Multiple sequence alignment - TraesCS7A01G128900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G128900 chr7A 100.000 2700 0 0 1 2700 83087066 83084367 0.000000e+00 4987.0
1 TraesCS7A01G128900 chr7A 93.767 369 12 6 1 367 23144164 23144523 6.570000e-151 544.0
2 TraesCS7A01G128900 chr7A 91.176 374 22 5 1 367 664889212 664889581 5.190000e-137 497.0
3 TraesCS7A01G128900 chr7D 90.168 895 51 10 793 1661 80193105 80192222 0.000000e+00 1131.0
4 TraesCS7A01G128900 chr7D 84.273 1100 95 35 370 1425 80265588 80264523 0.000000e+00 1002.0
5 TraesCS7A01G128900 chr7D 89.964 558 51 5 2147 2700 558090699 558090143 0.000000e+00 715.0
6 TraesCS7A01G128900 chr7D 89.706 476 38 6 1210 1683 80379171 80378705 4.980000e-167 597.0
7 TraesCS7A01G128900 chr7D 89.822 393 24 10 370 752 80295719 80295333 8.690000e-135 490.0
8 TraesCS7A01G128900 chr7D 89.674 368 24 7 388 752 80193469 80193113 8.810000e-125 457.0
9 TraesCS7A01G128900 chr7D 82.186 494 27 29 828 1261 80295285 80294793 4.250000e-98 368.0
10 TraesCS7A01G128900 chr7D 77.035 688 100 35 793 1443 80379685 80379019 2.570000e-90 342.0
11 TraesCS7A01G128900 chr7D 81.633 441 46 14 1221 1661 80264646 80264241 1.550000e-87 333.0
12 TraesCS7A01G128900 chr7D 84.946 279 20 9 1823 2098 80191982 80191723 2.060000e-66 263.0
13 TraesCS7A01G128900 chr7D 85.091 275 21 11 1826 2098 80263984 80263728 2.060000e-66 263.0
14 TraesCS7A01G128900 chr7D 87.037 216 13 9 1881 2096 80291718 80291518 2.090000e-56 230.0
15 TraesCS7A01G128900 chr7D 94.444 72 4 0 1613 1684 80264256 80264185 7.900000e-21 111.0
16 TraesCS7A01G128900 chr7D 91.304 69 6 0 1616 1684 80291993 80291925 7.960000e-16 95.3
17 TraesCS7A01G128900 chr2D 90.991 555 45 4 2148 2700 38059197 38059748 0.000000e+00 743.0
18 TraesCS7A01G128900 chr3A 89.982 559 47 7 2147 2700 19090928 19090374 0.000000e+00 713.0
19 TraesCS7A01G128900 chr3A 91.711 374 24 5 1 372 17161139 17161507 1.850000e-141 512.0
20 TraesCS7A01G128900 chr1B 89.643 560 48 9 2148 2700 642796394 642796950 0.000000e+00 704.0
21 TraesCS7A01G128900 chr6A 89.568 556 47 8 2148 2700 502365033 502364486 0.000000e+00 695.0
22 TraesCS7A01G128900 chr6A 91.489 376 20 7 1 367 316175452 316175824 8.630000e-140 507.0
23 TraesCS7A01G128900 chr2A 88.947 570 54 5 2135 2700 704010481 704011045 0.000000e+00 695.0
24 TraesCS7A01G128900 chr2B 88.869 566 51 9 2138 2700 607068555 607069111 0.000000e+00 686.0
25 TraesCS7A01G128900 chr5A 88.869 557 52 7 2148 2700 24413736 24413186 0.000000e+00 676.0
26 TraesCS7A01G128900 chr5A 92.162 370 23 3 1 367 673599565 673599199 3.980000e-143 518.0
27 TraesCS7A01G128900 chr5A 90.625 384 21 9 1 373 34734500 34734879 1.870000e-136 496.0
28 TraesCS7A01G128900 chr5D 88.309 556 58 6 2147 2700 381813147 381813697 0.000000e+00 660.0
29 TraesCS7A01G128900 chr5D 91.398 372 19 9 5 367 516112921 516112554 5.190000e-137 497.0
30 TraesCS7A01G128900 chr7B 82.967 728 65 28 558 1259 27483265 27482571 1.070000e-168 603.0
31 TraesCS7A01G128900 chr7B 93.955 397 19 3 1749 2145 27482168 27481777 1.790000e-166 595.0
32 TraesCS7A01G128900 chr4A 91.957 373 23 3 1 369 422031733 422032102 1.430000e-142 516.0
33 TraesCS7A01G128900 chr1D 91.553 367 22 6 6 367 441553545 441553183 5.190000e-137 497.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G128900 chr7A 83084367 83087066 2699 True 4987.000 4987 100.000000 1 2700 1 chr7A.!!$R1 2699
1 TraesCS7A01G128900 chr7D 558090143 558090699 556 True 715.000 715 89.964000 2147 2700 1 chr7D.!!$R1 553
2 TraesCS7A01G128900 chr7D 80191723 80193469 1746 True 617.000 1131 88.262667 388 2098 3 chr7D.!!$R2 1710
3 TraesCS7A01G128900 chr7D 80378705 80379685 980 True 469.500 597 83.370500 793 1683 2 chr7D.!!$R5 890
4 TraesCS7A01G128900 chr7D 80263728 80265588 1860 True 427.250 1002 86.360250 370 2098 4 chr7D.!!$R3 1728
5 TraesCS7A01G128900 chr7D 80291518 80295719 4201 True 295.825 490 87.587250 370 2096 4 chr7D.!!$R4 1726
6 TraesCS7A01G128900 chr2D 38059197 38059748 551 False 743.000 743 90.991000 2148 2700 1 chr2D.!!$F1 552
7 TraesCS7A01G128900 chr3A 19090374 19090928 554 True 713.000 713 89.982000 2147 2700 1 chr3A.!!$R1 553
8 TraesCS7A01G128900 chr1B 642796394 642796950 556 False 704.000 704 89.643000 2148 2700 1 chr1B.!!$F1 552
9 TraesCS7A01G128900 chr6A 502364486 502365033 547 True 695.000 695 89.568000 2148 2700 1 chr6A.!!$R1 552
10 TraesCS7A01G128900 chr2A 704010481 704011045 564 False 695.000 695 88.947000 2135 2700 1 chr2A.!!$F1 565
11 TraesCS7A01G128900 chr2B 607068555 607069111 556 False 686.000 686 88.869000 2138 2700 1 chr2B.!!$F1 562
12 TraesCS7A01G128900 chr5A 24413186 24413736 550 True 676.000 676 88.869000 2148 2700 1 chr5A.!!$R1 552
13 TraesCS7A01G128900 chr5D 381813147 381813697 550 False 660.000 660 88.309000 2147 2700 1 chr5D.!!$F1 553
14 TraesCS7A01G128900 chr7B 27481777 27483265 1488 True 599.000 603 88.461000 558 2145 2 chr7B.!!$R1 1587

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
720 732 0.036732 TGGCAACTGAGCAGGTAAGG 59.963 55.0 2.2 0.0 35.83 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2066 4897 0.671163 CTTGGCGCCATGTTTGCATT 60.671 50.0 33.25 0.0 31.99 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.635844 TATAGCGTTGACCAAGCACG 58.364 50.000 0.00 0.00 0.00 5.34
23 24 1.019278 ATAGCGTTGACCAAGCACGG 61.019 55.000 0.00 0.00 0.00 4.94
24 25 2.089887 TAGCGTTGACCAAGCACGGA 62.090 55.000 0.00 0.00 0.00 4.69
25 26 2.935955 CGTTGACCAAGCACGGAC 59.064 61.111 0.00 0.00 0.00 4.79
26 27 1.885388 CGTTGACCAAGCACGGACA 60.885 57.895 0.00 0.00 0.00 4.02
27 28 1.227999 CGTTGACCAAGCACGGACAT 61.228 55.000 0.00 0.00 30.77 3.06
28 29 1.803334 GTTGACCAAGCACGGACATA 58.197 50.000 0.00 0.00 30.77 2.29
29 30 2.147958 GTTGACCAAGCACGGACATAA 58.852 47.619 0.00 0.00 30.77 1.90
30 31 2.093306 TGACCAAGCACGGACATAAG 57.907 50.000 0.00 0.00 0.00 1.73
31 32 1.621317 TGACCAAGCACGGACATAAGA 59.379 47.619 0.00 0.00 0.00 2.10
32 33 2.271800 GACCAAGCACGGACATAAGAG 58.728 52.381 0.00 0.00 0.00 2.85
33 34 1.899814 ACCAAGCACGGACATAAGAGA 59.100 47.619 0.00 0.00 0.00 3.10
34 35 2.093973 ACCAAGCACGGACATAAGAGAG 60.094 50.000 0.00 0.00 0.00 3.20
35 36 2.544685 CAAGCACGGACATAAGAGAGG 58.455 52.381 0.00 0.00 0.00 3.69
36 37 2.145397 AGCACGGACATAAGAGAGGA 57.855 50.000 0.00 0.00 0.00 3.71
37 38 1.751924 AGCACGGACATAAGAGAGGAC 59.248 52.381 0.00 0.00 0.00 3.85
38 39 1.476891 GCACGGACATAAGAGAGGACA 59.523 52.381 0.00 0.00 0.00 4.02
39 40 2.735762 GCACGGACATAAGAGAGGACAC 60.736 54.545 0.00 0.00 0.00 3.67
40 41 2.755655 CACGGACATAAGAGAGGACACT 59.244 50.000 0.00 0.00 0.00 3.55
41 42 3.193691 CACGGACATAAGAGAGGACACTT 59.806 47.826 0.00 0.00 0.00 3.16
42 43 3.444388 ACGGACATAAGAGAGGACACTTC 59.556 47.826 0.00 0.00 0.00 3.01
43 44 3.697045 CGGACATAAGAGAGGACACTTCT 59.303 47.826 0.00 0.00 0.00 2.85
44 45 4.201970 CGGACATAAGAGAGGACACTTCTC 60.202 50.000 0.00 0.00 0.00 2.87
45 46 4.953579 GGACATAAGAGAGGACACTTCTCT 59.046 45.833 7.43 7.43 43.56 3.10
57 58 8.856103 AGAGGACACTTCTCTCTATTAATTAGC 58.144 37.037 0.00 0.00 36.99 3.09
58 59 8.776061 AGGACACTTCTCTCTATTAATTAGCT 57.224 34.615 0.00 0.00 0.00 3.32
59 60 9.869667 AGGACACTTCTCTCTATTAATTAGCTA 57.130 33.333 0.00 0.00 0.00 3.32
61 62 9.620660 GACACTTCTCTCTATTAATTAGCTAGC 57.379 37.037 6.62 6.62 0.00 3.42
62 63 9.362151 ACACTTCTCTCTATTAATTAGCTAGCT 57.638 33.333 23.12 23.12 0.00 3.32
101 102 8.959676 ATGAAACACCTAAATTAAACCCCTAA 57.040 30.769 0.00 0.00 0.00 2.69
102 103 8.180706 TGAAACACCTAAATTAAACCCCTAAC 57.819 34.615 0.00 0.00 0.00 2.34
103 104 7.783596 TGAAACACCTAAATTAAACCCCTAACA 59.216 33.333 0.00 0.00 0.00 2.41
104 105 7.528996 AACACCTAAATTAAACCCCTAACAC 57.471 36.000 0.00 0.00 0.00 3.32
105 106 6.012113 ACACCTAAATTAAACCCCTAACACC 58.988 40.000 0.00 0.00 0.00 4.16
106 107 5.419788 CACCTAAATTAAACCCCTAACACCC 59.580 44.000 0.00 0.00 0.00 4.61
107 108 4.957954 CCTAAATTAAACCCCTAACACCCC 59.042 45.833 0.00 0.00 0.00 4.95
108 109 3.478175 AATTAAACCCCTAACACCCCC 57.522 47.619 0.00 0.00 0.00 5.40
134 135 0.548989 AAAAACAAAACCCCAGCCCC 59.451 50.000 0.00 0.00 0.00 5.80
135 136 0.327095 AAAACAAAACCCCAGCCCCT 60.327 50.000 0.00 0.00 0.00 4.79
136 137 1.053835 AAACAAAACCCCAGCCCCTG 61.054 55.000 0.00 0.00 0.00 4.45
137 138 1.955458 AACAAAACCCCAGCCCCTGA 61.955 55.000 0.00 0.00 32.44 3.86
138 139 1.152355 CAAAACCCCAGCCCCTGAA 60.152 57.895 0.00 0.00 32.44 3.02
139 140 0.762461 CAAAACCCCAGCCCCTGAAA 60.762 55.000 0.00 0.00 32.44 2.69
140 141 0.193321 AAAACCCCAGCCCCTGAAAT 59.807 50.000 0.00 0.00 32.44 2.17
141 142 0.545071 AAACCCCAGCCCCTGAAATG 60.545 55.000 0.00 0.00 32.44 2.32
142 143 2.761213 CCCCAGCCCCTGAAATGC 60.761 66.667 0.00 0.00 32.44 3.56
143 144 2.361771 CCCAGCCCCTGAAATGCT 59.638 61.111 0.00 0.00 32.44 3.79
146 147 4.751431 AGCCCCTGAAATGCTGAC 57.249 55.556 0.00 0.00 33.23 3.51
147 148 1.377725 AGCCCCTGAAATGCTGACG 60.378 57.895 0.00 0.00 33.23 4.35
148 149 3.056313 GCCCCTGAAATGCTGACGC 62.056 63.158 0.00 0.00 0.00 5.19
149 150 2.753966 CCCCTGAAATGCTGACGCG 61.754 63.158 3.53 3.53 39.65 6.01
150 151 2.034879 CCCTGAAATGCTGACGCGT 61.035 57.895 13.85 13.85 39.65 6.01
151 152 1.133253 CCTGAAATGCTGACGCGTG 59.867 57.895 20.70 3.71 39.65 5.34
152 153 1.133253 CTGAAATGCTGACGCGTGG 59.867 57.895 20.70 10.85 39.65 4.94
153 154 1.291184 CTGAAATGCTGACGCGTGGA 61.291 55.000 20.70 4.37 39.65 4.02
154 155 0.673333 TGAAATGCTGACGCGTGGAT 60.673 50.000 20.70 7.22 39.65 3.41
155 156 0.247814 GAAATGCTGACGCGTGGATG 60.248 55.000 20.70 4.59 39.65 3.51
156 157 0.955428 AAATGCTGACGCGTGGATGT 60.955 50.000 20.70 1.22 39.65 3.06
157 158 1.361668 AATGCTGACGCGTGGATGTC 61.362 55.000 20.70 0.06 39.65 3.06
158 159 2.125912 GCTGACGCGTGGATGTCT 60.126 61.111 20.70 0.00 36.10 3.41
159 160 1.138883 GCTGACGCGTGGATGTCTA 59.861 57.895 20.70 0.00 36.10 2.59
160 161 0.249073 GCTGACGCGTGGATGTCTAT 60.249 55.000 20.70 0.00 36.10 1.98
161 162 1.802880 GCTGACGCGTGGATGTCTATT 60.803 52.381 20.70 0.00 36.10 1.73
162 163 1.854743 CTGACGCGTGGATGTCTATTG 59.145 52.381 20.70 0.00 36.10 1.90
163 164 1.209128 GACGCGTGGATGTCTATTGG 58.791 55.000 20.70 0.00 32.37 3.16
164 165 0.535335 ACGCGTGGATGTCTATTGGT 59.465 50.000 12.93 0.00 0.00 3.67
165 166 1.209128 CGCGTGGATGTCTATTGGTC 58.791 55.000 0.00 0.00 0.00 4.02
166 167 1.583054 GCGTGGATGTCTATTGGTCC 58.417 55.000 0.00 0.00 0.00 4.46
167 168 1.810412 GCGTGGATGTCTATTGGTCCC 60.810 57.143 0.00 0.00 0.00 4.46
168 169 1.538204 CGTGGATGTCTATTGGTCCCG 60.538 57.143 0.00 0.00 0.00 5.14
169 170 0.468226 TGGATGTCTATTGGTCCCGC 59.532 55.000 0.00 0.00 0.00 6.13
170 171 0.759346 GGATGTCTATTGGTCCCGCT 59.241 55.000 0.00 0.00 0.00 5.52
171 172 1.141053 GGATGTCTATTGGTCCCGCTT 59.859 52.381 0.00 0.00 0.00 4.68
172 173 2.213499 GATGTCTATTGGTCCCGCTTG 58.787 52.381 0.00 0.00 0.00 4.01
173 174 0.251916 TGTCTATTGGTCCCGCTTGG 59.748 55.000 0.00 0.00 0.00 3.61
174 175 0.252197 GTCTATTGGTCCCGCTTGGT 59.748 55.000 0.00 0.00 34.77 3.67
175 176 0.251916 TCTATTGGTCCCGCTTGGTG 59.748 55.000 0.00 0.00 34.77 4.17
176 177 1.376609 CTATTGGTCCCGCTTGGTGC 61.377 60.000 0.00 0.00 38.57 5.01
177 178 2.830186 TATTGGTCCCGCTTGGTGCC 62.830 60.000 0.00 0.00 38.78 5.01
192 193 4.589675 GCCACCAACCGGGACCAA 62.590 66.667 6.32 0.00 41.15 3.67
193 194 2.196229 CCACCAACCGGGACCAAA 59.804 61.111 6.32 0.00 41.15 3.28
194 195 1.901464 CCACCAACCGGGACCAAAG 60.901 63.158 6.32 0.00 41.15 2.77
195 196 1.901464 CACCAACCGGGACCAAAGG 60.901 63.158 6.32 0.00 41.15 3.11
196 197 2.989253 CCAACCGGGACCAAAGGC 60.989 66.667 6.32 0.00 40.01 4.35
197 198 2.989253 CAACCGGGACCAAAGGCC 60.989 66.667 6.32 0.00 0.00 5.19
198 199 4.295199 AACCGGGACCAAAGGCCC 62.295 66.667 6.32 0.00 36.26 5.80
200 201 4.426313 CCGGGACCAAAGGCCCTC 62.426 72.222 0.00 0.00 37.05 4.30
201 202 4.426313 CGGGACCAAAGGCCCTCC 62.426 72.222 0.00 0.00 37.05 4.30
203 204 2.356667 GGACCAAAGGCCCTCCTG 59.643 66.667 0.00 0.00 43.40 3.86
204 205 2.361737 GACCAAAGGCCCTCCTGC 60.362 66.667 0.00 0.00 43.40 4.85
212 213 4.432741 GCCCTCCTGCCTGGGTTC 62.433 72.222 0.00 0.00 45.06 3.62
213 214 4.101448 CCCTCCTGCCTGGGTTCG 62.101 72.222 0.00 0.00 38.65 3.95
214 215 4.101448 CCTCCTGCCTGGGTTCGG 62.101 72.222 0.00 0.00 36.20 4.30
232 233 3.345808 CACACCGGCCACGTGAAG 61.346 66.667 23.24 12.84 38.78 3.02
233 234 4.619227 ACACCGGCCACGTGAAGG 62.619 66.667 23.24 18.51 38.78 3.46
239 240 3.134127 GCCACGTGAAGGCCCATC 61.134 66.667 19.30 0.00 46.50 3.51
240 241 2.671070 CCACGTGAAGGCCCATCT 59.329 61.111 19.30 0.00 0.00 2.90
241 242 1.746615 CCACGTGAAGGCCCATCTG 60.747 63.158 19.30 0.00 0.00 2.90
242 243 1.003355 CACGTGAAGGCCCATCTGT 60.003 57.895 10.90 0.00 0.00 3.41
243 244 1.021390 CACGTGAAGGCCCATCTGTC 61.021 60.000 10.90 0.00 0.00 3.51
244 245 1.450312 CGTGAAGGCCCATCTGTCC 60.450 63.158 0.00 0.00 0.00 4.02
245 246 1.077429 GTGAAGGCCCATCTGTCCC 60.077 63.158 0.00 0.00 0.00 4.46
246 247 2.190578 GAAGGCCCATCTGTCCCG 59.809 66.667 0.00 0.00 0.00 5.14
247 248 2.285368 AAGGCCCATCTGTCCCGA 60.285 61.111 0.00 0.00 0.00 5.14
248 249 1.694169 AAGGCCCATCTGTCCCGAT 60.694 57.895 0.00 0.00 0.00 4.18
249 250 1.281925 AAGGCCCATCTGTCCCGATT 61.282 55.000 0.00 0.00 0.00 3.34
250 251 1.227973 GGCCCATCTGTCCCGATTC 60.228 63.158 0.00 0.00 0.00 2.52
251 252 1.595382 GCCCATCTGTCCCGATTCG 60.595 63.158 0.00 0.00 0.00 3.34
252 253 1.823295 CCCATCTGTCCCGATTCGT 59.177 57.895 5.20 0.00 0.00 3.85
253 254 0.530650 CCCATCTGTCCCGATTCGTG 60.531 60.000 5.20 0.00 0.00 4.35
254 255 0.175760 CCATCTGTCCCGATTCGTGT 59.824 55.000 5.20 0.00 0.00 4.49
255 256 1.407618 CCATCTGTCCCGATTCGTGTA 59.592 52.381 5.20 0.00 0.00 2.90
256 257 2.159156 CCATCTGTCCCGATTCGTGTAA 60.159 50.000 5.20 0.00 0.00 2.41
257 258 2.933495 TCTGTCCCGATTCGTGTAAG 57.067 50.000 5.20 0.00 0.00 2.34
258 259 2.439409 TCTGTCCCGATTCGTGTAAGA 58.561 47.619 5.20 0.57 0.00 2.10
259 260 2.821378 TCTGTCCCGATTCGTGTAAGAA 59.179 45.455 5.20 0.00 34.31 2.52
260 261 2.921754 CTGTCCCGATTCGTGTAAGAAC 59.078 50.000 5.20 0.00 32.39 3.01
261 262 2.265683 GTCCCGATTCGTGTAAGAACC 58.734 52.381 5.20 0.00 32.39 3.62
262 263 1.135315 TCCCGATTCGTGTAAGAACCG 60.135 52.381 5.20 0.00 36.92 4.44
264 265 1.274596 CGATTCGTGTAAGAACCGGG 58.725 55.000 6.32 0.00 33.72 5.73
265 266 1.135315 CGATTCGTGTAAGAACCGGGA 60.135 52.381 6.32 0.00 33.72 5.14
266 267 2.265683 GATTCGTGTAAGAACCGGGAC 58.734 52.381 6.32 0.00 32.39 4.46
267 268 1.331214 TTCGTGTAAGAACCGGGACT 58.669 50.000 6.32 0.73 0.00 3.85
268 269 2.198827 TCGTGTAAGAACCGGGACTA 57.801 50.000 6.32 0.00 0.00 2.59
269 270 2.513753 TCGTGTAAGAACCGGGACTAA 58.486 47.619 6.32 0.00 0.00 2.24
270 271 2.890311 TCGTGTAAGAACCGGGACTAAA 59.110 45.455 6.32 0.00 0.00 1.85
271 272 3.057315 TCGTGTAAGAACCGGGACTAAAG 60.057 47.826 6.32 0.00 0.00 1.85
272 273 3.593096 GTGTAAGAACCGGGACTAAAGG 58.407 50.000 6.32 0.00 0.00 3.11
273 274 2.568509 TGTAAGAACCGGGACTAAAGGG 59.431 50.000 6.32 0.00 0.00 3.95
274 275 1.738474 AAGAACCGGGACTAAAGGGT 58.262 50.000 6.32 0.00 0.00 4.34
275 276 1.738474 AGAACCGGGACTAAAGGGTT 58.262 50.000 6.32 0.00 45.02 4.11
276 277 2.906568 AGAACCGGGACTAAAGGGTTA 58.093 47.619 6.32 0.00 42.54 2.85
277 278 2.836372 AGAACCGGGACTAAAGGGTTAG 59.164 50.000 6.32 0.00 42.54 2.34
278 279 1.576577 ACCGGGACTAAAGGGTTAGG 58.423 55.000 6.32 0.00 41.03 2.69
279 280 1.079323 ACCGGGACTAAAGGGTTAGGA 59.921 52.381 6.32 0.00 41.03 2.94
280 281 1.483827 CCGGGACTAAAGGGTTAGGAC 59.516 57.143 0.00 0.00 41.03 3.85
281 282 2.181975 CGGGACTAAAGGGTTAGGACA 58.818 52.381 0.00 0.00 41.03 4.02
282 283 2.770232 CGGGACTAAAGGGTTAGGACAT 59.230 50.000 0.00 0.00 41.03 3.06
283 284 3.199289 CGGGACTAAAGGGTTAGGACATT 59.801 47.826 0.00 0.00 41.03 2.71
284 285 4.406649 CGGGACTAAAGGGTTAGGACATTA 59.593 45.833 0.00 0.00 41.03 1.90
285 286 5.452917 CGGGACTAAAGGGTTAGGACATTAG 60.453 48.000 0.00 0.00 41.03 1.73
286 287 5.427806 GGGACTAAAGGGTTAGGACATTAGT 59.572 44.000 0.00 0.00 41.03 2.24
287 288 6.612863 GGGACTAAAGGGTTAGGACATTAGTA 59.387 42.308 0.00 0.00 41.03 1.82
288 289 7.126268 GGGACTAAAGGGTTAGGACATTAGTAA 59.874 40.741 0.00 0.00 41.03 2.24
289 290 7.984050 GGACTAAAGGGTTAGGACATTAGTAAC 59.016 40.741 0.00 0.00 41.03 2.50
290 291 7.550712 ACTAAAGGGTTAGGACATTAGTAACG 58.449 38.462 0.00 0.00 41.03 3.18
291 292 6.610075 AAAGGGTTAGGACATTAGTAACGA 57.390 37.500 0.00 0.00 0.00 3.85
292 293 5.588958 AGGGTTAGGACATTAGTAACGAC 57.411 43.478 0.00 0.00 0.00 4.34
293 294 4.403752 AGGGTTAGGACATTAGTAACGACC 59.596 45.833 0.00 0.00 0.00 4.79
294 295 4.403752 GGGTTAGGACATTAGTAACGACCT 59.596 45.833 5.38 5.38 0.00 3.85
295 296 5.105187 GGGTTAGGACATTAGTAACGACCTT 60.105 44.000 5.35 0.00 0.00 3.50
296 297 6.401394 GGTTAGGACATTAGTAACGACCTTT 58.599 40.000 5.35 0.00 0.00 3.11
297 298 6.875726 GGTTAGGACATTAGTAACGACCTTTT 59.124 38.462 5.35 0.00 0.00 2.27
298 299 8.034804 GGTTAGGACATTAGTAACGACCTTTTA 58.965 37.037 5.35 0.00 0.00 1.52
299 300 9.080915 GTTAGGACATTAGTAACGACCTTTTAG 57.919 37.037 5.35 0.00 0.00 1.85
300 301 7.237209 AGGACATTAGTAACGACCTTTTAGT 57.763 36.000 0.00 0.00 0.00 2.24
301 302 7.318893 AGGACATTAGTAACGACCTTTTAGTC 58.681 38.462 0.00 0.00 0.00 2.59
302 303 6.533012 GGACATTAGTAACGACCTTTTAGTCC 59.467 42.308 0.00 0.00 32.91 3.85
303 304 6.401394 ACATTAGTAACGACCTTTTAGTCCC 58.599 40.000 0.00 0.00 32.91 4.46
304 305 3.582714 AGTAACGACCTTTTAGTCCCG 57.417 47.619 0.00 0.00 32.91 5.14
305 306 2.232208 AGTAACGACCTTTTAGTCCCGG 59.768 50.000 0.00 0.00 32.91 5.73
306 307 1.051008 AACGACCTTTTAGTCCCGGT 58.949 50.000 0.00 0.00 32.91 5.28
307 308 1.051008 ACGACCTTTTAGTCCCGGTT 58.949 50.000 0.00 0.00 32.91 4.44
308 309 1.001293 ACGACCTTTTAGTCCCGGTTC 59.999 52.381 0.00 0.00 32.91 3.62
309 310 1.001181 CGACCTTTTAGTCCCGGTTCA 59.999 52.381 0.00 0.00 32.91 3.18
310 311 2.420642 GACCTTTTAGTCCCGGTTCAC 58.579 52.381 0.00 0.00 0.00 3.18
311 312 1.770061 ACCTTTTAGTCCCGGTTCACA 59.230 47.619 0.00 0.00 0.00 3.58
312 313 2.173143 ACCTTTTAGTCCCGGTTCACAA 59.827 45.455 0.00 0.00 0.00 3.33
313 314 3.215975 CCTTTTAGTCCCGGTTCACAAA 58.784 45.455 0.00 0.00 0.00 2.83
314 315 3.004002 CCTTTTAGTCCCGGTTCACAAAC 59.996 47.826 0.00 0.00 34.46 2.93
321 322 4.563404 GGTTCACAAACCGGGACA 57.437 55.556 6.32 0.00 45.33 4.02
322 323 2.796500 GGTTCACAAACCGGGACAA 58.204 52.632 6.32 0.00 45.33 3.18
323 324 1.104630 GGTTCACAAACCGGGACAAA 58.895 50.000 6.32 0.00 45.33 2.83
324 325 1.477295 GGTTCACAAACCGGGACAAAA 59.523 47.619 6.32 0.00 45.33 2.44
325 326 2.480587 GGTTCACAAACCGGGACAAAAG 60.481 50.000 6.32 0.00 45.33 2.27
326 327 2.421751 TCACAAACCGGGACAAAAGA 57.578 45.000 6.32 0.00 0.00 2.52
327 328 2.018515 TCACAAACCGGGACAAAAGAC 58.981 47.619 6.32 0.00 0.00 3.01
328 329 1.066454 CACAAACCGGGACAAAAGACC 59.934 52.381 6.32 0.00 0.00 3.85
329 330 0.671796 CAAACCGGGACAAAAGACCC 59.328 55.000 6.32 0.00 42.43 4.46
330 331 0.554305 AAACCGGGACAAAAGACCCT 59.446 50.000 6.32 0.00 43.57 4.34
331 332 0.554305 AACCGGGACAAAAGACCCTT 59.446 50.000 6.32 0.00 43.57 3.95
332 333 1.437397 ACCGGGACAAAAGACCCTTA 58.563 50.000 6.32 0.00 43.57 2.69
333 334 1.072806 ACCGGGACAAAAGACCCTTAC 59.927 52.381 6.32 0.00 43.57 2.34
334 335 1.612462 CCGGGACAAAAGACCCTTACC 60.612 57.143 0.00 0.00 43.57 2.85
335 336 1.072648 CGGGACAAAAGACCCTTACCA 59.927 52.381 0.00 0.00 43.57 3.25
336 337 2.487625 CGGGACAAAAGACCCTTACCAA 60.488 50.000 0.00 0.00 43.57 3.67
337 338 2.889045 GGGACAAAAGACCCTTACCAAC 59.111 50.000 0.00 0.00 42.56 3.77
338 339 2.889045 GGACAAAAGACCCTTACCAACC 59.111 50.000 0.00 0.00 0.00 3.77
339 340 2.551032 GACAAAAGACCCTTACCAACCG 59.449 50.000 0.00 0.00 0.00 4.44
340 341 1.883926 CAAAAGACCCTTACCAACCGG 59.116 52.381 0.00 0.00 38.77 5.28
341 342 0.402887 AAAGACCCTTACCAACCGGG 59.597 55.000 6.32 0.00 43.79 5.73
342 343 0.474273 AAGACCCTTACCAACCGGGA 60.474 55.000 6.32 0.00 40.55 5.14
343 344 1.196766 AGACCCTTACCAACCGGGAC 61.197 60.000 6.32 0.00 40.55 4.46
430 432 2.652590 GAAGGAAGCTGCTTGATGGAT 58.347 47.619 21.25 0.00 0.00 3.41
447 449 1.153168 ATTGGGTCTGAATCGGCCG 60.153 57.895 22.12 22.12 0.00 6.13
481 483 0.250166 GGGTACGTTGGAGCTTGTGT 60.250 55.000 0.00 0.00 0.00 3.72
502 504 2.611225 ACTATACTCAGCTGCTTGCC 57.389 50.000 9.47 0.00 44.23 4.52
647 655 2.072298 GCAGCCAAGTGTTCTCTAGTG 58.928 52.381 0.00 0.00 0.00 2.74
665 675 6.830912 TCTAGTGGAGTAATCCAAATCCATG 58.169 40.000 14.60 0.90 43.42 3.66
710 722 1.629861 TGATCCATCACTGGCAACTGA 59.370 47.619 0.00 0.00 42.80 3.41
720 732 0.036732 TGGCAACTGAGCAGGTAAGG 59.963 55.000 2.20 0.00 35.83 2.69
758 770 3.069729 TGATCTAGTCCTGATCTCGTCGA 59.930 47.826 0.00 0.00 40.51 4.20
759 771 3.755112 TCTAGTCCTGATCTCGTCGAT 57.245 47.619 0.00 0.00 34.25 3.59
790 802 5.292765 CCATAGGCTAATAGATATGTGCCG 58.707 45.833 0.00 0.00 44.42 5.69
791 803 5.163405 CCATAGGCTAATAGATATGTGCCGT 60.163 44.000 0.00 0.00 44.42 5.68
799 812 3.066291 AGATATGTGCCGTCCAAAACA 57.934 42.857 0.00 0.00 0.00 2.83
811 824 6.319911 TGCCGTCCAAAACAATATGATATGAA 59.680 34.615 0.00 0.00 0.00 2.57
826 844 2.839486 ATGAAGAACGAACTGGCTCA 57.161 45.000 0.00 0.00 0.00 4.26
877 901 2.606308 CGGTCGACCCTATAAATCCGTG 60.606 54.545 28.52 5.95 33.39 4.94
950 990 6.631016 TCACTTTGCAGAAATACTATCGTCT 58.369 36.000 0.00 0.00 0.00 4.18
1017 1085 0.755079 CGATGCCAGGAGGAGATGAA 59.245 55.000 0.00 0.00 36.89 2.57
1120 1215 1.774300 GGAGGGAATGGTGTTGGGT 59.226 57.895 0.00 0.00 0.00 4.51
1163 1261 1.035932 GCAGGCGTAGGAGGACAGTA 61.036 60.000 0.00 0.00 0.00 2.74
1313 1711 2.995574 CGGAGGACAGTTCCCGGT 60.996 66.667 0.00 0.00 44.10 5.28
1333 1731 4.083862 GAGGGAGCGGTGGTGGAC 62.084 72.222 0.00 0.00 0.00 4.02
1427 4070 2.284921 TGGAGTCCAGGGAGCTGG 60.285 66.667 8.12 0.00 45.53 4.85
1448 4091 1.376037 CCGTGGGAGAGTTTGGAGC 60.376 63.158 0.00 0.00 0.00 4.70
1497 4161 0.036952 CCGATGATATTCTGCCCGCT 60.037 55.000 0.00 0.00 0.00 5.52
1498 4162 1.073964 CGATGATATTCTGCCCGCTG 58.926 55.000 0.00 0.00 0.00 5.18
1647 4318 0.819259 TTTTTCTGCAGCTCAGGCGT 60.819 50.000 9.47 0.00 43.06 5.68
1684 4422 5.176223 CACAAACAAGGTTTGCTCATCATTC 59.824 40.000 18.74 0.00 32.93 2.67
1685 4423 4.525912 AACAAGGTTTGCTCATCATTCC 57.474 40.909 0.00 0.00 0.00 3.01
1686 4424 2.827921 ACAAGGTTTGCTCATCATTCCC 59.172 45.455 0.00 0.00 0.00 3.97
1687 4425 3.094572 CAAGGTTTGCTCATCATTCCCT 58.905 45.455 0.00 0.00 0.00 4.20
1688 4426 4.263905 ACAAGGTTTGCTCATCATTCCCTA 60.264 41.667 0.00 0.00 0.00 3.53
1720 4504 1.344114 GGATCAGCATCCCTCTCTGTC 59.656 57.143 0.00 0.00 42.91 3.51
1762 4559 5.812642 ACACTTAGCTTTATCTGTCCAATCG 59.187 40.000 0.00 0.00 0.00 3.34
1798 4597 4.870426 AGCGTGAATTATGACAAGACGAAT 59.130 37.500 0.00 0.00 0.00 3.34
1848 4674 3.710722 CAACCCTCCTCCGCAGCT 61.711 66.667 0.00 0.00 0.00 4.24
1925 4754 7.476540 TTCAGAATGCTCTACTGTAGGTTAA 57.523 36.000 14.47 0.00 34.76 2.01
1946 4775 8.501580 GGTTAATTTTCTAGACGTTTAGCTTGT 58.498 33.333 8.22 0.00 0.00 3.16
1984 4815 0.036105 TCCTGTCATGCTGCGTGAAT 60.036 50.000 24.81 0.00 30.77 2.57
1986 4817 2.009051 CCTGTCATGCTGCGTGAATTA 58.991 47.619 24.81 13.69 30.77 1.40
2029 4860 0.326595 TGAACCGGGAGCTAAATGCA 59.673 50.000 6.32 0.00 45.94 3.96
2064 4895 4.184629 CGATAAGGACCAAGACAGGAAAG 58.815 47.826 0.00 0.00 0.00 2.62
2065 4896 2.278332 AAGGACCAAGACAGGAAAGC 57.722 50.000 0.00 0.00 0.00 3.51
2066 4897 1.140312 AGGACCAAGACAGGAAAGCA 58.860 50.000 0.00 0.00 0.00 3.91
2067 4898 1.494721 AGGACCAAGACAGGAAAGCAA 59.505 47.619 0.00 0.00 0.00 3.91
2068 4899 2.108952 AGGACCAAGACAGGAAAGCAAT 59.891 45.455 0.00 0.00 0.00 3.56
2102 4933 5.502544 GCGCCAAGAGACTAAACAATGTATC 60.503 44.000 0.00 0.00 0.00 2.24
2104 4935 6.313905 CGCCAAGAGACTAAACAATGTATCTT 59.686 38.462 0.00 0.00 42.95 2.40
2131 4962 7.065683 TGTGTATCTGTTTGATGCGACATTATT 59.934 33.333 0.00 0.00 40.08 1.40
2293 5126 3.988819 TGCAATAAGGGTTTGTTTCAGC 58.011 40.909 0.00 0.00 0.00 4.26
2331 5164 6.203723 CACAGGACTAGTTTCAGAAAGAAAGG 59.796 42.308 0.00 0.00 46.34 3.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.377439 CGTGCTTGGTCAACGCTATATA 58.623 45.455 0.00 0.00 0.00 0.86
6 7 2.972505 CCGTGCTTGGTCAACGCT 60.973 61.111 0.00 0.00 0.00 5.07
7 8 2.970324 TCCGTGCTTGGTCAACGC 60.970 61.111 0.00 0.00 0.00 4.84
9 10 1.803334 TATGTCCGTGCTTGGTCAAC 58.197 50.000 0.00 0.00 30.94 3.18
10 11 2.037902 TCTTATGTCCGTGCTTGGTCAA 59.962 45.455 0.00 0.00 30.94 3.18
12 13 2.094182 TCTCTTATGTCCGTGCTTGGTC 60.094 50.000 0.00 0.00 0.00 4.02
13 14 1.899814 TCTCTTATGTCCGTGCTTGGT 59.100 47.619 0.00 0.00 0.00 3.67
14 15 2.544685 CTCTCTTATGTCCGTGCTTGG 58.455 52.381 0.00 0.00 0.00 3.61
15 16 2.166459 TCCTCTCTTATGTCCGTGCTTG 59.834 50.000 0.00 0.00 0.00 4.01
16 17 2.166664 GTCCTCTCTTATGTCCGTGCTT 59.833 50.000 0.00 0.00 0.00 3.91
17 18 1.751924 GTCCTCTCTTATGTCCGTGCT 59.248 52.381 0.00 0.00 0.00 4.40
18 19 1.476891 TGTCCTCTCTTATGTCCGTGC 59.523 52.381 0.00 0.00 0.00 5.34
19 20 2.755655 AGTGTCCTCTCTTATGTCCGTG 59.244 50.000 0.00 0.00 0.00 4.94
20 21 3.088789 AGTGTCCTCTCTTATGTCCGT 57.911 47.619 0.00 0.00 0.00 4.69
21 22 3.697045 AGAAGTGTCCTCTCTTATGTCCG 59.303 47.826 0.00 0.00 0.00 4.79
22 23 4.953579 AGAGAAGTGTCCTCTCTTATGTCC 59.046 45.833 0.00 0.00 37.55 4.02
31 32 8.856103 GCTAATTAATAGAGAGAAGTGTCCTCT 58.144 37.037 0.00 0.00 43.16 3.69
32 33 8.856103 AGCTAATTAATAGAGAGAAGTGTCCTC 58.144 37.037 0.00 0.00 33.04 3.71
33 34 8.776061 AGCTAATTAATAGAGAGAAGTGTCCT 57.224 34.615 0.00 0.00 33.04 3.85
35 36 9.620660 GCTAGCTAATTAATAGAGAGAAGTGTC 57.379 37.037 7.70 0.00 33.04 3.67
36 37 9.362151 AGCTAGCTAATTAATAGAGAGAAGTGT 57.638 33.333 17.69 0.00 33.04 3.55
76 77 8.809066 GTTAGGGGTTTAATTTAGGTGTTTCAT 58.191 33.333 0.00 0.00 0.00 2.57
77 78 7.783596 TGTTAGGGGTTTAATTTAGGTGTTTCA 59.216 33.333 0.00 0.00 0.00 2.69
78 79 8.084073 GTGTTAGGGGTTTAATTTAGGTGTTTC 58.916 37.037 0.00 0.00 0.00 2.78
79 80 7.015487 GGTGTTAGGGGTTTAATTTAGGTGTTT 59.985 37.037 0.00 0.00 0.00 2.83
80 81 6.494491 GGTGTTAGGGGTTTAATTTAGGTGTT 59.506 38.462 0.00 0.00 0.00 3.32
81 82 6.012113 GGTGTTAGGGGTTTAATTTAGGTGT 58.988 40.000 0.00 0.00 0.00 4.16
82 83 5.419788 GGGTGTTAGGGGTTTAATTTAGGTG 59.580 44.000 0.00 0.00 0.00 4.00
83 84 5.518904 GGGGTGTTAGGGGTTTAATTTAGGT 60.519 44.000 0.00 0.00 0.00 3.08
84 85 4.957954 GGGGTGTTAGGGGTTTAATTTAGG 59.042 45.833 0.00 0.00 0.00 2.69
85 86 4.957954 GGGGGTGTTAGGGGTTTAATTTAG 59.042 45.833 0.00 0.00 0.00 1.85
86 87 4.945411 GGGGGTGTTAGGGGTTTAATTTA 58.055 43.478 0.00 0.00 0.00 1.40
87 88 3.793712 GGGGGTGTTAGGGGTTTAATTT 58.206 45.455 0.00 0.00 0.00 1.82
88 89 3.478175 GGGGGTGTTAGGGGTTTAATT 57.522 47.619 0.00 0.00 0.00 1.40
115 116 0.548989 GGGGCTGGGGTTTTGTTTTT 59.451 50.000 0.00 0.00 0.00 1.94
116 117 0.327095 AGGGGCTGGGGTTTTGTTTT 60.327 50.000 0.00 0.00 0.00 2.43
117 118 1.053835 CAGGGGCTGGGGTTTTGTTT 61.054 55.000 0.00 0.00 0.00 2.83
118 119 1.459348 CAGGGGCTGGGGTTTTGTT 60.459 57.895 0.00 0.00 0.00 2.83
119 120 1.955458 TTCAGGGGCTGGGGTTTTGT 61.955 55.000 0.00 0.00 31.51 2.83
120 121 0.762461 TTTCAGGGGCTGGGGTTTTG 60.762 55.000 0.00 0.00 31.51 2.44
121 122 0.193321 ATTTCAGGGGCTGGGGTTTT 59.807 50.000 0.00 0.00 31.51 2.43
122 123 0.545071 CATTTCAGGGGCTGGGGTTT 60.545 55.000 0.00 0.00 31.51 3.27
123 124 1.079073 CATTTCAGGGGCTGGGGTT 59.921 57.895 0.00 0.00 31.51 4.11
124 125 2.772924 CATTTCAGGGGCTGGGGT 59.227 61.111 0.00 0.00 31.51 4.95
125 126 2.761213 GCATTTCAGGGGCTGGGG 60.761 66.667 0.00 0.00 31.51 4.96
126 127 2.361771 AGCATTTCAGGGGCTGGG 59.638 61.111 0.00 0.00 36.34 4.45
129 130 1.377725 CGTCAGCATTTCAGGGGCT 60.378 57.895 0.00 0.00 38.70 5.19
130 131 3.056313 GCGTCAGCATTTCAGGGGC 62.056 63.158 0.00 0.00 44.35 5.80
131 132 2.753966 CGCGTCAGCATTTCAGGGG 61.754 63.158 0.00 0.00 45.49 4.79
132 133 2.034879 ACGCGTCAGCATTTCAGGG 61.035 57.895 5.58 0.00 45.49 4.45
133 134 1.133253 CACGCGTCAGCATTTCAGG 59.867 57.895 9.86 0.00 45.49 3.86
134 135 1.133253 CCACGCGTCAGCATTTCAG 59.867 57.895 9.86 0.00 45.49 3.02
135 136 0.673333 ATCCACGCGTCAGCATTTCA 60.673 50.000 9.86 0.00 45.49 2.69
136 137 0.247814 CATCCACGCGTCAGCATTTC 60.248 55.000 9.86 0.00 45.49 2.17
137 138 0.955428 ACATCCACGCGTCAGCATTT 60.955 50.000 9.86 0.00 45.49 2.32
138 139 1.361668 GACATCCACGCGTCAGCATT 61.362 55.000 9.86 0.00 45.49 3.56
139 140 1.811266 GACATCCACGCGTCAGCAT 60.811 57.895 9.86 0.00 45.49 3.79
140 141 1.591504 TAGACATCCACGCGTCAGCA 61.592 55.000 9.86 0.00 45.49 4.41
141 142 0.249073 ATAGACATCCACGCGTCAGC 60.249 55.000 9.86 0.00 40.74 4.26
142 143 1.854743 CAATAGACATCCACGCGTCAG 59.145 52.381 9.86 3.57 34.48 3.51
143 144 1.470805 CCAATAGACATCCACGCGTCA 60.471 52.381 9.86 0.00 34.48 4.35
144 145 1.209128 CCAATAGACATCCACGCGTC 58.791 55.000 9.86 0.00 0.00 5.19
145 146 0.535335 ACCAATAGACATCCACGCGT 59.465 50.000 5.58 5.58 0.00 6.01
146 147 1.209128 GACCAATAGACATCCACGCG 58.791 55.000 3.53 3.53 0.00 6.01
147 148 1.583054 GGACCAATAGACATCCACGC 58.417 55.000 0.00 0.00 0.00 5.34
148 149 1.538204 CGGGACCAATAGACATCCACG 60.538 57.143 0.00 0.00 32.45 4.94
149 150 1.810412 GCGGGACCAATAGACATCCAC 60.810 57.143 0.00 0.00 32.45 4.02
150 151 0.468226 GCGGGACCAATAGACATCCA 59.532 55.000 0.00 0.00 32.45 3.41
151 152 0.759346 AGCGGGACCAATAGACATCC 59.241 55.000 0.00 0.00 0.00 3.51
152 153 2.213499 CAAGCGGGACCAATAGACATC 58.787 52.381 0.00 0.00 0.00 3.06
153 154 1.134098 CCAAGCGGGACCAATAGACAT 60.134 52.381 0.00 0.00 40.01 3.06
154 155 0.251916 CCAAGCGGGACCAATAGACA 59.748 55.000 0.00 0.00 40.01 3.41
155 156 0.252197 ACCAAGCGGGACCAATAGAC 59.748 55.000 4.35 0.00 41.15 2.59
156 157 0.251916 CACCAAGCGGGACCAATAGA 59.748 55.000 4.35 0.00 41.15 1.98
157 158 1.376609 GCACCAAGCGGGACCAATAG 61.377 60.000 4.35 0.00 41.15 1.73
158 159 1.377987 GCACCAAGCGGGACCAATA 60.378 57.895 4.35 0.00 41.15 1.90
159 160 2.676471 GCACCAAGCGGGACCAAT 60.676 61.111 4.35 0.00 41.15 3.16
175 176 4.589675 TTGGTCCCGGTTGGTGGC 62.590 66.667 0.00 0.00 34.77 5.01
176 177 1.901464 CTTTGGTCCCGGTTGGTGG 60.901 63.158 0.00 0.00 34.77 4.61
177 178 1.901464 CCTTTGGTCCCGGTTGGTG 60.901 63.158 0.00 0.00 34.77 4.17
178 179 2.518933 CCTTTGGTCCCGGTTGGT 59.481 61.111 0.00 0.00 34.77 3.67
179 180 2.989253 GCCTTTGGTCCCGGTTGG 60.989 66.667 0.00 0.00 0.00 3.77
180 181 2.989253 GGCCTTTGGTCCCGGTTG 60.989 66.667 0.00 0.00 0.00 3.77
181 182 4.295199 GGGCCTTTGGTCCCGGTT 62.295 66.667 0.84 0.00 42.67 4.44
187 188 2.361737 GCAGGAGGGCCTTTGGTC 60.362 66.667 7.89 0.00 43.90 4.02
197 198 4.101448 CCGAACCCAGGCAGGAGG 62.101 72.222 0.00 0.00 41.22 4.30
215 216 3.345808 CTTCACGTGGCCGGTGTG 61.346 66.667 21.87 18.03 38.78 3.82
216 217 4.619227 CCTTCACGTGGCCGGTGT 62.619 66.667 21.87 7.49 38.78 4.16
223 224 1.746615 CAGATGGGCCTTCACGTGG 60.747 63.158 20.31 0.00 0.00 4.94
224 225 1.003355 ACAGATGGGCCTTCACGTG 60.003 57.895 20.31 9.94 0.00 4.49
225 226 1.296715 GACAGATGGGCCTTCACGT 59.703 57.895 20.31 16.10 0.00 4.49
226 227 1.450312 GGACAGATGGGCCTTCACG 60.450 63.158 20.31 13.29 0.00 4.35
227 228 1.077429 GGGACAGATGGGCCTTCAC 60.077 63.158 20.31 11.21 0.00 3.18
228 229 2.669133 CGGGACAGATGGGCCTTCA 61.669 63.158 20.31 0.00 0.00 3.02
229 230 1.700042 ATCGGGACAGATGGGCCTTC 61.700 60.000 11.32 11.32 0.00 3.46
230 231 1.281925 AATCGGGACAGATGGGCCTT 61.282 55.000 4.53 0.00 0.00 4.35
231 232 1.694169 AATCGGGACAGATGGGCCT 60.694 57.895 4.53 0.00 0.00 5.19
232 233 1.227973 GAATCGGGACAGATGGGCC 60.228 63.158 0.00 0.00 0.00 5.80
233 234 1.595382 CGAATCGGGACAGATGGGC 60.595 63.158 0.00 0.00 0.00 5.36
234 235 0.530650 CACGAATCGGGACAGATGGG 60.531 60.000 7.80 0.00 28.17 4.00
235 236 0.175760 ACACGAATCGGGACAGATGG 59.824 55.000 13.47 0.00 32.98 3.51
236 237 2.863401 TACACGAATCGGGACAGATG 57.137 50.000 13.47 0.00 32.98 2.90
237 238 3.021695 TCTTACACGAATCGGGACAGAT 58.978 45.455 13.47 0.00 32.98 2.90
238 239 2.439409 TCTTACACGAATCGGGACAGA 58.561 47.619 13.47 9.32 32.98 3.41
239 240 2.921754 GTTCTTACACGAATCGGGACAG 59.078 50.000 13.47 6.84 32.98 3.51
240 241 2.353011 GGTTCTTACACGAATCGGGACA 60.353 50.000 13.47 0.00 32.98 4.02
241 242 2.265683 GGTTCTTACACGAATCGGGAC 58.734 52.381 13.47 0.00 32.98 4.46
242 243 1.135315 CGGTTCTTACACGAATCGGGA 60.135 52.381 13.47 0.00 42.24 5.14
243 244 1.274596 CGGTTCTTACACGAATCGGG 58.725 55.000 2.20 2.20 42.24 5.14
245 246 1.135315 TCCCGGTTCTTACACGAATCG 60.135 52.381 0.00 0.00 44.73 3.34
246 247 2.094338 AGTCCCGGTTCTTACACGAATC 60.094 50.000 0.00 0.00 0.00 2.52
247 248 1.897802 AGTCCCGGTTCTTACACGAAT 59.102 47.619 0.00 0.00 0.00 3.34
248 249 1.331214 AGTCCCGGTTCTTACACGAA 58.669 50.000 0.00 0.00 0.00 3.85
249 250 2.198827 TAGTCCCGGTTCTTACACGA 57.801 50.000 0.00 0.00 0.00 4.35
250 251 3.248266 CTTTAGTCCCGGTTCTTACACG 58.752 50.000 0.00 0.00 0.00 4.49
251 252 3.593096 CCTTTAGTCCCGGTTCTTACAC 58.407 50.000 0.00 0.00 0.00 2.90
252 253 2.568509 CCCTTTAGTCCCGGTTCTTACA 59.431 50.000 0.00 0.00 0.00 2.41
253 254 2.568956 ACCCTTTAGTCCCGGTTCTTAC 59.431 50.000 0.00 0.00 0.00 2.34
254 255 2.906568 ACCCTTTAGTCCCGGTTCTTA 58.093 47.619 0.00 0.00 0.00 2.10
255 256 1.738474 ACCCTTTAGTCCCGGTTCTT 58.262 50.000 0.00 0.00 0.00 2.52
256 257 1.738474 AACCCTTTAGTCCCGGTTCT 58.262 50.000 0.00 0.15 33.22 3.01
257 258 2.093288 CCTAACCCTTTAGTCCCGGTTC 60.093 54.545 0.00 0.00 39.33 3.62
258 259 1.911357 CCTAACCCTTTAGTCCCGGTT 59.089 52.381 0.00 0.00 41.43 4.44
259 260 1.079323 TCCTAACCCTTTAGTCCCGGT 59.921 52.381 0.00 0.00 33.92 5.28
260 261 1.483827 GTCCTAACCCTTTAGTCCCGG 59.516 57.143 0.00 0.00 33.92 5.73
261 262 2.181975 TGTCCTAACCCTTTAGTCCCG 58.818 52.381 0.00 0.00 33.92 5.14
262 263 4.857130 AATGTCCTAACCCTTTAGTCCC 57.143 45.455 0.00 0.00 33.92 4.46
263 264 6.556974 ACTAATGTCCTAACCCTTTAGTCC 57.443 41.667 0.00 0.00 33.92 3.85
264 265 7.704047 CGTTACTAATGTCCTAACCCTTTAGTC 59.296 40.741 0.00 0.00 33.92 2.59
265 266 7.397192 TCGTTACTAATGTCCTAACCCTTTAGT 59.603 37.037 0.00 0.00 33.92 2.24
266 267 7.704047 GTCGTTACTAATGTCCTAACCCTTTAG 59.296 40.741 0.00 0.00 35.35 1.85
267 268 7.363793 GGTCGTTACTAATGTCCTAACCCTTTA 60.364 40.741 0.00 0.00 0.00 1.85
268 269 6.401394 GTCGTTACTAATGTCCTAACCCTTT 58.599 40.000 0.00 0.00 0.00 3.11
269 270 5.105187 GGTCGTTACTAATGTCCTAACCCTT 60.105 44.000 0.00 0.00 0.00 3.95
270 271 4.403752 GGTCGTTACTAATGTCCTAACCCT 59.596 45.833 0.00 0.00 0.00 4.34
271 272 4.403752 AGGTCGTTACTAATGTCCTAACCC 59.596 45.833 5.32 0.00 34.77 4.11
272 273 5.588958 AGGTCGTTACTAATGTCCTAACC 57.411 43.478 5.32 0.00 34.77 2.85
273 274 7.895975 AAAAGGTCGTTACTAATGTCCTAAC 57.104 36.000 7.10 0.00 35.34 2.34
274 275 8.806146 ACTAAAAGGTCGTTACTAATGTCCTAA 58.194 33.333 7.10 0.00 35.34 2.69
275 276 8.353423 ACTAAAAGGTCGTTACTAATGTCCTA 57.647 34.615 7.10 0.00 35.34 2.94
276 277 7.237209 ACTAAAAGGTCGTTACTAATGTCCT 57.763 36.000 2.00 2.00 37.51 3.85
277 278 6.533012 GGACTAAAAGGTCGTTACTAATGTCC 59.467 42.308 0.00 0.00 37.12 4.02
278 279 6.533012 GGGACTAAAAGGTCGTTACTAATGTC 59.467 42.308 0.00 0.00 37.12 3.06
279 280 6.401394 GGGACTAAAAGGTCGTTACTAATGT 58.599 40.000 0.00 0.00 37.12 2.71
280 281 5.517770 CGGGACTAAAAGGTCGTTACTAATG 59.482 44.000 0.00 0.00 37.12 1.90
281 282 5.394553 CCGGGACTAAAAGGTCGTTACTAAT 60.395 44.000 0.00 0.00 37.12 1.73
282 283 4.082245 CCGGGACTAAAAGGTCGTTACTAA 60.082 45.833 0.00 0.00 37.12 2.24
283 284 3.443681 CCGGGACTAAAAGGTCGTTACTA 59.556 47.826 0.00 0.00 37.12 1.82
284 285 2.232208 CCGGGACTAAAAGGTCGTTACT 59.768 50.000 0.00 0.00 37.12 2.24
285 286 2.029020 ACCGGGACTAAAAGGTCGTTAC 60.029 50.000 6.32 0.00 37.12 2.50
286 287 2.247358 ACCGGGACTAAAAGGTCGTTA 58.753 47.619 6.32 0.00 37.12 3.18
287 288 1.051008 ACCGGGACTAAAAGGTCGTT 58.949 50.000 6.32 0.00 37.12 3.85
288 289 1.001293 GAACCGGGACTAAAAGGTCGT 59.999 52.381 6.32 0.00 35.68 4.34
289 290 1.001181 TGAACCGGGACTAAAAGGTCG 59.999 52.381 6.32 0.00 35.68 4.79
290 291 2.224354 TGTGAACCGGGACTAAAAGGTC 60.224 50.000 6.32 0.00 35.68 3.85
291 292 1.770061 TGTGAACCGGGACTAAAAGGT 59.230 47.619 6.32 0.00 38.88 3.50
292 293 2.554370 TGTGAACCGGGACTAAAAGG 57.446 50.000 6.32 0.00 0.00 3.11
293 294 3.004002 GGTTTGTGAACCGGGACTAAAAG 59.996 47.826 6.32 0.00 45.43 2.27
294 295 2.950975 GGTTTGTGAACCGGGACTAAAA 59.049 45.455 6.32 0.00 45.43 1.52
295 296 2.574450 GGTTTGTGAACCGGGACTAAA 58.426 47.619 6.32 0.00 45.43 1.85
296 297 2.259266 GGTTTGTGAACCGGGACTAA 57.741 50.000 6.32 0.00 45.43 2.24
298 299 4.892002 GGTTTGTGAACCGGGACT 57.108 55.556 6.32 0.00 45.43 3.85
305 306 2.424246 TCTTTTGTCCCGGTTTGTGAAC 59.576 45.455 0.00 0.00 34.96 3.18
306 307 2.424246 GTCTTTTGTCCCGGTTTGTGAA 59.576 45.455 0.00 0.00 0.00 3.18
307 308 2.018515 GTCTTTTGTCCCGGTTTGTGA 58.981 47.619 0.00 0.00 0.00 3.58
308 309 1.066454 GGTCTTTTGTCCCGGTTTGTG 59.934 52.381 0.00 0.00 0.00 3.33
309 310 1.395635 GGTCTTTTGTCCCGGTTTGT 58.604 50.000 0.00 0.00 0.00 2.83
310 311 0.671796 GGGTCTTTTGTCCCGGTTTG 59.328 55.000 0.00 0.00 37.99 2.93
311 312 3.120796 GGGTCTTTTGTCCCGGTTT 57.879 52.632 0.00 0.00 37.99 3.27
312 313 4.914128 GGGTCTTTTGTCCCGGTT 57.086 55.556 0.00 0.00 37.99 4.44
316 317 2.889045 GTTGGTAAGGGTCTTTTGTCCC 59.111 50.000 0.00 0.00 46.27 4.46
317 318 2.889045 GGTTGGTAAGGGTCTTTTGTCC 59.111 50.000 0.00 0.00 0.00 4.02
318 319 2.551032 CGGTTGGTAAGGGTCTTTTGTC 59.449 50.000 0.00 0.00 0.00 3.18
319 320 2.578786 CGGTTGGTAAGGGTCTTTTGT 58.421 47.619 0.00 0.00 0.00 2.83
320 321 1.883926 CCGGTTGGTAAGGGTCTTTTG 59.116 52.381 0.00 0.00 0.00 2.44
321 322 1.202964 CCCGGTTGGTAAGGGTCTTTT 60.203 52.381 0.00 0.00 40.27 2.27
322 323 0.402887 CCCGGTTGGTAAGGGTCTTT 59.597 55.000 0.00 0.00 40.27 2.52
323 324 0.474273 TCCCGGTTGGTAAGGGTCTT 60.474 55.000 0.00 0.00 45.27 3.01
324 325 1.159184 TCCCGGTTGGTAAGGGTCT 59.841 57.895 0.00 0.00 45.27 3.85
325 326 1.297689 GTCCCGGTTGGTAAGGGTC 59.702 63.158 0.00 0.00 45.27 4.46
326 327 2.586293 CGTCCCGGTTGGTAAGGGT 61.586 63.158 0.00 0.00 45.27 4.34
327 328 1.829523 TTCGTCCCGGTTGGTAAGGG 61.830 60.000 0.00 0.00 46.40 3.95
328 329 0.251073 ATTCGTCCCGGTTGGTAAGG 59.749 55.000 0.00 0.00 34.77 2.69
329 330 1.365699 CATTCGTCCCGGTTGGTAAG 58.634 55.000 0.00 0.00 34.77 2.34
330 331 0.036199 CCATTCGTCCCGGTTGGTAA 60.036 55.000 0.00 0.00 34.77 2.85
331 332 1.597989 CCATTCGTCCCGGTTGGTA 59.402 57.895 0.00 0.00 34.77 3.25
332 333 2.349755 CCATTCGTCCCGGTTGGT 59.650 61.111 0.00 0.00 34.77 3.67
333 334 2.437716 CCCATTCGTCCCGGTTGG 60.438 66.667 0.00 0.00 32.22 3.77
334 335 2.437716 CCCCATTCGTCCCGGTTG 60.438 66.667 0.00 0.00 0.00 3.77
335 336 2.071636 AAACCCCATTCGTCCCGGTT 62.072 55.000 0.00 0.00 38.45 4.44
336 337 2.071636 AAAACCCCATTCGTCCCGGT 62.072 55.000 0.00 0.00 0.00 5.28
337 338 0.896479 AAAAACCCCATTCGTCCCGG 60.896 55.000 0.00 0.00 0.00 5.73
338 339 2.648593 AAAAACCCCATTCGTCCCG 58.351 52.632 0.00 0.00 0.00 5.14
353 354 4.905429 TCTGCCATGCACTAGTAGAAAAA 58.095 39.130 3.59 0.00 33.79 1.94
354 355 4.551702 TCTGCCATGCACTAGTAGAAAA 57.448 40.909 3.59 0.00 33.79 2.29
355 356 4.551702 TTCTGCCATGCACTAGTAGAAA 57.448 40.909 3.59 0.00 33.79 2.52
356 357 4.162131 TCATTCTGCCATGCACTAGTAGAA 59.838 41.667 12.97 12.97 36.80 2.10
357 358 3.706086 TCATTCTGCCATGCACTAGTAGA 59.294 43.478 3.59 0.00 33.79 2.59
358 359 3.806521 GTCATTCTGCCATGCACTAGTAG 59.193 47.826 0.00 0.00 33.79 2.57
359 360 3.197549 TGTCATTCTGCCATGCACTAGTA 59.802 43.478 0.00 0.00 33.79 1.82
360 361 2.026915 TGTCATTCTGCCATGCACTAGT 60.027 45.455 0.00 0.00 33.79 2.57
361 362 2.353889 GTGTCATTCTGCCATGCACTAG 59.646 50.000 0.00 0.00 33.79 2.57
362 363 2.026915 AGTGTCATTCTGCCATGCACTA 60.027 45.455 0.00 0.00 38.57 2.74
363 364 1.171308 GTGTCATTCTGCCATGCACT 58.829 50.000 0.00 0.00 33.79 4.40
364 365 1.131883 GAGTGTCATTCTGCCATGCAC 59.868 52.381 0.00 0.00 33.79 4.57
365 366 1.456296 GAGTGTCATTCTGCCATGCA 58.544 50.000 0.00 0.00 36.92 3.96
366 367 0.737219 GGAGTGTCATTCTGCCATGC 59.263 55.000 0.00 0.00 0.00 4.06
367 368 2.414994 AGGAGTGTCATTCTGCCATG 57.585 50.000 0.00 0.00 0.00 3.66
368 369 4.785346 ATTAGGAGTGTCATTCTGCCAT 57.215 40.909 0.00 0.00 0.00 4.40
430 432 2.267642 CGGCCGATTCAGACCCAA 59.732 61.111 24.07 0.00 0.00 4.12
447 449 2.289002 CGTACCCCATACACTACTCGTC 59.711 54.545 0.00 0.00 32.79 4.20
481 483 4.060038 GGCAAGCAGCTGAGTATAGTAA 57.940 45.455 20.43 0.00 44.79 2.24
502 504 3.843240 GACGCGGCTCAAAGCTCG 61.843 66.667 12.47 10.74 41.99 5.03
542 544 1.588674 TGATCGTCAACGTTGCCTTT 58.411 45.000 23.47 8.26 40.80 3.11
597 605 0.661020 CCCAGAACGTTGTGTGAACC 59.339 55.000 22.25 0.00 0.00 3.62
647 655 4.202151 GCCAACATGGATTTGGATTACTCC 60.202 45.833 15.79 0.00 45.69 3.85
665 675 3.826729 AGAATACTTTCCCACAAGCCAAC 59.173 43.478 0.00 0.00 31.84 3.77
710 722 1.051812 CGGATGATCCCTTACCTGCT 58.948 55.000 5.78 0.00 31.13 4.24
720 732 0.389391 ATCACGGTCACGGATGATCC 59.611 55.000 0.08 0.08 46.48 3.36
790 802 9.438291 CGTTCTTCATATCATATTGTTTTGGAC 57.562 33.333 0.00 0.00 0.00 4.02
791 803 9.389755 TCGTTCTTCATATCATATTGTTTTGGA 57.610 29.630 0.00 0.00 0.00 3.53
799 812 7.220030 AGCCAGTTCGTTCTTCATATCATATT 58.780 34.615 0.00 0.00 0.00 1.28
811 824 2.554032 CCAAATTGAGCCAGTTCGTTCT 59.446 45.455 0.00 0.00 0.00 3.01
826 844 1.285641 CACGCCGCTTGACCAAATT 59.714 52.632 0.00 0.00 0.00 1.82
891 915 7.439157 TTTACAAGAGTGTTGAATGATGAGG 57.561 36.000 7.07 0.00 39.30 3.86
950 990 3.002656 GGTCGATCGTAAGGTAATCGTGA 59.997 47.826 15.94 0.00 40.94 4.35
955 1023 4.826183 AGCTAAGGTCGATCGTAAGGTAAT 59.174 41.667 15.94 0.00 38.47 1.89
959 1027 4.275443 ACTTAGCTAAGGTCGATCGTAAGG 59.725 45.833 31.67 8.01 37.62 2.69
962 1030 5.464722 CAGTACTTAGCTAAGGTCGATCGTA 59.535 44.000 31.67 14.26 37.62 3.43
1017 1085 0.981943 CCCTACCTCCGAAAACTGGT 59.018 55.000 0.00 0.00 36.66 4.00
1058 1126 2.616458 GCACCACCATTCCCTCCCT 61.616 63.158 0.00 0.00 0.00 4.20
1163 1261 1.978580 CACCTCCTACTTGGAACTGGT 59.021 52.381 0.00 0.00 45.63 4.00
1280 1483 3.428282 CGCCCGCACCTACAAACC 61.428 66.667 0.00 0.00 0.00 3.27
1392 1790 1.271163 CCACCACCGTACAACAATCCT 60.271 52.381 0.00 0.00 0.00 3.24
1427 4070 1.376037 CCAAACTCTCCCACGGCTC 60.376 63.158 0.00 0.00 0.00 4.70
1448 4091 3.698263 AACCCTCCTCCCCTAGCCG 62.698 68.421 0.00 0.00 0.00 5.52
1478 4142 0.036952 AGCGGGCAGAATATCATCGG 60.037 55.000 0.00 0.00 0.00 4.18
1497 4161 4.439057 GCATAATTCCTCGGTAGAACACA 58.561 43.478 0.00 0.00 0.00 3.72
1498 4162 3.489785 CGCATAATTCCTCGGTAGAACAC 59.510 47.826 0.00 0.00 0.00 3.32
1647 4318 5.067153 ACCTTGTTTGTGATTGTGAATTCGA 59.933 36.000 0.04 0.00 0.00 3.71
1711 4495 4.270245 AGCAAGAAAAGAGACAGAGAGG 57.730 45.455 0.00 0.00 0.00 3.69
1720 4504 9.548208 GCTAAGTGTAAAATAGCAAGAAAAGAG 57.452 33.333 0.00 0.00 41.28 2.85
1744 4528 4.393062 CACAACGATTGGACAGATAAAGCT 59.607 41.667 0.00 0.00 34.12 3.74
1762 4559 1.651132 CACGCTGTCAACGCACAAC 60.651 57.895 0.00 0.00 0.00 3.32
1925 4754 5.389516 CGCACAAGCTAAACGTCTAGAAAAT 60.390 40.000 0.00 0.00 39.10 1.82
1946 4775 5.168569 CAGGATAGAAAGTTAGACAACGCA 58.831 41.667 0.00 0.00 39.78 5.24
1984 4815 4.025229 GCATCGTTGTCACTGTTCAACTAA 60.025 41.667 17.41 9.94 40.88 2.24
1986 4817 2.287915 GCATCGTTGTCACTGTTCAACT 59.712 45.455 17.41 4.05 40.88 3.16
2064 4895 2.742738 GGCGCCATGTTTGCATTGC 61.743 57.895 24.80 0.46 39.52 3.56
2065 4896 0.949588 TTGGCGCCATGTTTGCATTG 60.950 50.000 33.25 0.00 31.99 2.82
2066 4897 0.671163 CTTGGCGCCATGTTTGCATT 60.671 50.000 33.25 0.00 31.99 3.56
2067 4898 1.079681 CTTGGCGCCATGTTTGCAT 60.080 52.632 33.25 0.00 35.32 3.96
2068 4899 2.144833 CTCTTGGCGCCATGTTTGCA 62.145 55.000 33.70 17.14 0.00 4.08
2102 4933 5.082059 GTCGCATCAAACAGATACACAAAG 58.918 41.667 0.00 0.00 34.43 2.77
2104 4935 4.061596 TGTCGCATCAAACAGATACACAA 58.938 39.130 0.00 0.00 34.43 3.33
2145 4976 4.082408 CCGGTTGAAGATAAGTTTTTCCCC 60.082 45.833 0.00 0.00 0.00 4.81
2153 4984 3.535561 CATCAGCCGGTTGAAGATAAGT 58.464 45.455 25.48 3.60 0.00 2.24
2158 4989 1.741401 CGCATCAGCCGGTTGAAGA 60.741 57.895 25.48 2.41 37.52 2.87
2199 5030 4.855715 TCAGGATTGATCTAACGGCTAG 57.144 45.455 0.00 0.00 0.00 3.42
2331 5164 4.036380 ACCTTCACCACTGAATCGTTTTTC 59.964 41.667 0.00 0.00 35.78 2.29
2406 5242 9.671279 AAACAATTCCTTTCTTTCTGAAACAAT 57.329 25.926 0.00 0.00 39.50 2.71
2515 5356 7.507277 TGCAATATCTGACCACTTACTCTCTAT 59.493 37.037 0.00 0.00 0.00 1.98
2524 5365 5.255687 TCATGTTGCAATATCTGACCACTT 58.744 37.500 5.61 0.00 0.00 3.16
2558 5399 4.503741 TTGCAACCAGAGCTATGTTTTC 57.496 40.909 7.70 0.00 0.00 2.29
2559 5400 4.935352 TTTGCAACCAGAGCTATGTTTT 57.065 36.364 7.70 0.00 0.00 2.43
2602 5443 4.056125 CAGCGGCGACCTCTCACA 62.056 66.667 12.98 0.00 0.00 3.58
2642 5483 4.845580 CTCAGCCCCGCGAGCAAT 62.846 66.667 20.69 0.99 0.00 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.