Multiple sequence alignment - TraesCS7A01G126900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G126900 chr7A 100.000 3898 0 0 1 3898 81631449 81635346 0.000000e+00 7199.0
1 TraesCS7A01G126900 chr7A 85.591 465 37 12 1650 2103 728374749 728374304 9.870000e-126 460.0
2 TraesCS7A01G126900 chr7A 83.943 492 52 10 1650 2134 658724319 658724790 2.760000e-121 446.0
3 TraesCS7A01G126900 chr7A 83.065 496 50 9 1646 2134 576381986 576381518 1.670000e-113 420.0
4 TraesCS7A01G126900 chr7A 93.596 203 11 2 135 337 608460684 608460884 6.330000e-78 302.0
5 TraesCS7A01G126900 chr7A 80.247 243 29 12 1301 1526 728375000 728374760 8.660000e-37 165.0
6 TraesCS7A01G126900 chr7D 88.789 3238 188 74 775 3898 78189670 78192846 0.000000e+00 3807.0
7 TraesCS7A01G126900 chr7D 82.005 439 38 21 336 750 78188872 78189293 6.240000e-88 335.0
8 TraesCS7A01G126900 chr7D 88.462 52 5 1 43 94 78188625 78188675 1.170000e-05 62.1
9 TraesCS7A01G126900 chr7B 87.990 2881 160 88 377 3176 25586907 25589682 0.000000e+00 3232.0
10 TraesCS7A01G126900 chr7B 90.175 743 46 11 3174 3898 25589716 25590449 0.000000e+00 942.0
11 TraesCS7A01G126900 chr4A 78.176 866 99 49 1222 2053 651217722 651218531 1.640000e-128 470.0
12 TraesCS7A01G126900 chr4A 94.118 204 12 0 134 337 596662255 596662052 1.050000e-80 311.0
13 TraesCS7A01G126900 chr3A 84.756 492 47 14 1650 2134 604999784 604999314 5.900000e-128 468.0
14 TraesCS7A01G126900 chr3A 96.040 202 8 0 136 337 189211528 189211729 2.900000e-86 329.0
15 TraesCS7A01G126900 chr3A 83.621 232 19 9 1301 1526 605000013 604999795 2.380000e-47 200.0
16 TraesCS7A01G126900 chr3A 89.130 46 5 0 50 95 729403997 729403952 1.510000e-04 58.4
17 TraesCS7A01G126900 chr6A 78.136 869 94 49 1222 2053 254936332 254937141 7.630000e-127 464.0
18 TraesCS7A01G126900 chr6A 80.263 304 49 7 1835 2134 354884862 354884566 6.560000e-53 219.0
19 TraesCS7A01G126900 chr6A 88.525 61 6 1 1292 1351 596750224 596750164 5.400000e-09 73.1
20 TraesCS7A01G126900 chr4B 83.943 492 53 12 1650 2134 228742526 228742998 7.680000e-122 448.0
21 TraesCS7A01G126900 chr4B 78.024 678 71 38 1222 1872 344472038 344472664 4.790000e-94 355.0
22 TraesCS7A01G126900 chr4B 79.739 306 28 18 1367 1672 53487048 53486777 1.430000e-44 191.0
23 TraesCS7A01G126900 chr5B 82.677 508 60 10 1635 2134 56020315 56020802 3.600000e-115 425.0
24 TraesCS7A01G126900 chr5B 79.908 433 49 22 1635 2053 167760135 167759727 2.290000e-72 283.0
25 TraesCS7A01G126900 chr5B 78.963 328 41 18 1222 1526 167760528 167760206 8.540000e-47 198.0
26 TraesCS7A01G126900 chr2A 95.074 203 10 0 133 335 592850986 592850784 1.750000e-83 320.0
27 TraesCS7A01G126900 chr1A 95.050 202 10 0 136 337 213901968 213902169 6.280000e-83 318.0
28 TraesCS7A01G126900 chr3B 94.118 204 11 1 135 337 584457291 584457088 3.780000e-80 309.0
29 TraesCS7A01G126900 chr3B 94.059 202 12 0 136 337 316044104 316043903 1.360000e-79 307.0
30 TraesCS7A01G126900 chr2D 94.059 202 12 0 135 336 309538913 309539114 1.360000e-79 307.0
31 TraesCS7A01G126900 chr2D 79.562 411 29 24 1454 1861 348066526 348066884 3.890000e-60 243.0
32 TraesCS7A01G126900 chr5D 94.030 201 11 1 136 336 200241625 200241426 1.760000e-78 303.0
33 TraesCS7A01G126900 chr5D 80.263 304 44 9 1835 2134 380294254 380293963 8.480000e-52 215.0
34 TraesCS7A01G126900 chr6D 88.525 61 6 1 1292 1351 451111151 451111091 5.400000e-09 73.1
35 TraesCS7A01G126900 chr6B 88.525 61 6 1 1292 1351 685201642 685201582 5.400000e-09 73.1
36 TraesCS7A01G126900 chr6B 89.130 46 5 0 50 95 713328861 713328906 1.510000e-04 58.4
37 TraesCS7A01G126900 chr3D 89.130 46 5 0 50 95 560351520 560351475 1.510000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G126900 chr7A 81631449 81635346 3897 False 7199.000000 7199 100.000000 1 3898 1 chr7A.!!$F1 3897
1 TraesCS7A01G126900 chr7A 728374304 728375000 696 True 312.500000 460 82.919000 1301 2103 2 chr7A.!!$R2 802
2 TraesCS7A01G126900 chr7D 78188625 78192846 4221 False 1401.366667 3807 86.418667 43 3898 3 chr7D.!!$F1 3855
3 TraesCS7A01G126900 chr7B 25586907 25590449 3542 False 2087.000000 3232 89.082500 377 3898 2 chr7B.!!$F1 3521
4 TraesCS7A01G126900 chr4A 651217722 651218531 809 False 470.000000 470 78.176000 1222 2053 1 chr4A.!!$F1 831
5 TraesCS7A01G126900 chr3A 604999314 605000013 699 True 334.000000 468 84.188500 1301 2134 2 chr3A.!!$R2 833
6 TraesCS7A01G126900 chr6A 254936332 254937141 809 False 464.000000 464 78.136000 1222 2053 1 chr6A.!!$F1 831
7 TraesCS7A01G126900 chr4B 344472038 344472664 626 False 355.000000 355 78.024000 1222 1872 1 chr4B.!!$F2 650
8 TraesCS7A01G126900 chr5B 167759727 167760528 801 True 240.500000 283 79.435500 1222 2053 2 chr5B.!!$R1 831

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
439 601 0.323542 ACAGGGAGTACGTGAGAGGG 60.324 60.0 1.09 0.0 38.32 4.3 F
1526 2181 0.110486 ATTCCAACAAGGTCGGCACT 59.890 50.0 0.00 0.0 39.02 4.4 F
2476 3191 0.032130 TCACTTGGAGTCGTCACAGC 59.968 55.0 0.00 0.0 0.00 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1824 2501 0.548989 ACAACACCCACAGTAAGGCA 59.451 50.0 0.00 0.0 0.0 4.75 R
2750 3482 0.034186 GGTGAAGGGGCATGTCATCA 60.034 55.0 0.00 0.0 0.0 3.07 R
3768 4555 0.378962 AGATCGCTGAGCTACGTCAC 59.621 55.0 1.78 0.0 0.0 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 8.716646 ATACGATGAACAATCTGAACATAACA 57.283 30.769 0.00 0.00 32.61 2.41
35 36 6.831769 ACGATGAACAATCTGAACATAACAC 58.168 36.000 0.00 0.00 32.61 3.32
36 37 6.426633 ACGATGAACAATCTGAACATAACACA 59.573 34.615 0.00 0.00 32.61 3.72
37 38 7.041440 ACGATGAACAATCTGAACATAACACAA 60.041 33.333 0.00 0.00 32.61 3.33
38 39 7.269084 CGATGAACAATCTGAACATAACACAAC 59.731 37.037 0.00 0.00 32.61 3.32
39 40 6.426327 TGAACAATCTGAACATAACACAACG 58.574 36.000 0.00 0.00 0.00 4.10
40 41 6.258947 TGAACAATCTGAACATAACACAACGA 59.741 34.615 0.00 0.00 0.00 3.85
41 42 6.801539 ACAATCTGAACATAACACAACGAT 57.198 33.333 0.00 0.00 0.00 3.73
42 43 6.831769 ACAATCTGAACATAACACAACGATC 58.168 36.000 0.00 0.00 0.00 3.69
43 44 6.426633 ACAATCTGAACATAACACAACGATCA 59.573 34.615 0.00 0.00 0.00 2.92
44 45 7.041440 ACAATCTGAACATAACACAACGATCAA 60.041 33.333 0.00 0.00 0.00 2.57
45 46 6.223138 TCTGAACATAACACAACGATCAAC 57.777 37.500 0.00 0.00 0.00 3.18
46 47 5.178623 TCTGAACATAACACAACGATCAACC 59.821 40.000 0.00 0.00 0.00 3.77
47 48 4.816925 TGAACATAACACAACGATCAACCA 59.183 37.500 0.00 0.00 0.00 3.67
48 49 5.297029 TGAACATAACACAACGATCAACCAA 59.703 36.000 0.00 0.00 0.00 3.67
49 50 5.356882 ACATAACACAACGATCAACCAAG 57.643 39.130 0.00 0.00 0.00 3.61
50 51 4.215399 ACATAACACAACGATCAACCAAGG 59.785 41.667 0.00 0.00 0.00 3.61
51 52 2.341846 ACACAACGATCAACCAAGGT 57.658 45.000 0.00 0.00 0.00 3.50
87 88 3.318384 TGTGGGCGCCAAGAGCTA 61.318 61.111 30.85 3.53 40.39 3.32
94 95 2.421877 GCGCCAAGAGCTATAGCGGA 62.422 60.000 22.28 0.00 46.50 5.54
102 103 4.044484 CTATAGCGGAGGCGCGCT 62.044 66.667 32.29 17.27 46.35 5.92
103 104 3.559657 CTATAGCGGAGGCGCGCTT 62.560 63.158 32.29 26.12 46.35 4.68
115 275 2.721231 GCGCTTGCCTTTGTGTCA 59.279 55.556 0.00 0.00 0.00 3.58
118 278 1.466360 GCGCTTGCCTTTGTGTCATAG 60.466 52.381 0.00 0.00 0.00 2.23
123 283 4.673580 GCTTGCCTTTGTGTCATAGATGTG 60.674 45.833 0.00 0.00 0.00 3.21
135 295 8.724229 TGTGTCATAGATGTGAGAAAATCTTTG 58.276 33.333 0.00 0.00 34.91 2.77
136 296 8.180267 GTGTCATAGATGTGAGAAAATCTTTGG 58.820 37.037 0.00 0.00 34.51 3.28
137 297 7.148188 TGTCATAGATGTGAGAAAATCTTTGGC 60.148 37.037 0.00 0.00 37.15 4.52
138 298 6.319658 TCATAGATGTGAGAAAATCTTTGGCC 59.680 38.462 0.00 0.00 34.51 5.36
139 299 4.410099 AGATGTGAGAAAATCTTTGGCCA 58.590 39.130 0.00 0.00 28.51 5.36
140 300 5.021458 AGATGTGAGAAAATCTTTGGCCAT 58.979 37.500 6.09 0.00 28.51 4.40
141 301 4.524316 TGTGAGAAAATCTTTGGCCATG 57.476 40.909 6.09 2.48 0.00 3.66
142 302 3.896888 TGTGAGAAAATCTTTGGCCATGT 59.103 39.130 6.09 0.00 0.00 3.21
143 303 4.344679 TGTGAGAAAATCTTTGGCCATGTT 59.655 37.500 6.09 0.00 0.00 2.71
144 304 5.163322 TGTGAGAAAATCTTTGGCCATGTTT 60.163 36.000 6.09 2.60 0.00 2.83
145 305 6.041409 TGTGAGAAAATCTTTGGCCATGTTTA 59.959 34.615 6.09 0.00 0.00 2.01
146 306 6.587608 GTGAGAAAATCTTTGGCCATGTTTAG 59.412 38.462 6.09 0.00 0.00 1.85
147 307 6.493115 TGAGAAAATCTTTGGCCATGTTTAGA 59.507 34.615 6.09 5.37 0.00 2.10
148 308 7.178983 TGAGAAAATCTTTGGCCATGTTTAGAT 59.821 33.333 6.09 7.59 0.00 1.98
149 309 8.593945 AGAAAATCTTTGGCCATGTTTAGATA 57.406 30.769 6.09 0.00 0.00 1.98
150 310 8.470002 AGAAAATCTTTGGCCATGTTTAGATAC 58.530 33.333 6.09 6.24 0.00 2.24
151 311 7.961326 AAATCTTTGGCCATGTTTAGATACT 57.039 32.000 6.09 0.00 0.00 2.12
152 312 7.573968 AATCTTTGGCCATGTTTAGATACTC 57.426 36.000 6.09 0.00 0.00 2.59
153 313 6.313519 TCTTTGGCCATGTTTAGATACTCT 57.686 37.500 6.09 0.00 0.00 3.24
154 314 7.432148 TCTTTGGCCATGTTTAGATACTCTA 57.568 36.000 6.09 0.00 0.00 2.43
155 315 7.857456 TCTTTGGCCATGTTTAGATACTCTAA 58.143 34.615 6.09 0.00 37.20 2.10
156 316 7.769044 TCTTTGGCCATGTTTAGATACTCTAAC 59.231 37.037 6.09 0.00 38.56 2.34
157 317 6.808321 TGGCCATGTTTAGATACTCTAACT 57.192 37.500 0.00 0.00 38.56 2.24
158 318 6.817184 TGGCCATGTTTAGATACTCTAACTC 58.183 40.000 0.00 0.00 38.56 3.01
159 319 6.382859 TGGCCATGTTTAGATACTCTAACTCA 59.617 38.462 0.00 1.26 38.56 3.41
160 320 6.926272 GGCCATGTTTAGATACTCTAACTCAG 59.074 42.308 0.00 0.00 38.56 3.35
161 321 7.418025 GGCCATGTTTAGATACTCTAACTCAGT 60.418 40.741 0.00 0.00 38.56 3.41
162 322 7.982354 GCCATGTTTAGATACTCTAACTCAGTT 59.018 37.037 0.00 0.00 38.56 3.16
182 342 9.793259 CTCAGTTAGAGGATAGAGTTAGATTCT 57.207 37.037 0.00 0.00 40.84 2.40
189 349 9.362151 AGAGGATAGAGTTAGATTCTAACCTTG 57.638 37.037 25.81 0.00 45.22 3.61
190 350 9.357161 GAGGATAGAGTTAGATTCTAACCTTGA 57.643 37.037 25.81 13.76 45.22 3.02
191 351 9.716556 AGGATAGAGTTAGATTCTAACCTTGAA 57.283 33.333 25.81 12.52 43.76 2.69
192 352 9.752961 GGATAGAGTTAGATTCTAACCTTGAAC 57.247 37.037 25.81 15.84 37.22 3.18
197 357 9.368674 GAGTTAGATTCTAACCTTGAACTAACC 57.631 37.037 25.81 4.05 37.89 2.85
198 358 8.319881 AGTTAGATTCTAACCTTGAACTAACCC 58.680 37.037 25.81 3.69 37.89 4.11
199 359 6.954352 AGATTCTAACCTTGAACTAACCCT 57.046 37.500 0.00 0.00 0.00 4.34
200 360 9.551339 TTAGATTCTAACCTTGAACTAACCCTA 57.449 33.333 1.90 0.00 0.00 3.53
201 361 8.080363 AGATTCTAACCTTGAACTAACCCTAG 57.920 38.462 0.00 0.00 0.00 3.02
202 362 7.899709 AGATTCTAACCTTGAACTAACCCTAGA 59.100 37.037 0.00 0.00 0.00 2.43
203 363 6.847421 TCTAACCTTGAACTAACCCTAGAC 57.153 41.667 0.00 0.00 0.00 2.59
204 364 6.559429 TCTAACCTTGAACTAACCCTAGACT 58.441 40.000 0.00 0.00 0.00 3.24
205 365 7.702785 TCTAACCTTGAACTAACCCTAGACTA 58.297 38.462 0.00 0.00 0.00 2.59
206 366 8.172741 TCTAACCTTGAACTAACCCTAGACTAA 58.827 37.037 0.00 0.00 0.00 2.24
207 367 6.602410 ACCTTGAACTAACCCTAGACTAAC 57.398 41.667 0.00 0.00 0.00 2.34
208 368 6.321321 ACCTTGAACTAACCCTAGACTAACT 58.679 40.000 0.00 0.00 0.00 2.24
209 369 6.436847 ACCTTGAACTAACCCTAGACTAACTC 59.563 42.308 0.00 0.00 0.00 3.01
210 370 6.664384 CCTTGAACTAACCCTAGACTAACTCT 59.336 42.308 0.00 0.00 0.00 3.24
211 371 7.833183 CCTTGAACTAACCCTAGACTAACTCTA 59.167 40.741 0.00 0.00 0.00 2.43
212 372 9.240734 CTTGAACTAACCCTAGACTAACTCTAA 57.759 37.037 0.00 0.00 30.58 2.10
213 373 8.572855 TGAACTAACCCTAGACTAACTCTAAC 57.427 38.462 0.00 0.00 30.58 2.34
214 374 7.613411 TGAACTAACCCTAGACTAACTCTAACC 59.387 40.741 0.00 0.00 30.58 2.85
215 375 7.037342 ACTAACCCTAGACTAACTCTAACCA 57.963 40.000 0.00 0.00 30.58 3.67
216 376 7.473593 ACTAACCCTAGACTAACTCTAACCAA 58.526 38.462 0.00 0.00 30.58 3.67
217 377 7.952368 ACTAACCCTAGACTAACTCTAACCAAA 59.048 37.037 0.00 0.00 30.58 3.28
218 378 6.854091 ACCCTAGACTAACTCTAACCAAAG 57.146 41.667 0.00 0.00 30.58 2.77
219 379 6.559429 ACCCTAGACTAACTCTAACCAAAGA 58.441 40.000 0.00 0.00 30.58 2.52
221 381 6.406065 CCCTAGACTAACTCTAACCAAAGAGC 60.406 46.154 0.86 0.00 45.81 4.09
222 382 6.378848 CCTAGACTAACTCTAACCAAAGAGCT 59.621 42.308 0.86 0.00 45.81 4.09
223 383 6.031751 AGACTAACTCTAACCAAAGAGCTG 57.968 41.667 0.00 0.00 45.81 4.24
224 384 5.540719 AGACTAACTCTAACCAAAGAGCTGT 59.459 40.000 0.00 0.00 45.81 4.40
225 385 6.042208 AGACTAACTCTAACCAAAGAGCTGTT 59.958 38.462 0.00 0.00 45.81 3.16
226 386 6.592870 ACTAACTCTAACCAAAGAGCTGTTT 58.407 36.000 2.40 2.40 45.81 2.83
227 387 5.757850 AACTCTAACCAAAGAGCTGTTTG 57.242 39.130 25.33 25.33 45.81 2.93
235 395 4.691860 CAAAGAGCTGTTTGGATGGTAG 57.308 45.455 24.75 0.55 34.34 3.18
236 396 3.356529 AAGAGCTGTTTGGATGGTAGG 57.643 47.619 0.00 0.00 0.00 3.18
237 397 1.561542 AGAGCTGTTTGGATGGTAGGG 59.438 52.381 0.00 0.00 0.00 3.53
238 398 1.282157 GAGCTGTTTGGATGGTAGGGT 59.718 52.381 0.00 0.00 0.00 4.34
239 399 1.710809 AGCTGTTTGGATGGTAGGGTT 59.289 47.619 0.00 0.00 0.00 4.11
240 400 2.916934 AGCTGTTTGGATGGTAGGGTTA 59.083 45.455 0.00 0.00 0.00 2.85
241 401 3.054361 AGCTGTTTGGATGGTAGGGTTAG 60.054 47.826 0.00 0.00 0.00 2.34
242 402 3.054655 GCTGTTTGGATGGTAGGGTTAGA 60.055 47.826 0.00 0.00 0.00 2.10
243 403 4.385310 GCTGTTTGGATGGTAGGGTTAGAT 60.385 45.833 0.00 0.00 0.00 1.98
244 404 5.755849 CTGTTTGGATGGTAGGGTTAGATT 58.244 41.667 0.00 0.00 0.00 2.40
245 405 5.505780 TGTTTGGATGGTAGGGTTAGATTG 58.494 41.667 0.00 0.00 0.00 2.67
246 406 5.251932 TGTTTGGATGGTAGGGTTAGATTGA 59.748 40.000 0.00 0.00 0.00 2.57
247 407 5.367945 TTGGATGGTAGGGTTAGATTGAC 57.632 43.478 0.00 0.00 0.00 3.18
248 408 4.367166 TGGATGGTAGGGTTAGATTGACA 58.633 43.478 0.00 0.00 0.00 3.58
249 409 4.785914 TGGATGGTAGGGTTAGATTGACAA 59.214 41.667 0.00 0.00 0.00 3.18
250 410 5.431731 TGGATGGTAGGGTTAGATTGACAAT 59.568 40.000 0.00 0.00 0.00 2.71
251 411 6.617784 TGGATGGTAGGGTTAGATTGACAATA 59.382 38.462 0.00 0.00 0.00 1.90
252 412 7.128109 TGGATGGTAGGGTTAGATTGACAATAA 59.872 37.037 0.00 0.00 0.00 1.40
253 413 7.996644 GGATGGTAGGGTTAGATTGACAATAAA 59.003 37.037 0.00 0.00 0.00 1.40
254 414 9.574516 GATGGTAGGGTTAGATTGACAATAAAT 57.425 33.333 0.00 0.00 0.00 1.40
279 439 9.965902 ATATTCTTTCTCAACCATTTGACTACT 57.034 29.630 0.00 0.00 36.79 2.57
280 440 8.697507 ATTCTTTCTCAACCATTTGACTACTT 57.302 30.769 0.00 0.00 36.79 2.24
281 441 8.519799 TTCTTTCTCAACCATTTGACTACTTT 57.480 30.769 0.00 0.00 36.79 2.66
282 442 7.930217 TCTTTCTCAACCATTTGACTACTTTG 58.070 34.615 0.00 0.00 36.79 2.77
283 443 6.633500 TTCTCAACCATTTGACTACTTTGG 57.367 37.500 0.00 0.00 36.79 3.28
284 444 5.935945 TCTCAACCATTTGACTACTTTGGA 58.064 37.500 0.00 0.00 36.79 3.53
285 445 5.763204 TCTCAACCATTTGACTACTTTGGAC 59.237 40.000 0.00 0.00 36.79 4.02
286 446 4.825085 TCAACCATTTGACTACTTTGGACC 59.175 41.667 0.00 0.00 36.79 4.46
287 447 4.447138 ACCATTTGACTACTTTGGACCA 57.553 40.909 0.00 0.00 0.00 4.02
288 448 4.998051 ACCATTTGACTACTTTGGACCAT 58.002 39.130 0.00 0.00 0.00 3.55
289 449 4.766891 ACCATTTGACTACTTTGGACCATG 59.233 41.667 0.00 0.00 0.00 3.66
290 450 4.766891 CCATTTGACTACTTTGGACCATGT 59.233 41.667 0.00 0.03 0.00 3.21
291 451 5.243730 CCATTTGACTACTTTGGACCATGTT 59.756 40.000 0.00 0.00 0.00 2.71
292 452 6.239289 CCATTTGACTACTTTGGACCATGTTT 60.239 38.462 0.00 0.00 0.00 2.83
293 453 5.766150 TTGACTACTTTGGACCATGTTTG 57.234 39.130 0.00 0.00 0.00 2.93
295 455 4.141367 TGACTACTTTGGACCATGTTTGGA 60.141 41.667 0.00 0.00 46.92 3.53
296 456 4.998051 ACTACTTTGGACCATGTTTGGAT 58.002 39.130 0.00 0.00 46.92 3.41
297 457 4.766891 ACTACTTTGGACCATGTTTGGATG 59.233 41.667 0.00 0.00 46.92 3.51
298 458 3.843422 ACTTTGGACCATGTTTGGATGA 58.157 40.909 0.00 0.00 46.92 2.92
299 459 3.828451 ACTTTGGACCATGTTTGGATGAG 59.172 43.478 0.00 0.00 46.92 2.90
300 460 3.805066 TTGGACCATGTTTGGATGAGA 57.195 42.857 0.00 0.00 46.92 3.27
301 461 3.354948 TGGACCATGTTTGGATGAGAG 57.645 47.619 0.00 0.00 46.92 3.20
302 462 2.025981 TGGACCATGTTTGGATGAGAGG 60.026 50.000 0.00 0.00 46.92 3.69
303 463 2.648059 GACCATGTTTGGATGAGAGGG 58.352 52.381 0.00 0.00 46.92 4.30
304 464 2.239654 GACCATGTTTGGATGAGAGGGA 59.760 50.000 0.00 0.00 46.92 4.20
305 465 2.854967 ACCATGTTTGGATGAGAGGGAT 59.145 45.455 0.00 0.00 46.92 3.85
306 466 4.047166 ACCATGTTTGGATGAGAGGGATA 58.953 43.478 0.00 0.00 46.92 2.59
307 467 4.478317 ACCATGTTTGGATGAGAGGGATAA 59.522 41.667 0.00 0.00 46.92 1.75
308 468 4.823989 CCATGTTTGGATGAGAGGGATAAC 59.176 45.833 0.00 0.00 46.92 1.89
309 469 5.398353 CCATGTTTGGATGAGAGGGATAACT 60.398 44.000 0.00 0.00 46.92 2.24
310 470 5.779241 TGTTTGGATGAGAGGGATAACTT 57.221 39.130 0.00 0.00 0.00 2.66
311 471 6.139679 TGTTTGGATGAGAGGGATAACTTT 57.860 37.500 0.00 0.00 0.00 2.66
312 472 6.552008 TGTTTGGATGAGAGGGATAACTTTT 58.448 36.000 0.00 0.00 0.00 2.27
313 473 7.010160 TGTTTGGATGAGAGGGATAACTTTTT 58.990 34.615 0.00 0.00 0.00 1.94
356 516 5.279456 GGCCTTTGTATGAATTTGGTCAACT 60.279 40.000 0.00 0.00 0.00 3.16
360 520 9.410556 CCTTTGTATGAATTTGGTCAACTTAAG 57.589 33.333 0.00 0.00 0.00 1.85
365 525 6.317789 TGAATTTGGTCAACTTAAGCAGAG 57.682 37.500 1.29 0.00 0.00 3.35
439 601 0.323542 ACAGGGAGTACGTGAGAGGG 60.324 60.000 1.09 0.00 38.32 4.30
441 603 0.323542 AGGGAGTACGTGAGAGGGTG 60.324 60.000 0.00 0.00 0.00 4.61
444 609 1.946475 GAGTACGTGAGAGGGTGGCC 61.946 65.000 0.00 0.00 0.00 5.36
450 615 1.152030 TGAGAGGGTGGCCTCACTT 60.152 57.895 11.66 1.20 43.17 3.16
456 621 3.414700 GTGGCCTCACTTGACGCG 61.415 66.667 3.53 3.53 40.58 6.01
501 681 2.027625 CGGACGCAGAAACCCAGAC 61.028 63.158 0.00 0.00 0.00 3.51
502 682 1.671379 GGACGCAGAAACCCAGACC 60.671 63.158 0.00 0.00 0.00 3.85
583 769 1.413118 CATAAATGCAACCCCCTCCC 58.587 55.000 0.00 0.00 0.00 4.30
584 770 1.062962 CATAAATGCAACCCCCTCCCT 60.063 52.381 0.00 0.00 0.00 4.20
585 771 0.629058 TAAATGCAACCCCCTCCCTC 59.371 55.000 0.00 0.00 0.00 4.30
586 772 2.168272 AAATGCAACCCCCTCCCTCC 62.168 60.000 0.00 0.00 0.00 4.30
589 775 2.692741 CAACCCCCTCCCTCCCTC 60.693 72.222 0.00 0.00 0.00 4.30
623 820 0.902048 CACAGACTCCCAGAGGCAGA 60.902 60.000 0.00 0.00 40.81 4.26
624 821 0.614415 ACAGACTCCCAGAGGCAGAG 60.614 60.000 0.00 0.00 40.81 3.35
627 824 3.847602 CTCCCAGAGGCAGAGGCG 61.848 72.222 0.00 0.00 42.47 5.52
811 1361 4.416738 GAGGCAGGCCACCAGTCC 62.417 72.222 16.52 2.62 38.92 3.85
815 1365 3.569210 CAGGCCACCAGTCCACCA 61.569 66.667 5.01 0.00 0.00 4.17
878 1428 1.798813 CACTAAAAAGAAGCGACGCCT 59.201 47.619 17.79 2.37 0.00 5.52
1131 1734 2.190578 CAGATGTTCGGGGGAGGC 59.809 66.667 0.00 0.00 0.00 4.70
1357 1984 1.153667 CTCTCCGAGAAGGTGCTGC 60.154 63.158 0.00 0.00 41.99 5.25
1376 2030 1.294780 CCCTGAGTTTCGCTCTGCT 59.705 57.895 0.00 0.00 44.41 4.24
1382 2036 2.290641 TGAGTTTCGCTCTGCTTTTTCC 59.709 45.455 0.00 0.00 44.41 3.13
1399 2053 2.103934 CGCTCTTCTCGCCCTCTG 59.896 66.667 0.00 0.00 0.00 3.35
1424 2078 3.434319 CGGCCGCTCATTGCTTGT 61.434 61.111 14.67 0.00 40.11 3.16
1441 2095 3.060070 GCTTGTTTGCTTGCTTGATTGAC 60.060 43.478 0.00 0.00 0.00 3.18
1442 2096 3.096489 TGTTTGCTTGCTTGATTGACC 57.904 42.857 0.00 0.00 0.00 4.02
1526 2181 0.110486 ATTCCAACAAGGTCGGCACT 59.890 50.000 0.00 0.00 39.02 4.40
1564 2222 2.156917 CAACCGTCCCCCTTTACTTTC 58.843 52.381 0.00 0.00 0.00 2.62
1570 2228 3.428532 GTCCCCCTTTACTTTCCTTTCC 58.571 50.000 0.00 0.00 0.00 3.13
1769 2446 4.601084 TGAGTAGAGGCTAACTTGCTAGT 58.399 43.478 0.00 0.00 35.68 2.57
1770 2447 5.752650 TGAGTAGAGGCTAACTTGCTAGTA 58.247 41.667 0.00 0.00 33.17 1.82
1771 2448 5.823570 TGAGTAGAGGCTAACTTGCTAGTAG 59.176 44.000 0.00 1.40 33.17 2.57
1815 2492 3.628032 TCCAAACTGCAAACATTGACGTA 59.372 39.130 0.00 0.00 0.00 3.57
1818 2495 2.151202 ACTGCAAACATTGACGTAGGG 58.849 47.619 0.00 0.00 0.00 3.53
1820 2497 0.170339 GCAAACATTGACGTAGGGGC 59.830 55.000 0.00 0.00 0.00 5.80
1823 2500 1.821216 AACATTGACGTAGGGGCAAG 58.179 50.000 0.00 0.00 0.00 4.01
1824 2501 0.690762 ACATTGACGTAGGGGCAAGT 59.309 50.000 0.00 0.00 0.00 3.16
1825 2502 1.086696 CATTGACGTAGGGGCAAGTG 58.913 55.000 0.00 0.00 0.00 3.16
1826 2503 0.676782 ATTGACGTAGGGGCAAGTGC 60.677 55.000 0.00 0.00 41.14 4.40
1849 2528 2.632987 ACTGTGGGTGTTGTCCTTAC 57.367 50.000 0.00 0.00 0.00 2.34
1874 2553 7.875041 ACTGATTCTTTATCCAATCGATAGTGG 59.125 37.037 9.50 9.50 34.87 4.00
1876 2555 7.872993 TGATTCTTTATCCAATCGATAGTGGAC 59.127 37.037 18.83 6.58 46.53 4.02
1879 2558 8.112016 TCTTTATCCAATCGATAGTGGACTAG 57.888 38.462 18.83 15.42 46.53 2.57
1880 2559 6.835819 TTATCCAATCGATAGTGGACTAGG 57.164 41.667 18.83 2.21 46.53 3.02
1892 2575 0.702316 GGACTAGGGCTGGGGAAAAA 59.298 55.000 0.00 0.00 0.00 1.94
1895 2578 3.441101 GACTAGGGCTGGGGAAAAATTT 58.559 45.455 0.00 0.00 0.00 1.82
1913 2596 0.107752 TTCACACAGCACAGCAGTGA 60.108 50.000 19.13 12.91 46.46 3.41
1914 2597 0.531311 TCACACAGCACAGCAGTGAG 60.531 55.000 19.13 12.37 46.46 3.51
1916 2599 0.812811 ACACAGCACAGCAGTGAGTG 60.813 55.000 23.79 23.79 46.46 3.51
1917 2600 0.531311 CACAGCACAGCAGTGAGTGA 60.531 55.000 22.17 0.00 46.46 3.41
1918 2601 2.725774 CACAGCACAGCAGTGAGTGAC 61.726 57.143 22.17 9.99 46.46 3.67
1919 2602 4.991060 CACAGCACAGCAGTGAGTGACT 62.991 54.545 22.17 11.61 46.46 3.41
1932 2627 5.182190 CAGTGAGTGACTACTTTCTGCTCTA 59.818 44.000 0.00 0.00 37.25 2.43
1942 2637 4.489810 ACTTTCTGCTCTATCGAGTGTTG 58.510 43.478 0.00 0.00 39.53 3.33
1959 2659 6.019801 CGAGTGTTGTTAGCCACATCTTATAC 60.020 42.308 0.00 0.00 34.43 1.47
1970 2670 6.540189 AGCCACATCTTATACAACTGTTGATC 59.460 38.462 26.00 0.00 0.00 2.92
1976 2676 9.388506 CATCTTATACAACTGTTGATCTCCTTT 57.611 33.333 26.00 4.54 0.00 3.11
1995 2701 6.397272 TCCTTTGATTCACATTTGTAATGCC 58.603 36.000 0.00 0.00 0.00 4.40
2003 2709 5.639757 TCACATTTGTAATGCCGATCAAAG 58.360 37.500 0.00 0.00 34.17 2.77
2105 2816 4.752101 GCTATATTCAGTTGGTAGGTGCTG 59.248 45.833 0.00 0.00 0.00 4.41
2109 2820 4.471904 TTCAGTTGGTAGGTGCTGATAG 57.528 45.455 0.00 0.00 37.74 2.08
2176 2887 5.716703 AGTATTAATGCAGAGTTTTTGCCCT 59.283 36.000 6.31 0.00 40.81 5.19
2180 2891 1.888512 TGCAGAGTTTTTGCCCTGATC 59.111 47.619 0.00 0.00 40.81 2.92
2306 3021 3.497942 GGTGTTAGTGGGAGAAATGTGGT 60.498 47.826 0.00 0.00 0.00 4.16
2331 3046 3.023949 AAGCTCTGGGGCAGTAGCG 62.024 63.158 0.00 0.00 43.41 4.26
2476 3191 0.032130 TCACTTGGAGTCGTCACAGC 59.968 55.000 0.00 0.00 0.00 4.40
2526 3255 0.531200 CCTCCGAGGTAACACAGGTC 59.469 60.000 6.24 0.00 41.41 3.85
2532 3261 2.764572 CGAGGTAACACAGGTCCCTTAT 59.235 50.000 0.00 0.00 41.41 1.73
2536 3265 5.567430 AGGTAACACAGGTCCCTTATTTTC 58.433 41.667 0.00 0.00 41.41 2.29
2539 3268 3.671716 ACACAGGTCCCTTATTTTCGAC 58.328 45.455 0.00 0.00 0.00 4.20
2540 3269 3.071892 ACACAGGTCCCTTATTTTCGACA 59.928 43.478 0.00 0.00 0.00 4.35
2541 3270 3.684788 CACAGGTCCCTTATTTTCGACAG 59.315 47.826 0.00 0.00 0.00 3.51
2590 3319 8.579006 AGATTTTTCTCACAACATGCATTCTTA 58.421 29.630 0.00 0.00 0.00 2.10
2721 3453 4.953667 TGTTGCCAGCATTTTCATTTGTA 58.046 34.783 0.00 0.00 0.00 2.41
2722 3454 4.749099 TGTTGCCAGCATTTTCATTTGTAC 59.251 37.500 0.00 0.00 0.00 2.90
2749 3481 5.413213 CGGACACCACACCTTTTCATATTAA 59.587 40.000 0.00 0.00 0.00 1.40
2750 3482 6.094881 CGGACACCACACCTTTTCATATTAAT 59.905 38.462 0.00 0.00 0.00 1.40
2751 3483 7.257722 GGACACCACACCTTTTCATATTAATG 58.742 38.462 0.00 0.00 0.00 1.90
2755 3487 8.685427 CACCACACCTTTTCATATTAATGATGA 58.315 33.333 0.00 1.46 41.73 2.92
3036 3768 4.864247 CACAACATACCATTGCTTTTAGCC 59.136 41.667 0.00 0.00 41.51 3.93
3064 3796 5.415701 CCTTTTAGACTAAGGCTGCATTTGA 59.584 40.000 14.72 0.00 36.08 2.69
3110 3842 4.875536 ACAACTTTTCCAACCAGATTTTGC 59.124 37.500 0.00 0.00 0.00 3.68
3116 3848 5.659440 TTCCAACCAGATTTTGCCTATTC 57.341 39.130 0.00 0.00 0.00 1.75
3156 3888 1.508632 TGTTCTTGCTTCGTGGCTAC 58.491 50.000 0.00 0.00 0.00 3.58
3159 3891 2.543777 TCTTGCTTCGTGGCTACTTT 57.456 45.000 0.00 0.00 0.00 2.66
3165 3897 1.275291 CTTCGTGGCTACTTTCCCTCA 59.725 52.381 0.00 0.00 0.00 3.86
3172 3904 3.961408 TGGCTACTTTCCCTCAGTAGATC 59.039 47.826 10.63 3.56 44.60 2.75
3182 3950 5.962433 TCCCTCAGTAGATCGTAAAAACAG 58.038 41.667 0.00 0.00 0.00 3.16
3234 4002 2.839228 ACTGAGCCTAAGGAGTTGGAT 58.161 47.619 0.00 0.00 0.00 3.41
3268 4044 9.912634 CAACCTGATTGCTAGATTAAAAGAAAA 57.087 29.630 0.00 0.00 0.00 2.29
3286 4062 4.922103 AGAAAATAGTTCGAACTGACGGTC 59.078 41.667 35.24 24.56 40.07 4.79
3317 4093 3.261643 TGTCATGTTGTCTAGGATGTGCT 59.738 43.478 0.00 0.00 0.00 4.40
3318 4094 4.256920 GTCATGTTGTCTAGGATGTGCTT 58.743 43.478 0.00 0.00 0.00 3.91
3326 4102 7.230510 TGTTGTCTAGGATGTGCTTAAAACATT 59.769 33.333 5.23 0.00 38.37 2.71
3329 4105 7.611467 TGTCTAGGATGTGCTTAAAACATTGAT 59.389 33.333 5.23 0.00 38.37 2.57
3387 4163 4.022359 ACCCTGGACTCCCTGTAAATAT 57.978 45.455 0.00 0.00 0.00 1.28
3397 4173 5.815740 ACTCCCTGTAAATATAAACACTGCG 59.184 40.000 0.00 0.00 0.00 5.18
3457 4233 6.760291 AGTAGTTGACTAAGAAGACTTTGGG 58.240 40.000 0.00 0.00 36.27 4.12
3459 4235 3.418684 TGACTAAGAAGACTTTGGGGC 57.581 47.619 0.00 0.00 37.53 5.80
3465 4241 6.181190 ACTAAGAAGACTTTGGGGCTAATTC 58.819 40.000 0.00 0.00 37.53 2.17
3469 4245 5.420104 AGAAGACTTTGGGGCTAATTCAATG 59.580 40.000 0.00 0.00 29.69 2.82
3475 4251 1.681264 GGGGCTAATTCAATGGGTTCG 59.319 52.381 0.00 0.00 0.00 3.95
3489 4265 2.367241 TGGGTTCGATGACTTCAGTGAA 59.633 45.455 5.25 5.25 0.00 3.18
3545 4321 6.206829 CCAACCTAGCCCAATTTATTACTAGC 59.793 42.308 0.00 0.00 0.00 3.42
3547 4323 5.071384 ACCTAGCCCAATTTATTACTAGCGT 59.929 40.000 0.00 0.00 0.00 5.07
3548 4324 5.638234 CCTAGCCCAATTTATTACTAGCGTC 59.362 44.000 0.00 0.00 0.00 5.19
3550 4326 5.298347 AGCCCAATTTATTACTAGCGTCTC 58.702 41.667 0.00 0.00 0.00 3.36
3551 4327 5.070580 AGCCCAATTTATTACTAGCGTCTCT 59.929 40.000 0.00 0.00 0.00 3.10
3552 4328 5.758784 GCCCAATTTATTACTAGCGTCTCTT 59.241 40.000 0.00 0.00 0.00 2.85
3573 4349 8.567948 TCTCTTTAACATCATCAACTGTTTTCC 58.432 33.333 0.00 0.00 36.92 3.13
3576 4352 3.843422 ACATCATCAACTGTTTTCCCCA 58.157 40.909 0.00 0.00 0.00 4.96
3577 4353 4.419282 ACATCATCAACTGTTTTCCCCAT 58.581 39.130 0.00 0.00 0.00 4.00
3578 4354 4.221262 ACATCATCAACTGTTTTCCCCATG 59.779 41.667 0.00 0.00 0.00 3.66
3579 4355 2.562298 TCATCAACTGTTTTCCCCATGC 59.438 45.455 0.00 0.00 0.00 4.06
3582 4364 3.420893 TCAACTGTTTTCCCCATGCTAG 58.579 45.455 0.00 0.00 0.00 3.42
3592 4374 2.158158 TCCCCATGCTAGTACCTGCTAT 60.158 50.000 8.77 0.07 0.00 2.97
3601 4388 5.481824 TGCTAGTACCTGCTATGATTGCTAT 59.518 40.000 8.77 0.00 0.00 2.97
3605 4392 6.595682 AGTACCTGCTATGATTGCTATGTTT 58.404 36.000 0.00 0.00 0.00 2.83
3725 4512 3.194062 GACAGCAGCTTAGGAAGTGATC 58.806 50.000 0.00 0.00 0.00 2.92
3732 4519 3.055530 AGCTTAGGAAGTGATCACCAGTG 60.056 47.826 22.21 7.64 0.00 3.66
3790 4577 0.589223 ACGTAGCTCAGCGATCTAGC 59.411 55.000 11.35 0.00 36.48 3.42
3831 4618 3.054878 CAGTCAAAGCTTTGCCAATCAC 58.945 45.455 30.35 22.12 38.05 3.06
3836 4623 2.283145 AGCTTTGCCAATCACTGACT 57.717 45.000 0.00 0.00 0.00 3.41
3837 4624 1.884579 AGCTTTGCCAATCACTGACTG 59.115 47.619 0.00 0.00 0.00 3.51
3838 4625 1.881973 GCTTTGCCAATCACTGACTGA 59.118 47.619 0.00 0.00 0.00 3.41
3839 4626 2.490903 GCTTTGCCAATCACTGACTGAT 59.509 45.455 0.00 0.00 41.85 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 9.810545 TGTTATGTTCAGATTGTTCATCGTATA 57.189 29.630 0.00 0.00 36.93 1.47
9 10 8.604035 GTGTTATGTTCAGATTGTTCATCGTAT 58.396 33.333 0.00 0.00 36.93 3.06
10 11 7.600752 TGTGTTATGTTCAGATTGTTCATCGTA 59.399 33.333 0.00 0.00 36.93 3.43
11 12 6.426633 TGTGTTATGTTCAGATTGTTCATCGT 59.573 34.615 0.00 0.00 36.93 3.73
12 13 6.830736 TGTGTTATGTTCAGATTGTTCATCG 58.169 36.000 0.00 0.00 36.93 3.84
13 14 7.269084 CGTTGTGTTATGTTCAGATTGTTCATC 59.731 37.037 0.00 0.00 0.00 2.92
14 15 7.041440 TCGTTGTGTTATGTTCAGATTGTTCAT 60.041 33.333 0.00 0.00 0.00 2.57
15 16 6.258947 TCGTTGTGTTATGTTCAGATTGTTCA 59.741 34.615 0.00 0.00 0.00 3.18
16 17 6.655062 TCGTTGTGTTATGTTCAGATTGTTC 58.345 36.000 0.00 0.00 0.00 3.18
17 18 6.612247 TCGTTGTGTTATGTTCAGATTGTT 57.388 33.333 0.00 0.00 0.00 2.83
18 19 6.426633 TGATCGTTGTGTTATGTTCAGATTGT 59.573 34.615 0.00 0.00 0.00 2.71
19 20 6.830736 TGATCGTTGTGTTATGTTCAGATTG 58.169 36.000 0.00 0.00 0.00 2.67
20 21 7.298122 GTTGATCGTTGTGTTATGTTCAGATT 58.702 34.615 0.00 0.00 0.00 2.40
21 22 6.128282 GGTTGATCGTTGTGTTATGTTCAGAT 60.128 38.462 0.00 0.00 0.00 2.90
22 23 5.178623 GGTTGATCGTTGTGTTATGTTCAGA 59.821 40.000 0.00 0.00 0.00 3.27
23 24 5.049749 TGGTTGATCGTTGTGTTATGTTCAG 60.050 40.000 0.00 0.00 0.00 3.02
24 25 4.816925 TGGTTGATCGTTGTGTTATGTTCA 59.183 37.500 0.00 0.00 0.00 3.18
25 26 5.351233 TGGTTGATCGTTGTGTTATGTTC 57.649 39.130 0.00 0.00 0.00 3.18
26 27 5.278266 CCTTGGTTGATCGTTGTGTTATGTT 60.278 40.000 0.00 0.00 0.00 2.71
27 28 4.215399 CCTTGGTTGATCGTTGTGTTATGT 59.785 41.667 0.00 0.00 0.00 2.29
28 29 4.215399 ACCTTGGTTGATCGTTGTGTTATG 59.785 41.667 0.00 0.00 0.00 1.90
29 30 4.215399 CACCTTGGTTGATCGTTGTGTTAT 59.785 41.667 0.00 0.00 0.00 1.89
30 31 3.562141 CACCTTGGTTGATCGTTGTGTTA 59.438 43.478 0.00 0.00 0.00 2.41
31 32 2.357637 CACCTTGGTTGATCGTTGTGTT 59.642 45.455 0.00 0.00 0.00 3.32
32 33 1.946768 CACCTTGGTTGATCGTTGTGT 59.053 47.619 0.00 0.00 0.00 3.72
33 34 1.266718 CCACCTTGGTTGATCGTTGTG 59.733 52.381 0.00 0.00 31.35 3.33
34 35 1.604604 CCACCTTGGTTGATCGTTGT 58.395 50.000 0.00 0.00 31.35 3.32
35 36 0.240945 GCCACCTTGGTTGATCGTTG 59.759 55.000 0.00 0.00 40.46 4.10
36 37 0.110486 AGCCACCTTGGTTGATCGTT 59.890 50.000 0.00 0.00 40.46 3.85
37 38 0.981183 TAGCCACCTTGGTTGATCGT 59.019 50.000 0.00 0.00 40.46 3.73
38 39 1.942657 CATAGCCACCTTGGTTGATCG 59.057 52.381 0.00 0.00 40.46 3.69
39 40 2.945668 GACATAGCCACCTTGGTTGATC 59.054 50.000 0.00 0.00 40.46 2.92
40 41 2.578021 AGACATAGCCACCTTGGTTGAT 59.422 45.455 0.00 0.00 40.46 2.57
41 42 1.985159 AGACATAGCCACCTTGGTTGA 59.015 47.619 0.00 0.00 40.46 3.18
42 43 2.026822 AGAGACATAGCCACCTTGGTTG 60.027 50.000 0.00 0.00 40.46 3.77
43 44 2.269940 AGAGACATAGCCACCTTGGTT 58.730 47.619 0.00 0.00 40.46 3.67
44 45 1.958288 AGAGACATAGCCACCTTGGT 58.042 50.000 0.00 0.00 40.46 3.67
45 46 2.636830 CAAGAGACATAGCCACCTTGG 58.363 52.381 0.00 0.00 41.55 3.61
46 47 2.636830 CCAAGAGACATAGCCACCTTG 58.363 52.381 0.00 0.00 0.00 3.61
47 48 1.065126 GCCAAGAGACATAGCCACCTT 60.065 52.381 0.00 0.00 0.00 3.50
48 49 0.543749 GCCAAGAGACATAGCCACCT 59.456 55.000 0.00 0.00 0.00 4.00
49 50 0.464554 GGCCAAGAGACATAGCCACC 60.465 60.000 0.00 0.00 43.32 4.61
50 51 0.811616 CGGCCAAGAGACATAGCCAC 60.812 60.000 2.24 0.00 44.06 5.01
51 52 1.264749 ACGGCCAAGAGACATAGCCA 61.265 55.000 2.24 0.00 44.06 4.75
80 81 1.960612 CGCCTCCGCTATAGCTCTT 59.039 57.895 21.98 0.00 39.32 2.85
97 98 2.427410 GACACAAAGGCAAGCGCG 60.427 61.111 0.00 0.00 39.92 6.86
99 100 2.076100 TCTATGACACAAAGGCAAGCG 58.924 47.619 0.00 0.00 39.98 4.68
100 101 3.441572 ACATCTATGACACAAAGGCAAGC 59.558 43.478 0.00 0.00 39.98 4.01
101 102 4.696877 TCACATCTATGACACAAAGGCAAG 59.303 41.667 0.00 0.00 39.98 4.01
102 103 4.650734 TCACATCTATGACACAAAGGCAA 58.349 39.130 0.00 0.00 39.98 4.52
103 104 4.020307 TCTCACATCTATGACACAAAGGCA 60.020 41.667 0.00 0.00 41.62 4.75
105 106 7.439157 TTTTCTCACATCTATGACACAAAGG 57.561 36.000 0.00 0.00 0.00 3.11
109 269 8.724229 CAAAGATTTTCTCACATCTATGACACA 58.276 33.333 0.00 0.00 0.00 3.72
115 275 6.189859 TGGCCAAAGATTTTCTCACATCTAT 58.810 36.000 0.61 0.00 0.00 1.98
118 278 4.789012 TGGCCAAAGATTTTCTCACATC 57.211 40.909 0.61 0.00 0.00 3.06
123 283 6.924111 TCTAAACATGGCCAAAGATTTTCTC 58.076 36.000 10.96 0.00 0.00 2.87
154 314 9.930158 AATCTAACTCTATCCTCTAACTGAGTT 57.070 33.333 2.37 2.37 43.96 3.01
155 315 9.569122 GAATCTAACTCTATCCTCTAACTGAGT 57.431 37.037 0.00 0.00 41.11 3.41
156 316 9.793259 AGAATCTAACTCTATCCTCTAACTGAG 57.207 37.037 0.00 0.00 42.30 3.35
163 323 9.362151 CAAGGTTAGAATCTAACTCTATCCTCT 57.638 37.037 26.42 13.43 41.60 3.69
164 324 9.357161 TCAAGGTTAGAATCTAACTCTATCCTC 57.643 37.037 26.42 11.72 41.60 3.71
165 325 9.716556 TTCAAGGTTAGAATCTAACTCTATCCT 57.283 33.333 26.42 14.94 43.14 3.24
166 326 9.752961 GTTCAAGGTTAGAATCTAACTCTATCC 57.247 37.037 26.42 13.20 36.26 2.59
171 331 9.368674 GGTTAGTTCAAGGTTAGAATCTAACTC 57.631 37.037 26.42 18.44 38.26 3.01
172 332 8.319881 GGGTTAGTTCAAGGTTAGAATCTAACT 58.680 37.037 26.42 13.45 38.26 2.24
173 333 8.319881 AGGGTTAGTTCAAGGTTAGAATCTAAC 58.680 37.037 21.48 21.48 37.95 2.34
174 334 8.445361 AGGGTTAGTTCAAGGTTAGAATCTAA 57.555 34.615 0.00 0.00 0.00 2.10
175 335 9.198475 CTAGGGTTAGTTCAAGGTTAGAATCTA 57.802 37.037 0.00 0.00 0.00 1.98
176 336 6.954352 AGGGTTAGTTCAAGGTTAGAATCT 57.046 37.500 0.00 0.00 0.00 2.40
177 337 7.980662 GTCTAGGGTTAGTTCAAGGTTAGAATC 59.019 40.741 0.00 0.00 0.00 2.52
178 338 7.679025 AGTCTAGGGTTAGTTCAAGGTTAGAAT 59.321 37.037 0.00 0.00 0.00 2.40
179 339 7.015064 AGTCTAGGGTTAGTTCAAGGTTAGAA 58.985 38.462 0.00 0.00 0.00 2.10
180 340 6.559429 AGTCTAGGGTTAGTTCAAGGTTAGA 58.441 40.000 0.00 0.00 0.00 2.10
181 341 6.854091 AGTCTAGGGTTAGTTCAAGGTTAG 57.146 41.667 0.00 0.00 0.00 2.34
182 342 7.952368 AGTTAGTCTAGGGTTAGTTCAAGGTTA 59.048 37.037 0.00 0.00 0.00 2.85
183 343 6.786461 AGTTAGTCTAGGGTTAGTTCAAGGTT 59.214 38.462 0.00 0.00 0.00 3.50
184 344 6.321321 AGTTAGTCTAGGGTTAGTTCAAGGT 58.679 40.000 0.00 0.00 0.00 3.50
185 345 6.664384 AGAGTTAGTCTAGGGTTAGTTCAAGG 59.336 42.308 0.00 0.00 31.71 3.61
186 346 7.706100 AGAGTTAGTCTAGGGTTAGTTCAAG 57.294 40.000 0.00 0.00 31.71 3.02
187 347 9.018582 GTTAGAGTTAGTCTAGGGTTAGTTCAA 57.981 37.037 0.00 0.00 39.05 2.69
188 348 7.613411 GGTTAGAGTTAGTCTAGGGTTAGTTCA 59.387 40.741 0.00 0.00 39.05 3.18
189 349 7.613411 TGGTTAGAGTTAGTCTAGGGTTAGTTC 59.387 40.741 0.00 0.00 39.05 3.01
190 350 7.473593 TGGTTAGAGTTAGTCTAGGGTTAGTT 58.526 38.462 0.00 0.00 39.05 2.24
191 351 7.037342 TGGTTAGAGTTAGTCTAGGGTTAGT 57.963 40.000 0.00 0.00 39.05 2.24
192 352 7.951347 TTGGTTAGAGTTAGTCTAGGGTTAG 57.049 40.000 0.00 0.00 39.05 2.34
193 353 8.172741 TCTTTGGTTAGAGTTAGTCTAGGGTTA 58.827 37.037 0.00 0.00 39.05 2.85
194 354 7.015064 TCTTTGGTTAGAGTTAGTCTAGGGTT 58.985 38.462 0.00 0.00 39.05 4.11
195 355 6.559429 TCTTTGGTTAGAGTTAGTCTAGGGT 58.441 40.000 0.00 0.00 39.05 4.34
196 356 6.406065 GCTCTTTGGTTAGAGTTAGTCTAGGG 60.406 46.154 0.00 0.00 42.93 3.53
197 357 6.378848 AGCTCTTTGGTTAGAGTTAGTCTAGG 59.621 42.308 0.00 0.00 42.93 3.02
198 358 7.094118 ACAGCTCTTTGGTTAGAGTTAGTCTAG 60.094 40.741 0.00 0.00 42.93 2.43
199 359 6.720288 ACAGCTCTTTGGTTAGAGTTAGTCTA 59.280 38.462 0.00 0.00 42.93 2.59
200 360 5.540719 ACAGCTCTTTGGTTAGAGTTAGTCT 59.459 40.000 0.00 0.00 42.93 3.24
201 361 5.785243 ACAGCTCTTTGGTTAGAGTTAGTC 58.215 41.667 0.00 0.00 42.93 2.59
202 362 5.810080 ACAGCTCTTTGGTTAGAGTTAGT 57.190 39.130 0.00 0.00 42.93 2.24
203 363 6.073003 CCAAACAGCTCTTTGGTTAGAGTTAG 60.073 42.308 21.68 0.00 43.67 2.34
204 364 5.763204 CCAAACAGCTCTTTGGTTAGAGTTA 59.237 40.000 21.68 0.00 43.67 2.24
205 365 4.580580 CCAAACAGCTCTTTGGTTAGAGTT 59.419 41.667 21.68 0.00 43.67 3.01
206 366 4.137543 CCAAACAGCTCTTTGGTTAGAGT 58.862 43.478 21.68 0.00 43.67 3.24
207 367 4.756084 CCAAACAGCTCTTTGGTTAGAG 57.244 45.455 21.68 0.00 43.67 2.43
214 374 3.441572 CCTACCATCCAAACAGCTCTTTG 59.558 47.826 7.43 7.43 0.00 2.77
215 375 3.562176 CCCTACCATCCAAACAGCTCTTT 60.562 47.826 0.00 0.00 0.00 2.52
216 376 2.025887 CCCTACCATCCAAACAGCTCTT 60.026 50.000 0.00 0.00 0.00 2.85
217 377 1.561542 CCCTACCATCCAAACAGCTCT 59.438 52.381 0.00 0.00 0.00 4.09
218 378 1.282157 ACCCTACCATCCAAACAGCTC 59.718 52.381 0.00 0.00 0.00 4.09
219 379 1.372501 ACCCTACCATCCAAACAGCT 58.627 50.000 0.00 0.00 0.00 4.24
220 380 2.215942 AACCCTACCATCCAAACAGC 57.784 50.000 0.00 0.00 0.00 4.40
221 381 4.837093 TCTAACCCTACCATCCAAACAG 57.163 45.455 0.00 0.00 0.00 3.16
222 382 5.251932 TCAATCTAACCCTACCATCCAAACA 59.748 40.000 0.00 0.00 0.00 2.83
223 383 5.589050 GTCAATCTAACCCTACCATCCAAAC 59.411 44.000 0.00 0.00 0.00 2.93
224 384 5.251932 TGTCAATCTAACCCTACCATCCAAA 59.748 40.000 0.00 0.00 0.00 3.28
225 385 4.785914 TGTCAATCTAACCCTACCATCCAA 59.214 41.667 0.00 0.00 0.00 3.53
226 386 4.367166 TGTCAATCTAACCCTACCATCCA 58.633 43.478 0.00 0.00 0.00 3.41
227 387 5.367945 TTGTCAATCTAACCCTACCATCC 57.632 43.478 0.00 0.00 0.00 3.51
228 388 8.974060 TTTATTGTCAATCTAACCCTACCATC 57.026 34.615 0.07 0.00 0.00 3.51
253 413 9.965902 AGTAGTCAAATGGTTGAGAAAGAATAT 57.034 29.630 0.00 0.00 44.44 1.28
254 414 9.793259 AAGTAGTCAAATGGTTGAGAAAGAATA 57.207 29.630 0.00 0.00 44.44 1.75
255 415 8.697507 AAGTAGTCAAATGGTTGAGAAAGAAT 57.302 30.769 0.00 0.00 44.44 2.40
256 416 8.405531 CAAAGTAGTCAAATGGTTGAGAAAGAA 58.594 33.333 0.00 0.00 44.44 2.52
257 417 7.013274 CCAAAGTAGTCAAATGGTTGAGAAAGA 59.987 37.037 0.00 0.00 44.44 2.52
258 418 7.013274 TCCAAAGTAGTCAAATGGTTGAGAAAG 59.987 37.037 0.00 0.00 44.44 2.62
259 419 6.831353 TCCAAAGTAGTCAAATGGTTGAGAAA 59.169 34.615 0.00 0.00 44.44 2.52
260 420 6.262273 GTCCAAAGTAGTCAAATGGTTGAGAA 59.738 38.462 0.00 0.00 44.44 2.87
261 421 5.763204 GTCCAAAGTAGTCAAATGGTTGAGA 59.237 40.000 0.00 0.00 44.44 3.27
262 422 5.048713 GGTCCAAAGTAGTCAAATGGTTGAG 60.049 44.000 0.00 0.00 44.44 3.02
263 423 4.825085 GGTCCAAAGTAGTCAAATGGTTGA 59.175 41.667 0.00 0.00 41.57 3.18
264 424 4.582656 TGGTCCAAAGTAGTCAAATGGTTG 59.417 41.667 0.00 0.00 35.95 3.77
265 425 4.798882 TGGTCCAAAGTAGTCAAATGGTT 58.201 39.130 0.00 0.00 32.90 3.67
266 426 4.447138 TGGTCCAAAGTAGTCAAATGGT 57.553 40.909 0.00 0.00 32.90 3.55
267 427 4.766891 ACATGGTCCAAAGTAGTCAAATGG 59.233 41.667 0.00 0.00 0.00 3.16
268 428 5.964958 ACATGGTCCAAAGTAGTCAAATG 57.035 39.130 0.00 0.00 0.00 2.32
269 429 6.239289 CCAAACATGGTCCAAAGTAGTCAAAT 60.239 38.462 0.00 0.00 0.00 2.32
270 430 5.068460 CCAAACATGGTCCAAAGTAGTCAAA 59.932 40.000 0.00 0.00 0.00 2.69
271 431 4.582656 CCAAACATGGTCCAAAGTAGTCAA 59.417 41.667 0.00 0.00 0.00 3.18
272 432 4.141287 CCAAACATGGTCCAAAGTAGTCA 58.859 43.478 0.00 0.00 0.00 3.41
273 433 4.394729 TCCAAACATGGTCCAAAGTAGTC 58.605 43.478 0.00 0.00 0.00 2.59
274 434 4.447138 TCCAAACATGGTCCAAAGTAGT 57.553 40.909 0.00 0.00 0.00 2.73
275 435 5.009631 TCATCCAAACATGGTCCAAAGTAG 58.990 41.667 0.00 0.00 0.00 2.57
276 436 4.991776 TCATCCAAACATGGTCCAAAGTA 58.008 39.130 0.00 0.00 0.00 2.24
277 437 3.828451 CTCATCCAAACATGGTCCAAAGT 59.172 43.478 0.00 0.00 0.00 2.66
278 438 4.081406 TCTCATCCAAACATGGTCCAAAG 58.919 43.478 0.00 0.00 0.00 2.77
279 439 4.081406 CTCTCATCCAAACATGGTCCAAA 58.919 43.478 0.00 0.00 0.00 3.28
280 440 3.561960 CCTCTCATCCAAACATGGTCCAA 60.562 47.826 0.00 0.00 0.00 3.53
281 441 2.025981 CCTCTCATCCAAACATGGTCCA 60.026 50.000 0.00 0.00 0.00 4.02
282 442 2.648059 CCTCTCATCCAAACATGGTCC 58.352 52.381 0.00 0.00 0.00 4.46
283 443 2.239654 TCCCTCTCATCCAAACATGGTC 59.760 50.000 0.00 0.00 0.00 4.02
284 444 2.278245 TCCCTCTCATCCAAACATGGT 58.722 47.619 0.00 0.00 0.00 3.55
285 445 3.589951 ATCCCTCTCATCCAAACATGG 57.410 47.619 0.00 0.00 0.00 3.66
286 446 5.688807 AGTTATCCCTCTCATCCAAACATG 58.311 41.667 0.00 0.00 0.00 3.21
287 447 5.983333 AGTTATCCCTCTCATCCAAACAT 57.017 39.130 0.00 0.00 0.00 2.71
288 448 5.779241 AAGTTATCCCTCTCATCCAAACA 57.221 39.130 0.00 0.00 0.00 2.83
289 449 7.468141 AAAAAGTTATCCCTCTCATCCAAAC 57.532 36.000 0.00 0.00 0.00 2.93
321 481 5.636123 TCATACAAAGGCCCACTAGAAAAA 58.364 37.500 0.00 0.00 0.00 1.94
322 482 5.249780 TCATACAAAGGCCCACTAGAAAA 57.750 39.130 0.00 0.00 0.00 2.29
323 483 4.919774 TCATACAAAGGCCCACTAGAAA 57.080 40.909 0.00 0.00 0.00 2.52
324 484 4.919774 TTCATACAAAGGCCCACTAGAA 57.080 40.909 0.00 0.00 0.00 2.10
325 485 5.450818 AATTCATACAAAGGCCCACTAGA 57.549 39.130 0.00 0.00 0.00 2.43
326 486 5.163519 CCAAATTCATACAAAGGCCCACTAG 60.164 44.000 0.00 0.00 0.00 2.57
327 487 4.709397 CCAAATTCATACAAAGGCCCACTA 59.291 41.667 0.00 0.00 0.00 2.74
328 488 3.515104 CCAAATTCATACAAAGGCCCACT 59.485 43.478 0.00 0.00 0.00 4.00
329 489 3.260632 ACCAAATTCATACAAAGGCCCAC 59.739 43.478 0.00 0.00 0.00 4.61
330 490 3.513515 GACCAAATTCATACAAAGGCCCA 59.486 43.478 0.00 0.00 0.00 5.36
331 491 3.513515 TGACCAAATTCATACAAAGGCCC 59.486 43.478 0.00 0.00 0.00 5.80
332 492 4.799564 TGACCAAATTCATACAAAGGCC 57.200 40.909 0.00 0.00 0.00 5.19
333 493 5.783111 AGTTGACCAAATTCATACAAAGGC 58.217 37.500 0.00 0.00 0.00 4.35
334 494 9.410556 CTTAAGTTGACCAAATTCATACAAAGG 57.589 33.333 0.00 0.00 30.75 3.11
335 495 8.915654 GCTTAAGTTGACCAAATTCATACAAAG 58.084 33.333 4.02 0.00 30.75 2.77
336 496 8.417106 TGCTTAAGTTGACCAAATTCATACAAA 58.583 29.630 4.02 0.00 30.75 2.83
337 497 7.946207 TGCTTAAGTTGACCAAATTCATACAA 58.054 30.769 4.02 0.00 30.75 2.41
338 498 7.446931 TCTGCTTAAGTTGACCAAATTCATACA 59.553 33.333 4.02 0.00 30.75 2.29
339 499 7.816640 TCTGCTTAAGTTGACCAAATTCATAC 58.183 34.615 4.02 0.00 30.75 2.39
356 516 5.827797 ACCAAGTCAAATCAACTCTGCTTAA 59.172 36.000 0.00 0.00 0.00 1.85
360 520 4.515191 TGTACCAAGTCAAATCAACTCTGC 59.485 41.667 0.00 0.00 0.00 4.26
365 525 5.575019 ACGTTTGTACCAAGTCAAATCAAC 58.425 37.500 0.00 0.00 36.25 3.18
414 574 2.033372 TCACGTACTCCCTGTGTTTCA 58.967 47.619 0.00 0.00 35.20 2.69
415 575 2.295349 TCTCACGTACTCCCTGTGTTTC 59.705 50.000 0.00 0.00 35.20 2.78
419 581 0.811915 CCTCTCACGTACTCCCTGTG 59.188 60.000 0.00 0.00 34.96 3.66
444 609 2.022129 GGTGTCCGCGTCAAGTGAG 61.022 63.158 4.92 0.00 0.00 3.51
469 649 2.603473 TCCGGGGTCTCTGTGGTG 60.603 66.667 0.00 0.00 0.00 4.17
501 681 0.618458 TCATCGGTTCCTTCCTTGGG 59.382 55.000 0.00 0.00 0.00 4.12
502 682 2.014068 GCTCATCGGTTCCTTCCTTGG 61.014 57.143 0.00 0.00 0.00 3.61
578 764 4.548513 CGGAGGGAGGGAGGGAGG 62.549 77.778 0.00 0.00 0.00 4.30
586 772 4.463879 CTGTGCTGCGGAGGGAGG 62.464 72.222 5.93 0.00 31.27 4.30
623 820 4.093291 CTCTTCTGCCTGCCGCCT 62.093 66.667 0.00 0.00 36.24 5.52
627 824 0.884514 GTTTTCCTCTTCTGCCTGCC 59.115 55.000 0.00 0.00 0.00 4.85
922 1489 2.598467 GAGCGGGAGGAGAGAGGA 59.402 66.667 0.00 0.00 0.00 3.71
1376 2030 0.953960 GGGCGAGAAGAGCGGAAAAA 60.954 55.000 0.00 0.00 35.00 1.94
1382 2036 2.103934 CAGAGGGCGAGAAGAGCG 59.896 66.667 0.00 0.00 35.00 5.03
1424 2078 1.000385 CCGGTCAATCAAGCAAGCAAA 60.000 47.619 0.00 0.00 0.00 3.68
1526 2181 2.721231 GTTTTGCTGTGCTGCCGA 59.279 55.556 0.00 0.00 0.00 5.54
1537 2192 2.732016 GGGGACGGTTGGTTTTGC 59.268 61.111 0.00 0.00 0.00 3.68
1564 2222 3.191371 CGAAATTCAGGGACAAGGAAAGG 59.809 47.826 0.00 0.00 0.00 3.11
1608 2266 2.483877 TGAACACACGCATTCAGATTCC 59.516 45.455 0.00 0.00 31.29 3.01
1769 2446 8.682710 GGACCATCAGTTAAAATAAATGCACTA 58.317 33.333 0.00 0.00 0.00 2.74
1770 2447 7.178274 TGGACCATCAGTTAAAATAAATGCACT 59.822 33.333 0.00 0.00 0.00 4.40
1771 2448 7.319646 TGGACCATCAGTTAAAATAAATGCAC 58.680 34.615 0.00 0.00 0.00 4.57
1823 2500 0.951558 CAACACCCACAGTAAGGCAC 59.048 55.000 0.00 0.00 0.00 5.01
1824 2501 0.548989 ACAACACCCACAGTAAGGCA 59.451 50.000 0.00 0.00 0.00 4.75
1825 2502 1.235724 GACAACACCCACAGTAAGGC 58.764 55.000 0.00 0.00 0.00 4.35
1826 2503 1.420138 AGGACAACACCCACAGTAAGG 59.580 52.381 0.00 0.00 0.00 2.69
1849 2528 8.090831 TCCACTATCGATTGGATAAAGAATCAG 58.909 37.037 13.71 0.00 36.96 2.90
1874 2553 2.828661 ATTTTTCCCCAGCCCTAGTC 57.171 50.000 0.00 0.00 0.00 2.59
1876 2555 3.195610 GTGAAATTTTTCCCCAGCCCTAG 59.804 47.826 0.00 0.00 36.36 3.02
1879 2558 1.696884 TGTGAAATTTTTCCCCAGCCC 59.303 47.619 0.00 0.00 36.36 5.19
1880 2559 2.103941 TGTGTGAAATTTTTCCCCAGCC 59.896 45.455 0.00 0.00 36.36 4.85
1892 2575 1.683943 ACTGCTGTGCTGTGTGAAAT 58.316 45.000 0.00 0.00 39.15 2.17
1913 2596 5.186942 TCGATAGAGCAGAAAGTAGTCACT 58.813 41.667 0.00 0.00 42.67 3.41
1914 2597 5.487153 TCGATAGAGCAGAAAGTAGTCAC 57.513 43.478 0.00 0.00 42.67 3.67
1932 2627 2.831685 TGTGGCTAACAACACTCGAT 57.168 45.000 0.00 0.00 38.39 3.59
1942 2637 7.333423 TCAACAGTTGTATAAGATGTGGCTAAC 59.667 37.037 13.14 0.00 0.00 2.34
1959 2659 6.016860 TGTGAATCAAAGGAGATCAACAGTTG 60.017 38.462 6.99 6.99 0.00 3.16
1970 2670 6.532657 GGCATTACAAATGTGAATCAAAGGAG 59.467 38.462 0.00 0.00 0.00 3.69
1976 2676 5.356470 TGATCGGCATTACAAATGTGAATCA 59.644 36.000 0.00 5.59 0.00 2.57
2003 2709 6.260271 GGAAACTAGCCCTAACATATCAACAC 59.740 42.308 0.00 0.00 0.00 3.32
2148 2859 7.274250 GGCAAAAACTCTGCATTAATACTTGAG 59.726 37.037 0.00 7.34 41.78 3.02
2149 2860 7.090173 GGCAAAAACTCTGCATTAATACTTGA 58.910 34.615 0.00 0.00 41.78 3.02
2161 2872 1.203287 GGATCAGGGCAAAAACTCTGC 59.797 52.381 0.00 0.00 39.16 4.26
2306 3021 3.970410 CCCCAGAGCTTGGTGCCA 61.970 66.667 12.18 0.00 46.25 4.92
2331 3046 2.691011 TGAACTTTGGTTTACAGGTGGC 59.309 45.455 0.00 0.00 35.58 5.01
2476 3191 3.434309 ACTGAAATGATTGAAGGTGGGG 58.566 45.455 0.00 0.00 0.00 4.96
2511 3226 0.974383 AAGGGACCTGTGTTACCTCG 59.026 55.000 0.00 0.00 32.78 4.63
2526 3255 8.765219 CAGTACAATATCTGTCGAAAATAAGGG 58.235 37.037 0.00 0.00 39.64 3.95
2532 3261 6.931838 ACCTCAGTACAATATCTGTCGAAAA 58.068 36.000 0.00 0.00 39.64 2.29
2536 3265 6.330278 TGAAACCTCAGTACAATATCTGTCG 58.670 40.000 0.00 0.00 39.64 4.35
2539 3268 6.878317 TCCTGAAACCTCAGTACAATATCTG 58.122 40.000 0.00 0.00 46.71 2.90
2540 3269 7.400339 TCTTCCTGAAACCTCAGTACAATATCT 59.600 37.037 0.00 0.00 46.71 1.98
2541 3270 7.556844 TCTTCCTGAAACCTCAGTACAATATC 58.443 38.462 0.00 0.00 46.71 1.63
2590 3319 5.375417 TCGCAACATCATCTTCAAAACAT 57.625 34.783 0.00 0.00 0.00 2.71
2722 3454 4.619227 AAGGTGTGGTGTCCGCGG 62.619 66.667 22.12 22.12 36.72 6.46
2749 3481 1.410648 GGTGAAGGGGCATGTCATCAT 60.411 52.381 0.00 0.00 34.21 2.45
2750 3482 0.034186 GGTGAAGGGGCATGTCATCA 60.034 55.000 0.00 0.00 0.00 3.07
2751 3483 0.753111 GGGTGAAGGGGCATGTCATC 60.753 60.000 0.00 0.00 0.00 2.92
2755 3487 3.672503 GGGGGTGAAGGGGCATGT 61.673 66.667 0.00 0.00 0.00 3.21
3036 3768 4.081420 TGCAGCCTTAGTCTAAAAGGAGAG 60.081 45.833 5.69 0.00 45.41 3.20
3110 3842 3.195661 GTTAGCCGAACCACAGAATAGG 58.804 50.000 0.00 0.00 31.20 2.57
3116 3848 0.736325 CCTCGTTAGCCGAACCACAG 60.736 60.000 0.00 0.00 46.75 3.66
3142 3874 1.519408 GGAAAGTAGCCACGAAGCAA 58.481 50.000 0.00 0.00 34.23 3.91
3156 3888 6.872020 TGTTTTTACGATCTACTGAGGGAAAG 59.128 38.462 0.00 0.00 0.00 2.62
3159 3891 5.713389 TCTGTTTTTACGATCTACTGAGGGA 59.287 40.000 0.00 0.00 0.00 4.20
3165 3897 6.586844 GCTGAACTCTGTTTTTACGATCTACT 59.413 38.462 0.00 0.00 0.00 2.57
3172 3904 2.033236 TGCGCTGAACTCTGTTTTTACG 60.033 45.455 9.73 0.00 0.00 3.18
3182 3950 4.337763 CTGAATTATGTTGCGCTGAACTC 58.662 43.478 9.73 0.00 0.00 3.01
3234 4002 1.133513 AGCAATCAGGTTGGACCACAA 60.134 47.619 0.00 0.00 41.95 3.33
3268 4044 2.095532 CGAGACCGTCAGTTCGAACTAT 59.904 50.000 29.28 13.17 37.08 2.12
3286 4062 5.573282 CCTAGACAACATGACAGTAAACGAG 59.427 44.000 0.00 0.00 0.00 4.18
3387 4163 2.080693 CATTACTGGCCGCAGTGTTTA 58.919 47.619 5.99 0.00 36.68 2.01
3397 4173 4.585879 TCTTACCTGTTTCATTACTGGCC 58.414 43.478 0.00 0.00 39.87 5.36
3431 4207 7.715686 CCCAAAGTCTTCTTAGTCAACTACTTT 59.284 37.037 0.00 0.00 39.80 2.66
3432 4208 7.217906 CCCAAAGTCTTCTTAGTCAACTACTT 58.782 38.462 0.00 0.00 39.80 2.24
3433 4209 6.239629 CCCCAAAGTCTTCTTAGTCAACTACT 60.240 42.308 0.00 0.00 42.62 2.57
3457 4233 3.882888 TCATCGAACCCATTGAATTAGCC 59.117 43.478 0.00 0.00 0.00 3.93
3459 4235 6.316140 TGAAGTCATCGAACCCATTGAATTAG 59.684 38.462 0.00 0.00 0.00 1.73
3465 4241 3.125829 CACTGAAGTCATCGAACCCATTG 59.874 47.826 0.00 0.00 0.00 2.82
3469 4245 2.743636 TCACTGAAGTCATCGAACCC 57.256 50.000 0.00 0.00 0.00 4.11
3475 4251 3.817647 AGGTTGCTTTCACTGAAGTCATC 59.182 43.478 0.00 0.00 0.00 2.92
3489 4265 3.965888 CCTGAAGGCTAGGTTGCTT 57.034 52.632 0.00 0.00 0.00 3.91
3511 4287 1.407025 GGGCTAGGTTGGTTAGCTCAC 60.407 57.143 0.00 0.00 42.83 3.51
3545 4321 6.712241 ACAGTTGATGATGTTAAAGAGACG 57.288 37.500 0.00 0.00 0.00 4.18
3547 4323 8.567948 GGAAAACAGTTGATGATGTTAAAGAGA 58.432 33.333 0.00 0.00 38.66 3.10
3548 4324 7.809806 GGGAAAACAGTTGATGATGTTAAAGAG 59.190 37.037 0.00 0.00 38.66 2.85
3550 4326 6.868339 GGGGAAAACAGTTGATGATGTTAAAG 59.132 38.462 0.00 0.00 38.66 1.85
3551 4327 6.325028 TGGGGAAAACAGTTGATGATGTTAAA 59.675 34.615 0.00 0.00 38.66 1.52
3552 4328 5.835819 TGGGGAAAACAGTTGATGATGTTAA 59.164 36.000 0.00 0.00 38.66 2.01
3573 4349 2.899900 TCATAGCAGGTACTAGCATGGG 59.100 50.000 11.58 0.79 36.02 4.00
3576 4352 4.285517 AGCAATCATAGCAGGTACTAGCAT 59.714 41.667 11.58 2.49 36.02 3.79
3577 4353 3.643320 AGCAATCATAGCAGGTACTAGCA 59.357 43.478 11.58 0.57 36.02 3.49
3578 4354 4.264460 AGCAATCATAGCAGGTACTAGC 57.736 45.455 0.00 0.00 36.02 3.42
3579 4355 6.929625 ACATAGCAATCATAGCAGGTACTAG 58.070 40.000 0.00 0.00 36.02 2.57
3582 4364 6.483307 TCAAACATAGCAATCATAGCAGGTAC 59.517 38.462 0.00 0.00 0.00 3.34
3592 4374 8.358895 TGTTCTTTTGATCAAACATAGCAATCA 58.641 29.630 20.35 9.37 0.00 2.57
3605 4392 7.282224 CGGGGTAGATAATTGTTCTTTTGATCA 59.718 37.037 0.00 0.00 0.00 2.92
3624 4411 3.769844 AGATATAGGAATGCACGGGGTAG 59.230 47.826 0.00 0.00 0.00 3.18
3627 4414 3.703001 AAGATATAGGAATGCACGGGG 57.297 47.619 0.00 0.00 0.00 5.73
3725 4512 1.202533 ACTTCTTCGGTGTCACTGGTG 60.203 52.381 11.94 5.46 0.00 4.17
3751 4538 2.125552 CGTCATCCTGCCTTCGCA 60.126 61.111 0.00 0.00 44.78 5.10
3768 4555 0.378962 AGATCGCTGAGCTACGTCAC 59.621 55.000 1.78 0.00 0.00 3.67
3831 4618 3.701532 GGTAACGGAGAGATCAGTCAG 57.298 52.381 0.00 0.00 0.00 3.51
3872 4660 1.916697 GCTCAGGCCGCTTCAAGAAC 61.917 60.000 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.