Multiple sequence alignment - TraesCS7A01G127000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G127000 chr7A 100.000 1815 0 0 1 1815 81640125 81638311 0.000000e+00 3352.0
1 TraesCS7A01G127000 chr7A 100.000 805 0 0 2138 2942 81637988 81637184 0.000000e+00 1487.0
2 TraesCS7A01G127000 chr7A 80.574 767 99 26 1 737 81767722 81766976 2.360000e-151 545.0
3 TraesCS7A01G127000 chr7A 100.000 275 0 0 3196 3470 81636930 81636656 3.090000e-140 508.0
4 TraesCS7A01G127000 chr7A 86.495 311 38 2 1 307 81775915 81775605 4.290000e-89 339.0
5 TraesCS7A01G127000 chr7A 95.294 170 8 0 3301 3470 635370828 635370659 1.590000e-68 270.0
6 TraesCS7A01G127000 chr7A 94.706 170 8 1 3301 3470 277504120 277503952 2.660000e-66 263.0
7 TraesCS7A01G127000 chr7A 96.190 105 2 2 3211 3315 230300985 230301087 1.660000e-38 171.0
8 TraesCS7A01G127000 chr7D 95.160 1818 63 14 1 1815 78208927 78207132 0.000000e+00 2846.0
9 TraesCS7A01G127000 chr7D 82.401 608 72 19 1 590 78300436 78299846 6.690000e-137 497.0
10 TraesCS7A01G127000 chr7D 86.854 426 30 15 2140 2546 78207068 78206650 1.470000e-123 453.0
11 TraesCS7A01G127000 chr7D 88.966 145 13 3 165 308 78306199 78306057 3.560000e-40 176.0
12 TraesCS7A01G127000 chr7B 93.184 1834 86 24 1 1815 25630096 25628283 0.000000e+00 2658.0
13 TraesCS7A01G127000 chr7B 81.713 607 79 17 1 590 25653583 25652992 8.710000e-131 477.0
14 TraesCS7A01G127000 chr7B 86.842 304 40 0 1 304 25663125 25662822 1.190000e-89 340.0
15 TraesCS7A01G127000 chr7B 82.477 428 28 20 2140 2546 25628219 25627818 7.180000e-87 331.0
16 TraesCS7A01G127000 chr7B 93.605 172 11 0 3299 3470 555714961 555715132 1.240000e-64 257.0
17 TraesCS7A01G127000 chr7B 91.270 126 9 2 165 289 25889412 25889536 1.660000e-38 171.0
18 TraesCS7A01G127000 chr7B 82.192 146 23 3 1151 1295 25890153 25890296 4.700000e-24 122.0
19 TraesCS7A01G127000 chr3A 95.930 172 7 0 3299 3470 150729721 150729550 2.640000e-71 279.0
20 TraesCS7A01G127000 chr3A 96.330 109 2 2 3207 3315 576419931 576419825 9.900000e-41 178.0
21 TraesCS7A01G127000 chr1A 95.322 171 7 1 3301 3470 158441445 158441275 1.590000e-68 270.0
22 TraesCS7A01G127000 chr4D 94.706 170 9 0 3301 3470 486181405 486181574 7.380000e-67 265.0
23 TraesCS7A01G127000 chr5D 93.678 174 10 1 3298 3470 458189510 458189337 3.440000e-65 259.0
24 TraesCS7A01G127000 chr5D 95.413 109 3 2 3207 3315 99307448 99307342 4.600000e-39 172.0
25 TraesCS7A01G127000 chr5D 95.413 109 2 3 3207 3315 201311965 201312070 1.660000e-38 171.0
26 TraesCS7A01G127000 chr6A 93.064 173 12 0 3298 3470 524364317 524364489 1.600000e-63 254.0
27 TraesCS7A01G127000 chr5B 93.103 174 10 2 3298 3470 170304679 170304851 1.600000e-63 254.0
28 TraesCS7A01G127000 chr5A 97.248 109 1 2 3207 3315 210535383 210535489 2.130000e-42 183.0
29 TraesCS7A01G127000 chr5A 90.984 122 8 3 3207 3326 616351213 616351333 9.970000e-36 161.0
30 TraesCS7A01G127000 chr1D 95.413 109 3 2 3207 3315 229321282 229321176 4.600000e-39 172.0
31 TraesCS7A01G127000 chr2A 95.413 109 2 3 3208 3315 203459639 203459745 1.660000e-38 171.0
32 TraesCS7A01G127000 chr2A 94.595 111 4 2 3205 3315 769576051 769575943 1.660000e-38 171.0
33 TraesCS7A01G127000 chr1B 81.132 106 7 4 2141 2246 529475174 529475082 4.800000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G127000 chr7A 81636656 81640125 3469 True 1782.333333 3352 100.0000 1 3470 3 chr7A.!!$R5 3469
1 TraesCS7A01G127000 chr7A 81766976 81767722 746 True 545.000000 545 80.5740 1 737 1 chr7A.!!$R1 736
2 TraesCS7A01G127000 chr7D 78206650 78208927 2277 True 1649.500000 2846 91.0070 1 2546 2 chr7D.!!$R3 2545
3 TraesCS7A01G127000 chr7D 78299846 78300436 590 True 497.000000 497 82.4010 1 590 1 chr7D.!!$R1 589
4 TraesCS7A01G127000 chr7B 25627818 25630096 2278 True 1494.500000 2658 87.8305 1 2546 2 chr7B.!!$R3 2545
5 TraesCS7A01G127000 chr7B 25652992 25653583 591 True 477.000000 477 81.7130 1 590 1 chr7B.!!$R1 589

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
49 50 0.967380 CCAGTTGGATGGTTGAGGGC 60.967 60.000 0.0 0.0 37.39 5.19 F
124 125 1.998315 CTTGCAGGTGAAGATCAGTCG 59.002 52.381 0.0 0.0 0.00 4.18 F
1158 1192 3.840594 TACCCGTTCCCATCCGCG 61.841 66.667 0.0 0.0 0.00 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1208 1242 0.106519 GCTCAGGCTCTCCTCTCTCT 60.107 60.0 0.0 0.0 41.93 3.10 R
1209 1243 0.395586 TGCTCAGGCTCTCCTCTCTC 60.396 60.0 0.0 0.0 41.93 3.20 R
2829 2923 0.093026 CTGACCGATTCGTTTCGCAC 59.907 55.0 5.2 2.4 37.80 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 0.967380 CCAGTTGGATGGTTGAGGGC 60.967 60.000 0.00 0.00 37.39 5.19
124 125 1.998315 CTTGCAGGTGAAGATCAGTCG 59.002 52.381 0.00 0.00 0.00 4.18
444 466 9.765795 ACTATGTAGTAGGAGTATTTCATTTGC 57.234 33.333 0.00 0.00 34.13 3.68
512 536 4.520492 TCCAGCAGTTTGAAGAAGAAATCC 59.480 41.667 0.00 0.00 0.00 3.01
957 991 4.465512 GCGCACGTCCCAATGCAG 62.466 66.667 0.30 0.00 42.17 4.41
1158 1192 3.840594 TACCCGTTCCCATCCGCG 61.841 66.667 0.00 0.00 0.00 6.46
1215 1249 1.691196 CCAGCTCCTGGTAGAGAGAG 58.309 60.000 3.09 0.00 45.82 3.20
1235 1269 1.381056 AGAGCCTGAGCACCTCGAT 60.381 57.895 0.00 0.00 43.56 3.59
2302 2366 4.056125 TCTCCGTGCACGCTCCTG 62.056 66.667 33.17 19.15 38.18 3.86
2320 2384 3.743017 GCTGGGGCAGGAATGGGA 61.743 66.667 0.00 0.00 38.54 4.37
2322 2386 1.152368 CTGGGGCAGGAATGGGATC 59.848 63.158 0.00 0.00 0.00 3.36
2323 2387 1.622132 TGGGGCAGGAATGGGATCA 60.622 57.895 0.00 0.00 0.00 2.92
2324 2388 1.000590 TGGGGCAGGAATGGGATCAT 61.001 55.000 0.00 0.00 34.56 2.45
2325 2389 1.075601 GGGGCAGGAATGGGATCATA 58.924 55.000 0.00 0.00 32.44 2.15
2328 2392 1.425066 GGCAGGAATGGGATCATACCA 59.575 52.381 0.00 0.00 43.22 3.25
2329 2393 2.508526 GCAGGAATGGGATCATACCAC 58.491 52.381 0.00 0.00 41.58 4.16
2331 2395 2.442878 CAGGAATGGGATCATACCACCA 59.557 50.000 0.00 0.00 41.58 4.17
2332 2396 3.074985 CAGGAATGGGATCATACCACCAT 59.925 47.826 0.00 0.00 45.18 3.55
2339 2410 2.744202 GGATCATACCACCATCATTCGC 59.256 50.000 0.00 0.00 0.00 4.70
2418 2489 1.377333 GGTTGCTACAGGGCTCCAC 60.377 63.158 0.00 0.00 0.00 4.02
2443 2523 2.190578 GGGAGCCAATCGGGACAG 59.809 66.667 0.00 0.00 40.01 3.51
2460 2542 3.507622 GGACAGGAAGGGATTTGTCAAAG 59.492 47.826 4.03 0.00 41.22 2.77
2461 2543 2.893489 ACAGGAAGGGATTTGTCAAAGC 59.107 45.455 4.95 4.95 0.00 3.51
2516 2610 4.343526 AGTGTGTGCTCTAATCCTATCCTG 59.656 45.833 0.00 0.00 0.00 3.86
2522 2616 3.442273 GCTCTAATCCTATCCTGTCCTCG 59.558 52.174 0.00 0.00 0.00 4.63
2549 2643 5.855235 GTCTAATAGAGACGGCAAACAAAC 58.145 41.667 0.00 0.00 45.16 2.93
2550 2644 4.933400 TCTAATAGAGACGGCAAACAAACC 59.067 41.667 0.00 0.00 0.00 3.27
2551 2645 2.623878 TAGAGACGGCAAACAAACCA 57.376 45.000 0.00 0.00 0.00 3.67
2552 2646 1.308998 AGAGACGGCAAACAAACCAG 58.691 50.000 0.00 0.00 0.00 4.00
2553 2647 0.317854 GAGACGGCAAACAAACCAGC 60.318 55.000 0.00 0.00 0.00 4.85
2554 2648 0.751643 AGACGGCAAACAAACCAGCT 60.752 50.000 0.00 0.00 0.00 4.24
2555 2649 0.594796 GACGGCAAACAAACCAGCTG 60.595 55.000 6.78 6.78 39.22 4.24
2556 2650 1.300080 CGGCAAACAAACCAGCTGG 60.300 57.895 31.60 31.60 42.17 4.85
2557 2651 1.595109 GGCAAACAAACCAGCTGGC 60.595 57.895 33.06 15.42 39.32 4.85
2558 2652 1.143620 GCAAACAAACCAGCTGGCA 59.856 52.632 33.06 0.00 39.32 4.92
2559 2653 0.461693 GCAAACAAACCAGCTGGCAA 60.462 50.000 33.06 0.00 39.32 4.52
2560 2654 1.811176 GCAAACAAACCAGCTGGCAAT 60.811 47.619 33.06 16.51 39.32 3.56
2561 2655 1.868498 CAAACAAACCAGCTGGCAATG 59.132 47.619 33.06 27.68 39.32 2.82
2562 2656 1.122227 AACAAACCAGCTGGCAATGT 58.878 45.000 33.06 28.32 39.32 2.71
2563 2657 1.993956 ACAAACCAGCTGGCAATGTA 58.006 45.000 33.06 0.00 39.32 2.29
2564 2658 2.528564 ACAAACCAGCTGGCAATGTAT 58.471 42.857 33.06 8.48 39.32 2.29
2565 2659 3.696045 ACAAACCAGCTGGCAATGTATA 58.304 40.909 33.06 0.00 39.32 1.47
2566 2660 3.443681 ACAAACCAGCTGGCAATGTATAC 59.556 43.478 33.06 0.00 39.32 1.47
2567 2661 3.652057 AACCAGCTGGCAATGTATACT 57.348 42.857 33.06 5.96 39.32 2.12
2568 2662 3.199880 ACCAGCTGGCAATGTATACTC 57.800 47.619 33.06 0.00 39.32 2.59
2569 2663 2.158755 ACCAGCTGGCAATGTATACTCC 60.159 50.000 33.06 1.36 39.32 3.85
2570 2664 2.498167 CAGCTGGCAATGTATACTCCC 58.502 52.381 5.57 0.24 0.00 4.30
2571 2665 2.126882 AGCTGGCAATGTATACTCCCA 58.873 47.619 4.17 4.65 0.00 4.37
2572 2666 2.509548 AGCTGGCAATGTATACTCCCAA 59.490 45.455 4.17 0.00 0.00 4.12
2573 2667 2.618709 GCTGGCAATGTATACTCCCAAC 59.381 50.000 4.17 0.00 0.00 3.77
2574 2668 2.872245 CTGGCAATGTATACTCCCAACG 59.128 50.000 4.17 0.00 0.00 4.10
2575 2669 2.237643 TGGCAATGTATACTCCCAACGT 59.762 45.455 4.17 0.00 0.00 3.99
2576 2670 3.275999 GGCAATGTATACTCCCAACGTT 58.724 45.455 4.17 0.00 0.00 3.99
2577 2671 4.081031 TGGCAATGTATACTCCCAACGTTA 60.081 41.667 0.00 0.00 0.00 3.18
2578 2672 4.877251 GGCAATGTATACTCCCAACGTTAA 59.123 41.667 0.00 0.00 0.00 2.01
2579 2673 5.354792 GGCAATGTATACTCCCAACGTTAAA 59.645 40.000 0.00 0.00 0.00 1.52
2580 2674 6.127952 GGCAATGTATACTCCCAACGTTAAAA 60.128 38.462 0.00 0.00 0.00 1.52
2581 2675 7.306953 GCAATGTATACTCCCAACGTTAAAAA 58.693 34.615 0.00 0.00 0.00 1.94
2598 2692 4.934316 AAAAAGGGGGCGTGCTAA 57.066 50.000 0.00 0.00 0.00 3.09
2599 2693 2.653557 AAAAAGGGGGCGTGCTAAG 58.346 52.632 0.00 0.00 0.00 2.18
2600 2694 0.111639 AAAAAGGGGGCGTGCTAAGA 59.888 50.000 0.00 0.00 0.00 2.10
2601 2695 0.322546 AAAAGGGGGCGTGCTAAGAG 60.323 55.000 0.00 0.00 0.00 2.85
2602 2696 1.489560 AAAGGGGGCGTGCTAAGAGT 61.490 55.000 0.00 0.00 0.00 3.24
2603 2697 1.900545 AAGGGGGCGTGCTAAGAGTC 61.901 60.000 0.00 0.00 0.00 3.36
2604 2698 2.202756 GGGGCGTGCTAAGAGTCG 60.203 66.667 0.00 0.00 0.00 4.18
2605 2699 2.202756 GGGCGTGCTAAGAGTCGG 60.203 66.667 0.00 0.00 0.00 4.79
2606 2700 2.886124 GGCGTGCTAAGAGTCGGC 60.886 66.667 0.00 0.00 41.00 5.54
2607 2701 2.886124 GCGTGCTAAGAGTCGGCC 60.886 66.667 0.00 0.00 0.00 6.13
2608 2702 2.571757 CGTGCTAAGAGTCGGCCA 59.428 61.111 2.24 0.00 0.00 5.36
2609 2703 1.517257 CGTGCTAAGAGTCGGCCAG 60.517 63.158 2.24 0.00 0.00 4.85
2610 2704 1.811679 GTGCTAAGAGTCGGCCAGC 60.812 63.158 2.24 2.17 0.00 4.85
2611 2705 2.282783 TGCTAAGAGTCGGCCAGCA 61.283 57.895 7.54 7.54 39.79 4.41
2612 2706 1.520342 GCTAAGAGTCGGCCAGCAG 60.520 63.158 2.24 0.00 32.46 4.24
2613 2707 1.949847 GCTAAGAGTCGGCCAGCAGA 61.950 60.000 2.24 0.00 32.46 4.26
2614 2708 0.749649 CTAAGAGTCGGCCAGCAGAT 59.250 55.000 2.24 0.00 0.00 2.90
2615 2709 0.747255 TAAGAGTCGGCCAGCAGATC 59.253 55.000 2.24 0.00 0.00 2.75
2616 2710 1.260538 AAGAGTCGGCCAGCAGATCA 61.261 55.000 2.24 0.00 0.00 2.92
2617 2711 1.047596 AGAGTCGGCCAGCAGATCAT 61.048 55.000 2.24 0.00 0.00 2.45
2618 2712 0.179062 GAGTCGGCCAGCAGATCATT 60.179 55.000 2.24 0.00 0.00 2.57
2619 2713 0.254178 AGTCGGCCAGCAGATCATTT 59.746 50.000 2.24 0.00 0.00 2.32
2620 2714 1.098050 GTCGGCCAGCAGATCATTTT 58.902 50.000 2.24 0.00 0.00 1.82
2621 2715 1.064654 GTCGGCCAGCAGATCATTTTC 59.935 52.381 2.24 0.00 0.00 2.29
2622 2716 1.097232 CGGCCAGCAGATCATTTTCA 58.903 50.000 2.24 0.00 0.00 2.69
2623 2717 1.473677 CGGCCAGCAGATCATTTTCAA 59.526 47.619 2.24 0.00 0.00 2.69
2624 2718 2.094597 CGGCCAGCAGATCATTTTCAAA 60.095 45.455 2.24 0.00 0.00 2.69
2625 2719 3.614630 CGGCCAGCAGATCATTTTCAAAA 60.615 43.478 2.24 0.00 0.00 2.44
2626 2720 4.317488 GGCCAGCAGATCATTTTCAAAAA 58.683 39.130 0.00 0.00 0.00 1.94
2642 2736 2.094904 AAAAATCATCCGGGTCGCG 58.905 52.632 0.00 0.00 0.00 5.87
2643 2737 0.391927 AAAAATCATCCGGGTCGCGA 60.392 50.000 3.71 3.71 0.00 5.87
2644 2738 0.810031 AAAATCATCCGGGTCGCGAG 60.810 55.000 10.24 0.00 0.00 5.03
2645 2739 3.792053 AATCATCCGGGTCGCGAGC 62.792 63.158 29.18 29.18 0.00 5.03
2653 2747 3.195698 GGTCGCGAGCCATCCAAC 61.196 66.667 27.12 3.43 0.00 3.77
2654 2748 3.195698 GTCGCGAGCCATCCAACC 61.196 66.667 10.24 0.00 0.00 3.77
2655 2749 4.812476 TCGCGAGCCATCCAACCG 62.812 66.667 3.71 0.00 0.00 4.44
2658 2752 4.856801 CGAGCCATCCAACCGGGG 62.857 72.222 6.32 0.00 37.22 5.73
2659 2753 3.728373 GAGCCATCCAACCGGGGT 61.728 66.667 6.32 0.00 37.22 4.95
2660 2754 2.285818 AGCCATCCAACCGGGGTA 60.286 61.111 6.32 0.00 37.22 3.69
2661 2755 2.192175 GCCATCCAACCGGGGTAG 59.808 66.667 6.32 0.00 37.22 3.18
2662 2756 2.372074 GCCATCCAACCGGGGTAGA 61.372 63.158 6.32 0.00 37.22 2.59
2663 2757 1.830145 CCATCCAACCGGGGTAGAG 59.170 63.158 6.32 0.00 37.22 2.43
2664 2758 0.981277 CCATCCAACCGGGGTAGAGT 60.981 60.000 6.32 0.00 37.22 3.24
2665 2759 0.464452 CATCCAACCGGGGTAGAGTC 59.536 60.000 6.32 0.00 37.22 3.36
2666 2760 0.690077 ATCCAACCGGGGTAGAGTCC 60.690 60.000 6.32 0.00 37.22 3.85
2667 2761 2.718073 CCAACCGGGGTAGAGTCCG 61.718 68.421 6.32 0.00 45.29 4.79
2668 2762 1.980772 CAACCGGGGTAGAGTCCGT 60.981 63.158 6.32 0.00 44.32 4.69
2669 2763 1.228988 AACCGGGGTAGAGTCCGTT 60.229 57.895 6.32 0.00 44.32 4.44
2670 2764 1.253593 AACCGGGGTAGAGTCCGTTC 61.254 60.000 6.32 0.00 44.32 3.95
2671 2765 2.421399 CCGGGGTAGAGTCCGTTCC 61.421 68.421 0.00 0.00 44.32 3.62
2672 2766 2.421399 CGGGGTAGAGTCCGTTCCC 61.421 68.421 0.00 0.00 41.23 3.97
2673 2767 3.626394 GGGTAGAGTCCGTTCCCC 58.374 66.667 0.00 0.00 32.66 4.81
2674 2768 1.001376 GGGTAGAGTCCGTTCCCCT 59.999 63.158 0.00 0.00 32.66 4.79
2675 2769 0.616964 GGGTAGAGTCCGTTCCCCTT 60.617 60.000 0.00 0.00 32.66 3.95
2676 2770 1.273759 GGTAGAGTCCGTTCCCCTTT 58.726 55.000 0.00 0.00 0.00 3.11
2677 2771 1.066358 GGTAGAGTCCGTTCCCCTTTG 60.066 57.143 0.00 0.00 0.00 2.77
2678 2772 0.611714 TAGAGTCCGTTCCCCTTTGC 59.388 55.000 0.00 0.00 0.00 3.68
2679 2773 1.072505 GAGTCCGTTCCCCTTTGCA 59.927 57.895 0.00 0.00 0.00 4.08
2680 2774 0.536460 GAGTCCGTTCCCCTTTGCAA 60.536 55.000 0.00 0.00 0.00 4.08
2681 2775 0.822121 AGTCCGTTCCCCTTTGCAAC 60.822 55.000 0.00 0.00 0.00 4.17
2682 2776 1.104577 GTCCGTTCCCCTTTGCAACA 61.105 55.000 0.00 0.00 0.00 3.33
2683 2777 0.395862 TCCGTTCCCCTTTGCAACAA 60.396 50.000 0.00 0.00 0.00 2.83
2684 2778 0.031994 CCGTTCCCCTTTGCAACAAG 59.968 55.000 0.00 0.00 0.00 3.16
2685 2779 1.028905 CGTTCCCCTTTGCAACAAGA 58.971 50.000 0.00 0.00 0.00 3.02
2686 2780 1.269051 CGTTCCCCTTTGCAACAAGAC 60.269 52.381 0.00 0.00 0.00 3.01
2687 2781 1.068588 GTTCCCCTTTGCAACAAGACC 59.931 52.381 0.00 0.00 0.00 3.85
2688 2782 0.469144 TCCCCTTTGCAACAAGACCC 60.469 55.000 0.00 0.00 0.00 4.46
2689 2783 0.469892 CCCCTTTGCAACAAGACCCT 60.470 55.000 0.00 0.00 0.00 4.34
2690 2784 1.413118 CCCTTTGCAACAAGACCCTT 58.587 50.000 0.00 0.00 0.00 3.95
2691 2785 1.069049 CCCTTTGCAACAAGACCCTTG 59.931 52.381 0.00 5.26 0.00 3.61
2692 2786 1.756538 CCTTTGCAACAAGACCCTTGT 59.243 47.619 0.00 6.53 0.00 3.16
2693 2787 2.168313 CCTTTGCAACAAGACCCTTGTT 59.832 45.455 16.62 16.62 42.75 2.83
2700 2794 4.486125 AACAAGACCCTTGTTGCAATTT 57.514 36.364 20.27 0.00 40.70 1.82
2701 2795 4.058721 ACAAGACCCTTGTTGCAATTTC 57.941 40.909 0.59 0.00 28.73 2.17
2702 2796 3.450457 ACAAGACCCTTGTTGCAATTTCA 59.550 39.130 0.59 0.00 28.73 2.69
2703 2797 4.081198 ACAAGACCCTTGTTGCAATTTCAA 60.081 37.500 0.59 1.19 28.73 2.69
2704 2798 4.058721 AGACCCTTGTTGCAATTTCAAC 57.941 40.909 13.23 13.23 44.80 3.18
2713 2807 5.989551 GTTGCAATTTCAACATGGAACTT 57.010 34.783 14.91 0.00 44.18 2.66
2714 2808 5.740406 GTTGCAATTTCAACATGGAACTTG 58.260 37.500 14.91 4.28 44.18 3.16
2715 2809 4.378774 TGCAATTTCAACATGGAACTTGG 58.621 39.130 13.06 1.49 37.69 3.61
2716 2810 4.141756 TGCAATTTCAACATGGAACTTGGT 60.142 37.500 13.06 0.00 37.69 3.67
2717 2811 4.448732 GCAATTTCAACATGGAACTTGGTC 59.551 41.667 13.06 0.00 37.69 4.02
2718 2812 4.871933 ATTTCAACATGGAACTTGGTCC 57.128 40.909 0.00 0.00 38.27 4.46
2719 2813 1.890876 TCAACATGGAACTTGGTCCG 58.109 50.000 0.00 0.00 40.96 4.79
2720 2814 1.418264 TCAACATGGAACTTGGTCCGA 59.582 47.619 0.00 0.00 40.96 4.55
2721 2815 2.158740 TCAACATGGAACTTGGTCCGAA 60.159 45.455 0.00 0.00 40.96 4.30
2722 2816 2.621055 CAACATGGAACTTGGTCCGAAA 59.379 45.455 0.00 0.00 40.96 3.46
2723 2817 2.938838 ACATGGAACTTGGTCCGAAAA 58.061 42.857 0.00 0.00 40.96 2.29
2724 2818 2.884639 ACATGGAACTTGGTCCGAAAAG 59.115 45.455 0.00 0.00 40.96 2.27
2725 2819 1.314730 TGGAACTTGGTCCGAAAAGC 58.685 50.000 0.00 0.00 40.96 3.51
2726 2820 1.314730 GGAACTTGGTCCGAAAAGCA 58.685 50.000 0.00 0.00 0.00 3.91
2727 2821 1.886542 GGAACTTGGTCCGAAAAGCAT 59.113 47.619 0.00 0.00 0.00 3.79
2728 2822 2.095212 GGAACTTGGTCCGAAAAGCATC 60.095 50.000 0.00 0.00 0.00 3.91
2729 2823 2.270352 ACTTGGTCCGAAAAGCATCA 57.730 45.000 0.00 0.00 0.00 3.07
2730 2824 1.880027 ACTTGGTCCGAAAAGCATCAC 59.120 47.619 0.00 0.00 0.00 3.06
2731 2825 1.200020 CTTGGTCCGAAAAGCATCACC 59.800 52.381 0.00 0.00 0.00 4.02
2732 2826 0.953471 TGGTCCGAAAAGCATCACCG 60.953 55.000 0.00 0.00 0.00 4.94
2733 2827 0.672401 GGTCCGAAAAGCATCACCGA 60.672 55.000 0.00 0.00 0.00 4.69
2734 2828 1.369625 GTCCGAAAAGCATCACCGAT 58.630 50.000 0.00 0.00 0.00 4.18
2735 2829 1.737793 GTCCGAAAAGCATCACCGATT 59.262 47.619 0.00 0.00 0.00 3.34
2736 2830 2.006888 TCCGAAAAGCATCACCGATTC 58.993 47.619 0.00 0.00 0.00 2.52
2737 2831 1.737236 CCGAAAAGCATCACCGATTCA 59.263 47.619 0.00 0.00 0.00 2.57
2738 2832 2.476185 CCGAAAAGCATCACCGATTCAC 60.476 50.000 0.00 0.00 0.00 3.18
2739 2833 2.774007 GAAAAGCATCACCGATTCACG 58.226 47.619 0.00 0.00 42.18 4.35
2748 2842 2.776072 CGATTCACGGCCGTCAAC 59.224 61.111 31.80 15.85 38.46 3.18
2749 2843 2.776072 GATTCACGGCCGTCAACG 59.224 61.111 31.80 18.24 39.44 4.10
2750 2844 2.025418 GATTCACGGCCGTCAACGT 61.025 57.895 31.80 8.08 45.25 3.99
2751 2845 1.952266 GATTCACGGCCGTCAACGTC 61.952 60.000 31.80 14.52 42.04 4.34
2752 2846 2.702751 ATTCACGGCCGTCAACGTCA 62.703 55.000 31.80 0.00 42.04 4.35
2753 2847 3.698463 CACGGCCGTCAACGTCAC 61.698 66.667 31.80 0.00 42.04 3.67
2754 2848 4.955774 ACGGCCGTCAACGTCACC 62.956 66.667 28.70 0.00 39.40 4.02
2755 2849 4.953868 CGGCCGTCAACGTCACCA 62.954 66.667 19.50 0.00 37.74 4.17
2756 2850 2.358247 GGCCGTCAACGTCACCAT 60.358 61.111 1.48 0.00 37.74 3.55
2757 2851 1.964373 GGCCGTCAACGTCACCATT 60.964 57.895 1.48 0.00 37.74 3.16
2758 2852 1.206578 GCCGTCAACGTCACCATTG 59.793 57.895 1.48 0.00 37.74 2.82
2759 2853 1.206578 CCGTCAACGTCACCATTGC 59.793 57.895 1.48 0.00 37.74 3.56
2760 2854 1.502990 CCGTCAACGTCACCATTGCA 61.503 55.000 1.48 0.00 37.74 4.08
2761 2855 0.306228 CGTCAACGTCACCATTGCAA 59.694 50.000 0.00 0.00 34.11 4.08
2762 2856 1.069296 CGTCAACGTCACCATTGCAAT 60.069 47.619 5.99 5.99 34.11 3.56
2763 2857 2.318578 GTCAACGTCACCATTGCAATG 58.681 47.619 28.91 28.91 36.17 2.82
2776 2870 5.319140 CATTGCAATGGACAAGAAGATGA 57.681 39.130 28.34 0.00 32.78 2.92
2777 2871 5.340803 CATTGCAATGGACAAGAAGATGAG 58.659 41.667 28.34 0.00 32.78 2.90
2778 2872 3.349927 TGCAATGGACAAGAAGATGAGG 58.650 45.455 0.00 0.00 0.00 3.86
2779 2873 2.686915 GCAATGGACAAGAAGATGAGGG 59.313 50.000 0.00 0.00 0.00 4.30
2780 2874 3.285484 CAATGGACAAGAAGATGAGGGG 58.715 50.000 0.00 0.00 0.00 4.79
2781 2875 2.342406 TGGACAAGAAGATGAGGGGA 57.658 50.000 0.00 0.00 0.00 4.81
2782 2876 2.191400 TGGACAAGAAGATGAGGGGAG 58.809 52.381 0.00 0.00 0.00 4.30
2783 2877 1.488393 GGACAAGAAGATGAGGGGAGG 59.512 57.143 0.00 0.00 0.00 4.30
2784 2878 2.472029 GACAAGAAGATGAGGGGAGGA 58.528 52.381 0.00 0.00 0.00 3.71
2785 2879 2.433970 GACAAGAAGATGAGGGGAGGAG 59.566 54.545 0.00 0.00 0.00 3.69
2786 2880 2.045047 ACAAGAAGATGAGGGGAGGAGA 59.955 50.000 0.00 0.00 0.00 3.71
2787 2881 2.433970 CAAGAAGATGAGGGGAGGAGAC 59.566 54.545 0.00 0.00 0.00 3.36
2788 2882 1.648568 AGAAGATGAGGGGAGGAGACA 59.351 52.381 0.00 0.00 0.00 3.41
2789 2883 2.038659 GAAGATGAGGGGAGGAGACAG 58.961 57.143 0.00 0.00 0.00 3.51
2790 2884 0.264359 AGATGAGGGGAGGAGACAGG 59.736 60.000 0.00 0.00 0.00 4.00
2791 2885 0.762461 GATGAGGGGAGGAGACAGGG 60.762 65.000 0.00 0.00 0.00 4.45
2792 2886 2.041405 GAGGGGAGGAGACAGGGG 60.041 72.222 0.00 0.00 0.00 4.79
2793 2887 2.540910 AGGGGAGGAGACAGGGGA 60.541 66.667 0.00 0.00 0.00 4.81
2794 2888 1.949449 AGGGGAGGAGACAGGGGAT 60.949 63.158 0.00 0.00 0.00 3.85
2795 2889 1.004891 GGGGAGGAGACAGGGGATT 59.995 63.158 0.00 0.00 0.00 3.01
2796 2890 1.348775 GGGGAGGAGACAGGGGATTG 61.349 65.000 0.00 0.00 0.00 2.67
2797 2891 1.348775 GGGAGGAGACAGGGGATTGG 61.349 65.000 0.00 0.00 0.00 3.16
2798 2892 0.326618 GGAGGAGACAGGGGATTGGA 60.327 60.000 0.00 0.00 0.00 3.53
2799 2893 1.584724 GAGGAGACAGGGGATTGGAA 58.415 55.000 0.00 0.00 0.00 3.53
2800 2894 1.488393 GAGGAGACAGGGGATTGGAAG 59.512 57.143 0.00 0.00 0.00 3.46
2801 2895 0.106967 GGAGACAGGGGATTGGAAGC 60.107 60.000 0.00 0.00 0.00 3.86
2802 2896 0.915364 GAGACAGGGGATTGGAAGCT 59.085 55.000 0.00 0.00 0.00 3.74
2803 2897 0.622665 AGACAGGGGATTGGAAGCTG 59.377 55.000 0.00 0.00 0.00 4.24
2804 2898 1.000396 ACAGGGGATTGGAAGCTGC 60.000 57.895 0.00 0.00 0.00 5.25
2805 2899 1.755783 CAGGGGATTGGAAGCTGCC 60.756 63.158 2.64 2.64 0.00 4.85
2806 2900 2.240918 AGGGGATTGGAAGCTGCCA 61.241 57.895 10.33 10.33 35.78 4.92
2807 2901 2.054453 GGGGATTGGAAGCTGCCAC 61.054 63.158 15.07 2.09 37.75 5.01
2808 2902 2.054453 GGGATTGGAAGCTGCCACC 61.054 63.158 15.07 12.92 37.75 4.61
2809 2903 1.304381 GGATTGGAAGCTGCCACCA 60.304 57.895 15.07 0.00 37.75 4.17
2810 2904 1.598701 GGATTGGAAGCTGCCACCAC 61.599 60.000 15.07 7.71 37.75 4.16
2811 2905 1.598701 GATTGGAAGCTGCCACCACC 61.599 60.000 15.07 0.00 37.75 4.61
2812 2906 4.641645 TGGAAGCTGCCACCACCG 62.642 66.667 10.33 0.00 31.66 4.94
2830 2924 4.363990 CGTGGCGACTGCTCAGGT 62.364 66.667 0.00 0.00 42.25 4.00
2831 2925 2.740055 GTGGCGACTGCTCAGGTG 60.740 66.667 1.66 0.00 42.25 4.00
2832 2926 4.687215 TGGCGACTGCTCAGGTGC 62.687 66.667 1.66 4.71 42.25 5.01
2834 2928 4.724602 GCGACTGCTCAGGTGCGA 62.725 66.667 11.27 0.00 38.39 5.10
2835 2929 2.049156 CGACTGCTCAGGTGCGAA 60.049 61.111 1.66 0.00 35.36 4.70
2836 2930 1.664649 CGACTGCTCAGGTGCGAAA 60.665 57.895 1.66 0.00 35.36 3.46
2837 2931 1.862806 GACTGCTCAGGTGCGAAAC 59.137 57.895 1.66 0.00 35.36 2.78
2838 2932 1.891060 GACTGCTCAGGTGCGAAACG 61.891 60.000 1.66 0.00 35.36 3.60
2839 2933 1.664649 CTGCTCAGGTGCGAAACGA 60.665 57.895 0.00 0.00 35.36 3.85
2840 2934 1.221466 CTGCTCAGGTGCGAAACGAA 61.221 55.000 0.00 0.00 35.36 3.85
2841 2935 0.602638 TGCTCAGGTGCGAAACGAAT 60.603 50.000 0.00 0.00 35.36 3.34
2842 2936 0.095417 GCTCAGGTGCGAAACGAATC 59.905 55.000 0.00 0.00 0.00 2.52
2843 2937 0.366871 CTCAGGTGCGAAACGAATCG 59.633 55.000 0.00 0.00 45.41 3.34
2844 2938 1.011968 TCAGGTGCGAAACGAATCGG 61.012 55.000 7.80 0.00 42.93 4.18
2845 2939 1.005394 AGGTGCGAAACGAATCGGT 60.005 52.632 7.80 0.00 42.93 4.69
2846 2940 1.012486 AGGTGCGAAACGAATCGGTC 61.012 55.000 7.80 3.00 42.93 4.79
2847 2941 1.286354 GGTGCGAAACGAATCGGTCA 61.286 55.000 7.80 0.00 42.93 4.02
2848 2942 0.093026 GTGCGAAACGAATCGGTCAG 59.907 55.000 7.80 0.00 42.93 3.51
2849 2943 1.011968 TGCGAAACGAATCGGTCAGG 61.012 55.000 7.80 0.00 42.93 3.86
2850 2944 1.012486 GCGAAACGAATCGGTCAGGT 61.012 55.000 7.80 0.00 42.93 4.00
2851 2945 0.989890 CGAAACGAATCGGTCAGGTC 59.010 55.000 7.80 0.00 39.12 3.85
2852 2946 0.989890 GAAACGAATCGGTCAGGTCG 59.010 55.000 7.80 0.00 39.37 4.79
2853 2947 0.599558 AAACGAATCGGTCAGGTCGA 59.400 50.000 7.80 0.00 41.04 4.20
2854 2948 0.170561 AACGAATCGGTCAGGTCGAG 59.829 55.000 7.80 0.00 40.09 4.04
2855 2949 1.064296 CGAATCGGTCAGGTCGAGG 59.936 63.158 0.00 0.00 40.09 4.63
2856 2950 1.227002 GAATCGGTCAGGTCGAGGC 60.227 63.158 0.00 0.00 40.09 4.70
2857 2951 1.945354 GAATCGGTCAGGTCGAGGCA 61.945 60.000 0.00 0.00 40.09 4.75
2858 2952 2.227089 AATCGGTCAGGTCGAGGCAC 62.227 60.000 0.00 0.00 40.09 5.01
2860 2954 2.932234 CGGTCAGGTCGAGGCACTT 61.932 63.158 0.00 0.00 41.55 3.16
2861 2955 1.374758 GGTCAGGTCGAGGCACTTG 60.375 63.158 0.00 0.00 41.55 3.16
2867 2961 2.973899 TCGAGGCACTTGAGAGGC 59.026 61.111 0.00 0.00 45.28 4.70
2868 2962 2.507992 CGAGGCACTTGAGAGGCG 60.508 66.667 0.00 0.00 44.22 5.52
2869 2963 2.125350 GAGGCACTTGAGAGGCGG 60.125 66.667 0.00 0.00 41.55 6.13
2870 2964 4.400961 AGGCACTTGAGAGGCGGC 62.401 66.667 0.00 0.00 36.39 6.53
2872 2966 4.742201 GCACTTGAGAGGCGGCGA 62.742 66.667 12.98 0.00 0.00 5.54
2873 2967 2.811317 CACTTGAGAGGCGGCGAC 60.811 66.667 12.98 8.50 0.00 5.19
2874 2968 2.992114 ACTTGAGAGGCGGCGACT 60.992 61.111 18.97 18.97 0.00 4.18
2875 2969 2.262915 CTTGAGAGGCGGCGACTT 59.737 61.111 20.16 6.98 0.00 3.01
2876 2970 1.807573 CTTGAGAGGCGGCGACTTC 60.808 63.158 20.16 16.94 0.00 3.01
2877 2971 2.492449 CTTGAGAGGCGGCGACTTCA 62.492 60.000 20.16 19.46 0.00 3.02
2878 2972 1.888436 TTGAGAGGCGGCGACTTCAT 61.888 55.000 20.16 6.17 0.00 2.57
2879 2973 1.880340 GAGAGGCGGCGACTTCATG 60.880 63.158 20.16 0.00 0.00 3.07
2880 2974 2.892425 GAGGCGGCGACTTCATGG 60.892 66.667 20.16 0.00 0.00 3.66
2886 2980 4.301505 GCGACTTCATGGCCAGAA 57.698 55.556 13.05 13.93 0.00 3.02
2887 2981 2.785868 GCGACTTCATGGCCAGAAT 58.214 52.632 13.05 5.74 0.00 2.40
2888 2982 1.098050 GCGACTTCATGGCCAGAATT 58.902 50.000 13.05 9.38 0.00 2.17
2889 2983 1.474077 GCGACTTCATGGCCAGAATTT 59.526 47.619 13.05 5.39 0.00 1.82
2890 2984 2.478539 GCGACTTCATGGCCAGAATTTC 60.479 50.000 13.05 12.44 0.00 2.17
2891 2985 2.223112 CGACTTCATGGCCAGAATTTCG 60.223 50.000 13.05 18.82 0.00 3.46
2892 2986 3.009723 GACTTCATGGCCAGAATTTCGA 58.990 45.455 13.05 0.00 0.00 3.71
2893 2987 3.012518 ACTTCATGGCCAGAATTTCGAG 58.987 45.455 13.05 4.88 0.00 4.04
2894 2988 2.042686 TCATGGCCAGAATTTCGAGG 57.957 50.000 13.05 6.58 0.00 4.63
2895 2989 0.383231 CATGGCCAGAATTTCGAGGC 59.617 55.000 20.82 20.82 40.24 4.70
2897 2991 3.514417 GCCAGAATTTCGAGGCCC 58.486 61.111 19.21 0.00 36.76 5.80
2898 2992 2.121538 GCCAGAATTTCGAGGCCCC 61.122 63.158 19.21 0.00 36.76 5.80
2899 2993 1.302949 CCAGAATTTCGAGGCCCCA 59.697 57.895 0.00 0.00 0.00 4.96
2900 2994 0.323360 CCAGAATTTCGAGGCCCCAA 60.323 55.000 0.00 0.00 0.00 4.12
2901 2995 0.811281 CAGAATTTCGAGGCCCCAAC 59.189 55.000 0.00 0.00 0.00 3.77
2902 2996 0.323451 AGAATTTCGAGGCCCCAACC 60.323 55.000 0.00 0.00 0.00 3.77
2903 2997 0.323451 GAATTTCGAGGCCCCAACCT 60.323 55.000 0.00 0.00 45.04 3.50
2909 3003 2.121506 AGGCCCCAACCTCCTCAA 60.122 61.111 0.00 0.00 33.62 3.02
2910 3004 1.544917 AGGCCCCAACCTCCTCAAT 60.545 57.895 0.00 0.00 33.62 2.57
2911 3005 1.380380 GGCCCCAACCTCCTCAATG 60.380 63.158 0.00 0.00 0.00 2.82
2912 3006 2.054453 GCCCCAACCTCCTCAATGC 61.054 63.158 0.00 0.00 0.00 3.56
2913 3007 1.380380 CCCCAACCTCCTCAATGCC 60.380 63.158 0.00 0.00 0.00 4.40
2914 3008 1.693640 CCCAACCTCCTCAATGCCT 59.306 57.895 0.00 0.00 0.00 4.75
2915 3009 0.394899 CCCAACCTCCTCAATGCCTC 60.395 60.000 0.00 0.00 0.00 4.70
2916 3010 0.622665 CCAACCTCCTCAATGCCTCT 59.377 55.000 0.00 0.00 0.00 3.69
2917 3011 1.839994 CCAACCTCCTCAATGCCTCTA 59.160 52.381 0.00 0.00 0.00 2.43
2918 3012 2.158842 CCAACCTCCTCAATGCCTCTAG 60.159 54.545 0.00 0.00 0.00 2.43
2919 3013 2.768527 CAACCTCCTCAATGCCTCTAGA 59.231 50.000 0.00 0.00 0.00 2.43
2920 3014 3.342926 ACCTCCTCAATGCCTCTAGAT 57.657 47.619 0.00 0.00 0.00 1.98
2921 3015 3.238597 ACCTCCTCAATGCCTCTAGATC 58.761 50.000 0.00 0.00 0.00 2.75
2922 3016 3.237746 CCTCCTCAATGCCTCTAGATCA 58.762 50.000 0.00 0.00 0.00 2.92
2923 3017 3.645212 CCTCCTCAATGCCTCTAGATCAA 59.355 47.826 0.00 0.00 0.00 2.57
2924 3018 4.286549 CCTCCTCAATGCCTCTAGATCAAT 59.713 45.833 0.00 0.00 0.00 2.57
2925 3019 5.483231 CCTCCTCAATGCCTCTAGATCAATA 59.517 44.000 0.00 0.00 0.00 1.90
2926 3020 6.352016 TCCTCAATGCCTCTAGATCAATAC 57.648 41.667 0.00 0.00 0.00 1.89
2927 3021 5.047731 TCCTCAATGCCTCTAGATCAATACG 60.048 44.000 0.00 0.00 0.00 3.06
2928 3022 5.139435 TCAATGCCTCTAGATCAATACGG 57.861 43.478 0.00 0.00 0.00 4.02
2929 3023 4.021104 TCAATGCCTCTAGATCAATACGGG 60.021 45.833 0.00 0.00 0.00 5.28
2930 3024 3.238788 TGCCTCTAGATCAATACGGGA 57.761 47.619 0.00 0.00 0.00 5.14
2931 3025 3.572642 TGCCTCTAGATCAATACGGGAA 58.427 45.455 0.00 0.00 0.00 3.97
2932 3026 3.964688 TGCCTCTAGATCAATACGGGAAA 59.035 43.478 0.00 0.00 0.00 3.13
2933 3027 4.407621 TGCCTCTAGATCAATACGGGAAAA 59.592 41.667 0.00 0.00 0.00 2.29
2934 3028 4.991687 GCCTCTAGATCAATACGGGAAAAG 59.008 45.833 0.00 0.00 0.00 2.27
2935 3029 5.542779 CCTCTAGATCAATACGGGAAAAGG 58.457 45.833 0.00 0.00 0.00 3.11
2936 3030 5.511545 CCTCTAGATCAATACGGGAAAAGGG 60.512 48.000 0.00 0.00 0.00 3.95
2937 3031 5.213519 TCTAGATCAATACGGGAAAAGGGA 58.786 41.667 0.00 0.00 0.00 4.20
2938 3032 4.855298 AGATCAATACGGGAAAAGGGAA 57.145 40.909 0.00 0.00 0.00 3.97
2939 3033 5.187621 AGATCAATACGGGAAAAGGGAAA 57.812 39.130 0.00 0.00 0.00 3.13
2940 3034 5.193679 AGATCAATACGGGAAAAGGGAAAG 58.806 41.667 0.00 0.00 0.00 2.62
2941 3035 3.692690 TCAATACGGGAAAAGGGAAAGG 58.307 45.455 0.00 0.00 0.00 3.11
3219 3313 7.841915 TTTTTGAAGTTTTAAGGCCTCTTTG 57.158 32.000 5.23 0.00 34.59 2.77
3220 3314 6.783708 TTTGAAGTTTTAAGGCCTCTTTGA 57.216 33.333 5.23 0.00 34.59 2.69
3221 3315 6.976934 TTGAAGTTTTAAGGCCTCTTTGAT 57.023 33.333 5.23 0.00 34.59 2.57
3222 3316 6.976934 TGAAGTTTTAAGGCCTCTTTGATT 57.023 33.333 5.23 0.00 34.59 2.57
3223 3317 6.981722 TGAAGTTTTAAGGCCTCTTTGATTC 58.018 36.000 5.23 8.19 34.59 2.52
3224 3318 5.629079 AGTTTTAAGGCCTCTTTGATTCG 57.371 39.130 5.23 0.00 34.59 3.34
3225 3319 4.082733 AGTTTTAAGGCCTCTTTGATTCGC 60.083 41.667 5.23 0.00 34.59 4.70
3226 3320 2.779755 TAAGGCCTCTTTGATTCGCA 57.220 45.000 5.23 0.00 34.59 5.10
3227 3321 1.457346 AAGGCCTCTTTGATTCGCAG 58.543 50.000 5.23 0.00 0.00 5.18
3228 3322 0.393537 AGGCCTCTTTGATTCGCAGG 60.394 55.000 0.00 0.00 0.00 4.85
3229 3323 0.392998 GGCCTCTTTGATTCGCAGGA 60.393 55.000 0.00 0.00 0.00 3.86
3230 3324 1.673168 GCCTCTTTGATTCGCAGGAT 58.327 50.000 0.00 0.00 0.00 3.24
3231 3325 2.019984 GCCTCTTTGATTCGCAGGATT 58.980 47.619 0.00 0.00 0.00 3.01
3232 3326 2.223433 GCCTCTTTGATTCGCAGGATTG 60.223 50.000 0.00 0.00 0.00 2.67
3233 3327 3.012518 CCTCTTTGATTCGCAGGATTGT 58.987 45.455 0.00 0.00 0.00 2.71
3234 3328 4.191544 CCTCTTTGATTCGCAGGATTGTA 58.808 43.478 0.00 0.00 0.00 2.41
3235 3329 4.635765 CCTCTTTGATTCGCAGGATTGTAA 59.364 41.667 0.00 0.00 0.00 2.41
3236 3330 5.123820 CCTCTTTGATTCGCAGGATTGTAAA 59.876 40.000 0.00 0.00 0.00 2.01
3237 3331 6.349280 CCTCTTTGATTCGCAGGATTGTAAAA 60.349 38.462 0.00 0.00 0.00 1.52
3238 3332 6.976088 TCTTTGATTCGCAGGATTGTAAAAA 58.024 32.000 0.00 0.00 0.00 1.94
3239 3333 6.861055 TCTTTGATTCGCAGGATTGTAAAAAC 59.139 34.615 0.00 0.00 0.00 2.43
3240 3334 5.697473 TGATTCGCAGGATTGTAAAAACA 57.303 34.783 0.00 0.00 0.00 2.83
3241 3335 6.266168 TGATTCGCAGGATTGTAAAAACAT 57.734 33.333 0.00 0.00 0.00 2.71
3242 3336 6.092092 TGATTCGCAGGATTGTAAAAACATG 58.908 36.000 0.00 0.00 0.00 3.21
3243 3337 4.433186 TCGCAGGATTGTAAAAACATGG 57.567 40.909 0.00 0.00 0.00 3.66
3244 3338 3.192422 TCGCAGGATTGTAAAAACATGGG 59.808 43.478 0.00 0.00 34.44 4.00
3245 3339 3.192422 CGCAGGATTGTAAAAACATGGGA 59.808 43.478 0.00 0.00 34.81 4.37
3246 3340 4.321601 CGCAGGATTGTAAAAACATGGGAA 60.322 41.667 0.00 0.00 34.81 3.97
3247 3341 5.624281 CGCAGGATTGTAAAAACATGGGAAT 60.624 40.000 0.00 0.00 34.81 3.01
3248 3342 6.405286 CGCAGGATTGTAAAAACATGGGAATA 60.405 38.462 0.00 0.00 34.81 1.75
3249 3343 6.980397 GCAGGATTGTAAAAACATGGGAATAG 59.020 38.462 0.00 0.00 0.00 1.73
3250 3344 7.491682 CAGGATTGTAAAAACATGGGAATAGG 58.508 38.462 0.00 0.00 0.00 2.57
3251 3345 7.341769 CAGGATTGTAAAAACATGGGAATAGGA 59.658 37.037 0.00 0.00 0.00 2.94
3252 3346 7.898636 AGGATTGTAAAAACATGGGAATAGGAA 59.101 33.333 0.00 0.00 0.00 3.36
3253 3347 8.536175 GGATTGTAAAAACATGGGAATAGGAAA 58.464 33.333 0.00 0.00 0.00 3.13
3254 3348 9.936759 GATTGTAAAAACATGGGAATAGGAAAA 57.063 29.630 0.00 0.00 0.00 2.29
3256 3350 9.549078 TTGTAAAAACATGGGAATAGGAAAAAC 57.451 29.630 0.00 0.00 0.00 2.43
3257 3351 8.705594 TGTAAAAACATGGGAATAGGAAAAACA 58.294 29.630 0.00 0.00 0.00 2.83
3258 3352 9.719355 GTAAAAACATGGGAATAGGAAAAACAT 57.281 29.630 0.00 0.00 0.00 2.71
3260 3354 9.942850 AAAAACATGGGAATAGGAAAAACATAG 57.057 29.630 0.00 0.00 0.00 2.23
3261 3355 7.660030 AACATGGGAATAGGAAAAACATAGG 57.340 36.000 0.00 0.00 0.00 2.57
3262 3356 6.980577 ACATGGGAATAGGAAAAACATAGGA 58.019 36.000 0.00 0.00 0.00 2.94
3263 3357 7.595488 ACATGGGAATAGGAAAAACATAGGAT 58.405 34.615 0.00 0.00 0.00 3.24
3264 3358 8.067488 ACATGGGAATAGGAAAAACATAGGATT 58.933 33.333 0.00 0.00 0.00 3.01
3265 3359 7.896383 TGGGAATAGGAAAAACATAGGATTG 57.104 36.000 0.00 0.00 0.00 2.67
3266 3360 7.647827 TGGGAATAGGAAAAACATAGGATTGA 58.352 34.615 0.00 0.00 0.00 2.57
3267 3361 8.119246 TGGGAATAGGAAAAACATAGGATTGAA 58.881 33.333 0.00 0.00 0.00 2.69
3268 3362 8.977412 GGGAATAGGAAAAACATAGGATTGAAA 58.023 33.333 0.00 0.00 0.00 2.69
3273 3367 8.421249 AGGAAAAACATAGGATTGAAATGTCA 57.579 30.769 0.00 0.00 32.80 3.58
3274 3368 9.039165 AGGAAAAACATAGGATTGAAATGTCAT 57.961 29.630 0.00 0.00 32.80 3.06
3275 3369 9.090692 GGAAAAACATAGGATTGAAATGTCATG 57.909 33.333 0.00 0.00 32.80 3.07
3276 3370 8.483307 AAAAACATAGGATTGAAATGTCATGC 57.517 30.769 0.00 0.00 32.80 4.06
3277 3371 7.414222 AAACATAGGATTGAAATGTCATGCT 57.586 32.000 0.00 0.00 32.80 3.79
3278 3372 6.630444 ACATAGGATTGAAATGTCATGCTC 57.370 37.500 0.00 0.00 32.48 4.26
3279 3373 6.124340 ACATAGGATTGAAATGTCATGCTCA 58.876 36.000 0.00 0.00 32.48 4.26
3280 3374 6.776116 ACATAGGATTGAAATGTCATGCTCAT 59.224 34.615 0.00 0.00 32.48 2.90
3281 3375 5.769484 AGGATTGAAATGTCATGCTCATC 57.231 39.130 4.24 0.00 32.48 2.92
3282 3376 5.446860 AGGATTGAAATGTCATGCTCATCT 58.553 37.500 4.24 0.00 32.48 2.90
3283 3377 5.531659 AGGATTGAAATGTCATGCTCATCTC 59.468 40.000 4.24 1.78 32.48 2.75
3284 3378 5.298527 GGATTGAAATGTCATGCTCATCTCA 59.701 40.000 3.70 3.70 32.48 3.27
3285 3379 6.183360 GGATTGAAATGTCATGCTCATCTCAA 60.183 38.462 16.04 16.04 36.91 3.02
3286 3380 6.769134 TTGAAATGTCATGCTCATCTCAAT 57.231 33.333 12.23 0.00 30.52 2.57
3287 3381 6.373186 TGAAATGTCATGCTCATCTCAATC 57.627 37.500 4.90 1.77 0.00 2.67
3288 3382 5.298527 TGAAATGTCATGCTCATCTCAATCC 59.701 40.000 4.90 0.00 0.00 3.01
3289 3383 4.708576 ATGTCATGCTCATCTCAATCCT 57.291 40.909 0.00 0.00 0.00 3.24
3290 3384 5.820404 ATGTCATGCTCATCTCAATCCTA 57.180 39.130 0.00 0.00 0.00 2.94
3291 3385 5.820404 TGTCATGCTCATCTCAATCCTAT 57.180 39.130 0.00 0.00 0.00 2.57
3292 3386 6.923199 TGTCATGCTCATCTCAATCCTATA 57.077 37.500 0.00 0.00 0.00 1.31
3293 3387 6.932947 TGTCATGCTCATCTCAATCCTATAG 58.067 40.000 0.00 0.00 0.00 1.31
3294 3388 6.070938 TGTCATGCTCATCTCAATCCTATAGG 60.071 42.308 13.07 13.07 0.00 2.57
3309 3403 6.609379 TCCTATAGGAGTTTAGGGTCTCTT 57.391 41.667 18.00 0.00 39.78 2.85
3310 3404 6.994582 TCCTATAGGAGTTTAGGGTCTCTTT 58.005 40.000 18.00 0.00 39.78 2.52
3311 3405 6.839657 TCCTATAGGAGTTTAGGGTCTCTTTG 59.160 42.308 18.00 0.00 39.78 2.77
3312 3406 6.839657 CCTATAGGAGTTTAGGGTCTCTTTGA 59.160 42.308 14.11 0.00 37.39 2.69
3313 3407 7.511028 CCTATAGGAGTTTAGGGTCTCTTTGAT 59.489 40.741 14.11 0.00 37.39 2.57
3314 3408 7.757242 ATAGGAGTTTAGGGTCTCTTTGATT 57.243 36.000 0.00 0.00 0.00 2.57
3315 3409 6.056090 AGGAGTTTAGGGTCTCTTTGATTC 57.944 41.667 0.00 0.00 0.00 2.52
3316 3410 5.548056 AGGAGTTTAGGGTCTCTTTGATTCA 59.452 40.000 0.00 0.00 0.00 2.57
3317 3411 6.044404 AGGAGTTTAGGGTCTCTTTGATTCAA 59.956 38.462 0.00 0.00 0.00 2.69
3318 3412 6.715264 GGAGTTTAGGGTCTCTTTGATTCAAA 59.285 38.462 11.19 11.19 0.00 2.69
3343 3437 9.759473 AAGGATTTTCATAAGATCTTTGAAGGA 57.241 29.630 14.36 13.99 31.54 3.36
3344 3438 9.933240 AGGATTTTCATAAGATCTTTGAAGGAT 57.067 29.630 14.36 17.05 31.54 3.24
3390 3484 9.123902 TCCTATGTTGATCATTTGATTTGTAGG 57.876 33.333 0.00 0.00 37.91 3.18
3391 3485 9.123902 CCTATGTTGATCATTTGATTTGTAGGA 57.876 33.333 0.00 0.00 37.91 2.94
3394 3488 9.811995 ATGTTGATCATTTGATTTGTAGGATTG 57.188 29.630 0.00 0.00 34.37 2.67
3395 3489 9.022884 TGTTGATCATTTGATTTGTAGGATTGA 57.977 29.630 0.00 0.00 34.37 2.57
3396 3490 9.859427 GTTGATCATTTGATTTGTAGGATTGAA 57.141 29.630 0.00 0.00 34.37 2.69
3399 3493 9.688592 GATCATTTGATTTGTAGGATTGAATCC 57.311 33.333 16.35 16.35 41.43 3.01
3444 3538 9.559958 GAATTCATTTGTACTACATTTCACAGG 57.440 33.333 0.00 0.00 0.00 4.00
3445 3539 8.862325 ATTCATTTGTACTACATTTCACAGGA 57.138 30.769 0.00 0.00 0.00 3.86
3446 3540 8.684386 TTCATTTGTACTACATTTCACAGGAA 57.316 30.769 0.00 0.00 0.00 3.36
3447 3541 8.862325 TCATTTGTACTACATTTCACAGGAAT 57.138 30.769 0.00 0.00 31.93 3.01
3448 3542 9.295825 TCATTTGTACTACATTTCACAGGAATT 57.704 29.630 0.00 0.00 31.93 2.17
3449 3543 9.559958 CATTTGTACTACATTTCACAGGAATTC 57.440 33.333 0.00 0.00 31.93 2.17
3450 3544 8.918202 TTTGTACTACATTTCACAGGAATTCT 57.082 30.769 5.23 0.00 31.93 2.40
3452 3546 9.653287 TTGTACTACATTTCACAGGAATTCTAG 57.347 33.333 5.23 0.84 31.93 2.43
3453 3547 7.764443 TGTACTACATTTCACAGGAATTCTAGC 59.236 37.037 5.23 0.00 31.93 3.42
3454 3548 6.711277 ACTACATTTCACAGGAATTCTAGCA 58.289 36.000 5.23 0.00 31.93 3.49
3455 3549 7.341805 ACTACATTTCACAGGAATTCTAGCAT 58.658 34.615 5.23 0.00 31.93 3.79
3456 3550 6.690194 ACATTTCACAGGAATTCTAGCATC 57.310 37.500 5.23 0.00 31.93 3.91
3457 3551 5.591877 ACATTTCACAGGAATTCTAGCATCC 59.408 40.000 5.23 1.29 31.93 3.51
3458 3552 4.842531 TTCACAGGAATTCTAGCATCCA 57.157 40.909 5.23 0.00 35.62 3.41
3459 3553 4.142609 TCACAGGAATTCTAGCATCCAC 57.857 45.455 5.23 0.00 35.62 4.02
3460 3554 3.776969 TCACAGGAATTCTAGCATCCACT 59.223 43.478 5.23 0.00 35.62 4.00
3461 3555 4.125703 CACAGGAATTCTAGCATCCACTC 58.874 47.826 5.23 0.00 35.62 3.51
3462 3556 3.776969 ACAGGAATTCTAGCATCCACTCA 59.223 43.478 5.23 0.00 35.62 3.41
3463 3557 4.225942 ACAGGAATTCTAGCATCCACTCAA 59.774 41.667 5.23 0.00 35.62 3.02
3464 3558 5.188434 CAGGAATTCTAGCATCCACTCAAA 58.812 41.667 5.23 0.00 35.62 2.69
3465 3559 5.065731 CAGGAATTCTAGCATCCACTCAAAC 59.934 44.000 5.23 0.00 35.62 2.93
3466 3560 4.336713 GGAATTCTAGCATCCACTCAAACC 59.663 45.833 5.23 0.00 33.30 3.27
3467 3561 4.851639 ATTCTAGCATCCACTCAAACCT 57.148 40.909 0.00 0.00 0.00 3.50
3468 3562 3.895232 TCTAGCATCCACTCAAACCTC 57.105 47.619 0.00 0.00 0.00 3.85
3469 3563 3.445008 TCTAGCATCCACTCAAACCTCT 58.555 45.455 0.00 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 1.076995 CTGGAAACCCGAATCCCCC 60.077 63.158 0.00 0.00 34.68 5.40
49 50 1.821136 GCCATTTCCACTTCCTCCTTG 59.179 52.381 0.00 0.00 0.00 3.61
124 125 1.201647 TCGACGAACTCCAGAATCCAC 59.798 52.381 0.00 0.00 0.00 4.02
358 359 1.106285 GCAGGGATAAGGGCAACTTG 58.894 55.000 3.41 0.00 40.37 3.16
444 466 9.838339 ATAGACTTAAACATCCAAACAGATAGG 57.162 33.333 0.00 0.00 0.00 2.57
472 494 5.664457 TGCTGGAAGTAGATAGATGTGTTG 58.336 41.667 0.00 0.00 35.30 3.33
512 536 6.507958 TCGATCTAGCTCATAAGGATCAAG 57.492 41.667 0.00 0.00 34.29 3.02
573 602 2.173569 GGCTAGATTGATCCAACCTGGT 59.826 50.000 0.00 0.00 39.03 4.00
574 603 2.173356 TGGCTAGATTGATCCAACCTGG 59.827 50.000 0.00 0.00 39.43 4.45
575 604 3.118112 ACTGGCTAGATTGATCCAACCTG 60.118 47.826 3.17 0.00 0.00 4.00
621 653 6.916360 ACATTGGGTTCATTAATCTGTTGT 57.084 33.333 0.00 0.00 0.00 3.32
789 823 0.464373 AGGTTGATATGCGGGCAGTG 60.464 55.000 0.00 0.00 0.00 3.66
799 833 4.790790 AGAGGAAGGGTTCAAGGTTGATAT 59.209 41.667 0.00 0.00 37.00 1.63
891 925 0.460284 AGGATTACTCTGCGTTGGCG 60.460 55.000 0.00 0.00 44.10 5.69
897 931 0.312416 CGAGGGAGGATTACTCTGCG 59.688 60.000 0.00 0.00 45.83 5.18
927 961 3.422303 TGCGCGATGCTCCACAAC 61.422 61.111 12.10 0.00 46.63 3.32
1095 1129 1.376037 CTTCGAGGGGCCTGTTGTC 60.376 63.158 0.84 0.00 0.00 3.18
1149 1183 3.151710 TACCTGGTCGCGGATGGG 61.152 66.667 6.13 6.91 0.00 4.00
1158 1192 4.814294 CCCGCGCAGTACCTGGTC 62.814 72.222 8.75 0.00 31.21 4.02
1208 1242 0.106519 GCTCAGGCTCTCCTCTCTCT 60.107 60.000 0.00 0.00 41.93 3.10
1209 1243 0.395586 TGCTCAGGCTCTCCTCTCTC 60.396 60.000 0.00 0.00 41.93 3.20
1212 1246 1.685421 GGTGCTCAGGCTCTCCTCT 60.685 63.158 0.00 0.00 41.93 3.69
1215 1249 2.899505 GAGGTGCTCAGGCTCTCC 59.100 66.667 0.00 0.00 39.59 3.71
2196 2256 2.879233 ATCGACACCGCAACCACCT 61.879 57.895 0.00 0.00 35.37 4.00
2197 2257 2.358247 ATCGACACCGCAACCACC 60.358 61.111 0.00 0.00 35.37 4.61
2198 2258 2.677003 CCATCGACACCGCAACCAC 61.677 63.158 0.00 0.00 35.37 4.16
2302 2366 4.847367 CCCATTCCTGCCCCAGCC 62.847 72.222 0.00 0.00 38.69 4.85
2304 2368 1.152368 GATCCCATTCCTGCCCCAG 59.848 63.158 0.00 0.00 0.00 4.45
2305 2369 1.000590 ATGATCCCATTCCTGCCCCA 61.001 55.000 0.00 0.00 0.00 4.96
2306 2370 1.075601 TATGATCCCATTCCTGCCCC 58.924 55.000 0.00 0.00 34.31 5.80
2307 2371 1.272147 GGTATGATCCCATTCCTGCCC 60.272 57.143 0.00 0.00 37.29 5.36
2311 2375 2.787956 TGGTGGTATGATCCCATTCCT 58.212 47.619 0.00 0.00 39.93 3.36
2312 2376 3.074390 TGATGGTGGTATGATCCCATTCC 59.926 47.826 1.12 0.00 37.81 3.01
2313 2377 4.371624 TGATGGTGGTATGATCCCATTC 57.628 45.455 1.12 0.00 37.81 2.67
2314 2378 5.327732 GAATGATGGTGGTATGATCCCATT 58.672 41.667 1.12 0.00 37.81 3.16
2316 2380 3.244526 CGAATGATGGTGGTATGATCCCA 60.245 47.826 0.00 0.00 0.00 4.37
2317 2381 3.338249 CGAATGATGGTGGTATGATCCC 58.662 50.000 0.00 0.00 0.00 3.85
2320 2384 3.668447 GAGCGAATGATGGTGGTATGAT 58.332 45.455 0.00 0.00 0.00 2.45
2322 2386 1.794701 CGAGCGAATGATGGTGGTATG 59.205 52.381 0.00 0.00 0.00 2.39
2323 2387 1.873903 GCGAGCGAATGATGGTGGTAT 60.874 52.381 0.00 0.00 0.00 2.73
2324 2388 0.529773 GCGAGCGAATGATGGTGGTA 60.530 55.000 0.00 0.00 0.00 3.25
2325 2389 1.815421 GCGAGCGAATGATGGTGGT 60.815 57.895 0.00 0.00 0.00 4.16
2328 2392 2.203070 GGGCGAGCGAATGATGGT 60.203 61.111 0.00 0.00 0.00 3.55
2329 2393 3.341043 CGGGCGAGCGAATGATGG 61.341 66.667 0.00 0.00 0.00 3.51
2331 2395 3.849951 ACCGGGCGAGCGAATGAT 61.850 61.111 6.32 0.00 0.00 2.45
2332 2396 4.812476 CACCGGGCGAGCGAATGA 62.812 66.667 6.32 0.00 0.00 2.57
2443 2523 2.493675 GGAGCTTTGACAAATCCCTTCC 59.506 50.000 8.76 2.17 0.00 3.46
2460 2542 1.694133 ATGAGCCTGCCTAGTGGAGC 61.694 60.000 0.00 0.00 34.57 4.70
2461 2543 0.106335 CATGAGCCTGCCTAGTGGAG 59.894 60.000 0.00 0.00 34.57 3.86
2516 2610 2.871022 TCTCTATTAGACACGCGAGGAC 59.129 50.000 15.93 4.87 0.00 3.85
2541 2635 1.868498 CATTGCCAGCTGGTTTGTTTG 59.132 47.619 32.81 17.68 37.57 2.93
2546 2640 3.947834 GAGTATACATTGCCAGCTGGTTT 59.052 43.478 32.81 15.76 37.57 3.27
2547 2641 3.545703 GAGTATACATTGCCAGCTGGTT 58.454 45.455 32.81 16.12 37.57 3.67
2548 2642 2.158755 GGAGTATACATTGCCAGCTGGT 60.159 50.000 32.81 16.06 37.57 4.00
2549 2643 2.498167 GGAGTATACATTGCCAGCTGG 58.502 52.381 29.34 29.34 38.53 4.85
2550 2644 2.158769 TGGGAGTATACATTGCCAGCTG 60.159 50.000 6.78 6.78 30.74 4.24
2551 2645 2.126882 TGGGAGTATACATTGCCAGCT 58.873 47.619 5.50 0.00 30.74 4.24
2552 2646 2.618709 GTTGGGAGTATACATTGCCAGC 59.381 50.000 5.50 4.82 36.13 4.85
2553 2647 2.872245 CGTTGGGAGTATACATTGCCAG 59.128 50.000 5.50 0.00 36.13 4.85
2554 2648 2.237643 ACGTTGGGAGTATACATTGCCA 59.762 45.455 5.50 3.41 32.56 4.92
2555 2649 2.914059 ACGTTGGGAGTATACATTGCC 58.086 47.619 5.50 0.52 0.00 4.52
2556 2650 6.425577 TTTAACGTTGGGAGTATACATTGC 57.574 37.500 11.99 0.00 0.00 3.56
2581 2675 0.111639 TCTTAGCACGCCCCCTTTTT 59.888 50.000 0.00 0.00 0.00 1.94
2582 2676 0.322546 CTCTTAGCACGCCCCCTTTT 60.323 55.000 0.00 0.00 0.00 2.27
2583 2677 1.299976 CTCTTAGCACGCCCCCTTT 59.700 57.895 0.00 0.00 0.00 3.11
2584 2678 1.900545 GACTCTTAGCACGCCCCCTT 61.901 60.000 0.00 0.00 0.00 3.95
2585 2679 2.284699 ACTCTTAGCACGCCCCCT 60.285 61.111 0.00 0.00 0.00 4.79
2586 2680 2.187163 GACTCTTAGCACGCCCCC 59.813 66.667 0.00 0.00 0.00 5.40
2587 2681 2.202756 CGACTCTTAGCACGCCCC 60.203 66.667 0.00 0.00 0.00 5.80
2588 2682 2.202756 CCGACTCTTAGCACGCCC 60.203 66.667 0.00 0.00 0.00 6.13
2589 2683 2.886124 GCCGACTCTTAGCACGCC 60.886 66.667 0.00 0.00 0.00 5.68
2590 2684 2.886124 GGCCGACTCTTAGCACGC 60.886 66.667 0.00 0.00 0.00 5.34
2591 2685 1.517257 CTGGCCGACTCTTAGCACG 60.517 63.158 0.00 0.00 0.00 5.34
2592 2686 1.811679 GCTGGCCGACTCTTAGCAC 60.812 63.158 0.00 0.00 34.64 4.40
2593 2687 2.230994 CTGCTGGCCGACTCTTAGCA 62.231 60.000 10.86 10.86 41.61 3.49
2594 2688 1.520342 CTGCTGGCCGACTCTTAGC 60.520 63.158 0.00 0.00 35.06 3.09
2595 2689 0.749649 ATCTGCTGGCCGACTCTTAG 59.250 55.000 0.00 0.00 0.00 2.18
2596 2690 0.747255 GATCTGCTGGCCGACTCTTA 59.253 55.000 0.00 0.00 0.00 2.10
2597 2691 1.260538 TGATCTGCTGGCCGACTCTT 61.261 55.000 0.00 0.00 0.00 2.85
2598 2692 1.047596 ATGATCTGCTGGCCGACTCT 61.048 55.000 0.00 0.00 0.00 3.24
2599 2693 0.179062 AATGATCTGCTGGCCGACTC 60.179 55.000 0.00 0.00 0.00 3.36
2600 2694 0.254178 AAATGATCTGCTGGCCGACT 59.746 50.000 0.00 0.00 0.00 4.18
2601 2695 1.064654 GAAAATGATCTGCTGGCCGAC 59.935 52.381 0.00 0.00 0.00 4.79
2602 2696 1.339920 TGAAAATGATCTGCTGGCCGA 60.340 47.619 0.00 0.00 0.00 5.54
2603 2697 1.097232 TGAAAATGATCTGCTGGCCG 58.903 50.000 0.00 0.00 0.00 6.13
2604 2698 3.598019 TTTGAAAATGATCTGCTGGCC 57.402 42.857 0.00 0.00 0.00 5.36
2624 2718 0.391927 TCGCGACCCGGATGATTTTT 60.392 50.000 3.71 0.00 37.59 1.94
2625 2719 0.810031 CTCGCGACCCGGATGATTTT 60.810 55.000 3.71 0.00 37.59 1.82
2626 2720 1.227263 CTCGCGACCCGGATGATTT 60.227 57.895 3.71 0.00 37.59 2.17
2627 2721 2.417516 CTCGCGACCCGGATGATT 59.582 61.111 3.71 0.00 37.59 2.57
2628 2722 4.286320 GCTCGCGACCCGGATGAT 62.286 66.667 3.71 0.00 37.59 2.45
2635 2729 4.467084 TTGGATGGCTCGCGACCC 62.467 66.667 13.71 13.71 0.00 4.46
2636 2730 3.195698 GTTGGATGGCTCGCGACC 61.196 66.667 3.71 12.86 0.00 4.79
2637 2731 3.195698 GGTTGGATGGCTCGCGAC 61.196 66.667 3.71 1.87 0.00 5.19
2638 2732 4.812476 CGGTTGGATGGCTCGCGA 62.812 66.667 9.26 9.26 0.00 5.87
2641 2735 4.856801 CCCCGGTTGGATGGCTCG 62.857 72.222 0.00 0.00 37.49 5.03
2642 2736 2.325393 CTACCCCGGTTGGATGGCTC 62.325 65.000 0.00 0.00 37.49 4.70
2643 2737 2.285818 TACCCCGGTTGGATGGCT 60.286 61.111 0.00 0.00 37.49 4.75
2644 2738 2.192175 CTACCCCGGTTGGATGGC 59.808 66.667 0.00 0.00 37.49 4.40
2645 2739 0.981277 ACTCTACCCCGGTTGGATGG 60.981 60.000 0.00 0.00 37.49 3.51
2646 2740 0.464452 GACTCTACCCCGGTTGGATG 59.536 60.000 0.00 0.00 37.49 3.51
2647 2741 0.690077 GGACTCTACCCCGGTTGGAT 60.690 60.000 0.00 0.00 37.49 3.41
2648 2742 1.305549 GGACTCTACCCCGGTTGGA 60.306 63.158 0.00 0.00 37.49 3.53
2649 2743 2.718073 CGGACTCTACCCCGGTTGG 61.718 68.421 0.00 0.00 41.89 3.77
2650 2744 1.538687 AACGGACTCTACCCCGGTTG 61.539 60.000 0.00 0.00 44.49 3.77
2651 2745 1.228988 AACGGACTCTACCCCGGTT 60.229 57.895 0.00 0.00 44.49 4.44
2655 2749 3.626394 GGGAACGGACTCTACCCC 58.374 66.667 0.00 0.00 35.00 4.95
2656 2750 0.616964 AAGGGGAACGGACTCTACCC 60.617 60.000 0.00 0.00 39.79 3.69
2657 2751 1.066358 CAAAGGGGAACGGACTCTACC 60.066 57.143 0.00 0.00 0.00 3.18
2658 2752 1.675116 GCAAAGGGGAACGGACTCTAC 60.675 57.143 0.00 0.00 0.00 2.59
2659 2753 0.611714 GCAAAGGGGAACGGACTCTA 59.388 55.000 0.00 0.00 0.00 2.43
2660 2754 1.375326 GCAAAGGGGAACGGACTCT 59.625 57.895 0.00 0.00 0.00 3.24
2661 2755 0.536460 TTGCAAAGGGGAACGGACTC 60.536 55.000 0.00 0.00 0.00 3.36
2662 2756 0.822121 GTTGCAAAGGGGAACGGACT 60.822 55.000 0.00 0.00 38.10 3.85
2663 2757 1.658114 GTTGCAAAGGGGAACGGAC 59.342 57.895 0.00 0.00 38.10 4.79
2664 2758 4.167597 GTTGCAAAGGGGAACGGA 57.832 55.556 0.00 0.00 38.10 4.69
2667 2761 1.068588 GGTCTTGTTGCAAAGGGGAAC 59.931 52.381 0.00 0.00 46.91 3.62
2668 2762 1.408969 GGTCTTGTTGCAAAGGGGAA 58.591 50.000 0.00 0.00 0.00 3.97
2669 2763 0.469144 GGGTCTTGTTGCAAAGGGGA 60.469 55.000 0.00 0.00 0.00 4.81
2670 2764 0.469892 AGGGTCTTGTTGCAAAGGGG 60.470 55.000 0.00 0.00 0.00 4.79
2671 2765 1.069049 CAAGGGTCTTGTTGCAAAGGG 59.931 52.381 0.00 0.00 0.00 3.95
2672 2766 1.756538 ACAAGGGTCTTGTTGCAAAGG 59.243 47.619 0.00 0.00 0.00 3.11
2673 2767 3.525268 AACAAGGGTCTTGTTGCAAAG 57.475 42.857 20.81 0.00 40.70 2.77
2679 2773 4.081198 TGAAATTGCAACAAGGGTCTTGTT 60.081 37.500 17.23 17.23 42.75 2.83
2680 2774 3.450457 TGAAATTGCAACAAGGGTCTTGT 59.550 39.130 0.00 7.41 0.00 3.16
2681 2775 4.057406 TGAAATTGCAACAAGGGTCTTG 57.943 40.909 0.00 6.15 0.00 3.02
2682 2776 4.441792 GTTGAAATTGCAACAAGGGTCTT 58.558 39.130 22.25 0.00 45.65 3.01
2683 2777 4.058721 GTTGAAATTGCAACAAGGGTCT 57.941 40.909 22.25 0.00 45.65 3.85
2691 2785 5.277442 CCAAGTTCCATGTTGAAATTGCAAC 60.277 40.000 20.72 20.72 44.60 4.17
2692 2786 4.815308 CCAAGTTCCATGTTGAAATTGCAA 59.185 37.500 15.22 0.00 44.60 4.08
2693 2787 4.141756 ACCAAGTTCCATGTTGAAATTGCA 60.142 37.500 15.22 0.00 44.60 4.08
2694 2788 4.379652 ACCAAGTTCCATGTTGAAATTGC 58.620 39.130 15.22 0.00 44.60 3.56
2695 2789 4.990426 GGACCAAGTTCCATGTTGAAATTG 59.010 41.667 14.24 14.24 45.18 2.32
2696 2790 4.261994 CGGACCAAGTTCCATGTTGAAATT 60.262 41.667 0.00 0.00 35.04 1.82
2697 2791 3.255642 CGGACCAAGTTCCATGTTGAAAT 59.744 43.478 0.00 0.00 35.04 2.17
2698 2792 2.621055 CGGACCAAGTTCCATGTTGAAA 59.379 45.455 0.00 0.00 35.04 2.69
2699 2793 2.158740 TCGGACCAAGTTCCATGTTGAA 60.159 45.455 0.00 0.00 35.04 2.69
2700 2794 1.418264 TCGGACCAAGTTCCATGTTGA 59.582 47.619 0.00 0.00 35.04 3.18
2701 2795 1.890876 TCGGACCAAGTTCCATGTTG 58.109 50.000 0.00 0.00 35.04 3.33
2702 2796 2.649531 TTCGGACCAAGTTCCATGTT 57.350 45.000 0.00 0.00 35.04 2.71
2703 2797 2.649531 TTTCGGACCAAGTTCCATGT 57.350 45.000 0.00 0.00 35.04 3.21
2704 2798 2.351738 GCTTTTCGGACCAAGTTCCATG 60.352 50.000 0.00 0.00 35.04 3.66
2705 2799 1.886542 GCTTTTCGGACCAAGTTCCAT 59.113 47.619 0.00 0.00 35.04 3.41
2706 2800 1.314730 GCTTTTCGGACCAAGTTCCA 58.685 50.000 0.00 0.00 35.04 3.53
2707 2801 1.314730 TGCTTTTCGGACCAAGTTCC 58.685 50.000 0.00 0.00 0.00 3.62
2708 2802 2.552315 TGATGCTTTTCGGACCAAGTTC 59.448 45.455 0.00 0.00 0.00 3.01
2709 2803 2.293399 GTGATGCTTTTCGGACCAAGTT 59.707 45.455 0.00 0.00 0.00 2.66
2710 2804 1.880027 GTGATGCTTTTCGGACCAAGT 59.120 47.619 0.00 0.00 0.00 3.16
2711 2805 1.200020 GGTGATGCTTTTCGGACCAAG 59.800 52.381 0.00 0.00 0.00 3.61
2712 2806 1.243902 GGTGATGCTTTTCGGACCAA 58.756 50.000 0.00 0.00 0.00 3.67
2713 2807 0.953471 CGGTGATGCTTTTCGGACCA 60.953 55.000 0.00 0.00 0.00 4.02
2714 2808 0.672401 TCGGTGATGCTTTTCGGACC 60.672 55.000 0.00 0.00 0.00 4.46
2715 2809 1.369625 ATCGGTGATGCTTTTCGGAC 58.630 50.000 0.00 0.00 0.00 4.79
2716 2810 2.006888 GAATCGGTGATGCTTTTCGGA 58.993 47.619 0.00 0.00 0.00 4.55
2717 2811 1.737236 TGAATCGGTGATGCTTTTCGG 59.263 47.619 0.00 0.00 0.00 4.30
2718 2812 2.774007 GTGAATCGGTGATGCTTTTCG 58.226 47.619 0.00 0.00 0.00 3.46
2719 2813 2.774007 CGTGAATCGGTGATGCTTTTC 58.226 47.619 0.00 0.00 35.71 2.29
2720 2814 2.900122 CGTGAATCGGTGATGCTTTT 57.100 45.000 0.00 0.00 35.71 2.27
2731 2825 2.776072 GTTGACGGCCGTGAATCG 59.224 61.111 39.65 4.80 39.52 3.34
2732 2826 1.952266 GACGTTGACGGCCGTGAATC 61.952 60.000 39.65 24.84 42.67 2.52
2733 2827 2.025418 GACGTTGACGGCCGTGAAT 61.025 57.895 39.65 20.63 42.67 2.57
2734 2828 2.659244 GACGTTGACGGCCGTGAA 60.659 61.111 39.65 32.84 42.67 3.18
2754 2848 5.319140 TCATCTTCTTGTCCATTGCAATG 57.681 39.130 28.91 28.91 36.17 2.82
2755 2849 4.401519 CCTCATCTTCTTGTCCATTGCAAT 59.598 41.667 5.99 5.99 0.00 3.56
2756 2850 3.760151 CCTCATCTTCTTGTCCATTGCAA 59.240 43.478 0.00 0.00 0.00 4.08
2757 2851 3.349927 CCTCATCTTCTTGTCCATTGCA 58.650 45.455 0.00 0.00 0.00 4.08
2758 2852 2.686915 CCCTCATCTTCTTGTCCATTGC 59.313 50.000 0.00 0.00 0.00 3.56
2759 2853 3.054139 TCCCCTCATCTTCTTGTCCATTG 60.054 47.826 0.00 0.00 0.00 2.82
2760 2854 3.192944 TCCCCTCATCTTCTTGTCCATT 58.807 45.455 0.00 0.00 0.00 3.16
2761 2855 2.776536 CTCCCCTCATCTTCTTGTCCAT 59.223 50.000 0.00 0.00 0.00 3.41
2762 2856 2.191400 CTCCCCTCATCTTCTTGTCCA 58.809 52.381 0.00 0.00 0.00 4.02
2763 2857 1.488393 CCTCCCCTCATCTTCTTGTCC 59.512 57.143 0.00 0.00 0.00 4.02
2764 2858 2.433970 CTCCTCCCCTCATCTTCTTGTC 59.566 54.545 0.00 0.00 0.00 3.18
2765 2859 2.045047 TCTCCTCCCCTCATCTTCTTGT 59.955 50.000 0.00 0.00 0.00 3.16
2766 2860 2.433970 GTCTCCTCCCCTCATCTTCTTG 59.566 54.545 0.00 0.00 0.00 3.02
2767 2861 2.045047 TGTCTCCTCCCCTCATCTTCTT 59.955 50.000 0.00 0.00 0.00 2.52
2768 2862 1.648568 TGTCTCCTCCCCTCATCTTCT 59.351 52.381 0.00 0.00 0.00 2.85
2769 2863 2.038659 CTGTCTCCTCCCCTCATCTTC 58.961 57.143 0.00 0.00 0.00 2.87
2770 2864 1.343884 CCTGTCTCCTCCCCTCATCTT 60.344 57.143 0.00 0.00 0.00 2.40
2771 2865 0.264359 CCTGTCTCCTCCCCTCATCT 59.736 60.000 0.00 0.00 0.00 2.90
2772 2866 0.762461 CCCTGTCTCCTCCCCTCATC 60.762 65.000 0.00 0.00 0.00 2.92
2773 2867 1.316266 CCCTGTCTCCTCCCCTCAT 59.684 63.158 0.00 0.00 0.00 2.90
2774 2868 2.780693 CCCTGTCTCCTCCCCTCA 59.219 66.667 0.00 0.00 0.00 3.86
2775 2869 1.967343 ATCCCCTGTCTCCTCCCCTC 61.967 65.000 0.00 0.00 0.00 4.30
2776 2870 1.541168 AATCCCCTGTCTCCTCCCCT 61.541 60.000 0.00 0.00 0.00 4.79
2777 2871 1.004891 AATCCCCTGTCTCCTCCCC 59.995 63.158 0.00 0.00 0.00 4.81
2778 2872 1.348775 CCAATCCCCTGTCTCCTCCC 61.349 65.000 0.00 0.00 0.00 4.30
2779 2873 0.326618 TCCAATCCCCTGTCTCCTCC 60.327 60.000 0.00 0.00 0.00 4.30
2780 2874 1.488393 CTTCCAATCCCCTGTCTCCTC 59.512 57.143 0.00 0.00 0.00 3.71
2781 2875 1.589414 CTTCCAATCCCCTGTCTCCT 58.411 55.000 0.00 0.00 0.00 3.69
2782 2876 0.106967 GCTTCCAATCCCCTGTCTCC 60.107 60.000 0.00 0.00 0.00 3.71
2783 2877 0.915364 AGCTTCCAATCCCCTGTCTC 59.085 55.000 0.00 0.00 0.00 3.36
2784 2878 0.622665 CAGCTTCCAATCCCCTGTCT 59.377 55.000 0.00 0.00 0.00 3.41
2785 2879 1.034292 GCAGCTTCCAATCCCCTGTC 61.034 60.000 0.00 0.00 0.00 3.51
2786 2880 1.000396 GCAGCTTCCAATCCCCTGT 60.000 57.895 0.00 0.00 0.00 4.00
2787 2881 1.755783 GGCAGCTTCCAATCCCCTG 60.756 63.158 0.00 0.00 0.00 4.45
2788 2882 2.240918 TGGCAGCTTCCAATCCCCT 61.241 57.895 1.25 0.00 32.18 4.79
2789 2883 2.054453 GTGGCAGCTTCCAATCCCC 61.054 63.158 6.68 0.00 37.96 4.81
2790 2884 2.054453 GGTGGCAGCTTCCAATCCC 61.054 63.158 6.68 0.00 37.96 3.85
2791 2885 1.304381 TGGTGGCAGCTTCCAATCC 60.304 57.895 18.53 5.83 37.96 3.01
2792 2886 1.598701 GGTGGTGGCAGCTTCCAATC 61.599 60.000 18.53 3.28 37.96 2.67
2793 2887 1.607467 GGTGGTGGCAGCTTCCAAT 60.607 57.895 18.53 0.00 37.96 3.16
2794 2888 2.203480 GGTGGTGGCAGCTTCCAA 60.203 61.111 18.53 0.00 37.96 3.53
2795 2889 4.641645 CGGTGGTGGCAGCTTCCA 62.642 66.667 18.53 0.00 0.00 3.53
2813 2907 4.363990 ACCTGAGCAGTCGCCACG 62.364 66.667 0.00 0.00 39.83 4.94
2814 2908 2.740055 CACCTGAGCAGTCGCCAC 60.740 66.667 0.00 0.00 39.83 5.01
2815 2909 4.687215 GCACCTGAGCAGTCGCCA 62.687 66.667 0.00 0.00 39.83 5.69
2817 2911 4.724602 TCGCACCTGAGCAGTCGC 62.725 66.667 0.00 0.00 38.99 5.19
2818 2912 1.664649 TTTCGCACCTGAGCAGTCG 60.665 57.895 0.00 0.00 0.00 4.18
2819 2913 1.862806 GTTTCGCACCTGAGCAGTC 59.137 57.895 0.00 0.00 0.00 3.51
2820 2914 1.956170 CGTTTCGCACCTGAGCAGT 60.956 57.895 0.00 0.00 0.00 4.40
2821 2915 1.221466 TTCGTTTCGCACCTGAGCAG 61.221 55.000 0.00 0.00 0.00 4.24
2822 2916 0.602638 ATTCGTTTCGCACCTGAGCA 60.603 50.000 0.00 0.00 0.00 4.26
2823 2917 0.095417 GATTCGTTTCGCACCTGAGC 59.905 55.000 0.00 0.00 0.00 4.26
2824 2918 0.366871 CGATTCGTTTCGCACCTGAG 59.633 55.000 0.00 0.00 31.60 3.35
2825 2919 1.011968 CCGATTCGTTTCGCACCTGA 61.012 55.000 5.20 0.00 37.80 3.86
2826 2920 1.289109 ACCGATTCGTTTCGCACCTG 61.289 55.000 5.20 0.00 37.80 4.00
2827 2921 1.005394 ACCGATTCGTTTCGCACCT 60.005 52.632 5.20 0.00 37.80 4.00
2828 2922 1.286354 TGACCGATTCGTTTCGCACC 61.286 55.000 5.20 0.00 37.80 5.01
2829 2923 0.093026 CTGACCGATTCGTTTCGCAC 59.907 55.000 5.20 2.40 37.80 5.34
2830 2924 1.011968 CCTGACCGATTCGTTTCGCA 61.012 55.000 5.20 0.00 37.80 5.10
2831 2925 1.012486 ACCTGACCGATTCGTTTCGC 61.012 55.000 5.20 0.00 37.80 4.70
2832 2926 0.989890 GACCTGACCGATTCGTTTCG 59.010 55.000 5.20 3.34 38.83 3.46
2833 2927 0.989890 CGACCTGACCGATTCGTTTC 59.010 55.000 5.20 1.91 0.00 2.78
2834 2928 0.599558 TCGACCTGACCGATTCGTTT 59.400 50.000 5.20 0.00 33.20 3.60
2835 2929 0.170561 CTCGACCTGACCGATTCGTT 59.829 55.000 5.20 0.00 35.35 3.85
2836 2930 1.654954 CCTCGACCTGACCGATTCGT 61.655 60.000 5.20 0.00 35.35 3.85
2837 2931 1.064296 CCTCGACCTGACCGATTCG 59.936 63.158 0.00 0.00 35.35 3.34
2838 2932 1.227002 GCCTCGACCTGACCGATTC 60.227 63.158 0.00 0.00 35.35 2.52
2839 2933 1.982395 TGCCTCGACCTGACCGATT 60.982 57.895 0.00 0.00 35.35 3.34
2840 2934 2.362503 TGCCTCGACCTGACCGAT 60.363 61.111 0.00 0.00 35.35 4.18
2841 2935 3.371063 GTGCCTCGACCTGACCGA 61.371 66.667 0.00 0.00 34.61 4.69
2842 2936 2.932234 AAGTGCCTCGACCTGACCG 61.932 63.158 0.00 0.00 0.00 4.79
2843 2937 1.374758 CAAGTGCCTCGACCTGACC 60.375 63.158 0.00 0.00 0.00 4.02
2844 2938 0.389166 CTCAAGTGCCTCGACCTGAC 60.389 60.000 0.00 0.00 0.00 3.51
2845 2939 0.539669 TCTCAAGTGCCTCGACCTGA 60.540 55.000 0.00 0.00 0.00 3.86
2846 2940 0.108898 CTCTCAAGTGCCTCGACCTG 60.109 60.000 0.00 0.00 0.00 4.00
2847 2941 1.254284 CCTCTCAAGTGCCTCGACCT 61.254 60.000 0.00 0.00 0.00 3.85
2848 2942 1.216710 CCTCTCAAGTGCCTCGACC 59.783 63.158 0.00 0.00 0.00 4.79
2849 2943 1.446966 GCCTCTCAAGTGCCTCGAC 60.447 63.158 0.00 0.00 0.00 4.20
2850 2944 2.973899 GCCTCTCAAGTGCCTCGA 59.026 61.111 0.00 0.00 0.00 4.04
2851 2945 2.507992 CGCCTCTCAAGTGCCTCG 60.508 66.667 0.00 0.00 0.00 4.63
2852 2946 2.125350 CCGCCTCTCAAGTGCCTC 60.125 66.667 0.00 0.00 0.00 4.70
2853 2947 4.400961 GCCGCCTCTCAAGTGCCT 62.401 66.667 0.00 0.00 0.00 4.75
2855 2949 4.742201 TCGCCGCCTCTCAAGTGC 62.742 66.667 0.00 0.00 0.00 4.40
2856 2950 2.771763 AAGTCGCCGCCTCTCAAGTG 62.772 60.000 0.00 0.00 0.00 3.16
2857 2951 2.493907 GAAGTCGCCGCCTCTCAAGT 62.494 60.000 0.00 0.00 0.00 3.16
2858 2952 1.807573 GAAGTCGCCGCCTCTCAAG 60.808 63.158 0.00 0.00 0.00 3.02
2859 2953 1.888436 ATGAAGTCGCCGCCTCTCAA 61.888 55.000 0.00 0.00 0.00 3.02
2860 2954 2.351244 ATGAAGTCGCCGCCTCTCA 61.351 57.895 0.00 0.00 0.00 3.27
2861 2955 1.880340 CATGAAGTCGCCGCCTCTC 60.880 63.158 0.00 0.00 0.00 3.20
2862 2956 2.185350 CATGAAGTCGCCGCCTCT 59.815 61.111 0.00 0.00 0.00 3.69
2863 2957 2.892425 CCATGAAGTCGCCGCCTC 60.892 66.667 0.00 0.00 0.00 4.70
2867 2961 3.197790 CTGGCCATGAAGTCGCCG 61.198 66.667 5.51 0.00 46.12 6.46
2868 2962 0.749454 ATTCTGGCCATGAAGTCGCC 60.749 55.000 5.51 0.00 43.32 5.54
2869 2963 1.098050 AATTCTGGCCATGAAGTCGC 58.902 50.000 5.51 0.00 0.00 5.19
2870 2964 2.223112 CGAAATTCTGGCCATGAAGTCG 60.223 50.000 23.39 23.39 32.62 4.18
2871 2965 3.009723 TCGAAATTCTGGCCATGAAGTC 58.990 45.455 5.51 12.28 0.00 3.01
2872 2966 3.012518 CTCGAAATTCTGGCCATGAAGT 58.987 45.455 5.51 9.01 0.00 3.01
2873 2967 2.357009 CCTCGAAATTCTGGCCATGAAG 59.643 50.000 5.51 0.00 0.00 3.02
2874 2968 2.368439 CCTCGAAATTCTGGCCATGAA 58.632 47.619 5.51 13.02 0.00 2.57
2875 2969 2.018644 GCCTCGAAATTCTGGCCATGA 61.019 52.381 5.51 2.85 39.49 3.07
2876 2970 0.383231 GCCTCGAAATTCTGGCCATG 59.617 55.000 5.51 0.00 39.49 3.66
2877 2971 2.799176 GCCTCGAAATTCTGGCCAT 58.201 52.632 5.51 0.00 39.49 4.40
2878 2972 4.319133 GCCTCGAAATTCTGGCCA 57.681 55.556 4.71 4.71 39.49 5.36
2880 2974 2.121538 GGGGCCTCGAAATTCTGGC 61.122 63.158 15.19 15.19 44.22 4.85
2881 2975 0.323360 TTGGGGCCTCGAAATTCTGG 60.323 55.000 0.84 0.00 0.00 3.86
2882 2976 0.811281 GTTGGGGCCTCGAAATTCTG 59.189 55.000 0.84 0.00 0.00 3.02
2883 2977 0.323451 GGTTGGGGCCTCGAAATTCT 60.323 55.000 0.84 0.00 0.00 2.40
2884 2978 0.323451 AGGTTGGGGCCTCGAAATTC 60.323 55.000 0.84 0.00 32.39 2.17
2885 2979 0.323451 GAGGTTGGGGCCTCGAAATT 60.323 55.000 0.84 0.00 44.64 1.82
2886 2980 1.303282 GAGGTTGGGGCCTCGAAAT 59.697 57.895 0.84 0.00 44.64 2.17
2887 2981 2.754375 GAGGTTGGGGCCTCGAAA 59.246 61.111 0.84 0.00 44.64 3.46
2892 2986 1.544917 ATTGAGGAGGTTGGGGCCT 60.545 57.895 0.84 0.00 42.53 5.19
2893 2987 1.380380 CATTGAGGAGGTTGGGGCC 60.380 63.158 0.00 0.00 0.00 5.80
2894 2988 2.054453 GCATTGAGGAGGTTGGGGC 61.054 63.158 0.00 0.00 0.00 5.80
2895 2989 1.380380 GGCATTGAGGAGGTTGGGG 60.380 63.158 0.00 0.00 0.00 4.96
2896 2990 0.394899 GAGGCATTGAGGAGGTTGGG 60.395 60.000 0.00 0.00 0.00 4.12
2897 2991 0.622665 AGAGGCATTGAGGAGGTTGG 59.377 55.000 0.00 0.00 0.00 3.77
2898 2992 2.768527 TCTAGAGGCATTGAGGAGGTTG 59.231 50.000 0.00 0.00 0.00 3.77
2899 2993 3.121929 TCTAGAGGCATTGAGGAGGTT 57.878 47.619 0.00 0.00 0.00 3.50
2900 2994 2.856760 TCTAGAGGCATTGAGGAGGT 57.143 50.000 0.00 0.00 0.00 3.85
2901 2995 3.237746 TGATCTAGAGGCATTGAGGAGG 58.762 50.000 0.00 0.00 0.00 4.30
2902 2996 4.952071 TTGATCTAGAGGCATTGAGGAG 57.048 45.455 0.00 0.00 0.00 3.69
2903 2997 5.047731 CGTATTGATCTAGAGGCATTGAGGA 60.048 44.000 0.00 0.00 0.00 3.71
2904 2998 5.167121 CGTATTGATCTAGAGGCATTGAGG 58.833 45.833 0.00 0.00 0.00 3.86
2905 2999 5.167121 CCGTATTGATCTAGAGGCATTGAG 58.833 45.833 0.00 0.00 0.00 3.02
2906 3000 4.021104 CCCGTATTGATCTAGAGGCATTGA 60.021 45.833 0.00 0.00 0.00 2.57
2907 3001 4.021104 TCCCGTATTGATCTAGAGGCATTG 60.021 45.833 0.00 0.00 0.00 2.82
2908 3002 4.160329 TCCCGTATTGATCTAGAGGCATT 58.840 43.478 0.00 0.00 0.00 3.56
2909 3003 3.779444 TCCCGTATTGATCTAGAGGCAT 58.221 45.455 0.00 0.00 0.00 4.40
2910 3004 3.238788 TCCCGTATTGATCTAGAGGCA 57.761 47.619 0.00 0.00 0.00 4.75
2911 3005 4.602340 TTTCCCGTATTGATCTAGAGGC 57.398 45.455 0.00 0.00 0.00 4.70
2912 3006 5.511545 CCCTTTTCCCGTATTGATCTAGAGG 60.512 48.000 0.00 0.00 0.00 3.69
2913 3007 5.304614 TCCCTTTTCCCGTATTGATCTAGAG 59.695 44.000 0.00 0.00 0.00 2.43
2914 3008 5.213519 TCCCTTTTCCCGTATTGATCTAGA 58.786 41.667 0.00 0.00 0.00 2.43
2915 3009 5.546621 TCCCTTTTCCCGTATTGATCTAG 57.453 43.478 0.00 0.00 0.00 2.43
2916 3010 5.961398 TTCCCTTTTCCCGTATTGATCTA 57.039 39.130 0.00 0.00 0.00 1.98
2917 3011 4.855298 TTCCCTTTTCCCGTATTGATCT 57.145 40.909 0.00 0.00 0.00 2.75
2918 3012 4.338400 CCTTTCCCTTTTCCCGTATTGATC 59.662 45.833 0.00 0.00 0.00 2.92
2919 3013 4.278310 CCTTTCCCTTTTCCCGTATTGAT 58.722 43.478 0.00 0.00 0.00 2.57
2920 3014 3.692690 CCTTTCCCTTTTCCCGTATTGA 58.307 45.455 0.00 0.00 0.00 2.57
3195 3289 7.616313 TCAAAGAGGCCTTAAAACTTCAAAAA 58.384 30.769 6.77 0.00 31.15 1.94
3196 3290 7.176589 TCAAAGAGGCCTTAAAACTTCAAAA 57.823 32.000 6.77 0.00 31.15 2.44
3197 3291 6.783708 TCAAAGAGGCCTTAAAACTTCAAA 57.216 33.333 6.77 0.00 31.15 2.69
3198 3292 6.976934 ATCAAAGAGGCCTTAAAACTTCAA 57.023 33.333 6.77 0.00 31.15 2.69
3199 3293 6.293955 CGAATCAAAGAGGCCTTAAAACTTCA 60.294 38.462 6.77 0.00 31.15 3.02
3200 3294 6.086871 CGAATCAAAGAGGCCTTAAAACTTC 58.913 40.000 6.77 6.34 31.15 3.01
3201 3295 5.564848 GCGAATCAAAGAGGCCTTAAAACTT 60.565 40.000 6.77 1.39 31.15 2.66
3202 3296 4.082733 GCGAATCAAAGAGGCCTTAAAACT 60.083 41.667 6.77 0.00 31.15 2.66
3203 3297 4.166523 GCGAATCAAAGAGGCCTTAAAAC 58.833 43.478 6.77 0.00 31.15 2.43
3204 3298 3.823873 TGCGAATCAAAGAGGCCTTAAAA 59.176 39.130 6.77 0.00 31.15 1.52
3205 3299 3.417101 TGCGAATCAAAGAGGCCTTAAA 58.583 40.909 6.77 0.00 31.15 1.52
3206 3300 3.009723 CTGCGAATCAAAGAGGCCTTAA 58.990 45.455 6.77 0.00 31.15 1.85
3207 3301 2.632377 CTGCGAATCAAAGAGGCCTTA 58.368 47.619 6.77 0.00 31.15 2.69
3208 3302 1.457346 CTGCGAATCAAAGAGGCCTT 58.543 50.000 6.77 0.00 0.00 4.35
3209 3303 0.393537 CCTGCGAATCAAAGAGGCCT 60.394 55.000 3.86 3.86 0.00 5.19
3210 3304 0.392998 TCCTGCGAATCAAAGAGGCC 60.393 55.000 0.00 0.00 0.00 5.19
3211 3305 1.673168 ATCCTGCGAATCAAAGAGGC 58.327 50.000 0.00 0.00 0.00 4.70
3212 3306 3.012518 ACAATCCTGCGAATCAAAGAGG 58.987 45.455 0.00 0.00 0.00 3.69
3213 3307 5.801350 TTACAATCCTGCGAATCAAAGAG 57.199 39.130 0.00 0.00 0.00 2.85
3214 3308 6.567687 TTTTACAATCCTGCGAATCAAAGA 57.432 33.333 0.00 0.00 0.00 2.52
3215 3309 6.640499 TGTTTTTACAATCCTGCGAATCAAAG 59.360 34.615 0.00 0.00 0.00 2.77
3216 3310 6.507900 TGTTTTTACAATCCTGCGAATCAAA 58.492 32.000 0.00 0.00 0.00 2.69
3217 3311 6.078202 TGTTTTTACAATCCTGCGAATCAA 57.922 33.333 0.00 0.00 0.00 2.57
3218 3312 5.697473 TGTTTTTACAATCCTGCGAATCA 57.303 34.783 0.00 0.00 0.00 2.57
3219 3313 5.516339 CCATGTTTTTACAATCCTGCGAATC 59.484 40.000 0.00 0.00 0.00 2.52
3220 3314 5.410067 CCATGTTTTTACAATCCTGCGAAT 58.590 37.500 0.00 0.00 0.00 3.34
3221 3315 4.321601 CCCATGTTTTTACAATCCTGCGAA 60.322 41.667 0.00 0.00 0.00 4.70
3222 3316 3.192422 CCCATGTTTTTACAATCCTGCGA 59.808 43.478 0.00 0.00 0.00 5.10
3223 3317 3.192422 TCCCATGTTTTTACAATCCTGCG 59.808 43.478 0.00 0.00 0.00 5.18
3224 3318 4.799564 TCCCATGTTTTTACAATCCTGC 57.200 40.909 0.00 0.00 0.00 4.85
3225 3319 7.341769 TCCTATTCCCATGTTTTTACAATCCTG 59.658 37.037 0.00 0.00 0.00 3.86
3226 3320 7.418378 TCCTATTCCCATGTTTTTACAATCCT 58.582 34.615 0.00 0.00 0.00 3.24
3227 3321 7.654022 TCCTATTCCCATGTTTTTACAATCC 57.346 36.000 0.00 0.00 0.00 3.01
3228 3322 9.936759 TTTTCCTATTCCCATGTTTTTACAATC 57.063 29.630 0.00 0.00 0.00 2.67
3230 3324 9.549078 GTTTTTCCTATTCCCATGTTTTTACAA 57.451 29.630 0.00 0.00 0.00 2.41
3231 3325 8.705594 TGTTTTTCCTATTCCCATGTTTTTACA 58.294 29.630 0.00 0.00 0.00 2.41
3232 3326 9.719355 ATGTTTTTCCTATTCCCATGTTTTTAC 57.281 29.630 0.00 0.00 0.00 2.01
3234 3328 9.942850 CTATGTTTTTCCTATTCCCATGTTTTT 57.057 29.630 0.00 0.00 0.00 1.94
3235 3329 8.539544 CCTATGTTTTTCCTATTCCCATGTTTT 58.460 33.333 0.00 0.00 0.00 2.43
3236 3330 7.898636 TCCTATGTTTTTCCTATTCCCATGTTT 59.101 33.333 0.00 0.00 0.00 2.83
3237 3331 7.418378 TCCTATGTTTTTCCTATTCCCATGTT 58.582 34.615 0.00 0.00 0.00 2.71
3238 3332 6.980577 TCCTATGTTTTTCCTATTCCCATGT 58.019 36.000 0.00 0.00 0.00 3.21
3239 3333 8.362639 CAATCCTATGTTTTTCCTATTCCCATG 58.637 37.037 0.00 0.00 0.00 3.66
3240 3334 8.288812 TCAATCCTATGTTTTTCCTATTCCCAT 58.711 33.333 0.00 0.00 0.00 4.00
3241 3335 7.647827 TCAATCCTATGTTTTTCCTATTCCCA 58.352 34.615 0.00 0.00 0.00 4.37
3242 3336 8.533569 TTCAATCCTATGTTTTTCCTATTCCC 57.466 34.615 0.00 0.00 0.00 3.97
3247 3341 9.527157 TGACATTTCAATCCTATGTTTTTCCTA 57.473 29.630 0.00 0.00 32.94 2.94
3248 3342 8.421249 TGACATTTCAATCCTATGTTTTTCCT 57.579 30.769 0.00 0.00 32.94 3.36
3249 3343 9.090692 CATGACATTTCAATCCTATGTTTTTCC 57.909 33.333 0.00 0.00 34.61 3.13
3250 3344 8.598075 GCATGACATTTCAATCCTATGTTTTTC 58.402 33.333 0.00 0.00 34.61 2.29
3251 3345 8.316214 AGCATGACATTTCAATCCTATGTTTTT 58.684 29.630 0.00 0.00 34.61 1.94
3252 3346 7.844009 AGCATGACATTTCAATCCTATGTTTT 58.156 30.769 0.00 0.00 34.61 2.43
3253 3347 7.123098 TGAGCATGACATTTCAATCCTATGTTT 59.877 33.333 0.00 0.00 34.61 2.83
3254 3348 6.604396 TGAGCATGACATTTCAATCCTATGTT 59.396 34.615 0.00 0.00 34.61 2.71
3255 3349 6.124340 TGAGCATGACATTTCAATCCTATGT 58.876 36.000 0.00 0.00 34.61 2.29
3256 3350 6.628919 TGAGCATGACATTTCAATCCTATG 57.371 37.500 0.00 0.00 34.61 2.23
3257 3351 7.232188 AGATGAGCATGACATTTCAATCCTAT 58.768 34.615 0.00 0.00 34.61 2.57
3258 3352 6.598503 AGATGAGCATGACATTTCAATCCTA 58.401 36.000 0.00 0.00 34.61 2.94
3259 3353 5.446860 AGATGAGCATGACATTTCAATCCT 58.553 37.500 0.00 1.07 34.61 3.24
3260 3354 5.298527 TGAGATGAGCATGACATTTCAATCC 59.701 40.000 17.44 2.80 34.61 3.01
3261 3355 6.373186 TGAGATGAGCATGACATTTCAATC 57.627 37.500 17.44 6.14 34.61 2.67
3262 3356 6.769134 TTGAGATGAGCATGACATTTCAAT 57.231 33.333 22.51 4.82 34.61 2.57
3263 3357 6.183360 GGATTGAGATGAGCATGACATTTCAA 60.183 38.462 25.48 25.48 34.61 2.69
3264 3358 5.298527 GGATTGAGATGAGCATGACATTTCA 59.701 40.000 16.49 16.49 35.73 2.69
3265 3359 5.531659 AGGATTGAGATGAGCATGACATTTC 59.468 40.000 0.00 6.87 0.00 2.17
3266 3360 5.446860 AGGATTGAGATGAGCATGACATTT 58.553 37.500 0.00 0.00 0.00 2.32
3267 3361 5.050126 AGGATTGAGATGAGCATGACATT 57.950 39.130 0.00 0.00 0.00 2.71
3268 3362 4.708576 AGGATTGAGATGAGCATGACAT 57.291 40.909 0.00 0.61 0.00 3.06
3269 3363 5.820404 ATAGGATTGAGATGAGCATGACA 57.180 39.130 0.00 0.00 0.00 3.58
3270 3364 6.154192 TCCTATAGGATTGAGATGAGCATGAC 59.846 42.308 18.00 0.00 39.78 3.06
3271 3365 6.259123 TCCTATAGGATTGAGATGAGCATGA 58.741 40.000 18.00 0.00 39.78 3.07
3272 3366 6.154877 ACTCCTATAGGATTGAGATGAGCATG 59.845 42.308 21.95 7.54 44.46 4.06
3273 3367 6.262980 ACTCCTATAGGATTGAGATGAGCAT 58.737 40.000 21.95 0.00 44.46 3.79
3274 3368 5.649265 ACTCCTATAGGATTGAGATGAGCA 58.351 41.667 21.95 0.00 44.46 4.26
3275 3369 6.603940 AACTCCTATAGGATTGAGATGAGC 57.396 41.667 21.95 0.00 44.46 4.26
3276 3370 8.748412 CCTAAACTCCTATAGGATTGAGATGAG 58.252 40.741 21.95 9.35 44.46 2.90
3277 3371 7.676043 CCCTAAACTCCTATAGGATTGAGATGA 59.324 40.741 21.95 0.00 44.46 2.92
3278 3372 7.456269 ACCCTAAACTCCTATAGGATTGAGATG 59.544 40.741 21.95 10.76 44.46 2.90
3279 3373 7.549141 ACCCTAAACTCCTATAGGATTGAGAT 58.451 38.462 21.95 2.43 44.46 2.75
3280 3374 6.935036 ACCCTAAACTCCTATAGGATTGAGA 58.065 40.000 21.95 6.21 44.46 3.27
3281 3375 7.013834 AGACCCTAAACTCCTATAGGATTGAG 58.986 42.308 21.95 17.69 44.46 3.02
3282 3376 6.935036 AGACCCTAAACTCCTATAGGATTGA 58.065 40.000 21.95 10.47 44.46 2.57
3283 3377 7.013834 AGAGACCCTAAACTCCTATAGGATTG 58.986 42.308 21.95 13.60 44.46 2.67
3284 3378 7.182017 AGAGACCCTAAACTCCTATAGGATT 57.818 40.000 21.95 16.09 44.46 3.01
3285 3379 6.806959 AGAGACCCTAAACTCCTATAGGAT 57.193 41.667 21.95 10.12 44.46 3.24
3286 3380 6.609379 AAGAGACCCTAAACTCCTATAGGA 57.391 41.667 20.53 20.53 41.03 2.94
3287 3381 6.839657 TCAAAGAGACCCTAAACTCCTATAGG 59.160 42.308 13.07 13.07 38.74 2.57
3288 3382 7.899648 TCAAAGAGACCCTAAACTCCTATAG 57.100 40.000 0.00 0.00 34.13 1.31
3289 3383 8.855804 AATCAAAGAGACCCTAAACTCCTATA 57.144 34.615 0.00 0.00 34.13 1.31
3290 3384 7.403231 TGAATCAAAGAGACCCTAAACTCCTAT 59.597 37.037 0.00 0.00 34.13 2.57
3291 3385 6.729100 TGAATCAAAGAGACCCTAAACTCCTA 59.271 38.462 0.00 0.00 34.13 2.94
3292 3386 5.548056 TGAATCAAAGAGACCCTAAACTCCT 59.452 40.000 0.00 0.00 34.13 3.69
3293 3387 5.805728 TGAATCAAAGAGACCCTAAACTCC 58.194 41.667 0.00 0.00 34.13 3.85
3294 3388 7.745620 TTTGAATCAAAGAGACCCTAAACTC 57.254 36.000 4.03 0.00 0.00 3.01
3317 3411 9.759473 TCCTTCAAAGATCTTATGAAAATCCTT 57.241 29.630 22.23 0.15 33.08 3.36
3318 3412 9.933240 ATCCTTCAAAGATCTTATGAAAATCCT 57.067 29.630 22.23 10.96 33.08 3.24
3364 3458 9.123902 CCTACAAATCAAATGATCAACATAGGA 57.876 33.333 0.00 0.00 38.38 2.94
3365 3459 9.123902 TCCTACAAATCAAATGATCAACATAGG 57.876 33.333 0.00 2.01 38.38 2.57
3368 3462 9.811995 CAATCCTACAAATCAAATGATCAACAT 57.188 29.630 0.00 0.00 41.45 2.71
3369 3463 9.022884 TCAATCCTACAAATCAAATGATCAACA 57.977 29.630 0.00 0.00 32.75 3.33
3370 3464 9.859427 TTCAATCCTACAAATCAAATGATCAAC 57.141 29.630 0.00 0.00 32.75 3.18
3373 3467 9.688592 GGATTCAATCCTACAAATCAAATGATC 57.311 33.333 9.43 0.00 46.19 2.92
3418 3512 9.559958 CCTGTGAAATGTAGTACAAATGAATTC 57.440 33.333 7.16 0.00 0.00 2.17
3419 3513 9.295825 TCCTGTGAAATGTAGTACAAATGAATT 57.704 29.630 7.16 0.00 0.00 2.17
3420 3514 8.862325 TCCTGTGAAATGTAGTACAAATGAAT 57.138 30.769 7.16 0.00 0.00 2.57
3421 3515 8.684386 TTCCTGTGAAATGTAGTACAAATGAA 57.316 30.769 7.16 0.25 0.00 2.57
3422 3516 8.862325 ATTCCTGTGAAATGTAGTACAAATGA 57.138 30.769 7.16 0.00 33.32 2.57
3423 3517 9.559958 GAATTCCTGTGAAATGTAGTACAAATG 57.440 33.333 7.16 0.00 33.32 2.32
3424 3518 9.520515 AGAATTCCTGTGAAATGTAGTACAAAT 57.479 29.630 7.16 0.00 33.32 2.32
3425 3519 8.918202 AGAATTCCTGTGAAATGTAGTACAAA 57.082 30.769 7.16 0.00 33.32 2.83
3426 3520 9.653287 CTAGAATTCCTGTGAAATGTAGTACAA 57.347 33.333 7.16 0.00 33.32 2.41
3427 3521 7.764443 GCTAGAATTCCTGTGAAATGTAGTACA 59.236 37.037 5.24 5.24 32.51 2.90
3428 3522 7.764443 TGCTAGAATTCCTGTGAAATGTAGTAC 59.236 37.037 0.65 0.00 32.51 2.73
3429 3523 7.847096 TGCTAGAATTCCTGTGAAATGTAGTA 58.153 34.615 0.65 0.00 32.51 1.82
3430 3524 6.711277 TGCTAGAATTCCTGTGAAATGTAGT 58.289 36.000 0.65 0.00 32.51 2.73
3431 3525 7.041508 GGATGCTAGAATTCCTGTGAAATGTAG 60.042 40.741 0.65 0.00 32.87 2.74
3432 3526 6.767902 GGATGCTAGAATTCCTGTGAAATGTA 59.232 38.462 0.65 0.00 33.32 2.29
3433 3527 5.591877 GGATGCTAGAATTCCTGTGAAATGT 59.408 40.000 0.65 0.00 33.32 2.71
3434 3528 5.591472 TGGATGCTAGAATTCCTGTGAAATG 59.409 40.000 0.65 0.00 33.32 2.32
3435 3529 5.591877 GTGGATGCTAGAATTCCTGTGAAAT 59.408 40.000 0.65 0.00 33.32 2.17
3436 3530 4.943705 GTGGATGCTAGAATTCCTGTGAAA 59.056 41.667 0.65 0.00 33.32 2.69
3437 3531 4.225942 AGTGGATGCTAGAATTCCTGTGAA 59.774 41.667 0.65 0.00 34.33 3.18
3438 3532 3.776969 AGTGGATGCTAGAATTCCTGTGA 59.223 43.478 0.65 0.00 0.00 3.58
3439 3533 4.125703 GAGTGGATGCTAGAATTCCTGTG 58.874 47.826 0.65 0.00 0.00 3.66
3440 3534 3.776969 TGAGTGGATGCTAGAATTCCTGT 59.223 43.478 0.65 0.00 0.00 4.00
3441 3535 4.412796 TGAGTGGATGCTAGAATTCCTG 57.587 45.455 0.65 0.00 0.00 3.86
3442 3536 5.189180 GTTTGAGTGGATGCTAGAATTCCT 58.811 41.667 0.65 0.00 0.00 3.36
3443 3537 4.336713 GGTTTGAGTGGATGCTAGAATTCC 59.663 45.833 0.65 0.00 0.00 3.01
3444 3538 5.189180 AGGTTTGAGTGGATGCTAGAATTC 58.811 41.667 0.00 0.00 0.00 2.17
3445 3539 5.045286 AGAGGTTTGAGTGGATGCTAGAATT 60.045 40.000 0.00 0.00 0.00 2.17
3446 3540 4.472833 AGAGGTTTGAGTGGATGCTAGAAT 59.527 41.667 0.00 0.00 0.00 2.40
3447 3541 3.840666 AGAGGTTTGAGTGGATGCTAGAA 59.159 43.478 0.00 0.00 0.00 2.10
3448 3542 3.445008 AGAGGTTTGAGTGGATGCTAGA 58.555 45.455 0.00 0.00 0.00 2.43
3449 3543 3.902881 AGAGGTTTGAGTGGATGCTAG 57.097 47.619 0.00 0.00 0.00 3.42


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.