Multiple sequence alignment - TraesCS7A01G127100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G127100 chr7A 100.000 4463 0 0 1 4463 81643304 81638842 0.000000e+00 8242.0
1 TraesCS7A01G127100 chr7A 85.048 2789 346 42 1164 3916 81769729 81766976 0.000000e+00 2774.0
2 TraesCS7A01G127100 chr7A 89.067 1436 142 11 2062 3486 81777036 81775605 0.000000e+00 1768.0
3 TraesCS7A01G127100 chr7A 82.426 1047 160 13 1001 2029 81778067 81777027 0.000000e+00 893.0
4 TraesCS7A01G127100 chr7A 94.521 73 4 0 1 73 62883685 62883757 3.650000e-21 113.0
5 TraesCS7A01G127100 chr7D 95.205 3608 141 10 860 4463 78211233 78207654 0.000000e+00 5675.0
6 TraesCS7A01G127100 chr7D 83.465 2782 390 36 1013 3769 78302582 78299846 0.000000e+00 2525.0
7 TraesCS7A01G127100 chr7D 87.346 1541 178 9 2062 3594 78308160 78306629 0.000000e+00 1749.0
8 TraesCS7A01G127100 chr7D 84.100 1000 144 10 1033 2029 78309138 78308151 0.000000e+00 952.0
9 TraesCS7A01G127100 chr7D 95.833 72 3 0 1 72 58622863 58622934 2.820000e-22 117.0
10 TraesCS7A01G127100 chr7D 92.063 63 3 2 806 866 78211310 78211248 2.210000e-13 87.9
11 TraesCS7A01G127100 chr7B 94.483 3607 161 17 860 4463 25632400 25628829 0.000000e+00 5524.0
12 TraesCS7A01G127100 chr7B 83.291 2783 394 38 1013 3769 25655729 25652992 0.000000e+00 2497.0
13 TraesCS7A01G127100 chr7B 86.840 1535 182 11 2062 3594 25887466 25888982 0.000000e+00 1698.0
14 TraesCS7A01G127100 chr7B 83.201 1131 150 29 915 2029 25886369 25887475 0.000000e+00 1000.0
15 TraesCS7A01G127100 chr7B 87.162 740 91 4 2062 2799 25664207 25663470 0.000000e+00 837.0
16 TraesCS7A01G127100 chr7B 89.160 655 71 0 2829 3483 25663476 25662822 0.000000e+00 817.0
17 TraesCS7A01G127100 chr7B 83.101 645 88 12 1001 1636 25668999 25668367 6.480000e-158 568.0
18 TraesCS7A01G127100 chr7B 83.511 376 60 2 1655 2029 25664572 25664198 2.550000e-92 350.0
19 TraesCS7A01G127100 chr7B 88.820 161 16 1 551 709 25634654 25634494 3.520000e-46 196.0
20 TraesCS7A01G127100 chr7B 93.421 76 4 1 1 76 25634727 25634653 1.310000e-20 111.0
21 TraesCS7A01G127100 chr7B 100.000 29 0 0 608 636 25657641 25657613 2.000000e-03 54.7
22 TraesCS7A01G127100 chr5D 95.775 71 2 1 1 71 425984555 425984486 3.650000e-21 113.0
23 TraesCS7A01G127100 chr5D 94.444 72 4 0 1 72 499619204 499619133 1.310000e-20 111.0
24 TraesCS7A01G127100 chr5B 93.421 76 5 0 1 76 650165452 650165377 3.650000e-21 113.0
25 TraesCS7A01G127100 chr5B 94.521 73 4 0 1 73 664954457 664954385 3.650000e-21 113.0
26 TraesCS7A01G127100 chr5A 94.521 73 4 0 1 73 655996985 655996913 3.650000e-21 113.0
27 TraesCS7A01G127100 chr5A 92.208 77 4 2 1 76 641056551 641056476 1.700000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G127100 chr7A 81638842 81643304 4462 True 8242.000000 8242 100.000000 1 4463 1 chr7A.!!$R1 4462
1 TraesCS7A01G127100 chr7A 81766976 81769729 2753 True 2774.000000 2774 85.048000 1164 3916 1 chr7A.!!$R2 2752
2 TraesCS7A01G127100 chr7A 81775605 81778067 2462 True 1330.500000 1768 85.746500 1001 3486 2 chr7A.!!$R3 2485
3 TraesCS7A01G127100 chr7D 78207654 78211310 3656 True 2881.450000 5675 93.634000 806 4463 2 chr7D.!!$R2 3657
4 TraesCS7A01G127100 chr7D 78299846 78302582 2736 True 2525.000000 2525 83.465000 1013 3769 1 chr7D.!!$R1 2756
5 TraesCS7A01G127100 chr7D 78306629 78309138 2509 True 1350.500000 1749 85.723000 1033 3594 2 chr7D.!!$R3 2561
6 TraesCS7A01G127100 chr7B 25628829 25634727 5898 True 1943.666667 5524 92.241333 1 4463 3 chr7B.!!$R1 4462
7 TraesCS7A01G127100 chr7B 25886369 25888982 2613 False 1349.000000 1698 85.020500 915 3594 2 chr7B.!!$F1 2679
8 TraesCS7A01G127100 chr7B 25652992 25657641 4649 True 1275.850000 2497 91.645500 608 3769 2 chr7B.!!$R2 3161
9 TraesCS7A01G127100 chr7B 25662822 25668999 6177 True 643.000000 837 85.733500 1001 3483 4 chr7B.!!$R3 2482

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
548 549 0.034337 TACTTGCCGTCTTGGACACC 59.966 55.0 0.0 0.0 42.00 4.16 F
1028 4499 0.037232 ACCAGAGCTGCCTACGTTTC 60.037 55.0 0.0 0.0 0.00 2.78 F
2052 9347 0.179020 CAGCCAACTGGGACAACAGA 60.179 55.0 0.0 0.0 40.97 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2302 9675 0.322008 GACAGCAACCTCCTGGGAAG 60.322 60.000 0.0 0.0 38.76 3.46 R
2681 10054 4.631377 TCACATCATTTAGCTTCTTCACGG 59.369 41.667 0.0 0.0 0.00 4.94 R
3968 11397 0.464373 AGGTTGATATGCGGGCAGTG 60.464 55.000 0.0 0.0 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 5.606505 TCTGCAAAATTAAACTTTGGTCCC 58.393 37.500 12.70 1.17 34.89 4.46
69 70 4.754618 GCAAAATTAAACTTTGGTCCCTGG 59.245 41.667 12.70 0.00 34.89 4.45
72 73 1.154430 TAAACTTTGGTCCCTGGCCT 58.846 50.000 3.32 0.00 0.00 5.19
74 75 0.698818 AACTTTGGTCCCTGGCCTAG 59.301 55.000 3.32 0.00 0.00 3.02
75 76 1.077429 CTTTGGTCCCTGGCCTAGC 60.077 63.158 3.32 0.00 0.00 3.42
76 77 1.850289 TTTGGTCCCTGGCCTAGCA 60.850 57.895 3.32 0.00 0.00 3.49
77 78 1.431195 TTTGGTCCCTGGCCTAGCAA 61.431 55.000 3.32 6.40 0.00 3.91
78 79 1.852157 TTGGTCCCTGGCCTAGCAAG 61.852 60.000 3.32 0.00 0.00 4.01
79 80 1.995626 GGTCCCTGGCCTAGCAAGA 60.996 63.158 3.32 0.00 29.58 3.02
80 81 1.562672 GGTCCCTGGCCTAGCAAGAA 61.563 60.000 3.32 0.00 29.58 2.52
81 82 0.548510 GTCCCTGGCCTAGCAAGAAT 59.451 55.000 3.32 0.00 29.58 2.40
82 83 0.839946 TCCCTGGCCTAGCAAGAATC 59.160 55.000 3.32 0.00 29.58 2.52
83 84 0.179006 CCCTGGCCTAGCAAGAATCC 60.179 60.000 3.32 0.00 29.58 3.01
84 85 0.842635 CCTGGCCTAGCAAGAATCCT 59.157 55.000 3.32 0.00 29.58 3.24
85 86 2.050144 CCTGGCCTAGCAAGAATCCTA 58.950 52.381 3.32 0.00 29.58 2.94
86 87 2.038295 CCTGGCCTAGCAAGAATCCTAG 59.962 54.545 3.32 0.00 29.58 3.02
87 88 2.968574 CTGGCCTAGCAAGAATCCTAGA 59.031 50.000 3.32 0.00 34.36 2.43
88 89 3.582208 CTGGCCTAGCAAGAATCCTAGAT 59.418 47.826 3.32 0.00 34.36 1.98
89 90 3.326006 TGGCCTAGCAAGAATCCTAGATG 59.674 47.826 3.32 0.00 34.36 2.90
90 91 3.333804 GCCTAGCAAGAATCCTAGATGC 58.666 50.000 0.00 0.00 34.36 3.91
91 92 3.244353 GCCTAGCAAGAATCCTAGATGCA 60.244 47.826 0.00 0.00 39.42 3.96
92 93 4.744867 GCCTAGCAAGAATCCTAGATGCAA 60.745 45.833 0.00 0.00 39.42 4.08
93 94 5.558818 CCTAGCAAGAATCCTAGATGCAAT 58.441 41.667 0.00 0.00 39.42 3.56
94 95 6.002704 CCTAGCAAGAATCCTAGATGCAATT 58.997 40.000 0.00 0.00 39.42 2.32
95 96 6.489361 CCTAGCAAGAATCCTAGATGCAATTT 59.511 38.462 0.00 0.00 39.42 1.82
96 97 6.786967 AGCAAGAATCCTAGATGCAATTTT 57.213 33.333 0.00 0.00 39.42 1.82
97 98 6.803642 AGCAAGAATCCTAGATGCAATTTTC 58.196 36.000 0.00 0.00 39.42 2.29
98 99 6.606395 AGCAAGAATCCTAGATGCAATTTTCT 59.394 34.615 0.00 0.00 39.42 2.52
99 100 6.696148 GCAAGAATCCTAGATGCAATTTTCTG 59.304 38.462 0.00 0.00 37.00 3.02
100 101 6.956202 AGAATCCTAGATGCAATTTTCTGG 57.044 37.500 0.00 0.00 0.00 3.86
101 102 6.430007 AGAATCCTAGATGCAATTTTCTGGT 58.570 36.000 0.00 0.00 0.00 4.00
102 103 6.894103 AGAATCCTAGATGCAATTTTCTGGTT 59.106 34.615 0.00 0.00 0.00 3.67
103 104 7.398332 AGAATCCTAGATGCAATTTTCTGGTTT 59.602 33.333 0.00 0.00 0.00 3.27
104 105 6.271488 TCCTAGATGCAATTTTCTGGTTTG 57.729 37.500 0.00 0.00 0.00 2.93
105 106 5.185635 TCCTAGATGCAATTTTCTGGTTTGG 59.814 40.000 0.00 0.00 0.00 3.28
106 107 4.961438 AGATGCAATTTTCTGGTTTGGT 57.039 36.364 0.00 0.00 0.00 3.67
107 108 4.886579 AGATGCAATTTTCTGGTTTGGTC 58.113 39.130 0.00 0.00 0.00 4.02
108 109 3.467374 TGCAATTTTCTGGTTTGGTCC 57.533 42.857 0.00 0.00 0.00 4.46
109 110 3.037549 TGCAATTTTCTGGTTTGGTCCT 58.962 40.909 0.00 0.00 0.00 3.85
110 111 3.069443 TGCAATTTTCTGGTTTGGTCCTC 59.931 43.478 0.00 0.00 0.00 3.71
111 112 3.857010 GCAATTTTCTGGTTTGGTCCTCG 60.857 47.826 0.00 0.00 0.00 4.63
112 113 1.314730 TTTTCTGGTTTGGTCCTCGC 58.685 50.000 0.00 0.00 0.00 5.03
113 114 0.472471 TTTCTGGTTTGGTCCTCGCT 59.528 50.000 0.00 0.00 0.00 4.93
114 115 0.034896 TTCTGGTTTGGTCCTCGCTC 59.965 55.000 0.00 0.00 0.00 5.03
115 116 0.832135 TCTGGTTTGGTCCTCGCTCT 60.832 55.000 0.00 0.00 0.00 4.09
116 117 0.895530 CTGGTTTGGTCCTCGCTCTA 59.104 55.000 0.00 0.00 0.00 2.43
117 118 1.482593 CTGGTTTGGTCCTCGCTCTAT 59.517 52.381 0.00 0.00 0.00 1.98
118 119 1.480954 TGGTTTGGTCCTCGCTCTATC 59.519 52.381 0.00 0.00 0.00 2.08
119 120 1.757699 GGTTTGGTCCTCGCTCTATCT 59.242 52.381 0.00 0.00 0.00 1.98
120 121 2.168728 GGTTTGGTCCTCGCTCTATCTT 59.831 50.000 0.00 0.00 0.00 2.40
121 122 3.383825 GGTTTGGTCCTCGCTCTATCTTA 59.616 47.826 0.00 0.00 0.00 2.10
122 123 4.142004 GGTTTGGTCCTCGCTCTATCTTAA 60.142 45.833 0.00 0.00 0.00 1.85
123 124 4.920640 TTGGTCCTCGCTCTATCTTAAG 57.079 45.455 0.00 0.00 0.00 1.85
124 125 2.623889 TGGTCCTCGCTCTATCTTAAGC 59.376 50.000 0.00 0.00 35.13 3.09
143 144 2.652662 CGCAGCGAATCAAGATTACC 57.347 50.000 9.98 0.00 0.00 2.85
144 145 1.933181 CGCAGCGAATCAAGATTACCA 59.067 47.619 9.98 0.00 0.00 3.25
145 146 2.033407 CGCAGCGAATCAAGATTACCAG 60.033 50.000 9.98 0.00 0.00 4.00
146 147 2.289002 GCAGCGAATCAAGATTACCAGG 59.711 50.000 0.00 0.00 0.00 4.45
147 148 3.797039 CAGCGAATCAAGATTACCAGGA 58.203 45.455 0.00 0.00 0.00 3.86
148 149 4.191544 CAGCGAATCAAGATTACCAGGAA 58.808 43.478 0.00 0.00 0.00 3.36
149 150 4.818546 CAGCGAATCAAGATTACCAGGAAT 59.181 41.667 0.00 0.00 0.00 3.01
150 151 5.297776 CAGCGAATCAAGATTACCAGGAATT 59.702 40.000 0.00 0.00 0.00 2.17
151 152 5.297776 AGCGAATCAAGATTACCAGGAATTG 59.702 40.000 0.00 0.00 0.00 2.32
152 153 5.296780 GCGAATCAAGATTACCAGGAATTGA 59.703 40.000 0.00 0.00 0.00 2.57
153 154 6.183360 GCGAATCAAGATTACCAGGAATTGAA 60.183 38.462 0.00 0.00 31.14 2.69
154 155 7.189512 CGAATCAAGATTACCAGGAATTGAAC 58.810 38.462 0.00 0.00 31.14 3.18
155 156 6.683974 ATCAAGATTACCAGGAATTGAACG 57.316 37.500 0.00 0.00 31.14 3.95
156 157 5.556915 TCAAGATTACCAGGAATTGAACGT 58.443 37.500 0.00 0.00 0.00 3.99
157 158 6.703319 TCAAGATTACCAGGAATTGAACGTA 58.297 36.000 0.00 0.00 0.00 3.57
158 159 6.816640 TCAAGATTACCAGGAATTGAACGTAG 59.183 38.462 0.00 0.00 0.00 3.51
159 160 5.116882 AGATTACCAGGAATTGAACGTAGC 58.883 41.667 0.00 0.00 0.00 3.58
160 161 1.722011 ACCAGGAATTGAACGTAGCG 58.278 50.000 0.00 0.00 0.00 4.26
161 162 1.001633 ACCAGGAATTGAACGTAGCGT 59.998 47.619 0.00 0.00 43.97 5.07
171 172 2.729378 ACGTAGCGTTCGGTAAAGC 58.271 52.632 5.72 0.00 36.35 3.51
172 173 0.039256 ACGTAGCGTTCGGTAAAGCA 60.039 50.000 5.72 0.00 41.86 3.91
173 174 0.638746 CGTAGCGTTCGGTAAAGCAG 59.361 55.000 5.72 0.00 41.86 4.24
174 175 0.369248 GTAGCGTTCGGTAAAGCAGC 59.631 55.000 5.72 0.00 41.86 5.25
175 176 0.738412 TAGCGTTCGGTAAAGCAGCC 60.738 55.000 1.67 0.00 41.86 4.85
176 177 2.322081 GCGTTCGGTAAAGCAGCCA 61.322 57.895 0.00 0.00 39.55 4.75
177 178 1.495951 CGTTCGGTAAAGCAGCCAC 59.504 57.895 0.00 0.00 0.00 5.01
178 179 1.873863 GTTCGGTAAAGCAGCCACC 59.126 57.895 0.00 0.00 0.00 4.61
191 192 3.214123 CCACCGGCATGAGCATGG 61.214 66.667 0.00 0.00 44.61 3.66
192 193 2.124612 CACCGGCATGAGCATGGA 60.125 61.111 0.00 0.00 44.61 3.41
193 194 1.750018 CACCGGCATGAGCATGGAA 60.750 57.895 0.00 0.00 44.61 3.53
194 195 1.105167 CACCGGCATGAGCATGGAAT 61.105 55.000 0.00 0.00 44.61 3.01
195 196 0.396139 ACCGGCATGAGCATGGAATT 60.396 50.000 0.00 0.00 44.61 2.17
196 197 0.748450 CCGGCATGAGCATGGAATTT 59.252 50.000 12.00 0.00 44.61 1.82
197 198 1.955778 CCGGCATGAGCATGGAATTTA 59.044 47.619 12.00 0.00 44.61 1.40
198 199 2.287788 CCGGCATGAGCATGGAATTTAC 60.288 50.000 12.00 0.00 44.61 2.01
199 200 2.358582 CGGCATGAGCATGGAATTTACA 59.641 45.455 12.00 0.00 44.61 2.41
200 201 3.181488 CGGCATGAGCATGGAATTTACAA 60.181 43.478 12.00 0.00 44.61 2.41
201 202 4.365723 GGCATGAGCATGGAATTTACAAG 58.634 43.478 12.00 0.00 44.61 3.16
202 203 4.098349 GGCATGAGCATGGAATTTACAAGA 59.902 41.667 12.00 0.00 44.61 3.02
203 204 5.279384 GCATGAGCATGGAATTTACAAGAG 58.721 41.667 12.00 0.00 41.58 2.85
204 205 4.970662 TGAGCATGGAATTTACAAGAGC 57.029 40.909 0.00 0.00 0.00 4.09
205 206 3.696051 TGAGCATGGAATTTACAAGAGCC 59.304 43.478 0.00 0.00 0.00 4.70
206 207 3.696051 GAGCATGGAATTTACAAGAGCCA 59.304 43.478 0.00 0.00 0.00 4.75
207 208 4.284178 AGCATGGAATTTACAAGAGCCAT 58.716 39.130 0.00 0.00 36.62 4.40
208 209 4.713321 AGCATGGAATTTACAAGAGCCATT 59.287 37.500 0.00 0.00 34.10 3.16
209 210 5.045872 GCATGGAATTTACAAGAGCCATTC 58.954 41.667 0.00 0.00 34.10 2.67
210 211 5.594926 CATGGAATTTACAAGAGCCATTCC 58.405 41.667 0.00 0.00 42.27 3.01
211 212 4.671831 TGGAATTTACAAGAGCCATTCCA 58.328 39.130 7.67 7.67 46.94 3.53
212 213 4.706476 TGGAATTTACAAGAGCCATTCCAG 59.294 41.667 7.67 0.00 45.17 3.86
213 214 4.706962 GGAATTTACAAGAGCCATTCCAGT 59.293 41.667 4.66 0.00 41.76 4.00
214 215 5.393461 GGAATTTACAAGAGCCATTCCAGTG 60.393 44.000 4.66 0.00 41.76 3.66
215 216 2.113860 TACAAGAGCCATTCCAGTGC 57.886 50.000 0.00 0.00 0.00 4.40
216 217 0.610232 ACAAGAGCCATTCCAGTGCC 60.610 55.000 0.00 0.00 0.00 5.01
217 218 0.323178 CAAGAGCCATTCCAGTGCCT 60.323 55.000 0.00 0.00 0.00 4.75
218 219 0.034670 AAGAGCCATTCCAGTGCCTC 60.035 55.000 0.00 0.00 0.00 4.70
219 220 1.203441 AGAGCCATTCCAGTGCCTCA 61.203 55.000 0.00 0.00 0.00 3.86
220 221 0.322816 GAGCCATTCCAGTGCCTCAA 60.323 55.000 0.00 0.00 0.00 3.02
221 222 0.610232 AGCCATTCCAGTGCCTCAAC 60.610 55.000 0.00 0.00 0.00 3.18
222 223 0.895100 GCCATTCCAGTGCCTCAACA 60.895 55.000 0.00 0.00 0.00 3.33
223 224 1.619654 CCATTCCAGTGCCTCAACAA 58.380 50.000 0.00 0.00 0.00 2.83
224 225 1.542915 CCATTCCAGTGCCTCAACAAG 59.457 52.381 0.00 0.00 0.00 3.16
225 226 1.068055 CATTCCAGTGCCTCAACAAGC 60.068 52.381 0.00 0.00 0.00 4.01
226 227 0.106769 TTCCAGTGCCTCAACAAGCA 60.107 50.000 0.00 0.00 36.44 3.91
227 228 0.535780 TCCAGTGCCTCAACAAGCAG 60.536 55.000 0.00 0.00 40.28 4.24
228 229 0.535780 CCAGTGCCTCAACAAGCAGA 60.536 55.000 0.00 0.00 40.28 4.26
229 230 1.531423 CAGTGCCTCAACAAGCAGAT 58.469 50.000 0.00 0.00 40.28 2.90
230 231 2.616256 CCAGTGCCTCAACAAGCAGATA 60.616 50.000 0.00 0.00 40.28 1.98
231 232 3.276857 CAGTGCCTCAACAAGCAGATAT 58.723 45.455 0.00 0.00 40.28 1.63
232 233 3.311871 CAGTGCCTCAACAAGCAGATATC 59.688 47.826 0.00 0.00 40.28 1.63
233 234 3.199508 AGTGCCTCAACAAGCAGATATCT 59.800 43.478 0.00 0.00 40.28 1.98
234 235 3.559242 GTGCCTCAACAAGCAGATATCTC 59.441 47.826 1.03 0.00 40.28 2.75
235 236 3.137533 GCCTCAACAAGCAGATATCTCC 58.862 50.000 1.03 0.00 0.00 3.71
236 237 3.432749 GCCTCAACAAGCAGATATCTCCA 60.433 47.826 1.03 0.00 0.00 3.86
237 238 4.746089 GCCTCAACAAGCAGATATCTCCAT 60.746 45.833 1.03 0.00 0.00 3.41
238 239 4.996122 CCTCAACAAGCAGATATCTCCATC 59.004 45.833 1.03 0.00 0.00 3.51
239 240 5.454329 CCTCAACAAGCAGATATCTCCATCA 60.454 44.000 1.03 0.00 0.00 3.07
240 241 5.363101 TCAACAAGCAGATATCTCCATCAC 58.637 41.667 1.03 0.00 0.00 3.06
241 242 4.348863 ACAAGCAGATATCTCCATCACC 57.651 45.455 1.03 0.00 0.00 4.02
242 243 3.244009 ACAAGCAGATATCTCCATCACCG 60.244 47.826 1.03 0.00 0.00 4.94
243 244 2.603021 AGCAGATATCTCCATCACCGT 58.397 47.619 1.03 0.00 0.00 4.83
244 245 2.560542 AGCAGATATCTCCATCACCGTC 59.439 50.000 1.03 0.00 0.00 4.79
245 246 2.297315 GCAGATATCTCCATCACCGTCA 59.703 50.000 1.03 0.00 0.00 4.35
246 247 3.858877 GCAGATATCTCCATCACCGTCAC 60.859 52.174 1.03 0.00 0.00 3.67
247 248 3.571828 CAGATATCTCCATCACCGTCACT 59.428 47.826 1.03 0.00 0.00 3.41
248 249 4.762251 CAGATATCTCCATCACCGTCACTA 59.238 45.833 1.03 0.00 0.00 2.74
249 250 5.417266 CAGATATCTCCATCACCGTCACTAT 59.583 44.000 1.03 0.00 0.00 2.12
250 251 6.599638 CAGATATCTCCATCACCGTCACTATA 59.400 42.308 1.03 0.00 0.00 1.31
251 252 6.826231 AGATATCTCCATCACCGTCACTATAG 59.174 42.308 0.00 0.00 0.00 1.31
252 253 4.166246 TCTCCATCACCGTCACTATAGT 57.834 45.455 0.00 0.00 0.00 2.12
253 254 4.135306 TCTCCATCACCGTCACTATAGTC 58.865 47.826 1.26 0.00 0.00 2.59
254 255 3.220110 TCCATCACCGTCACTATAGTCC 58.780 50.000 1.26 0.00 0.00 3.85
255 256 2.956333 CCATCACCGTCACTATAGTCCA 59.044 50.000 1.26 0.00 0.00 4.02
256 257 3.004839 CCATCACCGTCACTATAGTCCAG 59.995 52.174 1.26 0.00 0.00 3.86
257 258 2.022195 TCACCGTCACTATAGTCCAGC 58.978 52.381 1.26 0.00 0.00 4.85
258 259 2.025155 CACCGTCACTATAGTCCAGCT 58.975 52.381 1.26 0.00 0.00 4.24
259 260 3.118149 TCACCGTCACTATAGTCCAGCTA 60.118 47.826 1.26 0.00 0.00 3.32
260 261 3.630769 CACCGTCACTATAGTCCAGCTAA 59.369 47.826 1.26 0.00 32.72 3.09
261 262 3.631227 ACCGTCACTATAGTCCAGCTAAC 59.369 47.826 1.26 0.00 32.72 2.34
262 263 3.630769 CCGTCACTATAGTCCAGCTAACA 59.369 47.826 1.26 0.00 32.72 2.41
263 264 4.278669 CCGTCACTATAGTCCAGCTAACAT 59.721 45.833 1.26 0.00 32.72 2.71
264 265 5.215903 CGTCACTATAGTCCAGCTAACATG 58.784 45.833 1.26 0.00 32.72 3.21
265 266 5.008712 CGTCACTATAGTCCAGCTAACATGA 59.991 44.000 1.26 0.00 32.72 3.07
266 267 6.442952 GTCACTATAGTCCAGCTAACATGAG 58.557 44.000 1.26 0.00 32.72 2.90
267 268 6.263392 GTCACTATAGTCCAGCTAACATGAGA 59.737 42.308 1.26 0.00 32.72 3.27
268 269 6.263392 TCACTATAGTCCAGCTAACATGAGAC 59.737 42.308 1.26 0.00 32.72 3.36
269 270 6.039829 CACTATAGTCCAGCTAACATGAGACA 59.960 42.308 1.26 0.00 32.72 3.41
270 271 5.939764 ATAGTCCAGCTAACATGAGACAA 57.060 39.130 0.00 0.00 32.72 3.18
271 272 4.199432 AGTCCAGCTAACATGAGACAAG 57.801 45.455 0.00 0.00 0.00 3.16
272 273 2.675348 GTCCAGCTAACATGAGACAAGC 59.325 50.000 0.00 0.52 0.00 4.01
273 274 2.012673 CCAGCTAACATGAGACAAGCC 58.987 52.381 0.00 0.00 33.63 4.35
274 275 2.355513 CCAGCTAACATGAGACAAGCCT 60.356 50.000 0.00 0.00 33.63 4.58
275 276 3.341823 CAGCTAACATGAGACAAGCCTT 58.658 45.455 0.00 0.00 33.63 4.35
276 277 3.126514 CAGCTAACATGAGACAAGCCTTG 59.873 47.826 2.11 2.11 33.63 3.61
285 286 2.702847 ACAAGCCTTGTCCGTGAAC 58.297 52.632 3.74 0.00 40.56 3.18
286 287 1.157870 ACAAGCCTTGTCCGTGAACG 61.158 55.000 3.74 0.00 40.56 3.95
287 288 2.251642 AAGCCTTGTCCGTGAACGC 61.252 57.895 0.00 0.00 38.18 4.84
288 289 3.723348 GCCTTGTCCGTGAACGCC 61.723 66.667 0.00 0.00 38.18 5.68
289 290 3.047877 CCTTGTCCGTGAACGCCC 61.048 66.667 0.00 0.00 38.18 6.13
290 291 2.280524 CTTGTCCGTGAACGCCCA 60.281 61.111 0.00 0.00 38.18 5.36
291 292 1.671054 CTTGTCCGTGAACGCCCAT 60.671 57.895 0.00 0.00 38.18 4.00
292 293 1.228003 TTGTCCGTGAACGCCCATT 60.228 52.632 0.00 0.00 38.18 3.16
293 294 0.820074 TTGTCCGTGAACGCCCATTT 60.820 50.000 0.00 0.00 38.18 2.32
294 295 1.209127 GTCCGTGAACGCCCATTTG 59.791 57.895 0.00 0.00 38.18 2.32
295 296 1.969064 TCCGTGAACGCCCATTTGG 60.969 57.895 0.00 0.00 38.18 3.28
296 297 2.265182 CCGTGAACGCCCATTTGGT 61.265 57.895 0.00 0.00 38.18 3.67
297 298 1.209127 CGTGAACGCCCATTTGGTC 59.791 57.895 0.00 0.00 36.04 4.02
298 299 1.209127 GTGAACGCCCATTTGGTCG 59.791 57.895 0.00 0.00 38.88 4.79
299 300 1.071642 TGAACGCCCATTTGGTCGA 59.928 52.632 7.08 0.00 37.18 4.20
300 301 0.953471 TGAACGCCCATTTGGTCGAG 60.953 55.000 7.08 0.00 37.18 4.04
301 302 0.953960 GAACGCCCATTTGGTCGAGT 60.954 55.000 7.08 0.00 37.18 4.18
302 303 1.234615 AACGCCCATTTGGTCGAGTG 61.235 55.000 7.08 0.00 37.18 3.51
303 304 2.398554 CGCCCATTTGGTCGAGTGG 61.399 63.158 0.00 0.00 36.23 4.00
304 305 2.700773 GCCCATTTGGTCGAGTGGC 61.701 63.158 0.00 0.00 36.04 5.01
305 306 2.046285 CCCATTTGGTCGAGTGGCC 61.046 63.158 0.00 0.00 0.00 5.36
306 307 1.303236 CCATTTGGTCGAGTGGCCA 60.303 57.895 0.00 0.00 0.00 5.36
307 308 0.680921 CCATTTGGTCGAGTGGCCAT 60.681 55.000 9.72 0.00 34.37 4.40
308 309 0.452987 CATTTGGTCGAGTGGCCATG 59.547 55.000 9.72 1.76 34.37 3.66
309 310 1.315257 ATTTGGTCGAGTGGCCATGC 61.315 55.000 9.72 2.65 34.37 4.06
320 321 2.359850 GCCATGCCAGAACGACCA 60.360 61.111 0.00 0.00 0.00 4.02
321 322 1.971167 GCCATGCCAGAACGACCAA 60.971 57.895 0.00 0.00 0.00 3.67
322 323 1.875963 CCATGCCAGAACGACCAAC 59.124 57.895 0.00 0.00 0.00 3.77
323 324 0.606401 CCATGCCAGAACGACCAACT 60.606 55.000 0.00 0.00 0.00 3.16
324 325 0.798776 CATGCCAGAACGACCAACTC 59.201 55.000 0.00 0.00 0.00 3.01
332 333 3.474806 CGACCAACTCGCCATGAC 58.525 61.111 0.00 0.00 35.06 3.06
333 334 1.374125 CGACCAACTCGCCATGACA 60.374 57.895 0.00 0.00 35.06 3.58
334 335 1.626654 CGACCAACTCGCCATGACAC 61.627 60.000 0.00 0.00 35.06 3.67
335 336 1.626654 GACCAACTCGCCATGACACG 61.627 60.000 0.00 0.00 0.00 4.49
336 337 2.390599 CCAACTCGCCATGACACGG 61.391 63.158 0.00 0.00 0.00 4.94
337 338 2.047274 AACTCGCCATGACACGGG 60.047 61.111 0.00 0.00 35.39 5.28
338 339 3.605749 AACTCGCCATGACACGGGG 62.606 63.158 0.00 0.00 37.80 5.73
339 340 3.770040 CTCGCCATGACACGGGGA 61.770 66.667 7.14 7.14 42.68 4.81
340 341 4.077184 TCGCCATGACACGGGGAC 62.077 66.667 2.80 0.00 40.29 4.46
352 353 4.699522 GGGGACGGCGGCCATATC 62.700 72.222 35.76 16.45 0.00 1.63
353 354 3.626924 GGGACGGCGGCCATATCT 61.627 66.667 35.76 0.00 0.00 1.98
354 355 2.048127 GGACGGCGGCCATATCTC 60.048 66.667 30.45 3.75 0.00 2.75
355 356 2.734591 GACGGCGGCCATATCTCA 59.265 61.111 20.71 0.00 0.00 3.27
356 357 1.069090 GACGGCGGCCATATCTCAA 59.931 57.895 20.71 0.00 0.00 3.02
357 358 0.946221 GACGGCGGCCATATCTCAAG 60.946 60.000 20.71 1.24 0.00 3.02
358 359 1.367471 CGGCGGCCATATCTCAAGA 59.633 57.895 20.71 0.00 0.00 3.02
359 360 0.668706 CGGCGGCCATATCTCAAGAG 60.669 60.000 20.71 0.00 0.00 2.85
360 361 0.952984 GGCGGCCATATCTCAAGAGC 60.953 60.000 15.62 0.00 0.00 4.09
361 362 0.952984 GCGGCCATATCTCAAGAGCC 60.953 60.000 2.24 0.00 37.03 4.70
362 363 0.683973 CGGCCATATCTCAAGAGCCT 59.316 55.000 2.24 0.00 38.27 4.58
363 364 1.607509 CGGCCATATCTCAAGAGCCTG 60.608 57.143 2.24 0.00 38.27 4.85
364 365 1.521580 GCCATATCTCAAGAGCCTGC 58.478 55.000 0.00 0.00 0.00 4.85
365 366 1.072015 GCCATATCTCAAGAGCCTGCT 59.928 52.381 0.00 0.00 0.00 4.24
366 367 2.768698 CCATATCTCAAGAGCCTGCTG 58.231 52.381 0.00 0.00 0.00 4.41
367 368 2.104451 CCATATCTCAAGAGCCTGCTGT 59.896 50.000 0.00 0.00 0.00 4.40
368 369 3.391965 CATATCTCAAGAGCCTGCTGTC 58.608 50.000 0.00 0.00 0.00 3.51
369 370 0.540923 ATCTCAAGAGCCTGCTGTCC 59.459 55.000 0.00 0.00 0.00 4.02
370 371 0.833409 TCTCAAGAGCCTGCTGTCCA 60.833 55.000 0.00 0.00 0.00 4.02
371 372 0.391395 CTCAAGAGCCTGCTGTCCAG 60.391 60.000 0.00 0.00 41.41 3.86
381 382 2.664851 CTGTCCAGCGCAACGGAA 60.665 61.111 11.47 3.10 31.67 4.30
382 383 2.954753 CTGTCCAGCGCAACGGAAC 61.955 63.158 11.47 7.97 31.67 3.62
398 399 3.027974 GGAACGTCTAGAGTTGTTGCT 57.972 47.619 13.39 0.00 31.07 3.91
399 400 2.731976 GGAACGTCTAGAGTTGTTGCTG 59.268 50.000 13.39 0.00 31.07 4.41
400 401 3.381949 GAACGTCTAGAGTTGTTGCTGT 58.618 45.455 10.94 0.00 31.14 4.40
401 402 3.454371 ACGTCTAGAGTTGTTGCTGTT 57.546 42.857 0.00 0.00 0.00 3.16
402 403 4.579454 ACGTCTAGAGTTGTTGCTGTTA 57.421 40.909 0.00 0.00 0.00 2.41
403 404 5.135508 ACGTCTAGAGTTGTTGCTGTTAT 57.864 39.130 0.00 0.00 0.00 1.89
404 405 5.162075 ACGTCTAGAGTTGTTGCTGTTATC 58.838 41.667 0.00 0.00 0.00 1.75
405 406 4.263209 CGTCTAGAGTTGTTGCTGTTATCG 59.737 45.833 0.00 0.00 0.00 2.92
406 407 5.162075 GTCTAGAGTTGTTGCTGTTATCGT 58.838 41.667 0.00 0.00 0.00 3.73
407 408 5.286558 GTCTAGAGTTGTTGCTGTTATCGTC 59.713 44.000 0.00 0.00 0.00 4.20
408 409 3.990092 AGAGTTGTTGCTGTTATCGTCA 58.010 40.909 0.00 0.00 0.00 4.35
409 410 3.990469 AGAGTTGTTGCTGTTATCGTCAG 59.010 43.478 0.00 0.00 36.18 3.51
410 411 3.987868 GAGTTGTTGCTGTTATCGTCAGA 59.012 43.478 0.00 0.00 35.20 3.27
411 412 4.569943 AGTTGTTGCTGTTATCGTCAGAT 58.430 39.130 0.00 0.00 40.76 2.90
412 413 5.720202 AGTTGTTGCTGTTATCGTCAGATA 58.280 37.500 0.00 0.00 38.26 1.98
413 414 6.163476 AGTTGTTGCTGTTATCGTCAGATAA 58.837 36.000 0.00 0.00 44.51 1.75
425 426 6.910536 ATCGTCAGATAAAATCTTGACCAC 57.089 37.500 10.88 0.00 37.58 4.16
426 427 6.037786 TCGTCAGATAAAATCTTGACCACT 57.962 37.500 10.88 0.00 37.58 4.00
427 428 5.869344 TCGTCAGATAAAATCTTGACCACTG 59.131 40.000 10.88 0.00 37.58 3.66
428 429 5.446473 CGTCAGATAAAATCTTGACCACTGC 60.446 44.000 0.00 0.00 37.58 4.40
429 430 4.943705 TCAGATAAAATCTTGACCACTGCC 59.056 41.667 0.00 0.00 37.58 4.85
430 431 4.701651 CAGATAAAATCTTGACCACTGCCA 59.298 41.667 0.00 0.00 37.58 4.92
431 432 5.183713 CAGATAAAATCTTGACCACTGCCAA 59.816 40.000 0.00 0.00 37.58 4.52
432 433 3.733443 AAAATCTTGACCACTGCCAAC 57.267 42.857 0.00 0.00 0.00 3.77
433 434 1.620822 AATCTTGACCACTGCCAACC 58.379 50.000 0.00 0.00 0.00 3.77
434 435 0.478072 ATCTTGACCACTGCCAACCA 59.522 50.000 0.00 0.00 0.00 3.67
435 436 0.257328 TCTTGACCACTGCCAACCAA 59.743 50.000 0.00 0.00 0.00 3.67
436 437 0.670162 CTTGACCACTGCCAACCAAG 59.330 55.000 0.00 0.00 0.00 3.61
437 438 1.391157 TTGACCACTGCCAACCAAGC 61.391 55.000 0.00 0.00 0.00 4.01
438 439 1.529244 GACCACTGCCAACCAAGCT 60.529 57.895 0.00 0.00 0.00 3.74
439 440 1.799258 GACCACTGCCAACCAAGCTG 61.799 60.000 0.00 0.00 35.51 4.24
440 441 2.337532 CACTGCCAACCAAGCTGC 59.662 61.111 0.00 0.00 32.91 5.25
441 442 3.289834 ACTGCCAACCAAGCTGCG 61.290 61.111 0.00 0.00 32.91 5.18
442 443 3.289834 CTGCCAACCAAGCTGCGT 61.290 61.111 0.00 0.00 0.00 5.24
443 444 3.547249 CTGCCAACCAAGCTGCGTG 62.547 63.158 8.66 8.66 0.00 5.34
453 454 3.187414 GCTGCGTGCTCTCTCTGC 61.187 66.667 0.00 0.00 38.95 4.26
454 455 2.260743 CTGCGTGCTCTCTCTGCA 59.739 61.111 0.00 0.00 38.19 4.41
455 456 1.373873 CTGCGTGCTCTCTCTGCAA 60.374 57.895 0.00 0.00 42.41 4.08
456 457 1.352882 CTGCGTGCTCTCTCTGCAAG 61.353 60.000 0.00 0.00 42.41 4.01
457 458 3.472533 CGTGCTCTCTCTGCAAGC 58.527 61.111 0.21 0.21 42.41 4.01
458 459 2.442999 CGTGCTCTCTCTGCAAGCG 61.443 63.158 3.06 0.00 42.41 4.68
459 460 2.099431 GTGCTCTCTCTGCAAGCGG 61.099 63.158 3.06 0.00 42.41 5.52
460 461 3.194308 GCTCTCTCTGCAAGCGGC 61.194 66.667 0.00 0.00 45.13 6.53
461 462 2.511145 CTCTCTCTGCAAGCGGCC 60.511 66.667 0.00 0.00 43.89 6.13
462 463 4.087892 TCTCTCTGCAAGCGGCCC 62.088 66.667 0.00 0.00 43.89 5.80
468 469 3.918253 CTGCAAGCGGCCCCTGTTA 62.918 63.158 0.00 0.00 43.89 2.41
469 470 3.440415 GCAAGCGGCCCCTGTTAC 61.440 66.667 0.00 0.00 36.11 2.50
470 471 2.033448 CAAGCGGCCCCTGTTACA 59.967 61.111 0.00 0.00 0.00 2.41
471 472 1.602323 CAAGCGGCCCCTGTTACAA 60.602 57.895 0.00 0.00 0.00 2.41
472 473 1.303317 AAGCGGCCCCTGTTACAAG 60.303 57.895 0.00 0.00 0.00 3.16
473 474 2.750237 GCGGCCCCTGTTACAAGG 60.750 66.667 0.00 0.00 37.05 3.61
474 475 2.750237 CGGCCCCTGTTACAAGGC 60.750 66.667 15.33 15.33 44.99 4.35
475 476 2.763902 GGCCCCTGTTACAAGGCT 59.236 61.111 20.70 0.00 45.07 4.58
476 477 1.906105 CGGCCCCTGTTACAAGGCTA 61.906 60.000 20.70 0.00 45.07 3.93
477 478 0.107165 GGCCCCTGTTACAAGGCTAG 60.107 60.000 20.70 0.00 45.07 3.42
478 479 0.748367 GCCCCTGTTACAAGGCTAGC 60.748 60.000 16.10 6.04 42.34 3.42
479 480 0.618458 CCCCTGTTACAAGGCTAGCA 59.382 55.000 18.24 0.00 35.85 3.49
480 481 1.679032 CCCCTGTTACAAGGCTAGCAC 60.679 57.143 18.24 5.31 35.85 4.40
481 482 1.279271 CCCTGTTACAAGGCTAGCACT 59.721 52.381 18.24 8.50 35.85 4.40
482 483 2.500098 CCCTGTTACAAGGCTAGCACTA 59.500 50.000 18.24 0.00 35.85 2.74
483 484 3.522553 CCTGTTACAAGGCTAGCACTAC 58.477 50.000 18.24 6.93 0.00 2.73
484 485 3.056107 CCTGTTACAAGGCTAGCACTACA 60.056 47.826 18.24 10.77 0.00 2.74
485 486 3.921677 TGTTACAAGGCTAGCACTACAC 58.078 45.455 18.24 6.17 0.00 2.90
486 487 3.322541 TGTTACAAGGCTAGCACTACACA 59.677 43.478 18.24 8.76 0.00 3.72
487 488 4.020573 TGTTACAAGGCTAGCACTACACAT 60.021 41.667 18.24 0.00 0.00 3.21
488 489 3.703001 ACAAGGCTAGCACTACACATT 57.297 42.857 18.24 0.00 0.00 2.71
489 490 4.819105 ACAAGGCTAGCACTACACATTA 57.181 40.909 18.24 0.00 0.00 1.90
490 491 4.504858 ACAAGGCTAGCACTACACATTAC 58.495 43.478 18.24 0.00 0.00 1.89
491 492 3.821421 AGGCTAGCACTACACATTACC 57.179 47.619 18.24 0.00 0.00 2.85
492 493 3.104512 AGGCTAGCACTACACATTACCA 58.895 45.455 18.24 0.00 0.00 3.25
493 494 3.118738 AGGCTAGCACTACACATTACCAC 60.119 47.826 18.24 0.00 0.00 4.16
494 495 2.858344 GCTAGCACTACACATTACCACG 59.142 50.000 10.63 0.00 0.00 4.94
495 496 3.428452 GCTAGCACTACACATTACCACGA 60.428 47.826 10.63 0.00 0.00 4.35
496 497 2.955614 AGCACTACACATTACCACGAC 58.044 47.619 0.00 0.00 0.00 4.34
497 498 2.297880 AGCACTACACATTACCACGACA 59.702 45.455 0.00 0.00 0.00 4.35
498 499 3.056107 AGCACTACACATTACCACGACAT 60.056 43.478 0.00 0.00 0.00 3.06
499 500 3.682858 GCACTACACATTACCACGACATT 59.317 43.478 0.00 0.00 0.00 2.71
500 501 4.865925 GCACTACACATTACCACGACATTA 59.134 41.667 0.00 0.00 0.00 1.90
501 502 5.522460 GCACTACACATTACCACGACATTAT 59.478 40.000 0.00 0.00 0.00 1.28
502 503 6.292168 GCACTACACATTACCACGACATTATC 60.292 42.308 0.00 0.00 0.00 1.75
512 513 0.937304 CGACATTATCGTTGGCCAGG 59.063 55.000 5.11 1.87 46.25 4.45
513 514 1.472552 CGACATTATCGTTGGCCAGGA 60.473 52.381 5.11 8.45 46.25 3.86
514 515 2.213499 GACATTATCGTTGGCCAGGAG 58.787 52.381 5.11 1.11 0.00 3.69
515 516 0.947244 CATTATCGTTGGCCAGGAGC 59.053 55.000 5.11 0.00 42.60 4.70
516 517 0.532862 ATTATCGTTGGCCAGGAGCG 60.533 55.000 5.11 10.06 45.17 5.03
517 518 1.609635 TTATCGTTGGCCAGGAGCGA 61.610 55.000 20.23 20.23 45.17 4.93
518 519 2.292794 TATCGTTGGCCAGGAGCGAC 62.293 60.000 20.32 9.01 45.17 5.19
519 520 4.680237 CGTTGGCCAGGAGCGACA 62.680 66.667 5.11 0.00 45.17 4.35
520 521 2.743928 GTTGGCCAGGAGCGACAG 60.744 66.667 5.11 0.00 45.17 3.51
521 522 2.922503 TTGGCCAGGAGCGACAGA 60.923 61.111 5.11 0.00 45.17 3.41
522 523 2.947532 TTGGCCAGGAGCGACAGAG 61.948 63.158 5.11 0.00 45.17 3.35
523 524 3.386237 GGCCAGGAGCGACAGAGT 61.386 66.667 0.00 0.00 45.17 3.24
524 525 2.125753 GCCAGGAGCGACAGAGTG 60.126 66.667 0.00 0.00 0.00 3.51
525 526 2.575993 CCAGGAGCGACAGAGTGG 59.424 66.667 0.00 0.00 0.00 4.00
526 527 2.125753 CAGGAGCGACAGAGTGGC 60.126 66.667 0.00 0.00 37.53 5.01
527 528 2.601666 AGGAGCGACAGAGTGGCA 60.602 61.111 6.90 0.00 39.66 4.92
528 529 2.433318 GGAGCGACAGAGTGGCAC 60.433 66.667 10.29 10.29 39.66 5.01
529 530 2.653702 GAGCGACAGAGTGGCACT 59.346 61.111 22.26 22.26 39.66 4.40
530 531 1.595993 GGAGCGACAGAGTGGCACTA 61.596 60.000 22.11 0.00 39.66 2.74
531 532 0.456995 GAGCGACAGAGTGGCACTAC 60.457 60.000 22.11 14.00 39.66 2.73
532 533 0.896019 AGCGACAGAGTGGCACTACT 60.896 55.000 22.11 16.05 39.66 2.57
533 534 0.038159 GCGACAGAGTGGCACTACTT 60.038 55.000 22.11 7.12 37.24 2.24
534 535 1.702886 CGACAGAGTGGCACTACTTG 58.297 55.000 22.11 20.13 0.00 3.16
543 544 2.162716 GCACTACTTGCCGTCTTGG 58.837 57.895 0.00 0.00 46.63 3.61
544 545 0.320421 GCACTACTTGCCGTCTTGGA 60.320 55.000 0.00 0.00 46.63 3.53
545 546 1.429463 CACTACTTGCCGTCTTGGAC 58.571 55.000 0.00 0.00 42.00 4.02
546 547 1.045407 ACTACTTGCCGTCTTGGACA 58.955 50.000 0.00 0.00 42.00 4.02
547 548 1.270147 ACTACTTGCCGTCTTGGACAC 60.270 52.381 0.00 0.00 42.00 3.67
548 549 0.034337 TACTTGCCGTCTTGGACACC 59.966 55.000 0.00 0.00 42.00 4.16
549 550 1.966451 CTTGCCGTCTTGGACACCC 60.966 63.158 0.00 0.00 42.00 4.61
561 562 1.239296 GGACACCCGCTTAAACCACC 61.239 60.000 0.00 0.00 0.00 4.61
567 568 0.879090 CCGCTTAAACCACCTCCAAC 59.121 55.000 0.00 0.00 0.00 3.77
568 569 1.600023 CGCTTAAACCACCTCCAACA 58.400 50.000 0.00 0.00 0.00 3.33
569 570 1.950909 CGCTTAAACCACCTCCAACAA 59.049 47.619 0.00 0.00 0.00 2.83
570 571 2.556622 CGCTTAAACCACCTCCAACAAT 59.443 45.455 0.00 0.00 0.00 2.71
636 639 1.965219 GTGCTACACGGACTGGACT 59.035 57.895 0.00 0.00 0.00 3.85
637 640 0.388649 GTGCTACACGGACTGGACTG 60.389 60.000 0.00 0.00 0.00 3.51
638 641 0.538746 TGCTACACGGACTGGACTGA 60.539 55.000 0.00 0.00 0.00 3.41
640 643 1.669211 GCTACACGGACTGGACTGAAC 60.669 57.143 0.00 0.00 0.00 3.18
641 644 0.963962 TACACGGACTGGACTGAACC 59.036 55.000 0.00 0.00 0.00 3.62
695 702 2.098770 GTGTCTAACCTGTAGCCTACGG 59.901 54.545 3.57 3.57 34.81 4.02
698 705 4.140536 GTCTAACCTGTAGCCTACGGTAT 58.859 47.826 15.46 10.20 35.56 2.73
719 744 7.062722 CGGTATAGCAATGTACATGATCTTGAG 59.937 40.741 9.63 0.00 0.00 3.02
720 745 7.875041 GGTATAGCAATGTACATGATCTTGAGT 59.125 37.037 9.63 0.00 0.00 3.41
721 746 9.265901 GTATAGCAATGTACATGATCTTGAGTT 57.734 33.333 9.63 2.25 0.00 3.01
724 749 8.151141 AGCAATGTACATGATCTTGAGTTATG 57.849 34.615 9.63 0.05 0.00 1.90
725 750 7.989170 AGCAATGTACATGATCTTGAGTTATGA 59.011 33.333 9.63 0.00 0.00 2.15
739 2637 6.978343 TGAGTTATGAAAATGTTAGTCCGG 57.022 37.500 0.00 0.00 0.00 5.14
741 2639 6.592607 TGAGTTATGAAAATGTTAGTCCGGTC 59.407 38.462 0.00 0.00 0.00 4.79
743 2641 2.070783 TGAAAATGTTAGTCCGGTCGC 58.929 47.619 0.00 0.00 0.00 5.19
752 2650 0.736325 AGTCCGGTCGCATTTTCTCG 60.736 55.000 0.00 0.00 0.00 4.04
756 2654 1.468565 CCGGTCGCATTTTCTCGTCTA 60.469 52.381 0.00 0.00 0.00 2.59
757 2655 1.846782 CGGTCGCATTTTCTCGTCTAG 59.153 52.381 0.00 0.00 0.00 2.43
760 2658 3.499048 GTCGCATTTTCTCGTCTAGACA 58.501 45.455 22.37 8.93 32.51 3.41
770 2668 1.511768 GTCTAGACAGTGACCGGGC 59.488 63.158 18.20 1.57 0.00 6.13
803 2701 2.623535 CGTTTGTTGGGACGGATATGA 58.376 47.619 0.00 0.00 35.74 2.15
804 2702 3.202906 CGTTTGTTGGGACGGATATGAT 58.797 45.455 0.00 0.00 35.74 2.45
806 2704 2.928801 TGTTGGGACGGATATGATGG 57.071 50.000 0.00 0.00 0.00 3.51
807 2705 2.403561 TGTTGGGACGGATATGATGGA 58.596 47.619 0.00 0.00 0.00 3.41
849 2790 0.835941 CCCTCTCCAACCCTCTCATG 59.164 60.000 0.00 0.00 0.00 3.07
856 2797 1.404717 CCAACCCTCTCATGAGTCGTG 60.405 57.143 21.92 5.96 38.61 4.35
868 2810 0.040246 GAGTCGTGACCTATAGCGGC 60.040 60.000 0.00 0.00 0.00 6.53
869 2811 0.465824 AGTCGTGACCTATAGCGGCT 60.466 55.000 7.98 7.98 34.29 5.52
870 2812 0.384669 GTCGTGACCTATAGCGGCTT 59.615 55.000 8.26 0.00 0.00 4.35
871 2813 0.666913 TCGTGACCTATAGCGGCTTC 59.333 55.000 8.26 0.00 0.00 3.86
887 4346 1.406539 GCTTCGCAATGGATTCATGGT 59.593 47.619 0.00 0.00 33.18 3.55
923 4383 2.046411 CTGCGGGCCACACATGTA 60.046 61.111 4.39 0.00 0.00 2.29
966 4434 1.019673 GCTGTACCACTGGATGCATG 58.980 55.000 2.46 0.00 0.00 4.06
967 4435 1.407299 GCTGTACCACTGGATGCATGA 60.407 52.381 2.46 0.00 0.00 3.07
968 4436 2.558378 CTGTACCACTGGATGCATGAG 58.442 52.381 2.46 1.83 0.00 2.90
969 4437 2.169144 CTGTACCACTGGATGCATGAGA 59.831 50.000 2.46 0.00 0.00 3.27
970 4438 2.571202 TGTACCACTGGATGCATGAGAA 59.429 45.455 2.46 0.00 0.00 2.87
977 4445 3.773667 ACTGGATGCATGAGAAGAGAAGA 59.226 43.478 2.46 0.00 0.00 2.87
1024 4495 2.185350 CCACCAGAGCTGCCTACG 59.815 66.667 0.00 0.00 0.00 3.51
1028 4499 0.037232 ACCAGAGCTGCCTACGTTTC 60.037 55.000 0.00 0.00 0.00 2.78
1048 4522 1.474677 CCAGCACATCCATCTCACTCC 60.475 57.143 0.00 0.00 0.00 3.85
1049 4523 1.485480 CAGCACATCCATCTCACTCCT 59.515 52.381 0.00 0.00 0.00 3.69
1050 4524 2.093075 CAGCACATCCATCTCACTCCTT 60.093 50.000 0.00 0.00 0.00 3.36
1111 4600 1.153086 CATGGCACCAGCTACCTCC 60.153 63.158 0.00 0.00 41.70 4.30
1118 4607 1.003646 ACCAGCTACCTCCAGAGAGA 58.996 55.000 0.00 0.00 43.39 3.10
1147 4648 3.350909 TTCATCGAGGACGGCACCG 62.351 63.158 7.71 7.71 46.03 4.94
1318 4837 4.760047 CGGTGAACGGCAGAGGGG 62.760 72.222 0.00 0.00 39.42 4.79
1497 5016 0.318699 CAAGCTTCGACTCACCGACA 60.319 55.000 0.00 0.00 38.39 4.35
2052 9347 0.179020 CAGCCAACTGGGACAACAGA 60.179 55.000 0.00 0.00 40.97 3.41
2109 9482 4.836125 TTTCTCATTCAAAAAGCTCGCT 57.164 36.364 0.00 0.00 0.00 4.93
2302 9675 3.742369 TCCCAACGACGTTTATCTGAAAC 59.258 43.478 11.24 0.00 0.00 2.78
2328 9701 2.357517 AGGTTGCTGTCTTCGCCG 60.358 61.111 0.00 0.00 0.00 6.46
2681 10054 1.594862 CGATGATGAAAGGAAGGTCGC 59.405 52.381 0.00 0.00 0.00 5.19
3194 10571 6.019779 AGTAGTGCTTCTTGAGTTAGTGAG 57.980 41.667 0.00 0.00 0.00 3.51
3303 10680 1.998315 CTTGCAGGTGAAGATCAGTCG 59.002 52.381 0.00 0.00 0.00 4.18
3623 11040 9.765795 ACTATGTAGTAGGAGTATTTCATTTGC 57.234 33.333 0.00 0.00 34.13 3.68
3691 11110 4.520492 TCCAGCAGTTTGAAGAAGAAATCC 59.480 41.667 0.00 0.00 0.00 3.01
4136 11565 4.465512 GCGCACGTCCCAATGCAG 62.466 66.667 0.30 0.00 42.17 4.41
4337 11766 3.840594 TACCCGTTCCCATCCGCG 61.841 66.667 0.00 0.00 0.00 6.46
4394 11823 1.691196 CCAGCTCCTGGTAGAGAGAG 58.309 60.000 3.09 0.00 45.82 3.20
4414 11843 1.381056 AGAGCCTGAGCACCTCGAT 60.381 57.895 0.00 0.00 43.56 3.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 6.052360 GGGACCAAAGTTTAATTTTGCAGAA 58.948 36.000 7.31 0.00 34.88 3.02
66 67 2.968574 TCTAGGATTCTTGCTAGGCCAG 59.031 50.000 5.01 0.97 42.47 4.85
69 70 3.244353 TGCATCTAGGATTCTTGCTAGGC 60.244 47.826 0.00 0.40 42.47 3.93
72 73 7.776969 AGAAAATTGCATCTAGGATTCTTGCTA 59.223 33.333 0.00 0.00 34.47 3.49
74 75 6.696148 CAGAAAATTGCATCTAGGATTCTTGC 59.304 38.462 0.00 0.00 0.00 4.01
75 76 7.147949 ACCAGAAAATTGCATCTAGGATTCTTG 60.148 37.037 9.23 0.00 0.00 3.02
76 77 6.894103 ACCAGAAAATTGCATCTAGGATTCTT 59.106 34.615 9.23 0.00 0.00 2.52
77 78 6.430007 ACCAGAAAATTGCATCTAGGATTCT 58.570 36.000 9.23 0.00 0.00 2.40
78 79 6.705863 ACCAGAAAATTGCATCTAGGATTC 57.294 37.500 9.23 0.00 0.00 2.52
79 80 7.325694 CAAACCAGAAAATTGCATCTAGGATT 58.674 34.615 9.23 3.47 0.00 3.01
80 81 6.127253 CCAAACCAGAAAATTGCATCTAGGAT 60.127 38.462 9.23 0.00 0.00 3.24
81 82 5.185635 CCAAACCAGAAAATTGCATCTAGGA 59.814 40.000 9.23 0.00 0.00 2.94
82 83 5.047092 ACCAAACCAGAAAATTGCATCTAGG 60.047 40.000 0.00 0.00 0.00 3.02
83 84 6.029346 ACCAAACCAGAAAATTGCATCTAG 57.971 37.500 0.00 0.00 0.00 2.43
84 85 5.047377 GGACCAAACCAGAAAATTGCATCTA 60.047 40.000 0.00 0.00 0.00 1.98
85 86 4.262592 GGACCAAACCAGAAAATTGCATCT 60.263 41.667 0.00 0.00 0.00 2.90
86 87 3.996363 GGACCAAACCAGAAAATTGCATC 59.004 43.478 0.00 0.00 0.00 3.91
87 88 3.647590 AGGACCAAACCAGAAAATTGCAT 59.352 39.130 0.00 0.00 0.00 3.96
88 89 3.037549 AGGACCAAACCAGAAAATTGCA 58.962 40.909 0.00 0.00 0.00 4.08
89 90 3.653344 GAGGACCAAACCAGAAAATTGC 58.347 45.455 0.00 0.00 0.00 3.56
90 91 3.857010 GCGAGGACCAAACCAGAAAATTG 60.857 47.826 0.00 0.00 0.00 2.32
91 92 2.296190 GCGAGGACCAAACCAGAAAATT 59.704 45.455 0.00 0.00 0.00 1.82
92 93 1.886542 GCGAGGACCAAACCAGAAAAT 59.113 47.619 0.00 0.00 0.00 1.82
93 94 1.133915 AGCGAGGACCAAACCAGAAAA 60.134 47.619 0.00 0.00 0.00 2.29
94 95 0.472471 AGCGAGGACCAAACCAGAAA 59.528 50.000 0.00 0.00 0.00 2.52
95 96 0.034896 GAGCGAGGACCAAACCAGAA 59.965 55.000 0.00 0.00 0.00 3.02
96 97 0.832135 AGAGCGAGGACCAAACCAGA 60.832 55.000 0.00 0.00 0.00 3.86
97 98 0.895530 TAGAGCGAGGACCAAACCAG 59.104 55.000 0.00 0.00 0.00 4.00
98 99 1.480954 GATAGAGCGAGGACCAAACCA 59.519 52.381 0.00 0.00 0.00 3.67
99 100 1.757699 AGATAGAGCGAGGACCAAACC 59.242 52.381 0.00 0.00 0.00 3.27
100 101 3.528597 AAGATAGAGCGAGGACCAAAC 57.471 47.619 0.00 0.00 0.00 2.93
101 102 4.441634 GCTTAAGATAGAGCGAGGACCAAA 60.442 45.833 6.67 0.00 0.00 3.28
102 103 3.068307 GCTTAAGATAGAGCGAGGACCAA 59.932 47.826 6.67 0.00 0.00 3.67
103 104 2.623889 GCTTAAGATAGAGCGAGGACCA 59.376 50.000 6.67 0.00 0.00 4.02
104 105 3.291809 GCTTAAGATAGAGCGAGGACC 57.708 52.381 6.67 0.00 0.00 4.46
111 112 0.781191 CGCTGCGCTTAAGATAGAGC 59.219 55.000 9.88 4.54 40.77 4.09
112 113 2.407521 TCGCTGCGCTTAAGATAGAG 57.592 50.000 18.65 2.85 0.00 2.43
113 114 2.863401 TTCGCTGCGCTTAAGATAGA 57.137 45.000 18.65 0.00 0.00 1.98
114 115 3.052745 TGATTCGCTGCGCTTAAGATAG 58.947 45.455 18.65 1.81 0.00 2.08
115 116 3.092334 TGATTCGCTGCGCTTAAGATA 57.908 42.857 18.65 0.00 0.00 1.98
116 117 1.939974 TGATTCGCTGCGCTTAAGAT 58.060 45.000 18.65 4.05 0.00 2.40
117 118 1.660607 CTTGATTCGCTGCGCTTAAGA 59.339 47.619 18.65 0.00 0.00 2.10
118 119 1.660607 TCTTGATTCGCTGCGCTTAAG 59.339 47.619 18.65 17.49 0.00 1.85
119 120 1.720805 TCTTGATTCGCTGCGCTTAA 58.279 45.000 18.65 7.18 0.00 1.85
120 121 1.939974 ATCTTGATTCGCTGCGCTTA 58.060 45.000 18.65 5.46 0.00 3.09
121 122 1.089920 AATCTTGATTCGCTGCGCTT 58.910 45.000 18.65 6.72 0.00 4.68
122 123 1.594862 GTAATCTTGATTCGCTGCGCT 59.405 47.619 18.65 6.93 0.00 5.92
123 124 1.333258 GGTAATCTTGATTCGCTGCGC 60.333 52.381 18.65 0.00 0.00 6.09
124 125 1.933181 TGGTAATCTTGATTCGCTGCG 59.067 47.619 17.25 17.25 0.00 5.18
125 126 2.289002 CCTGGTAATCTTGATTCGCTGC 59.711 50.000 0.00 0.00 0.00 5.25
126 127 3.797039 TCCTGGTAATCTTGATTCGCTG 58.203 45.455 0.00 0.00 0.00 5.18
127 128 4.487714 TTCCTGGTAATCTTGATTCGCT 57.512 40.909 0.00 0.00 0.00 4.93
128 129 5.296780 TCAATTCCTGGTAATCTTGATTCGC 59.703 40.000 0.00 0.00 0.00 4.70
129 130 6.925610 TCAATTCCTGGTAATCTTGATTCG 57.074 37.500 0.00 0.00 0.00 3.34
130 131 7.148239 ACGTTCAATTCCTGGTAATCTTGATTC 60.148 37.037 0.00 0.00 0.00 2.52
131 132 6.659242 ACGTTCAATTCCTGGTAATCTTGATT 59.341 34.615 1.35 1.35 0.00 2.57
132 133 6.180472 ACGTTCAATTCCTGGTAATCTTGAT 58.820 36.000 0.00 0.00 0.00 2.57
133 134 5.556915 ACGTTCAATTCCTGGTAATCTTGA 58.443 37.500 0.00 0.00 0.00 3.02
134 135 5.880054 ACGTTCAATTCCTGGTAATCTTG 57.120 39.130 0.00 0.00 0.00 3.02
135 136 5.585047 GCTACGTTCAATTCCTGGTAATCTT 59.415 40.000 0.00 0.00 0.00 2.40
136 137 5.116882 GCTACGTTCAATTCCTGGTAATCT 58.883 41.667 0.00 0.00 0.00 2.40
137 138 4.025979 CGCTACGTTCAATTCCTGGTAATC 60.026 45.833 0.00 0.00 0.00 1.75
138 139 3.869246 CGCTACGTTCAATTCCTGGTAAT 59.131 43.478 0.00 0.00 0.00 1.89
139 140 3.255725 CGCTACGTTCAATTCCTGGTAA 58.744 45.455 0.00 0.00 0.00 2.85
140 141 2.231964 ACGCTACGTTCAATTCCTGGTA 59.768 45.455 0.00 0.00 36.35 3.25
141 142 1.001633 ACGCTACGTTCAATTCCTGGT 59.998 47.619 0.00 0.00 36.35 4.00
142 143 1.722011 ACGCTACGTTCAATTCCTGG 58.278 50.000 0.00 0.00 36.35 4.45
153 154 0.039256 TGCTTTACCGAACGCTACGT 60.039 50.000 0.00 0.00 43.97 3.57
154 155 0.638746 CTGCTTTACCGAACGCTACG 59.361 55.000 0.00 0.00 0.00 3.51
155 156 0.369248 GCTGCTTTACCGAACGCTAC 59.631 55.000 0.00 0.00 0.00 3.58
156 157 0.738412 GGCTGCTTTACCGAACGCTA 60.738 55.000 0.00 0.00 0.00 4.26
157 158 2.033194 GGCTGCTTTACCGAACGCT 61.033 57.895 0.00 0.00 0.00 5.07
158 159 2.322081 TGGCTGCTTTACCGAACGC 61.322 57.895 0.00 0.00 0.00 4.84
159 160 1.495951 GTGGCTGCTTTACCGAACG 59.504 57.895 0.00 0.00 0.00 3.95
160 161 1.873863 GGTGGCTGCTTTACCGAAC 59.126 57.895 0.00 0.00 0.00 3.95
161 162 4.390048 GGTGGCTGCTTTACCGAA 57.610 55.556 0.00 0.00 0.00 4.30
164 165 3.440415 GCCGGTGGCTGCTTTACC 61.440 66.667 1.90 5.46 46.69 2.85
174 175 3.214123 CCATGCTCATGCCGGTGG 61.214 66.667 1.90 0.00 37.49 4.61
175 176 1.105167 ATTCCATGCTCATGCCGGTG 61.105 55.000 1.90 0.00 37.49 4.94
176 177 0.396139 AATTCCATGCTCATGCCGGT 60.396 50.000 1.90 0.00 37.49 5.28
177 178 0.748450 AAATTCCATGCTCATGCCGG 59.252 50.000 0.00 0.00 37.49 6.13
178 179 2.358582 TGTAAATTCCATGCTCATGCCG 59.641 45.455 4.40 0.00 37.49 5.69
179 180 4.098349 TCTTGTAAATTCCATGCTCATGCC 59.902 41.667 4.40 0.00 37.49 4.40
180 181 5.252969 TCTTGTAAATTCCATGCTCATGC 57.747 39.130 4.40 0.00 37.49 4.06
181 182 5.279384 GCTCTTGTAAATTCCATGCTCATG 58.721 41.667 2.97 2.97 38.51 3.07
182 183 4.340381 GGCTCTTGTAAATTCCATGCTCAT 59.660 41.667 0.00 0.00 0.00 2.90
183 184 3.696051 GGCTCTTGTAAATTCCATGCTCA 59.304 43.478 0.00 0.00 0.00 4.26
184 185 3.696051 TGGCTCTTGTAAATTCCATGCTC 59.304 43.478 0.00 0.00 0.00 4.26
185 186 3.700538 TGGCTCTTGTAAATTCCATGCT 58.299 40.909 0.00 0.00 0.00 3.79
186 187 4.660789 ATGGCTCTTGTAAATTCCATGC 57.339 40.909 0.00 0.00 31.07 4.06
187 188 5.594926 GGAATGGCTCTTGTAAATTCCATG 58.405 41.667 7.66 0.00 43.77 3.66
188 189 5.859205 GGAATGGCTCTTGTAAATTCCAT 57.141 39.130 7.66 0.00 43.77 3.41
190 191 4.706962 ACTGGAATGGCTCTTGTAAATTCC 59.293 41.667 5.90 5.90 44.32 3.01
191 192 5.644644 CACTGGAATGGCTCTTGTAAATTC 58.355 41.667 0.00 0.00 0.00 2.17
192 193 4.082026 GCACTGGAATGGCTCTTGTAAATT 60.082 41.667 0.00 0.00 0.00 1.82
193 194 3.445096 GCACTGGAATGGCTCTTGTAAAT 59.555 43.478 0.00 0.00 0.00 1.40
194 195 2.819608 GCACTGGAATGGCTCTTGTAAA 59.180 45.455 0.00 0.00 0.00 2.01
195 196 2.436417 GCACTGGAATGGCTCTTGTAA 58.564 47.619 0.00 0.00 0.00 2.41
196 197 1.340017 GGCACTGGAATGGCTCTTGTA 60.340 52.381 0.00 0.00 41.78 2.41
197 198 0.610232 GGCACTGGAATGGCTCTTGT 60.610 55.000 0.00 0.00 41.78 3.16
198 199 2.187073 GGCACTGGAATGGCTCTTG 58.813 57.895 0.00 0.00 41.78 3.02
199 200 4.751431 GGCACTGGAATGGCTCTT 57.249 55.556 0.00 0.00 41.78 2.85
203 204 0.895100 TGTTGAGGCACTGGAATGGC 60.895 55.000 0.00 0.00 41.55 4.40
204 205 1.542915 CTTGTTGAGGCACTGGAATGG 59.457 52.381 0.00 0.00 41.55 3.16
205 206 1.068055 GCTTGTTGAGGCACTGGAATG 60.068 52.381 0.00 0.00 41.55 2.67
206 207 1.251251 GCTTGTTGAGGCACTGGAAT 58.749 50.000 0.00 0.00 41.55 3.01
207 208 0.106769 TGCTTGTTGAGGCACTGGAA 60.107 50.000 0.00 0.00 41.55 3.53
208 209 0.535780 CTGCTTGTTGAGGCACTGGA 60.536 55.000 0.00 0.00 41.55 3.86
209 210 0.535780 TCTGCTTGTTGAGGCACTGG 60.536 55.000 0.00 0.00 41.55 4.00
210 211 1.531423 ATCTGCTTGTTGAGGCACTG 58.469 50.000 0.00 0.00 41.55 3.66
212 213 3.539604 AGATATCTGCTTGTTGAGGCAC 58.460 45.455 3.89 0.00 34.57 5.01
213 214 3.432749 GGAGATATCTGCTTGTTGAGGCA 60.433 47.826 16.38 0.00 36.94 4.75
214 215 3.137533 GGAGATATCTGCTTGTTGAGGC 58.862 50.000 16.38 0.00 0.00 4.70
215 216 4.412796 TGGAGATATCTGCTTGTTGAGG 57.587 45.455 22.88 0.00 35.18 3.86
216 217 5.466058 GTGATGGAGATATCTGCTTGTTGAG 59.534 44.000 22.88 0.00 35.18 3.02
217 218 5.363101 GTGATGGAGATATCTGCTTGTTGA 58.637 41.667 22.88 4.17 35.18 3.18
218 219 4.514441 GGTGATGGAGATATCTGCTTGTTG 59.486 45.833 22.88 0.00 35.18 3.33
219 220 4.712476 GGTGATGGAGATATCTGCTTGTT 58.288 43.478 22.88 7.37 35.18 2.83
220 221 3.244009 CGGTGATGGAGATATCTGCTTGT 60.244 47.826 22.88 10.60 35.18 3.16
221 222 3.244009 ACGGTGATGGAGATATCTGCTTG 60.244 47.826 22.88 9.07 35.18 4.01
222 223 2.968574 ACGGTGATGGAGATATCTGCTT 59.031 45.455 22.88 17.44 35.18 3.91
223 224 2.560542 GACGGTGATGGAGATATCTGCT 59.439 50.000 22.88 10.20 35.18 4.24
224 225 2.297315 TGACGGTGATGGAGATATCTGC 59.703 50.000 16.76 16.76 34.66 4.26
225 226 3.571828 AGTGACGGTGATGGAGATATCTG 59.428 47.826 10.74 0.00 0.00 2.90
226 227 3.838565 AGTGACGGTGATGGAGATATCT 58.161 45.455 4.47 4.47 0.00 1.98
227 228 5.906113 ATAGTGACGGTGATGGAGATATC 57.094 43.478 0.00 0.00 0.00 1.63
228 229 6.486056 ACTATAGTGACGGTGATGGAGATAT 58.514 40.000 4.10 0.00 0.00 1.63
229 230 5.877491 ACTATAGTGACGGTGATGGAGATA 58.123 41.667 4.10 0.00 0.00 1.98
230 231 4.730966 ACTATAGTGACGGTGATGGAGAT 58.269 43.478 4.10 0.00 0.00 2.75
231 232 4.135306 GACTATAGTGACGGTGATGGAGA 58.865 47.826 10.90 0.00 0.00 3.71
232 233 3.253677 GGACTATAGTGACGGTGATGGAG 59.746 52.174 10.90 0.00 0.00 3.86
233 234 3.220110 GGACTATAGTGACGGTGATGGA 58.780 50.000 10.90 0.00 0.00 3.41
234 235 2.956333 TGGACTATAGTGACGGTGATGG 59.044 50.000 10.90 0.00 0.00 3.51
235 236 3.551046 GCTGGACTATAGTGACGGTGATG 60.551 52.174 10.90 0.00 0.00 3.07
236 237 2.623889 GCTGGACTATAGTGACGGTGAT 59.376 50.000 10.90 0.00 0.00 3.06
237 238 2.022195 GCTGGACTATAGTGACGGTGA 58.978 52.381 10.90 0.00 0.00 4.02
238 239 2.025155 AGCTGGACTATAGTGACGGTG 58.975 52.381 10.90 0.00 0.00 4.94
239 240 2.438800 AGCTGGACTATAGTGACGGT 57.561 50.000 10.90 0.59 0.00 4.83
240 241 3.630769 TGTTAGCTGGACTATAGTGACGG 59.369 47.826 10.90 9.17 0.00 4.79
241 242 4.895224 TGTTAGCTGGACTATAGTGACG 57.105 45.455 10.90 0.00 0.00 4.35
242 243 6.263392 TCTCATGTTAGCTGGACTATAGTGAC 59.737 42.308 10.90 3.65 0.00 3.67
243 244 6.263392 GTCTCATGTTAGCTGGACTATAGTGA 59.737 42.308 10.90 0.00 0.00 3.41
244 245 6.039829 TGTCTCATGTTAGCTGGACTATAGTG 59.960 42.308 10.90 0.00 0.00 2.74
245 246 6.129874 TGTCTCATGTTAGCTGGACTATAGT 58.870 40.000 4.68 4.68 0.00 2.12
246 247 6.641169 TGTCTCATGTTAGCTGGACTATAG 57.359 41.667 0.00 0.00 0.00 1.31
247 248 6.461648 GCTTGTCTCATGTTAGCTGGACTATA 60.462 42.308 0.00 0.00 0.00 1.31
248 249 5.683509 GCTTGTCTCATGTTAGCTGGACTAT 60.684 44.000 0.00 0.00 0.00 2.12
249 250 4.382040 GCTTGTCTCATGTTAGCTGGACTA 60.382 45.833 0.00 0.00 0.00 2.59
250 251 3.618507 GCTTGTCTCATGTTAGCTGGACT 60.619 47.826 0.00 0.00 0.00 3.85
251 252 2.675348 GCTTGTCTCATGTTAGCTGGAC 59.325 50.000 0.00 0.00 0.00 4.02
252 253 2.355108 GGCTTGTCTCATGTTAGCTGGA 60.355 50.000 0.00 0.00 32.58 3.86
253 254 2.012673 GGCTTGTCTCATGTTAGCTGG 58.987 52.381 0.00 0.00 32.58 4.85
254 255 2.983229 AGGCTTGTCTCATGTTAGCTG 58.017 47.619 0.00 0.00 32.58 4.24
255 256 3.244700 ACAAGGCTTGTCTCATGTTAGCT 60.245 43.478 26.54 0.00 40.56 3.32
256 257 3.077359 ACAAGGCTTGTCTCATGTTAGC 58.923 45.455 26.54 0.00 40.56 3.09
268 269 1.569493 CGTTCACGGACAAGGCTTG 59.431 57.895 25.06 25.06 35.37 4.01
269 270 2.251642 GCGTTCACGGACAAGGCTT 61.252 57.895 0.00 0.00 40.23 4.35
270 271 2.665185 GCGTTCACGGACAAGGCT 60.665 61.111 0.81 0.00 40.23 4.58
271 272 3.723348 GGCGTTCACGGACAAGGC 61.723 66.667 0.81 0.00 40.23 4.35
272 273 3.047877 GGGCGTTCACGGACAAGG 61.048 66.667 0.81 0.00 40.23 3.61
273 274 1.234615 AATGGGCGTTCACGGACAAG 61.235 55.000 0.81 0.00 40.23 3.16
274 275 0.820074 AAATGGGCGTTCACGGACAA 60.820 50.000 0.81 0.00 40.23 3.18
275 276 1.228003 AAATGGGCGTTCACGGACA 60.228 52.632 0.81 0.00 40.23 4.02
276 277 1.209127 CAAATGGGCGTTCACGGAC 59.791 57.895 0.81 0.00 40.23 4.79
277 278 1.969064 CCAAATGGGCGTTCACGGA 60.969 57.895 0.81 0.00 40.23 4.69
278 279 2.195123 GACCAAATGGGCGTTCACGG 62.195 60.000 4.17 0.00 42.05 4.94
279 280 1.209127 GACCAAATGGGCGTTCACG 59.791 57.895 4.17 0.00 42.05 4.35
286 287 2.700773 GCCACTCGACCAAATGGGC 61.701 63.158 4.17 0.00 42.05 5.36
287 288 2.046285 GGCCACTCGACCAAATGGG 61.046 63.158 0.00 0.00 44.81 4.00
288 289 0.680921 ATGGCCACTCGACCAAATGG 60.681 55.000 8.16 0.00 39.96 3.16
289 290 0.452987 CATGGCCACTCGACCAAATG 59.547 55.000 8.16 0.00 39.96 2.32
290 291 1.315257 GCATGGCCACTCGACCAAAT 61.315 55.000 8.16 0.00 39.96 2.32
291 292 1.971167 GCATGGCCACTCGACCAAA 60.971 57.895 8.16 0.00 39.96 3.28
292 293 2.359850 GCATGGCCACTCGACCAA 60.360 61.111 8.16 0.00 39.96 3.67
303 304 1.971167 TTGGTCGTTCTGGCATGGC 60.971 57.895 13.29 13.29 0.00 4.40
304 305 0.606401 AGTTGGTCGTTCTGGCATGG 60.606 55.000 0.00 0.00 0.00 3.66
305 306 0.798776 GAGTTGGTCGTTCTGGCATG 59.201 55.000 0.00 0.00 0.00 4.06
306 307 0.670546 CGAGTTGGTCGTTCTGGCAT 60.671 55.000 0.00 0.00 44.20 4.40
307 308 1.300620 CGAGTTGGTCGTTCTGGCA 60.301 57.895 0.00 0.00 44.20 4.92
308 309 3.550656 CGAGTTGGTCGTTCTGGC 58.449 61.111 0.00 0.00 44.20 4.85
316 317 1.626654 CGTGTCATGGCGAGTTGGTC 61.627 60.000 0.00 0.00 0.00 4.02
317 318 1.667830 CGTGTCATGGCGAGTTGGT 60.668 57.895 0.00 0.00 0.00 3.67
318 319 2.390599 CCGTGTCATGGCGAGTTGG 61.391 63.158 0.00 0.00 0.00 3.77
319 320 2.390599 CCCGTGTCATGGCGAGTTG 61.391 63.158 5.46 0.00 0.00 3.16
320 321 2.047274 CCCGTGTCATGGCGAGTT 60.047 61.111 5.46 0.00 0.00 3.01
321 322 4.082523 CCCCGTGTCATGGCGAGT 62.083 66.667 5.46 0.00 0.00 4.18
322 323 3.770040 TCCCCGTGTCATGGCGAG 61.770 66.667 5.46 0.00 0.00 5.03
323 324 4.077184 GTCCCCGTGTCATGGCGA 62.077 66.667 5.46 0.00 0.00 5.54
335 336 4.699522 GATATGGCCGCCGTCCCC 62.700 72.222 7.61 0.00 0.00 4.81
336 337 3.591254 GAGATATGGCCGCCGTCCC 62.591 68.421 7.61 1.09 0.00 4.46
337 338 2.048127 GAGATATGGCCGCCGTCC 60.048 66.667 7.61 1.48 0.00 4.79
338 339 0.946221 CTTGAGATATGGCCGCCGTC 60.946 60.000 7.61 4.24 0.00 4.79
339 340 1.069765 CTTGAGATATGGCCGCCGT 59.930 57.895 9.62 9.62 0.00 5.68
340 341 0.668706 CTCTTGAGATATGGCCGCCG 60.669 60.000 4.58 0.00 0.00 6.46
341 342 0.952984 GCTCTTGAGATATGGCCGCC 60.953 60.000 1.04 1.04 0.00 6.13
342 343 0.952984 GGCTCTTGAGATATGGCCGC 60.953 60.000 0.00 0.00 0.00 6.53
343 344 0.683973 AGGCTCTTGAGATATGGCCG 59.316 55.000 0.00 0.00 43.68 6.13
344 345 1.881498 GCAGGCTCTTGAGATATGGCC 60.881 57.143 0.00 0.00 39.82 5.36
345 346 1.072015 AGCAGGCTCTTGAGATATGGC 59.928 52.381 1.30 0.00 0.00 4.40
346 347 2.104451 ACAGCAGGCTCTTGAGATATGG 59.896 50.000 1.30 0.00 0.00 2.74
347 348 3.391965 GACAGCAGGCTCTTGAGATATG 58.608 50.000 1.30 0.00 0.00 1.78
348 349 2.368221 GGACAGCAGGCTCTTGAGATAT 59.632 50.000 1.30 0.00 0.00 1.63
349 350 1.759445 GGACAGCAGGCTCTTGAGATA 59.241 52.381 1.30 0.00 0.00 1.98
350 351 0.540923 GGACAGCAGGCTCTTGAGAT 59.459 55.000 1.30 0.00 0.00 2.75
351 352 0.833409 TGGACAGCAGGCTCTTGAGA 60.833 55.000 1.30 0.00 0.00 3.27
352 353 0.391395 CTGGACAGCAGGCTCTTGAG 60.391 60.000 2.06 0.00 0.00 3.02
353 354 1.675801 CTGGACAGCAGGCTCTTGA 59.324 57.895 2.06 0.00 0.00 3.02
354 355 4.298009 CTGGACAGCAGGCTCTTG 57.702 61.111 0.00 0.00 0.00 3.02
364 365 2.664851 TTCCGTTGCGCTGGACAG 60.665 61.111 9.73 0.00 32.95 3.51
365 366 2.970324 GTTCCGTTGCGCTGGACA 60.970 61.111 9.73 2.28 32.95 4.02
366 367 4.072088 CGTTCCGTTGCGCTGGAC 62.072 66.667 9.73 3.88 32.95 4.02
367 368 4.595538 ACGTTCCGTTGCGCTGGA 62.596 61.111 9.73 10.93 36.35 3.86
368 369 4.072088 GACGTTCCGTTGCGCTGG 62.072 66.667 9.73 8.38 41.37 4.85
369 370 1.674611 CTAGACGTTCCGTTGCGCTG 61.675 60.000 9.73 0.00 41.37 5.18
370 371 1.443872 CTAGACGTTCCGTTGCGCT 60.444 57.895 9.73 0.00 41.37 5.92
371 372 1.403972 CTCTAGACGTTCCGTTGCGC 61.404 60.000 0.00 0.00 41.37 6.09
372 373 0.109873 ACTCTAGACGTTCCGTTGCG 60.110 55.000 0.00 0.00 41.37 4.85
373 374 1.719780 CAACTCTAGACGTTCCGTTGC 59.280 52.381 7.19 0.00 41.37 4.17
374 375 3.009301 ACAACTCTAGACGTTCCGTTG 57.991 47.619 15.14 15.14 41.37 4.10
375 376 3.378339 CAACAACTCTAGACGTTCCGTT 58.622 45.455 0.00 5.38 41.37 4.44
376 377 2.861360 GCAACAACTCTAGACGTTCCGT 60.861 50.000 0.00 0.00 45.10 4.69
377 378 1.719780 GCAACAACTCTAGACGTTCCG 59.280 52.381 0.00 0.00 0.00 4.30
378 379 2.731976 CAGCAACAACTCTAGACGTTCC 59.268 50.000 0.00 0.00 0.00 3.62
379 380 3.381949 ACAGCAACAACTCTAGACGTTC 58.618 45.455 0.00 0.00 0.00 3.95
380 381 3.454371 ACAGCAACAACTCTAGACGTT 57.546 42.857 0.00 0.00 0.00 3.99
381 382 3.454371 AACAGCAACAACTCTAGACGT 57.546 42.857 0.00 0.00 0.00 4.34
382 383 4.263209 CGATAACAGCAACAACTCTAGACG 59.737 45.833 0.00 0.00 0.00 4.18
383 384 5.162075 ACGATAACAGCAACAACTCTAGAC 58.838 41.667 0.00 0.00 0.00 2.59
384 385 5.048294 TGACGATAACAGCAACAACTCTAGA 60.048 40.000 0.00 0.00 0.00 2.43
385 386 5.161358 TGACGATAACAGCAACAACTCTAG 58.839 41.667 0.00 0.00 0.00 2.43
386 387 5.048294 TCTGACGATAACAGCAACAACTCTA 60.048 40.000 0.00 0.00 35.61 2.43
387 388 3.990092 TGACGATAACAGCAACAACTCT 58.010 40.909 0.00 0.00 0.00 3.24
388 389 3.987868 TCTGACGATAACAGCAACAACTC 59.012 43.478 0.00 0.00 35.61 3.01
389 390 3.990092 TCTGACGATAACAGCAACAACT 58.010 40.909 0.00 0.00 35.61 3.16
390 391 4.928661 ATCTGACGATAACAGCAACAAC 57.071 40.909 0.00 0.00 35.61 3.32
391 392 7.428282 TTTTATCTGACGATAACAGCAACAA 57.572 32.000 0.00 0.00 40.76 2.83
392 393 7.549134 AGATTTTATCTGACGATAACAGCAACA 59.451 33.333 0.00 0.00 40.76 3.33
393 394 7.910304 AGATTTTATCTGACGATAACAGCAAC 58.090 34.615 0.00 0.00 40.76 4.17
394 395 8.390354 CAAGATTTTATCTGACGATAACAGCAA 58.610 33.333 0.00 0.00 40.76 3.91
395 396 7.763985 TCAAGATTTTATCTGACGATAACAGCA 59.236 33.333 0.00 0.00 40.76 4.41
396 397 8.058915 GTCAAGATTTTATCTGACGATAACAGC 58.941 37.037 0.00 0.00 40.76 4.40
397 398 8.543774 GGTCAAGATTTTATCTGACGATAACAG 58.456 37.037 0.00 0.00 40.76 3.16
398 399 8.038351 TGGTCAAGATTTTATCTGACGATAACA 58.962 33.333 0.00 0.00 40.76 2.41
399 400 8.328864 GTGGTCAAGATTTTATCTGACGATAAC 58.671 37.037 0.00 0.00 40.76 1.89
400 401 8.258007 AGTGGTCAAGATTTTATCTGACGATAA 58.742 33.333 0.00 0.00 40.13 1.75
401 402 7.706607 CAGTGGTCAAGATTTTATCTGACGATA 59.293 37.037 0.00 0.00 40.13 2.92
402 403 6.536582 CAGTGGTCAAGATTTTATCTGACGAT 59.463 38.462 0.00 0.00 40.13 3.73
403 404 5.869344 CAGTGGTCAAGATTTTATCTGACGA 59.131 40.000 0.00 0.00 40.13 4.20
404 405 5.446473 GCAGTGGTCAAGATTTTATCTGACG 60.446 44.000 0.00 0.00 40.13 4.35
405 406 5.163713 GGCAGTGGTCAAGATTTTATCTGAC 60.164 44.000 0.00 0.00 40.13 3.51
406 407 4.943705 GGCAGTGGTCAAGATTTTATCTGA 59.056 41.667 0.00 0.00 40.13 3.27
407 408 4.701651 TGGCAGTGGTCAAGATTTTATCTG 59.298 41.667 0.00 0.00 40.13 2.90
408 409 4.922206 TGGCAGTGGTCAAGATTTTATCT 58.078 39.130 0.00 0.00 42.61 1.98
409 410 5.402398 GTTGGCAGTGGTCAAGATTTTATC 58.598 41.667 0.00 0.00 39.75 1.75
410 411 4.220602 GGTTGGCAGTGGTCAAGATTTTAT 59.779 41.667 0.00 0.00 39.75 1.40
411 412 3.572255 GGTTGGCAGTGGTCAAGATTTTA 59.428 43.478 0.00 0.00 39.75 1.52
412 413 2.365293 GGTTGGCAGTGGTCAAGATTTT 59.635 45.455 0.00 0.00 39.75 1.82
413 414 1.963515 GGTTGGCAGTGGTCAAGATTT 59.036 47.619 0.00 0.00 39.75 2.17
414 415 1.133513 TGGTTGGCAGTGGTCAAGATT 60.134 47.619 0.00 0.00 39.75 2.40
415 416 0.478072 TGGTTGGCAGTGGTCAAGAT 59.522 50.000 0.00 0.00 39.75 2.40
416 417 0.257328 TTGGTTGGCAGTGGTCAAGA 59.743 50.000 0.00 0.00 39.75 3.02
417 418 0.670162 CTTGGTTGGCAGTGGTCAAG 59.330 55.000 0.00 0.00 39.75 3.02
418 419 1.391157 GCTTGGTTGGCAGTGGTCAA 61.391 55.000 0.00 0.00 35.97 3.18
419 420 1.827789 GCTTGGTTGGCAGTGGTCA 60.828 57.895 0.00 0.00 0.00 4.02
420 421 1.529244 AGCTTGGTTGGCAGTGGTC 60.529 57.895 0.00 0.00 0.00 4.02
421 422 1.829533 CAGCTTGGTTGGCAGTGGT 60.830 57.895 0.00 0.00 0.00 4.16
422 423 3.045142 CAGCTTGGTTGGCAGTGG 58.955 61.111 0.00 0.00 0.00 4.00
423 424 2.337532 GCAGCTTGGTTGGCAGTG 59.662 61.111 0.00 0.00 0.00 3.66
424 425 3.289834 CGCAGCTTGGTTGGCAGT 61.290 61.111 0.00 0.00 0.00 4.40
425 426 3.289834 ACGCAGCTTGGTTGGCAG 61.290 61.111 0.00 0.00 0.00 4.85
426 427 3.594775 CACGCAGCTTGGTTGGCA 61.595 61.111 0.00 0.00 0.00 4.92
436 437 3.187414 GCAGAGAGAGCACGCAGC 61.187 66.667 0.00 0.00 46.19 5.25
437 438 1.352882 CTTGCAGAGAGAGCACGCAG 61.353 60.000 0.00 0.00 42.54 5.18
438 439 1.373873 CTTGCAGAGAGAGCACGCA 60.374 57.895 0.00 0.00 42.54 5.24
439 440 3.472533 CTTGCAGAGAGAGCACGC 58.527 61.111 0.00 0.00 42.54 5.34
440 441 2.442999 CGCTTGCAGAGAGAGCACG 61.443 63.158 8.00 0.00 42.54 5.34
441 442 2.099431 CCGCTTGCAGAGAGAGCAC 61.099 63.158 8.00 0.00 42.54 4.40
442 443 2.263852 CCGCTTGCAGAGAGAGCA 59.736 61.111 8.00 0.00 40.85 4.26
443 444 3.194308 GCCGCTTGCAGAGAGAGC 61.194 66.667 0.00 0.00 40.77 4.09
444 445 2.511145 GGCCGCTTGCAGAGAGAG 60.511 66.667 0.00 0.00 43.89 3.20
445 446 4.087892 GGGCCGCTTGCAGAGAGA 62.088 66.667 0.00 0.00 43.89 3.10
450 451 3.918253 TAACAGGGGCCGCTTGCAG 62.918 63.158 21.66 11.58 43.89 4.41
451 452 3.960136 TAACAGGGGCCGCTTGCA 61.960 61.111 21.66 4.64 43.89 4.08
452 453 3.440415 GTAACAGGGGCCGCTTGC 61.440 66.667 21.66 6.72 40.16 4.01
453 454 1.586154 CTTGTAACAGGGGCCGCTTG 61.586 60.000 21.66 17.43 0.00 4.01
454 455 1.303317 CTTGTAACAGGGGCCGCTT 60.303 57.895 21.66 9.64 0.00 4.68
455 456 2.351276 CTTGTAACAGGGGCCGCT 59.649 61.111 18.22 18.22 0.00 5.52
456 457 2.750237 CCTTGTAACAGGGGCCGC 60.750 66.667 12.88 12.88 0.00 6.53
457 458 1.906105 TAGCCTTGTAACAGGGGCCG 61.906 60.000 0.00 0.00 45.07 6.13
458 459 0.107165 CTAGCCTTGTAACAGGGGCC 60.107 60.000 0.00 0.00 45.07 5.80
459 460 0.748367 GCTAGCCTTGTAACAGGGGC 60.748 60.000 2.29 1.87 44.38 5.80
460 461 0.618458 TGCTAGCCTTGTAACAGGGG 59.382 55.000 13.29 0.00 34.01 4.79
461 462 1.279271 AGTGCTAGCCTTGTAACAGGG 59.721 52.381 13.29 0.00 34.01 4.45
462 463 2.770164 AGTGCTAGCCTTGTAACAGG 57.230 50.000 13.29 0.00 36.95 4.00
463 464 3.927142 GTGTAGTGCTAGCCTTGTAACAG 59.073 47.826 13.29 0.00 0.00 3.16
464 465 3.322541 TGTGTAGTGCTAGCCTTGTAACA 59.677 43.478 13.29 7.17 0.00 2.41
465 466 3.921677 TGTGTAGTGCTAGCCTTGTAAC 58.078 45.455 13.29 2.01 0.00 2.50
466 467 4.819105 ATGTGTAGTGCTAGCCTTGTAA 57.181 40.909 13.29 0.00 0.00 2.41
467 468 4.819105 AATGTGTAGTGCTAGCCTTGTA 57.181 40.909 13.29 0.00 0.00 2.41
468 469 3.703001 AATGTGTAGTGCTAGCCTTGT 57.297 42.857 13.29 0.00 0.00 3.16
469 470 3.871594 GGTAATGTGTAGTGCTAGCCTTG 59.128 47.826 13.29 0.00 0.00 3.61
470 471 3.517901 TGGTAATGTGTAGTGCTAGCCTT 59.482 43.478 13.29 2.52 0.00 4.35
471 472 3.104512 TGGTAATGTGTAGTGCTAGCCT 58.895 45.455 13.29 11.39 0.00 4.58
472 473 3.195661 GTGGTAATGTGTAGTGCTAGCC 58.804 50.000 13.29 3.49 0.00 3.93
473 474 2.858344 CGTGGTAATGTGTAGTGCTAGC 59.142 50.000 8.10 8.10 0.00 3.42
474 475 4.103357 GTCGTGGTAATGTGTAGTGCTAG 58.897 47.826 0.00 0.00 0.00 3.42
475 476 3.506844 TGTCGTGGTAATGTGTAGTGCTA 59.493 43.478 0.00 0.00 0.00 3.49
476 477 2.297880 TGTCGTGGTAATGTGTAGTGCT 59.702 45.455 0.00 0.00 0.00 4.40
477 478 2.679450 TGTCGTGGTAATGTGTAGTGC 58.321 47.619 0.00 0.00 0.00 4.40
478 479 6.075046 CGATAATGTCGTGGTAATGTGTAGTG 60.075 42.308 0.00 0.00 45.19 2.74
479 480 5.975344 CGATAATGTCGTGGTAATGTGTAGT 59.025 40.000 0.00 0.00 45.19 2.73
480 481 6.434181 CGATAATGTCGTGGTAATGTGTAG 57.566 41.667 0.00 0.00 45.19 2.74
494 495 2.213499 CTCCTGGCCAACGATAATGTC 58.787 52.381 7.01 0.00 0.00 3.06
495 496 1.747206 GCTCCTGGCCAACGATAATGT 60.747 52.381 7.01 0.00 34.27 2.71
496 497 0.947244 GCTCCTGGCCAACGATAATG 59.053 55.000 7.01 0.00 34.27 1.90
497 498 0.532862 CGCTCCTGGCCAACGATAAT 60.533 55.000 7.01 0.00 37.74 1.28
498 499 1.153449 CGCTCCTGGCCAACGATAA 60.153 57.895 7.01 0.00 37.74 1.75
499 500 2.055633 TCGCTCCTGGCCAACGATA 61.056 57.895 7.01 0.00 37.74 2.92
500 501 3.390521 TCGCTCCTGGCCAACGAT 61.391 61.111 7.01 0.00 37.74 3.73
501 502 4.373116 GTCGCTCCTGGCCAACGA 62.373 66.667 7.01 11.37 37.74 3.85
502 503 4.680237 TGTCGCTCCTGGCCAACG 62.680 66.667 7.01 8.92 37.74 4.10
503 504 2.743928 CTGTCGCTCCTGGCCAAC 60.744 66.667 7.01 0.45 37.74 3.77
504 505 2.922503 TCTGTCGCTCCTGGCCAA 60.923 61.111 7.01 0.00 37.74 4.52
505 506 3.385384 CTCTGTCGCTCCTGGCCA 61.385 66.667 4.71 4.71 37.74 5.36
506 507 3.386237 ACTCTGTCGCTCCTGGCC 61.386 66.667 0.00 0.00 37.74 5.36
507 508 2.125753 CACTCTGTCGCTCCTGGC 60.126 66.667 0.00 0.00 37.64 4.85
508 509 2.575993 CCACTCTGTCGCTCCTGG 59.424 66.667 0.00 0.00 0.00 4.45
509 510 2.125753 GCCACTCTGTCGCTCCTG 60.126 66.667 0.00 0.00 0.00 3.86
510 511 2.601666 TGCCACTCTGTCGCTCCT 60.602 61.111 0.00 0.00 0.00 3.69
511 512 1.595993 TAGTGCCACTCTGTCGCTCC 61.596 60.000 0.00 0.00 0.00 4.70
512 513 0.456995 GTAGTGCCACTCTGTCGCTC 60.457 60.000 0.00 0.00 0.00 5.03
513 514 0.896019 AGTAGTGCCACTCTGTCGCT 60.896 55.000 0.00 0.00 0.00 4.93
514 515 0.038159 AAGTAGTGCCACTCTGTCGC 60.038 55.000 0.00 0.00 0.00 5.19
515 516 1.702886 CAAGTAGTGCCACTCTGTCG 58.297 55.000 0.00 0.00 0.00 4.35
526 527 1.270094 TGTCCAAGACGGCAAGTAGTG 60.270 52.381 0.00 0.00 34.95 2.74
527 528 1.045407 TGTCCAAGACGGCAAGTAGT 58.955 50.000 0.00 0.00 34.95 2.73
528 529 1.429463 GTGTCCAAGACGGCAAGTAG 58.571 55.000 0.00 0.00 34.95 2.57
529 530 0.034337 GGTGTCCAAGACGGCAAGTA 59.966 55.000 0.00 0.00 34.95 2.24
530 531 1.227853 GGTGTCCAAGACGGCAAGT 60.228 57.895 0.00 0.00 34.95 3.16
531 532 1.966451 GGGTGTCCAAGACGGCAAG 60.966 63.158 0.00 0.00 34.95 4.01
532 533 2.112297 GGGTGTCCAAGACGGCAA 59.888 61.111 0.00 0.00 34.95 4.52
533 534 4.308458 CGGGTGTCCAAGACGGCA 62.308 66.667 0.00 0.00 34.95 5.69
535 536 2.162338 TAAGCGGGTGTCCAAGACGG 62.162 60.000 0.00 0.00 34.95 4.79
536 537 0.320073 TTAAGCGGGTGTCCAAGACG 60.320 55.000 0.00 0.00 34.95 4.18
537 538 1.534163 GTTTAAGCGGGTGTCCAAGAC 59.466 52.381 0.00 0.00 0.00 3.01
538 539 1.543871 GGTTTAAGCGGGTGTCCAAGA 60.544 52.381 0.00 0.00 0.00 3.02
539 540 0.879090 GGTTTAAGCGGGTGTCCAAG 59.121 55.000 0.00 0.00 0.00 3.61
540 541 0.183014 TGGTTTAAGCGGGTGTCCAA 59.817 50.000 0.00 0.00 0.00 3.53
541 542 0.535553 GTGGTTTAAGCGGGTGTCCA 60.536 55.000 0.00 0.00 0.00 4.02
542 543 1.239296 GGTGGTTTAAGCGGGTGTCC 61.239 60.000 0.00 0.00 0.00 4.02
543 544 0.250597 AGGTGGTTTAAGCGGGTGTC 60.251 55.000 0.00 0.00 0.00 3.67
544 545 0.250597 GAGGTGGTTTAAGCGGGTGT 60.251 55.000 0.00 0.00 0.00 4.16
545 546 0.958876 GGAGGTGGTTTAAGCGGGTG 60.959 60.000 0.00 0.00 0.00 4.61
546 547 1.377612 GGAGGTGGTTTAAGCGGGT 59.622 57.895 0.00 0.00 0.00 5.28
547 548 0.250989 TTGGAGGTGGTTTAAGCGGG 60.251 55.000 0.00 0.00 0.00 6.13
548 549 0.879090 GTTGGAGGTGGTTTAAGCGG 59.121 55.000 0.00 0.00 0.00 5.52
549 550 1.600023 TGTTGGAGGTGGTTTAAGCG 58.400 50.000 0.00 0.00 0.00 4.68
561 562 1.741401 TCGCTCGGCATTGTTGGAG 60.741 57.895 0.00 0.00 0.00 3.86
569 570 0.108186 TCTGAAATGTCGCTCGGCAT 60.108 50.000 3.28 3.28 42.90 4.40
570 571 0.737367 CTCTGAAATGTCGCTCGGCA 60.737 55.000 0.00 0.00 0.00 5.69
601 602 2.511373 CGGCAATGCTGACCGCTA 60.511 61.111 8.66 0.00 37.02 4.26
602 603 4.704833 ACGGCAATGCTGACCGCT 62.705 61.111 22.20 0.00 42.44 5.52
636 639 3.962063 TGACTGGTACTTACTGTGGTTCA 59.038 43.478 0.00 0.00 0.00 3.18
637 640 4.595762 TGACTGGTACTTACTGTGGTTC 57.404 45.455 0.00 0.00 0.00 3.62
638 641 4.443881 GGTTGACTGGTACTTACTGTGGTT 60.444 45.833 0.00 0.00 0.00 3.67
640 643 3.660865 GGTTGACTGGTACTTACTGTGG 58.339 50.000 0.00 0.00 0.00 4.17
641 644 3.314553 CGGTTGACTGGTACTTACTGTG 58.685 50.000 0.00 0.00 0.00 3.66
695 702 8.824159 ACTCAAGATCATGTACATTGCTATAC 57.176 34.615 5.37 0.00 0.00 1.47
698 705 9.264719 CATAACTCAAGATCATGTACATTGCTA 57.735 33.333 5.37 0.00 0.00 3.49
719 744 5.725864 GCGACCGGACTAACATTTTCATAAC 60.726 44.000 9.46 0.00 0.00 1.89
720 745 4.330620 GCGACCGGACTAACATTTTCATAA 59.669 41.667 9.46 0.00 0.00 1.90
721 746 3.866910 GCGACCGGACTAACATTTTCATA 59.133 43.478 9.46 0.00 0.00 2.15
723 748 2.070783 GCGACCGGACTAACATTTTCA 58.929 47.619 9.46 0.00 0.00 2.69
724 749 2.070783 TGCGACCGGACTAACATTTTC 58.929 47.619 9.46 0.00 0.00 2.29
725 750 2.172851 TGCGACCGGACTAACATTTT 57.827 45.000 9.46 0.00 0.00 1.82
728 753 2.396590 AAATGCGACCGGACTAACAT 57.603 45.000 9.46 3.08 0.00 2.71
729 754 2.070783 GAAAATGCGACCGGACTAACA 58.929 47.619 9.46 0.29 0.00 2.41
730 755 2.344025 AGAAAATGCGACCGGACTAAC 58.656 47.619 9.46 0.00 0.00 2.34
731 756 2.613691 GAGAAAATGCGACCGGACTAA 58.386 47.619 9.46 0.00 0.00 2.24
732 757 1.468565 CGAGAAAATGCGACCGGACTA 60.469 52.381 9.46 0.00 0.00 2.59
734 759 1.012486 ACGAGAAAATGCGACCGGAC 61.012 55.000 9.46 0.00 0.00 4.79
735 760 0.734942 GACGAGAAAATGCGACCGGA 60.735 55.000 9.46 0.00 0.00 5.14
739 2637 3.499048 TGTCTAGACGAGAAAATGCGAC 58.501 45.455 17.85 0.00 35.37 5.19
741 2639 3.301906 CACTGTCTAGACGAGAAAATGCG 59.698 47.826 21.64 0.00 35.37 4.73
743 2641 4.859798 GGTCACTGTCTAGACGAGAAAATG 59.140 45.833 21.64 13.06 35.37 2.32
752 2650 1.248785 TGCCCGGTCACTGTCTAGAC 61.249 60.000 16.32 16.32 0.00 2.59
756 2654 4.008933 GCTGCCCGGTCACTGTCT 62.009 66.667 0.00 0.00 0.00 3.41
776 2674 2.907917 CCCAACAAACGCCCGGAA 60.908 61.111 0.73 0.00 0.00 4.30
777 2675 3.875023 TCCCAACAAACGCCCGGA 61.875 61.111 0.73 0.00 0.00 5.14
781 2679 0.674269 TATCCGTCCCAACAAACGCC 60.674 55.000 0.00 0.00 37.56 5.68
786 2684 2.774809 TCCATCATATCCGTCCCAACAA 59.225 45.455 0.00 0.00 0.00 2.83
787 2685 2.104111 GTCCATCATATCCGTCCCAACA 59.896 50.000 0.00 0.00 0.00 3.33
788 2686 2.767505 GTCCATCATATCCGTCCCAAC 58.232 52.381 0.00 0.00 0.00 3.77
803 2701 2.047274 CAAGCCGTGACCGTCCAT 60.047 61.111 0.00 0.00 0.00 3.41
804 2702 2.709125 CTTCAAGCCGTGACCGTCCA 62.709 60.000 0.00 0.00 35.39 4.02
806 2704 1.282930 GACTTCAAGCCGTGACCGTC 61.283 60.000 0.00 0.00 35.39 4.79
807 2705 1.300697 GACTTCAAGCCGTGACCGT 60.301 57.895 0.00 0.00 35.39 4.83
849 2790 0.040246 GCCGCTATAGGTCACGACTC 60.040 60.000 1.04 0.00 0.00 3.36
868 2810 2.797087 GCACCATGAATCCATTGCGAAG 60.797 50.000 0.00 0.00 29.94 3.79
869 2811 1.134753 GCACCATGAATCCATTGCGAA 59.865 47.619 0.00 0.00 29.94 4.70
870 2812 0.740149 GCACCATGAATCCATTGCGA 59.260 50.000 0.00 0.00 29.94 5.10
871 2813 0.249155 GGCACCATGAATCCATTGCG 60.249 55.000 0.00 0.00 37.38 4.85
923 4383 8.985922 AGCCATGTGTCTATGTATATATCACAT 58.014 33.333 16.78 16.78 40.55 3.21
966 4434 4.636249 TGGTTCTGCTTTCTTCTCTTCTC 58.364 43.478 0.00 0.00 0.00 2.87
967 4435 4.696479 TGGTTCTGCTTTCTTCTCTTCT 57.304 40.909 0.00 0.00 0.00 2.85
968 4436 5.059833 TCTTGGTTCTGCTTTCTTCTCTTC 58.940 41.667 0.00 0.00 0.00 2.87
969 4437 5.041191 TCTTGGTTCTGCTTTCTTCTCTT 57.959 39.130 0.00 0.00 0.00 2.85
970 4438 4.696479 TCTTGGTTCTGCTTTCTTCTCT 57.304 40.909 0.00 0.00 0.00 3.10
1024 4495 2.421424 GTGAGATGGATGTGCTGGAAAC 59.579 50.000 0.00 0.00 0.00 2.78
1028 4499 1.474677 GGAGTGAGATGGATGTGCTGG 60.475 57.143 0.00 0.00 0.00 4.85
1048 4522 0.539051 ACGGGGATCAGCAAGAGAAG 59.461 55.000 0.00 0.00 0.00 2.85
1049 4523 0.984230 AACGGGGATCAGCAAGAGAA 59.016 50.000 0.00 0.00 0.00 2.87
1050 4524 0.250234 CAACGGGGATCAGCAAGAGA 59.750 55.000 0.00 0.00 0.00 3.10
1111 4600 4.115401 TGAACACCGATGAATCTCTCTG 57.885 45.455 0.00 0.00 0.00 3.35
1118 4607 2.430694 TCCTCGATGAACACCGATGAAT 59.569 45.455 0.00 0.00 34.08 2.57
1159 4663 2.034066 AAGGATGGTGGTGGCGTG 59.966 61.111 0.00 0.00 0.00 5.34
1162 4666 3.443045 CGCAAGGATGGTGGTGGC 61.443 66.667 0.00 0.00 0.00 5.01
1233 4737 3.554960 CGTTGAACCAGATGGAGAAGACA 60.555 47.826 5.72 0.00 38.94 3.41
1497 5016 2.049063 GACGGCAGAAGCGTGTCT 60.049 61.111 0.00 0.00 41.11 3.41
1622 5141 0.462047 GATGTCAGGGCCGTTGTAGG 60.462 60.000 0.00 0.00 0.00 3.18
1734 9029 2.556287 CTCGCGACAAACTTGCCC 59.444 61.111 3.71 0.00 0.00 5.36
1860 9155 1.938585 TCCAAGAGACCGACCAATCT 58.061 50.000 0.00 0.00 0.00 2.40
2052 9347 2.099756 GCTGTTTGCCTTGTGTCTTCTT 59.900 45.455 0.00 0.00 35.15 2.52
2109 9482 9.770097 GAATCATATCCATAGAAGTCAGTTTCA 57.230 33.333 0.00 0.00 0.00 2.69
2256 9629 1.181098 ATGCAAAGCTCTGGCCGTTT 61.181 50.000 0.00 0.00 39.73 3.60
2302 9675 0.322008 GACAGCAACCTCCTGGGAAG 60.322 60.000 0.00 0.00 38.76 3.46
2328 9701 5.808030 GTGAGCTAGTGTAGAAGTCAATTCC 59.192 44.000 0.00 0.00 38.84 3.01
2681 10054 4.631377 TCACATCATTTAGCTTCTTCACGG 59.369 41.667 0.00 0.00 0.00 4.94
3194 10571 1.076995 CTGGAAACCCGAATCCCCC 60.077 63.158 0.00 0.00 34.68 5.40
3303 10680 1.201647 TCGACGAACTCCAGAATCCAC 59.798 52.381 0.00 0.00 0.00 4.02
3537 10933 1.106285 GCAGGGATAAGGGCAACTTG 58.894 55.000 3.41 0.00 40.37 3.16
3623 11040 9.838339 ATAGACTTAAACATCCAAACAGATAGG 57.162 33.333 0.00 0.00 0.00 2.57
3651 11068 5.664457 TGCTGGAAGTAGATAGATGTGTTG 58.336 41.667 0.00 0.00 35.30 3.33
3691 11110 6.507958 TCGATCTAGCTCATAAGGATCAAG 57.492 41.667 0.00 0.00 34.29 3.02
3752 11176 2.173569 GGCTAGATTGATCCAACCTGGT 59.826 50.000 0.00 0.00 39.03 4.00
3753 11177 2.173356 TGGCTAGATTGATCCAACCTGG 59.827 50.000 0.00 0.00 39.43 4.45
3754 11178 3.118112 ACTGGCTAGATTGATCCAACCTG 60.118 47.826 3.17 0.00 0.00 4.00
3800 11227 6.916360 ACATTGGGTTCATTAATCTGTTGT 57.084 33.333 0.00 0.00 0.00 3.32
3968 11397 0.464373 AGGTTGATATGCGGGCAGTG 60.464 55.000 0.00 0.00 0.00 3.66
3978 11407 4.790790 AGAGGAAGGGTTCAAGGTTGATAT 59.209 41.667 0.00 0.00 37.00 1.63
4070 11499 0.460284 AGGATTACTCTGCGTTGGCG 60.460 55.000 0.00 0.00 44.10 5.69
4076 11505 0.312416 CGAGGGAGGATTACTCTGCG 59.688 60.000 0.00 0.00 45.83 5.18
4106 11535 3.422303 TGCGCGATGCTCCACAAC 61.422 61.111 12.10 0.00 46.63 3.32
4274 11703 1.376037 CTTCGAGGGGCCTGTTGTC 60.376 63.158 0.84 0.00 0.00 3.18
4328 11757 3.151710 TACCTGGTCGCGGATGGG 61.152 66.667 6.13 6.91 0.00 4.00
4337 11766 4.814294 CCCGCGCAGTACCTGGTC 62.814 72.222 8.75 0.00 31.21 4.02
4387 11816 0.106519 GCTCAGGCTCTCCTCTCTCT 60.107 60.000 0.00 0.00 41.93 3.10
4388 11817 0.395586 TGCTCAGGCTCTCCTCTCTC 60.396 60.000 0.00 0.00 41.93 3.20
4391 11820 1.685421 GGTGCTCAGGCTCTCCTCT 60.685 63.158 0.00 0.00 41.93 3.69
4394 11823 2.899505 GAGGTGCTCAGGCTCTCC 59.100 66.667 0.00 0.00 39.59 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.