Multiple sequence alignment - TraesCS7A01G129000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G129000 chr7A 100.000 2347 0 0 1 2347 83107365 83105019 0.000000e+00 4335.0
1 TraesCS7A01G129000 chr7A 79.513 986 113 55 460 1405 83142587 83141651 9.210000e-174 619.0
2 TraesCS7A01G129000 chr7A 85.502 538 53 7 900 1420 83157746 83157217 2.650000e-149 538.0
3 TraesCS7A01G129000 chr7A 90.303 165 12 1 2046 2206 628830839 628831003 1.830000e-51 213.0
4 TraesCS7A01G129000 chr7A 86.022 186 21 2 2033 2214 110650993 110650809 6.620000e-46 195.0
5 TraesCS7A01G129000 chr7A 87.574 169 15 4 2046 2209 1472513 1472346 8.560000e-45 191.0
6 TraesCS7A01G129000 chr7A 94.231 104 6 0 234 337 83148076 83147973 2.410000e-35 159.0
7 TraesCS7A01G129000 chr7D 82.754 1525 120 58 1 1420 80463426 80461940 0.000000e+00 1227.0
8 TraesCS7A01G129000 chr7D 82.302 1147 107 40 353 1449 80199106 80198006 0.000000e+00 905.0
9 TraesCS7A01G129000 chr7D 87.225 681 54 15 761 1424 80298603 80297939 0.000000e+00 745.0
10 TraesCS7A01G129000 chr7D 86.641 524 44 18 905 1407 80417341 80416823 7.330000e-155 556.0
11 TraesCS7A01G129000 chr7D 89.759 332 29 1 1094 1425 80383075 80382749 1.000000e-113 420.0
12 TraesCS7A01G129000 chr7D 84.011 369 31 11 1 346 80200798 80200435 1.740000e-86 329.0
13 TraesCS7A01G129000 chr7D 83.967 368 32 11 1 346 80301999 80301637 6.250000e-86 327.0
14 TraesCS7A01G129000 chr7D 85.714 217 22 6 1207 1420 80384334 80384124 1.090000e-53 220.0
15 TraesCS7A01G129000 chr7D 83.710 221 33 3 1473 1692 80297017 80296799 3.060000e-49 206.0
16 TraesCS7A01G129000 chr7D 89.937 159 12 3 2052 2206 464028784 464028942 3.950000e-48 202.0
17 TraesCS7A01G129000 chr7D 86.010 193 19 2 358 542 80298932 80298740 1.420000e-47 200.0
18 TraesCS7A01G129000 chr7D 89.441 161 13 1 2050 2206 106001105 106001265 1.420000e-47 200.0
19 TraesCS7A01G129000 chr7D 80.488 246 21 11 1785 2028 80196895 80196675 1.870000e-36 163.0
20 TraesCS7A01G129000 chr7D 76.033 363 50 21 423 778 112411240 112411572 1.120000e-33 154.0
21 TraesCS7A01G129000 chr7D 80.189 212 22 10 1825 2035 80266642 80266450 8.740000e-30 141.0
22 TraesCS7A01G129000 chr7D 90.588 85 3 5 2268 2347 80196320 80196236 8.870000e-20 108.0
23 TraesCS7A01G129000 chr7D 97.674 43 1 0 615 657 80298671 80298629 9.000000e-10 75.0
24 TraesCS7A01G129000 chr7B 82.550 1106 110 31 358 1420 27487297 27486232 0.000000e+00 896.0
25 TraesCS7A01G129000 chr7B 84.831 356 29 10 1 337 27490050 27489701 3.740000e-88 335.0
26 TraesCS7A01G129000 chr7B 91.707 205 14 1 913 1117 27594947 27594746 4.940000e-72 281.0
27 TraesCS7A01G129000 chr7B 91.358 162 10 1 2046 2203 645394414 645394575 3.930000e-53 219.0
28 TraesCS7A01G129000 chr7B 82.727 220 36 2 1473 1692 27484773 27484556 6.620000e-46 195.0
29 TraesCS7A01G129000 chr7B 87.574 169 16 3 2046 2209 176030157 176029989 8.560000e-45 191.0
30 TraesCS7A01G129000 chr7B 75.758 165 25 9 611 774 27595219 27595069 4.190000e-08 69.4
31 TraesCS7A01G129000 chr7B 97.368 38 1 0 918 955 27078386 27078349 5.410000e-07 65.8
32 TraesCS7A01G129000 chr3A 90.854 164 11 1 2047 2206 687031447 687031610 1.410000e-52 217.0
33 TraesCS7A01G129000 chr3B 89.349 169 14 1 2045 2209 177086527 177086359 2.360000e-50 209.0
34 TraesCS7A01G129000 chr6B 90.323 62 6 0 1124 1185 685017564 685017625 5.380000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G129000 chr7A 83105019 83107365 2346 True 4335.000000 4335 100.000000 1 2347 1 chr7A.!!$R2 2346
1 TraesCS7A01G129000 chr7A 83141651 83142587 936 True 619.000000 619 79.513000 460 1405 1 chr7A.!!$R3 945
2 TraesCS7A01G129000 chr7A 83157217 83157746 529 True 538.000000 538 85.502000 900 1420 1 chr7A.!!$R5 520
3 TraesCS7A01G129000 chr7D 80461940 80463426 1486 True 1227.000000 1227 82.754000 1 1420 1 chr7D.!!$R3 1419
4 TraesCS7A01G129000 chr7D 80416823 80417341 518 True 556.000000 556 86.641000 905 1407 1 chr7D.!!$R2 502
5 TraesCS7A01G129000 chr7D 80196236 80200798 4562 True 376.250000 905 84.347250 1 2347 4 chr7D.!!$R4 2346
6 TraesCS7A01G129000 chr7D 80382749 80384334 1585 True 320.000000 420 87.736500 1094 1425 2 chr7D.!!$R6 331
7 TraesCS7A01G129000 chr7D 80296799 80301999 5200 True 310.600000 745 87.717200 1 1692 5 chr7D.!!$R5 1691
8 TraesCS7A01G129000 chr7B 27484556 27490050 5494 True 475.333333 896 83.369333 1 1692 3 chr7B.!!$R3 1691

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
585 5338 0.108851 TTCAGCTGTAAGATCGCGCA 60.109 50.0 14.67 0.0 34.07 6.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1722 8060 0.245539 GCATGGCATGTGCAAAGAGT 59.754 50.0 26.94 0.0 44.36 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 84 3.100545 CAAGGCGTGGATTAGGCAT 57.899 52.632 0.00 0.00 41.84 4.40
78 85 0.664761 CAAGGCGTGGATTAGGCATG 59.335 55.000 0.00 0.00 41.84 4.06
87 94 1.945394 GGATTAGGCATGCTGTCACAG 59.055 52.381 18.92 0.00 34.12 3.66
105 112 3.403936 GGCAACTGTGACTGGAGTT 57.596 52.632 0.00 0.00 32.48 3.01
130 137 0.618680 AGCATGGAGTGGGAGCAGTA 60.619 55.000 0.00 0.00 0.00 2.74
162 172 2.671070 CTTGACTCGGGGGCATGT 59.329 61.111 0.00 0.00 30.17 3.21
339 383 1.600957 CTAGCTTGACCATGCATTCGG 59.399 52.381 0.00 0.00 34.33 4.30
353 5041 1.129811 CATTCGGCAGTACGTTTTCCC 59.870 52.381 0.00 0.00 34.94 3.97
354 5042 0.945265 TTCGGCAGTACGTTTTCCCG 60.945 55.000 0.00 1.76 37.21 5.14
355 5043 2.865308 GGCAGTACGTTTTCCCGC 59.135 61.111 0.00 0.00 0.00 6.13
356 5044 2.472934 GCAGTACGTTTTCCCGCG 59.527 61.111 0.00 0.00 0.00 6.46
397 5085 0.251341 GAGCCCCAACACCATGTCTT 60.251 55.000 0.00 0.00 0.00 3.01
400 5088 0.405585 CCCCAACACCATGTCTTCCT 59.594 55.000 0.00 0.00 0.00 3.36
406 5094 1.203364 ACACCATGTCTTCCTCTCCCT 60.203 52.381 0.00 0.00 0.00 4.20
430 5124 4.129737 CCACGAGCCCACGACGAT 62.130 66.667 0.00 0.00 37.03 3.73
444 5138 2.755655 ACGACGATTTCACTCTCTCCAT 59.244 45.455 0.00 0.00 0.00 3.41
464 5160 1.595993 ATCGACCTCCACTGTCACCG 61.596 60.000 0.00 0.00 32.91 4.94
552 5299 2.001361 GCGTTGCCGGAGTAGCTAGA 62.001 60.000 5.05 0.00 33.68 2.43
553 5300 0.454600 CGTTGCCGGAGTAGCTAGAA 59.545 55.000 5.05 0.00 0.00 2.10
554 5301 1.135199 CGTTGCCGGAGTAGCTAGAAA 60.135 52.381 5.05 0.00 0.00 2.52
582 5335 2.728368 GCTTTCAGCTGTAAGATCGC 57.272 50.000 30.50 16.02 38.45 4.58
583 5336 1.005557 GCTTTCAGCTGTAAGATCGCG 60.006 52.381 30.50 0.00 38.45 5.87
585 5338 0.108851 TTCAGCTGTAAGATCGCGCA 60.109 50.000 14.67 0.00 34.07 6.09
586 5339 0.802222 TCAGCTGTAAGATCGCGCAC 60.802 55.000 14.67 0.00 34.07 5.34
588 5341 0.803768 AGCTGTAAGATCGCGCACAG 60.804 55.000 16.50 16.50 41.06 3.66
589 5342 1.756375 GCTGTAAGATCGCGCACAGG 61.756 60.000 20.65 0.00 39.02 4.00
591 5344 1.141019 GTAAGATCGCGCACAGGGA 59.859 57.895 8.75 0.00 46.13 4.20
592 5345 0.459585 GTAAGATCGCGCACAGGGAA 60.460 55.000 8.75 0.00 45.20 3.97
593 5346 0.248012 TAAGATCGCGCACAGGGAAA 59.752 50.000 8.75 0.00 45.20 3.13
594 5347 0.605319 AAGATCGCGCACAGGGAAAA 60.605 50.000 8.75 0.00 45.20 2.29
595 5348 1.134694 GATCGCGCACAGGGAAAAC 59.865 57.895 8.75 0.00 45.20 2.43
596 5349 1.573829 GATCGCGCACAGGGAAAACA 61.574 55.000 8.75 0.00 45.20 2.83
597 5350 1.577328 ATCGCGCACAGGGAAAACAG 61.577 55.000 8.75 0.00 45.20 3.16
598 5351 2.542907 CGCGCACAGGGAAAACAGT 61.543 57.895 8.75 0.00 34.27 3.55
599 5352 1.733526 GCGCACAGGGAAAACAGTT 59.266 52.632 0.30 0.00 0.00 3.16
600 5353 0.594796 GCGCACAGGGAAAACAGTTG 60.595 55.000 0.30 0.00 0.00 3.16
601 5354 0.738389 CGCACAGGGAAAACAGTTGT 59.262 50.000 0.00 0.00 0.00 3.32
602 5355 1.268539 CGCACAGGGAAAACAGTTGTC 60.269 52.381 0.00 0.00 0.00 3.18
603 5356 1.268539 GCACAGGGAAAACAGTTGTCG 60.269 52.381 0.00 0.00 0.00 4.35
604 5357 2.285083 CACAGGGAAAACAGTTGTCGA 58.715 47.619 0.00 0.00 0.00 4.20
605 5358 2.680841 CACAGGGAAAACAGTTGTCGAA 59.319 45.455 0.00 0.00 0.00 3.71
606 5359 2.943033 ACAGGGAAAACAGTTGTCGAAG 59.057 45.455 0.00 0.00 0.00 3.79
607 5360 2.290641 CAGGGAAAACAGTTGTCGAAGG 59.709 50.000 0.00 0.00 0.00 3.46
608 5361 1.607148 GGGAAAACAGTTGTCGAAGGG 59.393 52.381 0.00 0.00 0.00 3.95
609 5362 2.567985 GGAAAACAGTTGTCGAAGGGA 58.432 47.619 0.00 0.00 0.00 4.20
610 5363 2.946990 GGAAAACAGTTGTCGAAGGGAA 59.053 45.455 0.00 0.00 0.00 3.97
611 5364 3.003378 GGAAAACAGTTGTCGAAGGGAAG 59.997 47.826 0.00 0.00 0.00 3.46
612 5365 2.256117 AACAGTTGTCGAAGGGAAGG 57.744 50.000 0.00 0.00 0.00 3.46
613 5366 1.420430 ACAGTTGTCGAAGGGAAGGA 58.580 50.000 0.00 0.00 0.00 3.36
618 5406 0.541998 TGTCGAAGGGAAGGAGAGCA 60.542 55.000 0.00 0.00 0.00 4.26
705 5493 4.475135 GTGCGGGAAGAGGGGCTC 62.475 72.222 0.00 0.00 0.00 4.70
737 5525 2.738480 CGTTCGGGGTCACCAAGA 59.262 61.111 0.00 0.00 40.22 3.02
750 5538 2.591429 CAAGACCACGCTGCCACA 60.591 61.111 0.00 0.00 0.00 4.17
756 5544 3.357079 CACGCTGCCACACTTCCC 61.357 66.667 0.00 0.00 0.00 3.97
834 5643 0.508641 CGAACGAGCAACAAGTGAGG 59.491 55.000 0.00 0.00 0.00 3.86
839 5648 1.002468 CGAGCAACAAGTGAGGGTTTG 60.002 52.381 0.00 0.00 0.00 2.93
840 5649 0.746659 AGCAACAAGTGAGGGTTTGC 59.253 50.000 0.00 0.00 0.00 3.68
842 5651 1.136891 GCAACAAGTGAGGGTTTGCTT 59.863 47.619 0.00 0.00 0.00 3.91
844 5653 2.143876 ACAAGTGAGGGTTTGCTTGT 57.856 45.000 0.00 0.00 44.36 3.16
845 5654 2.456577 ACAAGTGAGGGTTTGCTTGTT 58.543 42.857 0.00 0.00 46.18 2.83
846 5655 2.831526 ACAAGTGAGGGTTTGCTTGTTT 59.168 40.909 0.00 0.00 46.18 2.83
847 5656 3.189285 CAAGTGAGGGTTTGCTTGTTTG 58.811 45.455 0.00 0.00 35.09 2.93
848 5657 1.756538 AGTGAGGGTTTGCTTGTTTGG 59.243 47.619 0.00 0.00 0.00 3.28
868 5677 2.063266 GTGGTGTTCAATGCAATGCAG 58.937 47.619 14.98 0.44 43.65 4.41
936 5761 3.334054 AGGAAGAGGCTGGTGGGC 61.334 66.667 0.00 0.00 41.20 5.36
1126 5960 1.660575 GGTGATCCATACGCCGTCG 60.661 63.158 0.00 0.00 42.43 5.12
1205 6042 9.959749 GTAAGTTGTGGATTCTTAATTTGTTCA 57.040 29.630 0.00 0.00 0.00 3.18
1237 6074 2.204237 CCTGTCATTGCATCGAATCGA 58.796 47.619 8.12 8.12 41.13 3.59
1238 6075 2.609002 CCTGTCATTGCATCGAATCGAA 59.391 45.455 10.12 0.00 39.99 3.71
1239 6076 3.249320 CCTGTCATTGCATCGAATCGAAT 59.751 43.478 10.12 0.00 39.99 3.34
1240 6077 4.199840 TGTCATTGCATCGAATCGAATG 57.800 40.909 10.12 9.03 39.99 2.67
1241 6078 3.002553 TGTCATTGCATCGAATCGAATGG 59.997 43.478 10.12 3.67 39.99 3.16
1263 6110 2.004017 TGACTGACAACGGTGTTGAAC 58.996 47.619 7.93 0.99 38.41 3.18
1287 6134 1.680249 CCTCTTGCAGGGACTTTAGCC 60.680 57.143 0.00 0.00 38.91 3.93
1317 6180 2.231215 ACGCCTCAAGATACTCATGC 57.769 50.000 0.00 0.00 0.00 4.06
1330 6205 1.343142 ACTCATGCAACCGACTACACA 59.657 47.619 0.00 0.00 0.00 3.72
1338 6213 3.266636 CAACCGACTACACATGGCATTA 58.733 45.455 0.00 0.00 0.00 1.90
1498 7836 0.179067 ACGAAAGTTGGGCTCGAACA 60.179 50.000 1.87 0.00 46.40 3.18
1502 7840 2.280592 GTTGGGCTCGAACACGGT 60.281 61.111 0.00 0.00 0.00 4.83
1505 7843 2.432628 GGGCTCGAACACGGTCTG 60.433 66.667 0.00 0.00 0.00 3.51
1514 7852 1.480212 AACACGGTCTGGGCTGATGA 61.480 55.000 0.00 0.00 0.00 2.92
1515 7853 1.153489 CACGGTCTGGGCTGATGAG 60.153 63.158 0.00 0.00 0.00 2.90
1521 7859 1.153208 CTGGGCTGATGAGAGTGGC 60.153 63.158 0.00 0.00 0.00 5.01
1539 7877 1.357690 CGCATGCAGGCACCATAAG 59.642 57.895 24.53 0.41 0.00 1.73
1540 7878 1.066918 GCATGCAGGCACCATAAGC 59.933 57.895 20.11 0.00 0.00 3.09
1544 7882 1.750193 TGCAGGCACCATAAGCTTAC 58.250 50.000 8.70 0.00 0.00 2.34
1546 7884 2.503765 TGCAGGCACCATAAGCTTACTA 59.496 45.455 8.70 0.00 0.00 1.82
1549 7887 4.580580 GCAGGCACCATAAGCTTACTAAAT 59.419 41.667 8.70 0.00 0.00 1.40
1555 7893 6.093495 GCACCATAAGCTTACTAAATGTGTCA 59.907 38.462 8.70 0.00 0.00 3.58
1577 7915 2.829384 TTGCGGTTCTTGCCTCCCT 61.829 57.895 0.00 0.00 0.00 4.20
1581 7919 1.550130 CGGTTCTTGCCTCCCTACCA 61.550 60.000 0.00 0.00 0.00 3.25
1584 7922 2.490168 GGTTCTTGCCTCCCTACCAAAA 60.490 50.000 0.00 0.00 0.00 2.44
1597 7935 1.018148 ACCAAAATGCAACGTCGACA 58.982 45.000 17.16 0.00 0.00 4.35
1610 7948 4.240883 ACGTCGACAATATTTTCTTCGC 57.759 40.909 17.16 4.11 0.00 4.70
1611 7949 3.924686 ACGTCGACAATATTTTCTTCGCT 59.075 39.130 17.16 2.51 0.00 4.93
1617 7955 5.332280 CGACAATATTTTCTTCGCTGCGATA 60.332 40.000 26.51 14.09 35.23 2.92
1619 7957 6.365839 ACAATATTTTCTTCGCTGCGATATG 58.634 36.000 26.51 17.92 35.23 1.78
1620 7958 6.017934 ACAATATTTTCTTCGCTGCGATATGT 60.018 34.615 26.51 15.44 35.23 2.29
1622 7960 2.577449 TTCTTCGCTGCGATATGTGA 57.423 45.000 26.51 15.13 35.23 3.58
1656 7994 4.120331 GTGTGCCCATTCAGCGGC 62.120 66.667 0.00 0.00 45.92 6.53
1674 8012 1.785041 GCTGCGACAGTTTTGCCTGA 61.785 55.000 8.32 0.00 36.30 3.86
1681 8019 3.243367 CGACAGTTTTGCCTGATTTTCCA 60.243 43.478 0.00 0.00 36.30 3.53
1692 8030 5.124776 TGCCTGATTTTCCACTAATTAACCG 59.875 40.000 0.00 0.00 0.00 4.44
1693 8031 5.449999 GCCTGATTTTCCACTAATTAACCGG 60.450 44.000 0.00 0.00 0.00 5.28
1694 8032 5.067283 CCTGATTTTCCACTAATTAACCGGG 59.933 44.000 6.32 0.00 0.00 5.73
1695 8033 5.572252 TGATTTTCCACTAATTAACCGGGT 58.428 37.500 6.32 0.00 0.00 5.28
1696 8034 6.719301 TGATTTTCCACTAATTAACCGGGTA 58.281 36.000 6.32 0.00 0.00 3.69
1697 8035 7.173722 TGATTTTCCACTAATTAACCGGGTAA 58.826 34.615 15.75 15.75 0.00 2.85
1698 8036 7.668886 TGATTTTCCACTAATTAACCGGGTAAA 59.331 33.333 17.54 0.00 0.00 2.01
1699 8037 8.598202 ATTTTCCACTAATTAACCGGGTAAAT 57.402 30.769 17.54 10.99 0.00 1.40
1700 8038 8.419922 TTTTCCACTAATTAACCGGGTAAATT 57.580 30.769 17.54 14.92 0.00 1.82
1701 8039 8.419922 TTTCCACTAATTAACCGGGTAAATTT 57.580 30.769 17.54 9.71 0.00 1.82
1702 8040 7.628769 TCCACTAATTAACCGGGTAAATTTC 57.371 36.000 17.54 0.00 0.00 2.17
1703 8041 7.404481 TCCACTAATTAACCGGGTAAATTTCT 58.596 34.615 17.54 0.00 0.00 2.52
1704 8042 7.889600 TCCACTAATTAACCGGGTAAATTTCTT 59.110 33.333 17.54 8.16 0.00 2.52
1705 8043 8.186163 CCACTAATTAACCGGGTAAATTTCTTC 58.814 37.037 17.54 0.00 0.00 2.87
1706 8044 8.953313 CACTAATTAACCGGGTAAATTTCTTCT 58.047 33.333 17.54 0.00 0.00 2.85
1707 8045 9.524496 ACTAATTAACCGGGTAAATTTCTTCTT 57.476 29.630 17.54 5.88 0.00 2.52
1708 8046 9.999009 CTAATTAACCGGGTAAATTTCTTCTTC 57.001 33.333 17.54 0.00 0.00 2.87
1709 8047 8.645814 AATTAACCGGGTAAATTTCTTCTTCT 57.354 30.769 17.54 0.00 0.00 2.85
1710 8048 8.645814 ATTAACCGGGTAAATTTCTTCTTCTT 57.354 30.769 17.54 0.00 0.00 2.52
1711 8049 9.743581 ATTAACCGGGTAAATTTCTTCTTCTTA 57.256 29.630 17.54 0.00 0.00 2.10
1712 8050 9.571816 TTAACCGGGTAAATTTCTTCTTCTTAA 57.428 29.630 10.21 0.00 0.00 1.85
1713 8051 8.645814 AACCGGGTAAATTTCTTCTTCTTAAT 57.354 30.769 6.32 0.00 0.00 1.40
1714 8052 8.645814 ACCGGGTAAATTTCTTCTTCTTAATT 57.354 30.769 6.32 0.00 0.00 1.40
1715 8053 9.743581 ACCGGGTAAATTTCTTCTTCTTAATTA 57.256 29.630 6.32 0.00 0.00 1.40
1730 8068 9.659830 TCTTCTTAATTAACGAAAACTCTTTGC 57.340 29.630 0.00 0.00 0.00 3.68
1731 8069 9.445786 CTTCTTAATTAACGAAAACTCTTTGCA 57.554 29.630 0.00 0.00 0.00 4.08
1732 8070 8.776680 TCTTAATTAACGAAAACTCTTTGCAC 57.223 30.769 0.00 0.00 0.00 4.57
1733 8071 8.399425 TCTTAATTAACGAAAACTCTTTGCACA 58.601 29.630 0.00 0.00 0.00 4.57
1734 8072 9.180678 CTTAATTAACGAAAACTCTTTGCACAT 57.819 29.630 0.00 0.00 0.00 3.21
1735 8073 6.991485 ATTAACGAAAACTCTTTGCACATG 57.009 33.333 0.00 0.00 0.00 3.21
1736 8074 2.731217 ACGAAAACTCTTTGCACATGC 58.269 42.857 0.00 0.00 42.50 4.06
1737 8075 2.053627 CGAAAACTCTTTGCACATGCC 58.946 47.619 0.49 0.00 41.18 4.40
1738 8076 2.543445 CGAAAACTCTTTGCACATGCCA 60.543 45.455 0.49 0.00 41.18 4.92
1739 8077 3.656559 GAAAACTCTTTGCACATGCCAT 58.343 40.909 0.49 0.00 41.18 4.40
1740 8078 2.736144 AACTCTTTGCACATGCCATG 57.264 45.000 2.40 2.40 41.18 3.66
1741 8079 0.245539 ACTCTTTGCACATGCCATGC 59.754 50.000 4.17 0.00 43.68 4.06
1754 8092 2.725637 TGCCATGCATCAATACAGTGT 58.274 42.857 0.00 0.00 31.71 3.55
1755 8093 2.684374 TGCCATGCATCAATACAGTGTC 59.316 45.455 0.00 0.00 31.71 3.67
1756 8094 2.286595 GCCATGCATCAATACAGTGTCG 60.287 50.000 0.00 0.00 0.00 4.35
1757 8095 3.197265 CCATGCATCAATACAGTGTCGA 58.803 45.455 0.00 0.00 0.00 4.20
1758 8096 3.622612 CCATGCATCAATACAGTGTCGAA 59.377 43.478 0.00 0.00 0.00 3.71
1759 8097 4.260497 CCATGCATCAATACAGTGTCGAAG 60.260 45.833 0.00 0.00 0.00 3.79
1760 8098 3.925379 TGCATCAATACAGTGTCGAAGT 58.075 40.909 0.00 0.00 0.00 3.01
1761 8099 4.314961 TGCATCAATACAGTGTCGAAGTT 58.685 39.130 0.00 0.00 0.00 2.66
1762 8100 4.152223 TGCATCAATACAGTGTCGAAGTTG 59.848 41.667 0.00 0.00 0.00 3.16
1763 8101 4.641954 CATCAATACAGTGTCGAAGTTGC 58.358 43.478 0.00 0.00 0.00 4.17
1764 8102 3.064207 TCAATACAGTGTCGAAGTTGCC 58.936 45.455 0.00 0.00 0.00 4.52
1765 8103 3.067106 CAATACAGTGTCGAAGTTGCCT 58.933 45.455 0.00 0.00 0.00 4.75
1766 8104 2.433868 TACAGTGTCGAAGTTGCCTC 57.566 50.000 0.00 0.00 0.00 4.70
1767 8105 0.597637 ACAGTGTCGAAGTTGCCTCG 60.598 55.000 0.00 0.00 0.00 4.63
1768 8106 0.318699 CAGTGTCGAAGTTGCCTCGA 60.319 55.000 0.00 0.00 0.00 4.04
1769 8107 0.039074 AGTGTCGAAGTTGCCTCGAG 60.039 55.000 5.13 5.13 36.53 4.04
1770 8108 0.039437 GTGTCGAAGTTGCCTCGAGA 60.039 55.000 15.71 0.00 36.53 4.04
1771 8109 0.888619 TGTCGAAGTTGCCTCGAGAT 59.111 50.000 15.71 0.00 36.53 2.75
1772 8110 1.272490 TGTCGAAGTTGCCTCGAGATT 59.728 47.619 15.71 0.12 36.53 2.40
1773 8111 2.288825 TGTCGAAGTTGCCTCGAGATTT 60.289 45.455 15.71 0.00 36.53 2.17
1774 8112 2.092838 GTCGAAGTTGCCTCGAGATTTG 59.907 50.000 15.71 0.00 36.53 2.32
1775 8113 2.069273 CGAAGTTGCCTCGAGATTTGT 58.931 47.619 15.71 0.00 0.00 2.83
1776 8114 3.057104 TCGAAGTTGCCTCGAGATTTGTA 60.057 43.478 15.71 0.00 0.00 2.41
1777 8115 3.060895 CGAAGTTGCCTCGAGATTTGTAC 59.939 47.826 15.71 3.19 0.00 2.90
1778 8116 3.963428 AGTTGCCTCGAGATTTGTACT 57.037 42.857 15.71 5.48 0.00 2.73
1782 8120 3.717707 TGCCTCGAGATTTGTACTATGC 58.282 45.455 15.71 4.41 0.00 3.14
1783 8121 2.726760 GCCTCGAGATTTGTACTATGCG 59.273 50.000 15.71 0.00 0.00 4.73
1795 8133 9.459640 GATTTGTACTATGCGATACTACTTTGA 57.540 33.333 0.00 0.00 0.00 2.69
1796 8134 8.851960 TTTGTACTATGCGATACTACTTTGAG 57.148 34.615 0.00 0.00 0.00 3.02
1797 8135 7.563888 TGTACTATGCGATACTACTTTGAGT 57.436 36.000 0.00 0.00 0.00 3.41
1802 8140 8.630917 ACTATGCGATACTACTTTGAGTTGTAT 58.369 33.333 12.66 12.66 45.23 2.29
1813 8151 6.459923 ACTTTGAGTTGTATTCCTCTCACTC 58.540 40.000 0.00 0.00 36.80 3.51
1817 8155 5.540337 TGAGTTGTATTCCTCTCACTCTTGT 59.460 40.000 0.00 0.00 32.95 3.16
1839 8177 7.493743 TGTCTTTTATGCATGCATTTGTTTT 57.506 28.000 36.23 15.49 37.82 2.43
1850 8188 8.502387 TGCATGCATTTGTTTTAGTTTTATTCC 58.498 29.630 18.46 0.00 0.00 3.01
1855 8193 8.641155 GCATTTGTTTTAGTTTTATTCCGGTAC 58.359 33.333 0.00 0.00 0.00 3.34
1961 8299 2.614057 GACATAAACCATTCTCCAGCCG 59.386 50.000 0.00 0.00 0.00 5.52
2064 8406 6.803154 AACTGAGTAGTTTTAACATGCTCC 57.197 37.500 0.00 0.00 44.57 4.70
2065 8407 5.246307 ACTGAGTAGTTTTAACATGCTCCC 58.754 41.667 0.00 0.00 31.66 4.30
2066 8408 5.013183 ACTGAGTAGTTTTAACATGCTCCCT 59.987 40.000 0.00 0.00 31.66 4.20
2067 8409 5.488341 TGAGTAGTTTTAACATGCTCCCTC 58.512 41.667 0.00 0.00 0.00 4.30
2068 8410 5.248477 TGAGTAGTTTTAACATGCTCCCTCT 59.752 40.000 0.00 0.00 0.00 3.69
2069 8411 6.128138 AGTAGTTTTAACATGCTCCCTCTT 57.872 37.500 0.00 0.00 0.00 2.85
2070 8412 7.038587 TGAGTAGTTTTAACATGCTCCCTCTTA 60.039 37.037 0.00 0.00 0.00 2.10
2071 8413 7.104290 AGTAGTTTTAACATGCTCCCTCTTAC 58.896 38.462 0.00 0.00 0.00 2.34
2072 8414 5.254115 AGTTTTAACATGCTCCCTCTTACC 58.746 41.667 0.00 0.00 0.00 2.85
2073 8415 3.926058 TTAACATGCTCCCTCTTACCC 57.074 47.619 0.00 0.00 0.00 3.69
2074 8416 0.919710 AACATGCTCCCTCTTACCCC 59.080 55.000 0.00 0.00 0.00 4.95
2075 8417 0.988678 ACATGCTCCCTCTTACCCCC 60.989 60.000 0.00 0.00 0.00 5.40
2076 8418 0.695803 CATGCTCCCTCTTACCCCCT 60.696 60.000 0.00 0.00 0.00 4.79
2077 8419 0.400670 ATGCTCCCTCTTACCCCCTC 60.401 60.000 0.00 0.00 0.00 4.30
2078 8420 1.315216 GCTCCCTCTTACCCCCTCT 59.685 63.158 0.00 0.00 0.00 3.69
2079 8421 0.326713 GCTCCCTCTTACCCCCTCTT 60.327 60.000 0.00 0.00 0.00 2.85
2080 8422 1.906692 GCTCCCTCTTACCCCCTCTTT 60.907 57.143 0.00 0.00 0.00 2.52
2081 8423 2.563406 CTCCCTCTTACCCCCTCTTTT 58.437 52.381 0.00 0.00 0.00 2.27
2082 8424 2.239907 CTCCCTCTTACCCCCTCTTTTG 59.760 54.545 0.00 0.00 0.00 2.44
2083 8425 2.157911 TCCCTCTTACCCCCTCTTTTGA 60.158 50.000 0.00 0.00 0.00 2.69
2084 8426 2.026169 CCCTCTTACCCCCTCTTTTGAC 60.026 54.545 0.00 0.00 0.00 3.18
2085 8427 2.642807 CCTCTTACCCCCTCTTTTGACA 59.357 50.000 0.00 0.00 0.00 3.58
2086 8428 3.267031 CCTCTTACCCCCTCTTTTGACAT 59.733 47.826 0.00 0.00 0.00 3.06
2087 8429 4.265073 CTCTTACCCCCTCTTTTGACATG 58.735 47.826 0.00 0.00 0.00 3.21
2088 8430 3.010138 TCTTACCCCCTCTTTTGACATGG 59.990 47.826 0.00 0.00 0.00 3.66
2089 8431 1.158007 ACCCCCTCTTTTGACATGGT 58.842 50.000 0.00 0.00 0.00 3.55
2090 8432 2.354328 ACCCCCTCTTTTGACATGGTA 58.646 47.619 0.00 0.00 0.00 3.25
2091 8433 2.719705 ACCCCCTCTTTTGACATGGTAA 59.280 45.455 0.00 0.00 0.00 2.85
2092 8434 3.245264 ACCCCCTCTTTTGACATGGTAAG 60.245 47.826 0.00 0.00 0.00 2.34
2093 8435 3.010138 CCCCCTCTTTTGACATGGTAAGA 59.990 47.826 0.00 0.00 0.00 2.10
2094 8436 4.265073 CCCCTCTTTTGACATGGTAAGAG 58.735 47.826 15.63 15.63 41.94 2.85
2095 8437 4.263506 CCCCTCTTTTGACATGGTAAGAGT 60.264 45.833 18.62 0.00 41.13 3.24
2096 8438 5.045869 CCCCTCTTTTGACATGGTAAGAGTA 60.046 44.000 18.62 2.99 41.13 2.59
2097 8439 6.353082 CCCCTCTTTTGACATGGTAAGAGTAT 60.353 42.308 18.62 0.00 41.13 2.12
2098 8440 7.147549 CCCCTCTTTTGACATGGTAAGAGTATA 60.148 40.741 18.62 0.00 41.13 1.47
2099 8441 8.432805 CCCTCTTTTGACATGGTAAGAGTATAT 58.567 37.037 18.62 0.00 41.13 0.86
2123 8465 6.656632 AATAGATCTAAGCCGTTGATCTCA 57.343 37.500 6.52 4.33 43.80 3.27
2124 8466 6.849085 ATAGATCTAAGCCGTTGATCTCAT 57.151 37.500 6.52 5.84 43.80 2.90
2125 8467 5.543507 AGATCTAAGCCGTTGATCTCATT 57.456 39.130 0.00 0.00 41.95 2.57
2126 8468 6.656632 AGATCTAAGCCGTTGATCTCATTA 57.343 37.500 0.00 0.00 41.95 1.90
2127 8469 7.055667 AGATCTAAGCCGTTGATCTCATTAA 57.944 36.000 0.00 0.00 41.95 1.40
2128 8470 7.675062 AGATCTAAGCCGTTGATCTCATTAAT 58.325 34.615 0.00 0.00 41.95 1.40
2129 8471 7.816995 AGATCTAAGCCGTTGATCTCATTAATC 59.183 37.037 0.00 0.00 41.95 1.75
2130 8472 6.816136 TCTAAGCCGTTGATCTCATTAATCA 58.184 36.000 0.00 0.00 0.00 2.57
2131 8473 5.998454 AAGCCGTTGATCTCATTAATCAG 57.002 39.130 0.00 0.00 34.76 2.90
2132 8474 5.028549 AGCCGTTGATCTCATTAATCAGT 57.971 39.130 0.00 0.00 34.76 3.41
2133 8475 4.813161 AGCCGTTGATCTCATTAATCAGTG 59.187 41.667 0.00 0.00 34.76 3.66
2134 8476 4.024556 GCCGTTGATCTCATTAATCAGTGG 60.025 45.833 0.00 0.00 34.76 4.00
2135 8477 5.118990 CCGTTGATCTCATTAATCAGTGGT 58.881 41.667 0.00 0.00 34.76 4.16
2136 8478 5.235186 CCGTTGATCTCATTAATCAGTGGTC 59.765 44.000 0.00 0.00 34.76 4.02
2137 8479 6.045318 CGTTGATCTCATTAATCAGTGGTCT 58.955 40.000 0.00 0.00 34.76 3.85
2138 8480 6.019237 CGTTGATCTCATTAATCAGTGGTCTG 60.019 42.308 0.00 0.00 42.54 3.51
2151 8493 6.911250 TCAGTGGTCTGATTAACTCTTACA 57.089 37.500 0.00 0.00 44.58 2.41
2152 8494 7.482169 TCAGTGGTCTGATTAACTCTTACAT 57.518 36.000 0.00 0.00 44.58 2.29
2153 8495 7.907389 TCAGTGGTCTGATTAACTCTTACATT 58.093 34.615 0.00 0.00 44.58 2.71
2154 8496 8.035394 TCAGTGGTCTGATTAACTCTTACATTC 58.965 37.037 0.00 0.00 44.58 2.67
2155 8497 8.037758 CAGTGGTCTGATTAACTCTTACATTCT 58.962 37.037 0.00 0.00 43.76 2.40
2156 8498 8.598041 AGTGGTCTGATTAACTCTTACATTCTT 58.402 33.333 0.00 0.00 0.00 2.52
2157 8499 9.220767 GTGGTCTGATTAACTCTTACATTCTTT 57.779 33.333 0.00 0.00 0.00 2.52
2158 8500 9.436957 TGGTCTGATTAACTCTTACATTCTTTC 57.563 33.333 0.00 0.00 0.00 2.62
2159 8501 8.884726 GGTCTGATTAACTCTTACATTCTTTCC 58.115 37.037 0.00 0.00 0.00 3.13
2160 8502 9.660180 GTCTGATTAACTCTTACATTCTTTCCT 57.340 33.333 0.00 0.00 0.00 3.36
2178 8520 8.817092 TCTTTCCTTACATGTAAAAATAGGGG 57.183 34.615 18.55 13.94 0.00 4.79
2179 8521 7.837187 TCTTTCCTTACATGTAAAAATAGGGGG 59.163 37.037 18.55 13.30 0.00 5.40
2180 8522 6.661740 TCCTTACATGTAAAAATAGGGGGT 57.338 37.500 18.55 0.00 0.00 4.95
2181 8523 7.768324 TCCTTACATGTAAAAATAGGGGGTA 57.232 36.000 18.55 0.00 0.00 3.69
2182 8524 8.172555 TCCTTACATGTAAAAATAGGGGGTAA 57.827 34.615 18.55 0.00 0.00 2.85
2183 8525 8.276477 TCCTTACATGTAAAAATAGGGGGTAAG 58.724 37.037 18.55 4.31 36.55 2.34
2184 8526 8.276477 CCTTACATGTAAAAATAGGGGGTAAGA 58.724 37.037 18.55 0.00 38.12 2.10
2185 8527 9.338622 CTTACATGTAAAAATAGGGGGTAAGAG 57.661 37.037 18.55 0.00 38.12 2.85
2186 8528 6.669631 ACATGTAAAAATAGGGGGTAAGAGG 58.330 40.000 0.00 0.00 0.00 3.69
2187 8529 6.449041 ACATGTAAAAATAGGGGGTAAGAGGA 59.551 38.462 0.00 0.00 0.00 3.71
2188 8530 6.973700 TGTAAAAATAGGGGGTAAGAGGAA 57.026 37.500 0.00 0.00 0.00 3.36
2189 8531 6.965607 TGTAAAAATAGGGGGTAAGAGGAAG 58.034 40.000 0.00 0.00 0.00 3.46
2190 8532 4.521536 AAAATAGGGGGTAAGAGGAAGC 57.478 45.455 0.00 0.00 0.00 3.86
2191 8533 2.889522 ATAGGGGGTAAGAGGAAGCA 57.110 50.000 0.00 0.00 0.00 3.91
2192 8534 2.889522 TAGGGGGTAAGAGGAAGCAT 57.110 50.000 0.00 0.00 0.00 3.79
2193 8535 1.216990 AGGGGGTAAGAGGAAGCATG 58.783 55.000 0.00 0.00 0.00 4.06
2194 8536 0.919710 GGGGGTAAGAGGAAGCATGT 59.080 55.000 0.00 0.00 0.00 3.21
2195 8537 1.285078 GGGGGTAAGAGGAAGCATGTT 59.715 52.381 0.00 0.00 0.00 2.71
2196 8538 2.508300 GGGGGTAAGAGGAAGCATGTTA 59.492 50.000 0.00 0.00 0.00 2.41
2197 8539 3.053917 GGGGGTAAGAGGAAGCATGTTAA 60.054 47.826 0.00 0.00 0.00 2.01
2198 8540 4.569015 GGGGGTAAGAGGAAGCATGTTAAA 60.569 45.833 0.00 0.00 0.00 1.52
2199 8541 5.014202 GGGGTAAGAGGAAGCATGTTAAAA 58.986 41.667 0.00 0.00 0.00 1.52
2200 8542 5.656859 GGGGTAAGAGGAAGCATGTTAAAAT 59.343 40.000 0.00 0.00 0.00 1.82
2201 8543 6.154534 GGGGTAAGAGGAAGCATGTTAAAATT 59.845 38.462 0.00 0.00 0.00 1.82
2202 8544 7.310423 GGGGTAAGAGGAAGCATGTTAAAATTT 60.310 37.037 0.00 0.00 0.00 1.82
2203 8545 7.545615 GGGTAAGAGGAAGCATGTTAAAATTTG 59.454 37.037 0.00 0.00 0.00 2.32
2204 8546 7.063426 GGTAAGAGGAAGCATGTTAAAATTTGC 59.937 37.037 0.00 0.00 35.34 3.68
2205 8547 5.482006 AGAGGAAGCATGTTAAAATTTGCC 58.518 37.500 0.00 0.00 35.71 4.52
2206 8548 5.011943 AGAGGAAGCATGTTAAAATTTGCCA 59.988 36.000 0.00 0.00 35.71 4.92
2207 8549 5.807909 AGGAAGCATGTTAAAATTTGCCAT 58.192 33.333 0.00 0.00 35.71 4.40
2208 8550 6.945218 AGGAAGCATGTTAAAATTTGCCATA 58.055 32.000 0.00 0.00 35.71 2.74
2209 8551 7.393216 AGGAAGCATGTTAAAATTTGCCATAA 58.607 30.769 0.00 0.00 35.71 1.90
2210 8552 7.882271 AGGAAGCATGTTAAAATTTGCCATAAA 59.118 29.630 0.00 0.00 35.71 1.40
2211 8553 8.510505 GGAAGCATGTTAAAATTTGCCATAAAA 58.489 29.630 0.00 0.00 35.71 1.52
2212 8554 9.890352 GAAGCATGTTAAAATTTGCCATAAAAA 57.110 25.926 0.00 0.00 35.71 1.94
2213 8555 9.676195 AAGCATGTTAAAATTTGCCATAAAAAC 57.324 25.926 0.00 0.00 35.71 2.43
2214 8556 9.065798 AGCATGTTAAAATTTGCCATAAAAACT 57.934 25.926 0.00 0.00 35.71 2.66
2224 8566 9.474313 AATTTGCCATAAAAACTATAGTGAGGA 57.526 29.630 6.06 0.00 0.00 3.71
2225 8567 9.646522 ATTTGCCATAAAAACTATAGTGAGGAT 57.353 29.630 6.06 0.00 0.00 3.24
2235 8577 9.853177 AAAACTATAGTGAGGATATTCCCTTTG 57.147 33.333 6.06 0.00 37.19 2.77
2236 8578 8.568617 AACTATAGTGAGGATATTCCCTTTGT 57.431 34.615 6.06 0.00 37.19 2.83
2237 8579 9.670442 AACTATAGTGAGGATATTCCCTTTGTA 57.330 33.333 6.06 0.00 37.19 2.41
2238 8580 9.670442 ACTATAGTGAGGATATTCCCTTTGTAA 57.330 33.333 4.10 0.00 37.19 2.41
2245 8587 9.131791 TGAGGATATTCCCTTTGTAAATAAAGC 57.868 33.333 0.00 0.00 37.19 3.51
2246 8588 8.166422 AGGATATTCCCTTTGTAAATAAAGCG 57.834 34.615 0.00 0.00 37.19 4.68
2247 8589 7.230712 AGGATATTCCCTTTGTAAATAAAGCGG 59.769 37.037 0.00 0.00 37.19 5.52
2248 8590 5.592104 ATTCCCTTTGTAAATAAAGCGGG 57.408 39.130 0.00 0.00 36.55 6.13
2249 8591 2.756207 TCCCTTTGTAAATAAAGCGGGC 59.244 45.455 0.00 0.00 36.55 6.13
2250 8592 2.494073 CCCTTTGTAAATAAAGCGGGCA 59.506 45.455 0.00 0.00 36.55 5.36
2251 8593 3.132111 CCCTTTGTAAATAAAGCGGGCAT 59.868 43.478 0.00 0.00 36.55 4.40
2252 8594 4.382577 CCCTTTGTAAATAAAGCGGGCATT 60.383 41.667 0.00 0.00 36.55 3.56
2253 8595 4.566360 CCTTTGTAAATAAAGCGGGCATTG 59.434 41.667 0.00 0.00 36.55 2.82
2254 8596 3.791973 TGTAAATAAAGCGGGCATTGG 57.208 42.857 0.00 0.00 0.00 3.16
2255 8597 3.093057 TGTAAATAAAGCGGGCATTGGT 58.907 40.909 0.00 0.00 0.00 3.67
2256 8598 3.511934 TGTAAATAAAGCGGGCATTGGTT 59.488 39.130 0.00 0.00 0.00 3.67
2257 8599 3.694043 AAATAAAGCGGGCATTGGTTT 57.306 38.095 6.17 6.17 39.96 3.27
2258 8600 3.694043 AATAAAGCGGGCATTGGTTTT 57.306 38.095 6.20 0.00 38.02 2.43
2259 8601 3.694043 ATAAAGCGGGCATTGGTTTTT 57.306 38.095 6.20 0.00 38.02 1.94
2333 8792 8.893219 ATATCACAATACTGACCTTGTACATG 57.107 34.615 0.00 0.00 33.96 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.303317 GGACACCGTGCTTCCCAAT 60.303 57.895 0.00 0.00 0.00 3.16
59 66 0.664761 CATGCCTAATCCACGCCTTG 59.335 55.000 0.00 0.00 0.00 3.61
71 78 1.078214 GCCTGTGACAGCATGCCTA 60.078 57.895 15.66 0.00 42.53 3.93
77 84 4.146058 CAGTTGCCTGTGACAGCA 57.854 55.556 7.16 6.35 33.80 4.41
87 94 0.947244 CAACTCCAGTCACAGTTGCC 59.053 55.000 0.00 0.00 42.23 4.52
105 112 2.046023 CCACTCCATGCTTCGCCA 60.046 61.111 0.00 0.00 0.00 5.69
130 137 1.140312 TCAAGGGAGACAAACCAGCT 58.860 50.000 0.00 0.00 0.00 4.24
196 233 3.375922 CCGTTATTTAACCCTTGATGCGT 59.624 43.478 0.00 0.00 32.69 5.24
198 235 3.380320 AGCCGTTATTTAACCCTTGATGC 59.620 43.478 0.00 0.00 32.69 3.91
339 383 2.472934 CGCGGGAAAACGTACTGC 59.527 61.111 0.00 0.00 35.98 4.40
430 5124 4.537751 AGGTCGATATGGAGAGAGTGAAA 58.462 43.478 0.00 0.00 0.00 2.69
444 5138 1.471119 GGTGACAGTGGAGGTCGATA 58.529 55.000 0.00 0.00 38.10 2.92
464 5160 0.577269 GATGGCTACGTTCGATGCAC 59.423 55.000 0.00 0.00 0.00 4.57
575 5328 0.605319 TTTTCCCTGTGCGCGATCTT 60.605 50.000 12.10 0.00 0.00 2.40
577 5330 1.134694 GTTTTCCCTGTGCGCGATC 59.865 57.895 12.10 1.33 0.00 3.69
578 5331 1.577328 CTGTTTTCCCTGTGCGCGAT 61.577 55.000 12.10 0.00 0.00 4.58
579 5332 2.203084 TGTTTTCCCTGTGCGCGA 60.203 55.556 12.10 0.00 0.00 5.87
582 5335 0.738389 ACAACTGTTTTCCCTGTGCG 59.262 50.000 0.00 0.00 0.00 5.34
583 5336 1.268539 CGACAACTGTTTTCCCTGTGC 60.269 52.381 1.41 0.00 0.00 4.57
585 5338 2.702592 TCGACAACTGTTTTCCCTGT 57.297 45.000 1.41 0.00 0.00 4.00
586 5339 2.290641 CCTTCGACAACTGTTTTCCCTG 59.709 50.000 1.41 0.00 0.00 4.45
588 5341 1.607148 CCCTTCGACAACTGTTTTCCC 59.393 52.381 1.41 0.00 0.00 3.97
589 5342 2.567985 TCCCTTCGACAACTGTTTTCC 58.432 47.619 1.41 0.00 0.00 3.13
591 5344 2.949644 CCTTCCCTTCGACAACTGTTTT 59.050 45.455 0.00 0.00 0.00 2.43
592 5345 2.171870 TCCTTCCCTTCGACAACTGTTT 59.828 45.455 0.00 0.00 0.00 2.83
593 5346 1.766496 TCCTTCCCTTCGACAACTGTT 59.234 47.619 0.00 0.00 0.00 3.16
594 5347 1.344763 CTCCTTCCCTTCGACAACTGT 59.655 52.381 0.00 0.00 0.00 3.55
595 5348 1.618837 TCTCCTTCCCTTCGACAACTG 59.381 52.381 0.00 0.00 0.00 3.16
596 5349 1.896465 CTCTCCTTCCCTTCGACAACT 59.104 52.381 0.00 0.00 0.00 3.16
597 5350 1.673329 GCTCTCCTTCCCTTCGACAAC 60.673 57.143 0.00 0.00 0.00 3.32
598 5351 0.608640 GCTCTCCTTCCCTTCGACAA 59.391 55.000 0.00 0.00 0.00 3.18
599 5352 0.541998 TGCTCTCCTTCCCTTCGACA 60.542 55.000 0.00 0.00 0.00 4.35
600 5353 0.608640 TTGCTCTCCTTCCCTTCGAC 59.391 55.000 0.00 0.00 0.00 4.20
601 5354 0.898320 CTTGCTCTCCTTCCCTTCGA 59.102 55.000 0.00 0.00 0.00 3.71
602 5355 0.742635 GCTTGCTCTCCTTCCCTTCG 60.743 60.000 0.00 0.00 0.00 3.79
603 5356 0.393673 GGCTTGCTCTCCTTCCCTTC 60.394 60.000 0.00 0.00 0.00 3.46
604 5357 1.136329 TGGCTTGCTCTCCTTCCCTT 61.136 55.000 0.00 0.00 0.00 3.95
605 5358 1.539869 TGGCTTGCTCTCCTTCCCT 60.540 57.895 0.00 0.00 0.00 4.20
606 5359 1.377856 GTGGCTTGCTCTCCTTCCC 60.378 63.158 0.00 0.00 0.00 3.97
607 5360 1.377856 GGTGGCTTGCTCTCCTTCC 60.378 63.158 0.00 0.00 0.00 3.46
608 5361 1.743252 CGGTGGCTTGCTCTCCTTC 60.743 63.158 0.00 0.00 0.00 3.46
609 5362 2.348998 CGGTGGCTTGCTCTCCTT 59.651 61.111 0.00 0.00 0.00 3.36
610 5363 3.710722 CCGGTGGCTTGCTCTCCT 61.711 66.667 0.00 0.00 0.00 3.69
732 5520 3.357079 GTGGCAGCGTGGTCTTGG 61.357 66.667 0.00 0.00 0.00 3.61
737 5525 2.591715 GAAGTGTGGCAGCGTGGT 60.592 61.111 0.00 0.00 0.00 4.16
771 5565 2.811317 CTTCCCAGCTGTCGTCGC 60.811 66.667 13.81 0.00 0.00 5.19
777 5571 3.241530 TGCCGTCTTCCCAGCTGT 61.242 61.111 13.81 0.00 0.00 4.40
780 5583 2.743928 CAGTGCCGTCTTCCCAGC 60.744 66.667 0.00 0.00 0.00 4.85
782 5585 4.329545 GCCAGTGCCGTCTTCCCA 62.330 66.667 0.00 0.00 0.00 4.37
807 5610 1.373622 TTGCTCGTTCGCCAATCGA 60.374 52.632 0.00 0.00 46.88 3.59
811 5614 1.092921 ACTTGTTGCTCGTTCGCCAA 61.093 50.000 0.00 0.00 0.00 4.52
815 5618 0.508641 CCTCACTTGTTGCTCGTTCG 59.491 55.000 0.00 0.00 0.00 3.95
816 5619 0.868406 CCCTCACTTGTTGCTCGTTC 59.132 55.000 0.00 0.00 0.00 3.95
817 5620 0.180406 ACCCTCACTTGTTGCTCGTT 59.820 50.000 0.00 0.00 0.00 3.85
834 5643 1.066502 ACACCACCAAACAAGCAAACC 60.067 47.619 0.00 0.00 0.00 3.27
839 5648 2.663826 TTGAACACCACCAAACAAGC 57.336 45.000 0.00 0.00 0.00 4.01
840 5649 2.865551 GCATTGAACACCACCAAACAAG 59.134 45.455 0.00 0.00 0.00 3.16
842 5651 1.827344 TGCATTGAACACCACCAAACA 59.173 42.857 0.00 0.00 0.00 2.83
844 5653 3.464907 CATTGCATTGAACACCACCAAA 58.535 40.909 2.33 0.00 0.00 3.28
845 5654 2.806019 GCATTGCATTGAACACCACCAA 60.806 45.455 12.66 0.00 0.00 3.67
846 5655 1.270199 GCATTGCATTGAACACCACCA 60.270 47.619 12.66 0.00 0.00 4.17
847 5656 1.270199 TGCATTGCATTGAACACCACC 60.270 47.619 7.38 0.00 31.71 4.61
848 5657 2.063266 CTGCATTGCATTGAACACCAC 58.937 47.619 12.53 0.00 38.13 4.16
877 5689 1.667830 CACGAAAGAGAAGGGCGCA 60.668 57.895 10.83 0.00 0.00 6.09
984 5818 1.691976 TCCATCTTCACCTTCACGTGT 59.308 47.619 16.51 0.00 35.18 4.49
1126 5960 3.525545 GTCCCCGTCCTCGTAGGC 61.526 72.222 0.00 0.00 34.61 3.93
1263 6110 1.831652 AAGTCCCTGCAAGAGGTCGG 61.832 60.000 0.00 0.00 40.87 4.79
1301 6148 2.868583 CGGTTGCATGAGTATCTTGAGG 59.131 50.000 0.00 0.00 42.34 3.86
1317 6180 1.737838 ATGCCATGTGTAGTCGGTTG 58.262 50.000 0.00 0.00 0.00 3.77
1330 6205 3.511146 CCAAACTCAACCAGTAATGCCAT 59.489 43.478 0.00 0.00 32.30 4.40
1338 6213 0.818040 GACGCCCAAACTCAACCAGT 60.818 55.000 0.00 0.00 36.64 4.00
1451 6756 4.575645 CGTATACTAAAATTCCCCCGCAAA 59.424 41.667 0.56 0.00 0.00 3.68
1457 6762 5.234972 CGTTGGTCGTATACTAAAATTCCCC 59.765 44.000 0.56 0.00 29.38 4.81
1463 6768 7.786114 CAACTTTCGTTGGTCGTATACTAAAA 58.214 34.615 0.56 0.00 45.28 1.52
1498 7836 1.305297 TCTCATCAGCCCAGACCGT 60.305 57.895 0.00 0.00 0.00 4.83
1502 7840 1.620739 GCCACTCTCATCAGCCCAGA 61.621 60.000 0.00 0.00 0.00 3.86
1505 7843 2.202987 CGCCACTCTCATCAGCCC 60.203 66.667 0.00 0.00 0.00 5.19
1521 7859 1.357690 CTTATGGTGCCTGCATGCG 59.642 57.895 14.09 7.87 0.00 4.73
1539 7877 5.022021 GCAACGATGACACATTTAGTAAGC 58.978 41.667 0.00 0.00 0.00 3.09
1540 7878 5.248087 CGCAACGATGACACATTTAGTAAG 58.752 41.667 0.00 0.00 0.00 2.34
1544 7882 2.415168 ACCGCAACGATGACACATTTAG 59.585 45.455 0.00 0.00 0.00 1.85
1546 7884 1.234821 ACCGCAACGATGACACATTT 58.765 45.000 0.00 0.00 0.00 2.32
1549 7887 0.249699 AGAACCGCAACGATGACACA 60.250 50.000 0.00 0.00 0.00 3.72
1555 7893 1.298859 GAGGCAAGAACCGCAACGAT 61.299 55.000 0.00 0.00 33.69 3.73
1577 7915 2.210961 TGTCGACGTTGCATTTTGGTA 58.789 42.857 11.62 0.00 0.00 3.25
1581 7919 6.861055 AGAAAATATTGTCGACGTTGCATTTT 59.139 30.769 11.62 15.84 0.00 1.82
1584 7922 5.545658 AGAAAATATTGTCGACGTTGCAT 57.454 34.783 11.62 0.49 0.00 3.96
1597 7935 6.202762 TCACATATCGCAGCGAAGAAAATATT 59.797 34.615 23.76 4.09 39.99 1.28
1610 7948 3.488678 GTCACATCACTCACATATCGCAG 59.511 47.826 0.00 0.00 0.00 5.18
1611 7949 3.131046 AGTCACATCACTCACATATCGCA 59.869 43.478 0.00 0.00 0.00 5.10
1617 7955 5.640783 CACATACAAGTCACATCACTCACAT 59.359 40.000 0.00 0.00 0.00 3.21
1619 7957 4.991056 ACACATACAAGTCACATCACTCAC 59.009 41.667 0.00 0.00 0.00 3.51
1620 7958 4.990426 CACACATACAAGTCACATCACTCA 59.010 41.667 0.00 0.00 0.00 3.41
1622 7960 3.748048 GCACACATACAAGTCACATCACT 59.252 43.478 0.00 0.00 0.00 3.41
1656 7994 0.877071 ATCAGGCAAAACTGTCGCAG 59.123 50.000 5.47 5.47 39.48 5.18
1659 7997 3.243367 TGGAAAATCAGGCAAAACTGTCG 60.243 43.478 0.00 0.00 39.48 4.35
1674 8012 8.598202 ATTTACCCGGTTAATTAGTGGAAAAT 57.402 30.769 0.00 0.00 0.00 1.82
1681 8019 9.524496 AAGAAGAAATTTACCCGGTTAATTAGT 57.476 29.630 13.55 1.33 27.21 2.24
1704 8042 9.659830 GCAAAGAGTTTTCGTTAATTAAGAAGA 57.340 29.630 0.00 0.00 0.00 2.87
1705 8043 9.445786 TGCAAAGAGTTTTCGTTAATTAAGAAG 57.554 29.630 0.00 0.00 0.00 2.85
1706 8044 9.228636 GTGCAAAGAGTTTTCGTTAATTAAGAA 57.771 29.630 0.00 2.60 0.00 2.52
1707 8045 8.399425 TGTGCAAAGAGTTTTCGTTAATTAAGA 58.601 29.630 0.00 0.00 0.00 2.10
1708 8046 8.555166 TGTGCAAAGAGTTTTCGTTAATTAAG 57.445 30.769 0.00 0.00 0.00 1.85
1709 8047 8.963130 CATGTGCAAAGAGTTTTCGTTAATTAA 58.037 29.630 0.00 0.00 0.00 1.40
1710 8048 7.114247 GCATGTGCAAAGAGTTTTCGTTAATTA 59.886 33.333 0.00 0.00 41.59 1.40
1711 8049 6.074356 GCATGTGCAAAGAGTTTTCGTTAATT 60.074 34.615 0.00 0.00 41.59 1.40
1712 8050 5.402270 GCATGTGCAAAGAGTTTTCGTTAAT 59.598 36.000 0.00 0.00 41.59 1.40
1713 8051 4.737765 GCATGTGCAAAGAGTTTTCGTTAA 59.262 37.500 0.00 0.00 41.59 2.01
1714 8052 4.286910 GCATGTGCAAAGAGTTTTCGTTA 58.713 39.130 0.00 0.00 41.59 3.18
1715 8053 3.115554 GCATGTGCAAAGAGTTTTCGTT 58.884 40.909 0.00 0.00 41.59 3.85
1716 8054 2.543653 GGCATGTGCAAAGAGTTTTCGT 60.544 45.455 7.36 0.00 44.36 3.85
1717 8055 2.053627 GGCATGTGCAAAGAGTTTTCG 58.946 47.619 7.36 0.00 44.36 3.46
1718 8056 3.096489 TGGCATGTGCAAAGAGTTTTC 57.904 42.857 7.36 0.00 44.36 2.29
1719 8057 3.395639 CATGGCATGTGCAAAGAGTTTT 58.604 40.909 19.32 0.00 44.36 2.43
1720 8058 2.868839 GCATGGCATGTGCAAAGAGTTT 60.869 45.455 26.94 0.00 44.36 2.66
1721 8059 1.337447 GCATGGCATGTGCAAAGAGTT 60.337 47.619 26.94 0.00 44.36 3.01
1722 8060 0.245539 GCATGGCATGTGCAAAGAGT 59.754 50.000 26.94 0.00 44.36 3.24
1723 8061 3.044809 GCATGGCATGTGCAAAGAG 57.955 52.632 26.94 0.28 44.36 2.85
1734 8072 2.684374 GACACTGTATTGATGCATGGCA 59.316 45.455 2.46 0.00 44.86 4.92
1735 8073 2.286595 CGACACTGTATTGATGCATGGC 60.287 50.000 2.46 0.00 0.00 4.40
1736 8074 3.197265 TCGACACTGTATTGATGCATGG 58.803 45.455 2.46 0.00 0.00 3.66
1737 8075 4.330894 ACTTCGACACTGTATTGATGCATG 59.669 41.667 2.46 0.00 0.00 4.06
1738 8076 4.507710 ACTTCGACACTGTATTGATGCAT 58.492 39.130 0.00 0.00 0.00 3.96
1739 8077 3.925379 ACTTCGACACTGTATTGATGCA 58.075 40.909 0.00 0.00 0.00 3.96
1740 8078 4.641954 CAACTTCGACACTGTATTGATGC 58.358 43.478 0.00 0.00 0.00 3.91
1741 8079 4.436050 GGCAACTTCGACACTGTATTGATG 60.436 45.833 0.00 0.00 0.00 3.07
1742 8080 3.684788 GGCAACTTCGACACTGTATTGAT 59.315 43.478 0.00 0.00 0.00 2.57
1743 8081 3.064207 GGCAACTTCGACACTGTATTGA 58.936 45.455 0.00 0.00 0.00 2.57
1744 8082 3.455619 GGCAACTTCGACACTGTATTG 57.544 47.619 0.00 0.00 0.00 1.90
1759 8097 4.025647 GCATAGTACAAATCTCGAGGCAAC 60.026 45.833 13.56 3.16 0.00 4.17
1760 8098 4.119862 GCATAGTACAAATCTCGAGGCAA 58.880 43.478 13.56 0.00 0.00 4.52
1761 8099 3.717707 GCATAGTACAAATCTCGAGGCA 58.282 45.455 13.56 0.00 0.00 4.75
1762 8100 2.726760 CGCATAGTACAAATCTCGAGGC 59.273 50.000 13.56 2.14 0.00 4.70
1763 8101 4.224715 TCGCATAGTACAAATCTCGAGG 57.775 45.455 13.56 0.00 0.00 4.63
1764 8102 6.604012 AGTATCGCATAGTACAAATCTCGAG 58.396 40.000 5.93 5.93 0.00 4.04
1765 8103 6.555812 AGTATCGCATAGTACAAATCTCGA 57.444 37.500 0.00 0.81 0.00 4.04
1766 8104 7.519843 AGTAGTATCGCATAGTACAAATCTCG 58.480 38.462 16.63 0.00 41.81 4.04
1767 8105 9.680315 AAAGTAGTATCGCATAGTACAAATCTC 57.320 33.333 16.63 0.00 41.81 2.75
1768 8106 9.464714 CAAAGTAGTATCGCATAGTACAAATCT 57.535 33.333 16.63 0.00 41.81 2.40
1769 8107 9.459640 TCAAAGTAGTATCGCATAGTACAAATC 57.540 33.333 16.63 0.00 41.81 2.17
1770 8108 9.464714 CTCAAAGTAGTATCGCATAGTACAAAT 57.535 33.333 16.63 0.00 41.81 2.32
1771 8109 8.464404 ACTCAAAGTAGTATCGCATAGTACAAA 58.536 33.333 16.63 0.00 41.81 2.83
1772 8110 7.993101 ACTCAAAGTAGTATCGCATAGTACAA 58.007 34.615 16.63 5.52 41.81 2.41
1773 8111 7.563888 ACTCAAAGTAGTATCGCATAGTACA 57.436 36.000 16.63 3.43 41.81 2.90
1774 8112 7.914346 ACAACTCAAAGTAGTATCGCATAGTAC 59.086 37.037 10.66 10.66 40.40 2.73
1775 8113 7.993101 ACAACTCAAAGTAGTATCGCATAGTA 58.007 34.615 0.00 0.00 0.00 1.82
1776 8114 6.864342 ACAACTCAAAGTAGTATCGCATAGT 58.136 36.000 0.00 0.00 0.00 2.12
1777 8115 9.464714 AATACAACTCAAAGTAGTATCGCATAG 57.535 33.333 0.00 0.00 0.00 2.23
1778 8116 9.459640 GAATACAACTCAAAGTAGTATCGCATA 57.540 33.333 0.00 0.00 0.00 3.14
1782 8120 8.407064 AGAGGAATACAACTCAAAGTAGTATCG 58.593 37.037 0.00 0.00 36.20 2.92
1783 8121 9.738832 GAGAGGAATACAACTCAAAGTAGTATC 57.261 37.037 0.00 0.00 36.20 2.24
1795 8133 5.777732 AGACAAGAGTGAGAGGAATACAACT 59.222 40.000 0.00 0.00 0.00 3.16
1796 8134 6.031751 AGACAAGAGTGAGAGGAATACAAC 57.968 41.667 0.00 0.00 0.00 3.32
1797 8135 6.672266 AAGACAAGAGTGAGAGGAATACAA 57.328 37.500 0.00 0.00 0.00 2.41
1802 8140 5.934625 GCATAAAAGACAAGAGTGAGAGGAA 59.065 40.000 0.00 0.00 0.00 3.36
1813 8151 6.715344 ACAAATGCATGCATAAAAGACAAG 57.285 33.333 32.36 15.88 35.31 3.16
1817 8155 8.830201 ACTAAAACAAATGCATGCATAAAAGA 57.170 26.923 32.36 14.01 35.31 2.52
1839 8177 7.721286 TTGAAAACGTACCGGAATAAAACTA 57.279 32.000 9.46 0.00 0.00 2.24
1849 8187 6.428799 TGAAACTTATTTGAAAACGTACCGG 58.571 36.000 0.00 0.00 0.00 5.28
1850 8188 7.895582 TTGAAACTTATTTGAAAACGTACCG 57.104 32.000 0.00 0.00 0.00 4.02
1934 8272 7.093945 GGCTGGAGAATGGTTTATGTCTAAAAA 60.094 37.037 0.00 0.00 0.00 1.94
1935 8273 6.377146 GGCTGGAGAATGGTTTATGTCTAAAA 59.623 38.462 0.00 0.00 0.00 1.52
1936 8274 5.885912 GGCTGGAGAATGGTTTATGTCTAAA 59.114 40.000 0.00 0.00 0.00 1.85
1937 8275 5.437060 GGCTGGAGAATGGTTTATGTCTAA 58.563 41.667 0.00 0.00 0.00 2.10
1938 8276 4.442893 CGGCTGGAGAATGGTTTATGTCTA 60.443 45.833 0.00 0.00 0.00 2.59
1939 8277 3.682718 CGGCTGGAGAATGGTTTATGTCT 60.683 47.826 0.00 0.00 0.00 3.41
1940 8278 2.614057 CGGCTGGAGAATGGTTTATGTC 59.386 50.000 0.00 0.00 0.00 3.06
1941 8279 2.026262 ACGGCTGGAGAATGGTTTATGT 60.026 45.455 0.00 0.00 0.00 2.29
1942 8280 2.643551 ACGGCTGGAGAATGGTTTATG 58.356 47.619 0.00 0.00 0.00 1.90
1943 8281 3.366052 AACGGCTGGAGAATGGTTTAT 57.634 42.857 0.00 0.00 0.00 1.40
2042 8384 5.013183 AGGGAGCATGTTAAAACTACTCAGT 59.987 40.000 0.00 0.00 36.19 3.41
2043 8385 5.491982 AGGGAGCATGTTAAAACTACTCAG 58.508 41.667 0.00 0.00 0.00 3.35
2044 8386 5.248477 AGAGGGAGCATGTTAAAACTACTCA 59.752 40.000 0.00 0.00 0.00 3.41
2045 8387 5.735766 AGAGGGAGCATGTTAAAACTACTC 58.264 41.667 0.00 0.00 0.00 2.59
2046 8388 5.763876 AGAGGGAGCATGTTAAAACTACT 57.236 39.130 0.00 0.00 0.00 2.57
2047 8389 6.315642 GGTAAGAGGGAGCATGTTAAAACTAC 59.684 42.308 0.00 0.00 0.00 2.73
2048 8390 6.412214 GGTAAGAGGGAGCATGTTAAAACTA 58.588 40.000 0.00 0.00 0.00 2.24
2049 8391 5.254115 GGTAAGAGGGAGCATGTTAAAACT 58.746 41.667 0.00 0.00 0.00 2.66
2050 8392 4.398358 GGGTAAGAGGGAGCATGTTAAAAC 59.602 45.833 0.00 0.00 0.00 2.43
2051 8393 4.569015 GGGGTAAGAGGGAGCATGTTAAAA 60.569 45.833 0.00 0.00 0.00 1.52
2052 8394 3.053917 GGGGTAAGAGGGAGCATGTTAAA 60.054 47.826 0.00 0.00 0.00 1.52
2053 8395 2.508300 GGGGTAAGAGGGAGCATGTTAA 59.492 50.000 0.00 0.00 0.00 2.01
2054 8396 2.124411 GGGGTAAGAGGGAGCATGTTA 58.876 52.381 0.00 0.00 0.00 2.41
2055 8397 0.919710 GGGGTAAGAGGGAGCATGTT 59.080 55.000 0.00 0.00 0.00 2.71
2056 8398 0.988678 GGGGGTAAGAGGGAGCATGT 60.989 60.000 0.00 0.00 0.00 3.21
2057 8399 0.695803 AGGGGGTAAGAGGGAGCATG 60.696 60.000 0.00 0.00 0.00 4.06
2058 8400 0.400670 GAGGGGGTAAGAGGGAGCAT 60.401 60.000 0.00 0.00 0.00 3.79
2059 8401 1.003051 GAGGGGGTAAGAGGGAGCA 59.997 63.158 0.00 0.00 0.00 4.26
2060 8402 0.326713 AAGAGGGGGTAAGAGGGAGC 60.327 60.000 0.00 0.00 0.00 4.70
2061 8403 2.239907 CAAAAGAGGGGGTAAGAGGGAG 59.760 54.545 0.00 0.00 0.00 4.30
2062 8404 2.157911 TCAAAAGAGGGGGTAAGAGGGA 60.158 50.000 0.00 0.00 0.00 4.20
2063 8405 2.026169 GTCAAAAGAGGGGGTAAGAGGG 60.026 54.545 0.00 0.00 0.00 4.30
2064 8406 2.642807 TGTCAAAAGAGGGGGTAAGAGG 59.357 50.000 0.00 0.00 0.00 3.69
2065 8407 4.265073 CATGTCAAAAGAGGGGGTAAGAG 58.735 47.826 0.00 0.00 0.00 2.85
2066 8408 3.010138 CCATGTCAAAAGAGGGGGTAAGA 59.990 47.826 0.00 0.00 0.00 2.10
2067 8409 3.245264 ACCATGTCAAAAGAGGGGGTAAG 60.245 47.826 0.00 0.00 0.00 2.34
2068 8410 2.719705 ACCATGTCAAAAGAGGGGGTAA 59.280 45.455 0.00 0.00 0.00 2.85
2069 8411 2.354328 ACCATGTCAAAAGAGGGGGTA 58.646 47.619 0.00 0.00 0.00 3.69
2070 8412 1.158007 ACCATGTCAAAAGAGGGGGT 58.842 50.000 0.00 0.00 0.00 4.95
2071 8413 3.010138 TCTTACCATGTCAAAAGAGGGGG 59.990 47.826 0.00 0.00 0.00 5.40
2072 8414 4.263506 ACTCTTACCATGTCAAAAGAGGGG 60.264 45.833 19.36 0.00 45.95 4.79
2073 8415 4.911390 ACTCTTACCATGTCAAAAGAGGG 58.089 43.478 19.36 0.00 45.95 4.30
2097 8439 9.462606 TGAGATCAACGGCTTAGATCTATTATA 57.537 33.333 2.58 0.00 46.15 0.98
2098 8440 8.354711 TGAGATCAACGGCTTAGATCTATTAT 57.645 34.615 2.58 0.00 46.15 1.28
2099 8441 7.761038 TGAGATCAACGGCTTAGATCTATTA 57.239 36.000 2.58 0.00 46.15 0.98
2100 8442 6.656632 TGAGATCAACGGCTTAGATCTATT 57.343 37.500 2.58 0.00 46.15 1.73
2101 8443 6.849085 ATGAGATCAACGGCTTAGATCTAT 57.151 37.500 2.58 0.00 46.15 1.98
2102 8444 6.656632 AATGAGATCAACGGCTTAGATCTA 57.343 37.500 0.00 0.00 46.15 1.98
2104 8446 7.600375 TGATTAATGAGATCAACGGCTTAGATC 59.400 37.037 0.00 0.00 38.70 2.75
2105 8447 7.445121 TGATTAATGAGATCAACGGCTTAGAT 58.555 34.615 0.00 0.00 30.96 1.98
2106 8448 6.816136 TGATTAATGAGATCAACGGCTTAGA 58.184 36.000 0.00 0.00 30.96 2.10
2107 8449 6.703607 ACTGATTAATGAGATCAACGGCTTAG 59.296 38.462 9.05 0.00 33.45 2.18
2108 8450 6.479990 CACTGATTAATGAGATCAACGGCTTA 59.520 38.462 9.05 0.00 33.45 3.09
2109 8451 5.295292 CACTGATTAATGAGATCAACGGCTT 59.705 40.000 9.05 0.00 33.45 4.35
2110 8452 4.813161 CACTGATTAATGAGATCAACGGCT 59.187 41.667 9.05 0.00 33.45 5.52
2111 8453 4.024556 CCACTGATTAATGAGATCAACGGC 60.025 45.833 9.05 0.00 33.45 5.68
2112 8454 5.118990 ACCACTGATTAATGAGATCAACGG 58.881 41.667 9.05 0.00 33.45 4.44
2113 8455 6.019237 CAGACCACTGATTAATGAGATCAACG 60.019 42.308 9.05 0.00 46.03 4.10
2114 8456 7.044181 TCAGACCACTGATTAATGAGATCAAC 58.956 38.462 9.05 0.00 46.55 3.18
2115 8457 7.186570 TCAGACCACTGATTAATGAGATCAA 57.813 36.000 9.05 0.00 46.55 2.57
2116 8458 6.796785 TCAGACCACTGATTAATGAGATCA 57.203 37.500 9.05 0.00 46.55 2.92
2129 8471 8.037758 AGAATGTAAGAGTTAATCAGACCACTG 58.962 37.037 0.00 0.00 44.66 3.66
2130 8472 8.140112 AGAATGTAAGAGTTAATCAGACCACT 57.860 34.615 0.00 0.00 0.00 4.00
2131 8473 8.779354 AAGAATGTAAGAGTTAATCAGACCAC 57.221 34.615 0.00 0.00 0.00 4.16
2132 8474 9.436957 GAAAGAATGTAAGAGTTAATCAGACCA 57.563 33.333 0.00 0.00 0.00 4.02
2133 8475 8.884726 GGAAAGAATGTAAGAGTTAATCAGACC 58.115 37.037 0.00 0.00 0.00 3.85
2134 8476 9.660180 AGGAAAGAATGTAAGAGTTAATCAGAC 57.340 33.333 0.00 0.00 0.00 3.51
2152 8494 9.250246 CCCCTATTTTTACATGTAAGGAAAGAA 57.750 33.333 18.33 7.80 0.00 2.52
2153 8495 7.837187 CCCCCTATTTTTACATGTAAGGAAAGA 59.163 37.037 18.33 13.36 0.00 2.52
2154 8496 7.618117 ACCCCCTATTTTTACATGTAAGGAAAG 59.382 37.037 18.33 14.16 0.00 2.62
2155 8497 7.480437 ACCCCCTATTTTTACATGTAAGGAAA 58.520 34.615 18.33 16.46 0.00 3.13
2156 8498 7.046891 ACCCCCTATTTTTACATGTAAGGAA 57.953 36.000 18.33 16.48 0.00 3.36
2157 8499 6.661740 ACCCCCTATTTTTACATGTAAGGA 57.338 37.500 18.33 12.07 0.00 3.36
2158 8500 8.276477 TCTTACCCCCTATTTTTACATGTAAGG 58.724 37.037 17.36 14.47 35.53 2.69
2159 8501 9.338622 CTCTTACCCCCTATTTTTACATGTAAG 57.661 37.037 17.36 6.48 35.92 2.34
2160 8502 8.276477 CCTCTTACCCCCTATTTTTACATGTAA 58.724 37.037 14.35 14.35 0.00 2.41
2161 8503 7.628505 TCCTCTTACCCCCTATTTTTACATGTA 59.371 37.037 0.08 0.08 0.00 2.29
2162 8504 6.449041 TCCTCTTACCCCCTATTTTTACATGT 59.551 38.462 2.69 2.69 0.00 3.21
2163 8505 6.906848 TCCTCTTACCCCCTATTTTTACATG 58.093 40.000 0.00 0.00 0.00 3.21
2164 8506 7.533923 TTCCTCTTACCCCCTATTTTTACAT 57.466 36.000 0.00 0.00 0.00 2.29
2165 8507 6.579647 GCTTCCTCTTACCCCCTATTTTTACA 60.580 42.308 0.00 0.00 0.00 2.41
2166 8508 5.826737 GCTTCCTCTTACCCCCTATTTTTAC 59.173 44.000 0.00 0.00 0.00 2.01
2167 8509 5.493250 TGCTTCCTCTTACCCCCTATTTTTA 59.507 40.000 0.00 0.00 0.00 1.52
2168 8510 4.293901 TGCTTCCTCTTACCCCCTATTTTT 59.706 41.667 0.00 0.00 0.00 1.94
2169 8511 3.856206 TGCTTCCTCTTACCCCCTATTTT 59.144 43.478 0.00 0.00 0.00 1.82
2170 8512 3.470868 TGCTTCCTCTTACCCCCTATTT 58.529 45.455 0.00 0.00 0.00 1.40
2171 8513 3.145559 TGCTTCCTCTTACCCCCTATT 57.854 47.619 0.00 0.00 0.00 1.73
2172 8514 2.889522 TGCTTCCTCTTACCCCCTAT 57.110 50.000 0.00 0.00 0.00 2.57
2173 8515 2.293586 ACATGCTTCCTCTTACCCCCTA 60.294 50.000 0.00 0.00 0.00 3.53
2174 8516 1.216990 CATGCTTCCTCTTACCCCCT 58.783 55.000 0.00 0.00 0.00 4.79
2175 8517 0.919710 ACATGCTTCCTCTTACCCCC 59.080 55.000 0.00 0.00 0.00 5.40
2176 8518 2.808906 AACATGCTTCCTCTTACCCC 57.191 50.000 0.00 0.00 0.00 4.95
2177 8519 6.775594 ATTTTAACATGCTTCCTCTTACCC 57.224 37.500 0.00 0.00 0.00 3.69
2178 8520 7.063426 GCAAATTTTAACATGCTTCCTCTTACC 59.937 37.037 0.00 0.00 35.93 2.85
2179 8521 7.063426 GGCAAATTTTAACATGCTTCCTCTTAC 59.937 37.037 0.00 0.00 38.79 2.34
2180 8522 7.096551 GGCAAATTTTAACATGCTTCCTCTTA 58.903 34.615 0.00 0.00 38.79 2.10
2181 8523 5.934043 GGCAAATTTTAACATGCTTCCTCTT 59.066 36.000 0.00 0.00 38.79 2.85
2182 8524 5.011943 TGGCAAATTTTAACATGCTTCCTCT 59.988 36.000 0.00 0.00 38.79 3.69
2183 8525 5.237048 TGGCAAATTTTAACATGCTTCCTC 58.763 37.500 0.00 0.00 38.79 3.71
2184 8526 5.226194 TGGCAAATTTTAACATGCTTCCT 57.774 34.783 0.00 0.00 38.79 3.36
2185 8527 7.608308 TTATGGCAAATTTTAACATGCTTCC 57.392 32.000 0.00 0.00 38.79 3.46
2186 8528 9.890352 TTTTTATGGCAAATTTTAACATGCTTC 57.110 25.926 0.00 0.00 38.79 3.86
2187 8529 9.676195 GTTTTTATGGCAAATTTTAACATGCTT 57.324 25.926 0.00 0.00 38.79 3.91
2188 8530 9.065798 AGTTTTTATGGCAAATTTTAACATGCT 57.934 25.926 0.00 0.00 38.79 3.79
2198 8540 9.474313 TCCTCACTATAGTTTTTATGGCAAATT 57.526 29.630 1.56 0.00 0.00 1.82
2199 8541 9.646522 ATCCTCACTATAGTTTTTATGGCAAAT 57.353 29.630 1.56 0.00 0.00 2.32
2209 8551 9.853177 CAAAGGGAATATCCTCACTATAGTTTT 57.147 33.333 1.56 0.00 36.57 2.43
2210 8552 9.004231 ACAAAGGGAATATCCTCACTATAGTTT 57.996 33.333 1.56 0.00 36.57 2.66
2211 8553 8.568617 ACAAAGGGAATATCCTCACTATAGTT 57.431 34.615 1.56 0.00 36.57 2.24
2212 8554 9.670442 TTACAAAGGGAATATCCTCACTATAGT 57.330 33.333 0.00 0.00 36.57 2.12
2219 8561 9.131791 GCTTTATTTACAAAGGGAATATCCTCA 57.868 33.333 0.00 0.00 36.57 3.86
2220 8562 8.290325 CGCTTTATTTACAAAGGGAATATCCTC 58.710 37.037 6.78 0.00 46.09 3.71
2221 8563 7.230712 CCGCTTTATTTACAAAGGGAATATCCT 59.769 37.037 12.55 0.00 46.09 3.24
2222 8564 7.368059 CCGCTTTATTTACAAAGGGAATATCC 58.632 38.462 12.55 0.00 46.09 2.59
2223 8565 7.368059 CCCGCTTTATTTACAAAGGGAATATC 58.632 38.462 12.55 0.00 46.09 1.63
2224 8566 6.239204 GCCCGCTTTATTTACAAAGGGAATAT 60.239 38.462 12.55 0.00 46.09 1.28
2225 8567 5.068067 GCCCGCTTTATTTACAAAGGGAATA 59.932 40.000 12.55 0.00 46.09 1.75
2226 8568 4.142026 GCCCGCTTTATTTACAAAGGGAAT 60.142 41.667 12.55 0.00 46.09 3.01
2227 8569 3.193903 GCCCGCTTTATTTACAAAGGGAA 59.806 43.478 12.55 0.00 46.09 3.97
2228 8570 2.756207 GCCCGCTTTATTTACAAAGGGA 59.244 45.455 12.55 0.00 46.09 4.20
2229 8571 2.494073 TGCCCGCTTTATTTACAAAGGG 59.506 45.455 5.86 5.86 44.05 3.95
2230 8572 3.859411 TGCCCGCTTTATTTACAAAGG 57.141 42.857 0.00 0.00 36.27 3.11
2231 8573 4.566360 CCAATGCCCGCTTTATTTACAAAG 59.434 41.667 0.00 0.00 38.34 2.77
2232 8574 4.021016 ACCAATGCCCGCTTTATTTACAAA 60.021 37.500 0.00 0.00 0.00 2.83
2233 8575 3.511934 ACCAATGCCCGCTTTATTTACAA 59.488 39.130 0.00 0.00 0.00 2.41
2234 8576 3.093057 ACCAATGCCCGCTTTATTTACA 58.907 40.909 0.00 0.00 0.00 2.41
2235 8577 3.793797 ACCAATGCCCGCTTTATTTAC 57.206 42.857 0.00 0.00 0.00 2.01
2236 8578 4.810191 AAACCAATGCCCGCTTTATTTA 57.190 36.364 0.00 0.00 0.00 1.40
2237 8579 3.694043 AAACCAATGCCCGCTTTATTT 57.306 38.095 0.00 0.00 0.00 1.40
2238 8580 3.694043 AAAACCAATGCCCGCTTTATT 57.306 38.095 0.00 0.00 0.00 1.40
2239 8581 3.694043 AAAAACCAATGCCCGCTTTAT 57.306 38.095 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.