.30
2779 4523 3.321111 GCTGGTTATCGATCTTAGGGACA 59.679 47.826 0.00 0.00 0.00 4.02
2821 4565 0.739462 GTGGCACGACAATCCGATCA 60.739 55.000 0.00 0.00 0.00 2.92
2884 4628 9.620259 AATAATCATTGTTCTAACTCTTCCTCC 57.380 33.333 0.00 0.00 0.00 4.30
2931 4675 1.421485 CGATGTTGTCGCTTCCTGC 59.579 57.895 0.00 0.00 44.33 4.85
2940 4684 5.339611 GTGCAATTTGAAGTACGATGTTGTC 59.660 40.000 0.00 0.00 0.00 3.18
2942 4686 5.451908 AGTGCAATTTGAAGTACGATGTTG 58.548 37.500 0.00 0.00 0.00 3.33
2949 4693 5.106277 GGAGGGTAAGTGCAATTTGAAGTAC 60.106 44.000 4.05 0.00 0.00 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.