Multiple sequence alignment - TraesCS7A01G126500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G126500 chr7A 100.000 3323 0 0 1 3323 81502706 81499384 0.000000e+00 6137.0
1 TraesCS7A01G126500 chr7A 100.000 1646 0 0 3517 5162 81499190 81497545 0.000000e+00 3040.0
2 TraesCS7A01G126500 chr7B 92.860 2745 107 25 645 3321 25326019 25323296 0.000000e+00 3901.0
3 TraesCS7A01G126500 chr7B 93.177 1539 68 18 3634 5162 25322448 25320937 0.000000e+00 2226.0
4 TraesCS7A01G126500 chr7B 95.000 40 2 0 482 521 97514311 97514272 4.320000e-06 63.9
5 TraesCS7A01G126500 chr7D 92.294 2764 95 48 622 3321 78042403 78039694 0.000000e+00 3816.0
6 TraesCS7A01G126500 chr7D 92.879 1657 66 19 3517 5161 78039451 78037835 0.000000e+00 2359.0
7 TraesCS7A01G126500 chr7D 98.333 300 5 0 2 301 47200019 47200318 1.270000e-145 527.0
8 TraesCS7A01G126500 chr7D 98.000 300 6 0 2 301 592380664 592380365 5.920000e-144 521.0
9 TraesCS7A01G126500 chr7D 79.688 128 24 2 427 552 474264661 474264534 1.980000e-14 91.6
10 TraesCS7A01G126500 chr7D 76.048 167 35 5 389 552 76628359 76628523 1.190000e-11 82.4
11 TraesCS7A01G126500 chr2A 98.333 300 5 0 2 301 767885352 767885053 1.270000e-145 527.0
12 TraesCS7A01G126500 chr2A 94.167 240 14 0 1679 1918 92186495 92186734 2.940000e-97 366.0
13 TraesCS7A01G126500 chr2A 81.034 116 18 3 4970 5085 644219592 644219703 7.120000e-14 89.8
14 TraesCS7A01G126500 chr2A 76.522 115 19 5 440 551 278461 278570 7.220000e-04 56.5
15 TraesCS7A01G126500 chrUn 98.000 300 6 0 2 301 447887245 447886946 5.920000e-144 521.0
16 TraesCS7A01G126500 chrUn 98.000 300 6 0 2 301 449753536 449753835 5.920000e-144 521.0
17 TraesCS7A01G126500 chrUn 98.000 300 6 0 2 301 470768649 470768948 5.920000e-144 521.0
18 TraesCS7A01G126500 chr5A 98.000 300 6 0 2 301 556876442 556876143 5.920000e-144 521.0
19 TraesCS7A01G126500 chr5A 98.000 300 6 0 2 301 637135194 637135493 5.920000e-144 521.0
20 TraesCS7A01G126500 chr5A 93.827 243 15 0 1679 1921 511920310 511920068 2.940000e-97 366.0
21 TraesCS7A01G126500 chr5A 78.676 136 23 6 389 521 687345174 687345042 9.210000e-13 86.1
22 TraesCS7A01G126500 chr5A 80.583 103 19 1 420 521 663315900 663316002 1.540000e-10 78.7
23 TraesCS7A01G126500 chr4A 98.000 300 6 0 2 301 50576576 50576277 5.920000e-144 521.0
24 TraesCS7A01G126500 chr6B 94.650 243 13 0 1679 1921 651364108 651363866 1.360000e-100 377.0
25 TraesCS7A01G126500 chr6B 94.167 240 14 0 1679 1918 671660174 671660413 2.940000e-97 366.0
26 TraesCS7A01G126500 chr6B 89.000 100 11 0 1084 1183 708625533 708625434 1.950000e-24 124.0
27 TraesCS7A01G126500 chr3B 94.583 240 13 0 1679 1918 748488041 748488280 6.310000e-99 372.0
28 TraesCS7A01G126500 chr6A 94.167 240 14 0 1679 1918 413093861 413094100 2.940000e-97 366.0
29 TraesCS7A01G126500 chr6A 88.000 100 12 0 1084 1183 611293816 611293717 9.080000e-23 119.0
30 TraesCS7A01G126500 chr6A 100.000 31 0 0 491 521 615037415 615037445 2.010000e-04 58.4
31 TraesCS7A01G126500 chr3A 94.167 240 14 0 1679 1918 189304982 189305221 2.940000e-97 366.0
32 TraesCS7A01G126500 chr1B 73.814 569 147 2 2589 3156 156853515 156852948 1.870000e-54 224.0
33 TraesCS7A01G126500 chr1B 91.892 37 3 0 353 389 588624576 588624540 9.000000e-03 52.8
34 TraesCS7A01G126500 chr1D 73.498 566 148 2 2589 3153 95866028 95866592 4.050000e-51 213.0
35 TraesCS7A01G126500 chr1A 73.322 566 149 2 2589 3153 91160541 91161105 1.880000e-49 207.0
36 TraesCS7A01G126500 chr1A 100.000 32 0 0 349 380 459096676 459096645 5.580000e-05 60.2
37 TraesCS7A01G126500 chr2B 83.544 158 16 8 4924 5080 397603320 397603468 6.970000e-29 139.0
38 TraesCS7A01G126500 chr5D 82.576 132 15 5 4930 5058 58019013 58019139 5.460000e-20 110.0
39 TraesCS7A01G126500 chr5D 96.875 32 1 0 353 384 553873435 553873404 3.000000e-03 54.7
40 TraesCS7A01G126500 chr5B 79.259 135 25 3 389 521 667842904 667843037 1.980000e-14 91.6
41 TraesCS7A01G126500 chr6D 94.595 37 2 0 353 389 430019493 430019457 2.010000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G126500 chr7A 81497545 81502706 5161 True 4588.5 6137 100.0000 1 5162 2 chr7A.!!$R1 5161
1 TraesCS7A01G126500 chr7B 25320937 25326019 5082 True 3063.5 3901 93.0185 645 5162 2 chr7B.!!$R2 4517
2 TraesCS7A01G126500 chr7D 78037835 78042403 4568 True 3087.5 3816 92.5865 622 5161 2 chr7D.!!$R3 4539
3 TraesCS7A01G126500 chr1B 156852948 156853515 567 True 224.0 224 73.8140 2589 3156 1 chr1B.!!$R1 567
4 TraesCS7A01G126500 chr1D 95866028 95866592 564 False 213.0 213 73.4980 2589 3153 1 chr1D.!!$F1 564
5 TraesCS7A01G126500 chr1A 91160541 91161105 564 False 207.0 207 73.3220 2589 3153 1 chr1A.!!$F1 564

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
424 425 0.032130 GACTGCGAAGGTGTCTGTGA 59.968 55.000 0.00 0.00 0.0 3.58 F
569 570 0.038892 TGACCTAAACGAGACGCACC 60.039 55.000 0.00 0.00 0.0 5.01 F
1253 1285 0.390340 TTCTGCTGTCTGTCGATGGC 60.390 55.000 0.00 0.00 0.0 4.40 F
1593 1633 0.462047 ACCGGCTGATGAATTCGTCC 60.462 55.000 22.07 9.09 0.0 4.79 F
1769 1824 1.464997 GCGCTTAAGGACTGTTTGAGG 59.535 52.381 0.00 0.00 0.0 3.86 F
3622 3762 0.179181 GTTGATGAGGTGCGTGCATG 60.179 55.000 0.09 0.09 0.0 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1593 1633 0.109272 TGCCACGCTTCTCTAAGACG 60.109 55.000 0.00 0.00 37.86 4.18 R
2376 2461 0.249741 ACACAGTACAGAACGTGGGC 60.250 55.000 0.00 0.00 37.11 5.36 R
2385 2470 5.232202 CACTCAACACACTAACACAGTACAG 59.768 44.000 0.00 0.00 34.98 2.74 R
3300 3393 1.202031 GCGTACTAGGTTGTTGCATGC 60.202 52.381 11.82 11.82 0.00 4.06 R
3681 4361 0.323725 GACCCATGGCCTCAACACAT 60.324 55.000 6.09 0.00 0.00 3.21 R
4592 5276 1.266867 TAACCCTACCGCAACCCTCC 61.267 60.000 0.00 0.00 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.309528 TCAAGTCTGCACTCGTTGTT 57.690 45.000 0.00 0.00 29.93 2.83
20 21 2.627945 TCAAGTCTGCACTCGTTGTTT 58.372 42.857 0.00 0.00 29.93 2.83
21 22 3.006940 TCAAGTCTGCACTCGTTGTTTT 58.993 40.909 0.00 0.00 29.93 2.43
22 23 3.063452 TCAAGTCTGCACTCGTTGTTTTC 59.937 43.478 0.00 0.00 29.93 2.29
23 24 1.940613 AGTCTGCACTCGTTGTTTTCC 59.059 47.619 0.00 0.00 0.00 3.13
24 25 1.940613 GTCTGCACTCGTTGTTTTCCT 59.059 47.619 0.00 0.00 0.00 3.36
25 26 1.939934 TCTGCACTCGTTGTTTTCCTG 59.060 47.619 0.00 0.00 0.00 3.86
26 27 1.939934 CTGCACTCGTTGTTTTCCTGA 59.060 47.619 0.00 0.00 0.00 3.86
27 28 1.668751 TGCACTCGTTGTTTTCCTGAC 59.331 47.619 0.00 0.00 0.00 3.51
28 29 1.668751 GCACTCGTTGTTTTCCTGACA 59.331 47.619 0.00 0.00 0.00 3.58
29 30 2.096819 GCACTCGTTGTTTTCCTGACAA 59.903 45.455 0.00 0.00 34.83 3.18
30 31 3.243068 GCACTCGTTGTTTTCCTGACAAT 60.243 43.478 0.00 0.00 39.03 2.71
31 32 4.024387 GCACTCGTTGTTTTCCTGACAATA 60.024 41.667 0.00 0.00 39.03 1.90
32 33 5.679906 CACTCGTTGTTTTCCTGACAATAG 58.320 41.667 0.00 0.00 39.03 1.73
33 34 5.236478 CACTCGTTGTTTTCCTGACAATAGT 59.764 40.000 0.00 0.00 39.03 2.12
34 35 6.422701 CACTCGTTGTTTTCCTGACAATAGTA 59.577 38.462 0.00 0.00 39.03 1.82
35 36 6.987992 ACTCGTTGTTTTCCTGACAATAGTAA 59.012 34.615 0.00 0.00 39.03 2.24
36 37 7.170998 ACTCGTTGTTTTCCTGACAATAGTAAG 59.829 37.037 0.00 0.00 39.03 2.34
37 38 7.211573 TCGTTGTTTTCCTGACAATAGTAAGA 58.788 34.615 0.00 0.00 39.03 2.10
38 39 7.876068 TCGTTGTTTTCCTGACAATAGTAAGAT 59.124 33.333 0.00 0.00 39.03 2.40
39 40 7.957484 CGTTGTTTTCCTGACAATAGTAAGATG 59.043 37.037 0.00 0.00 39.03 2.90
40 41 8.784043 GTTGTTTTCCTGACAATAGTAAGATGT 58.216 33.333 0.00 0.00 39.03 3.06
41 42 8.918202 TGTTTTCCTGACAATAGTAAGATGTT 57.082 30.769 0.00 0.00 0.00 2.71
46 47 9.832445 TTCCTGACAATAGTAAGATGTTAATCC 57.168 33.333 0.00 0.00 32.77 3.01
47 48 9.213777 TCCTGACAATAGTAAGATGTTAATCCT 57.786 33.333 0.00 0.00 32.77 3.24
60 61 7.978925 AGATGTTAATCCTATTAACCCTCAGG 58.021 38.462 16.09 0.00 34.81 3.86
61 62 7.794683 AGATGTTAATCCTATTAACCCTCAGGA 59.205 37.037 16.09 0.00 41.31 3.86
68 69 8.582891 ATCCTATTAACCCTCAGGATTTTAGT 57.417 34.615 0.00 0.00 43.84 2.24
69 70 8.401955 TCCTATTAACCCTCAGGATTTTAGTT 57.598 34.615 0.00 0.00 36.73 2.24
70 71 8.842764 TCCTATTAACCCTCAGGATTTTAGTTT 58.157 33.333 0.00 0.00 36.73 2.66
71 72 8.903820 CCTATTAACCCTCAGGATTTTAGTTTG 58.096 37.037 0.00 0.00 36.73 2.93
72 73 9.681062 CTATTAACCCTCAGGATTTTAGTTTGA 57.319 33.333 0.00 0.00 36.73 2.69
73 74 7.996098 TTAACCCTCAGGATTTTAGTTTGAG 57.004 36.000 0.00 0.00 36.73 3.02
74 75 4.336280 ACCCTCAGGATTTTAGTTTGAGC 58.664 43.478 0.00 0.00 35.18 4.26
75 76 4.202567 ACCCTCAGGATTTTAGTTTGAGCA 60.203 41.667 0.00 0.00 35.18 4.26
76 77 4.952335 CCCTCAGGATTTTAGTTTGAGCAT 59.048 41.667 0.00 0.00 35.18 3.79
77 78 5.163581 CCCTCAGGATTTTAGTTTGAGCATG 60.164 44.000 0.00 0.00 35.18 4.06
78 79 5.649395 CCTCAGGATTTTAGTTTGAGCATGA 59.351 40.000 0.00 0.00 35.18 3.07
79 80 6.151648 CCTCAGGATTTTAGTTTGAGCATGAA 59.848 38.462 0.00 0.00 35.18 2.57
80 81 7.149569 TCAGGATTTTAGTTTGAGCATGAAG 57.850 36.000 0.00 0.00 0.00 3.02
81 82 6.716628 TCAGGATTTTAGTTTGAGCATGAAGT 59.283 34.615 0.00 0.00 0.00 3.01
82 83 7.025963 CAGGATTTTAGTTTGAGCATGAAGTC 58.974 38.462 0.00 0.00 0.00 3.01
83 84 6.716628 AGGATTTTAGTTTGAGCATGAAGTCA 59.283 34.615 0.00 0.00 0.00 3.41
84 85 6.803807 GGATTTTAGTTTGAGCATGAAGTCAC 59.196 38.462 0.00 0.00 0.00 3.67
85 86 6.691754 TTTTAGTTTGAGCATGAAGTCACA 57.308 33.333 0.00 0.00 0.00 3.58
86 87 5.673337 TTAGTTTGAGCATGAAGTCACAC 57.327 39.130 0.00 0.00 0.00 3.82
87 88 3.544684 AGTTTGAGCATGAAGTCACACA 58.455 40.909 0.00 0.00 0.00 3.72
88 89 4.139786 AGTTTGAGCATGAAGTCACACAT 58.860 39.130 0.00 0.00 0.00 3.21
89 90 4.581824 AGTTTGAGCATGAAGTCACACATT 59.418 37.500 0.00 0.00 0.00 2.71
90 91 5.068198 AGTTTGAGCATGAAGTCACACATTT 59.932 36.000 0.00 0.00 0.00 2.32
91 92 4.754372 TGAGCATGAAGTCACACATTTC 57.246 40.909 0.00 0.00 0.00 2.17
92 93 4.136051 TGAGCATGAAGTCACACATTTCA 58.864 39.130 0.00 0.00 35.52 2.69
93 94 4.023792 TGAGCATGAAGTCACACATTTCAC 60.024 41.667 0.00 0.00 34.04 3.18
94 95 4.139786 AGCATGAAGTCACACATTTCACT 58.860 39.130 0.00 0.00 34.04 3.41
95 96 4.023450 AGCATGAAGTCACACATTTCACTG 60.023 41.667 0.00 0.00 34.04 3.66
96 97 4.261322 GCATGAAGTCACACATTTCACTGT 60.261 41.667 0.00 0.00 34.04 3.55
97 98 5.734220 GCATGAAGTCACACATTTCACTGTT 60.734 40.000 0.00 0.00 34.04 3.16
98 99 5.895636 TGAAGTCACACATTTCACTGTTT 57.104 34.783 0.00 0.00 0.00 2.83
99 100 5.639757 TGAAGTCACACATTTCACTGTTTG 58.360 37.500 0.00 0.00 0.00 2.93
100 101 5.414144 TGAAGTCACACATTTCACTGTTTGA 59.586 36.000 0.00 0.00 34.39 2.69
101 102 5.490139 AGTCACACATTTCACTGTTTGAG 57.510 39.130 0.00 0.00 36.72 3.02
102 103 4.943705 AGTCACACATTTCACTGTTTGAGT 59.056 37.500 0.00 0.00 36.72 3.41
103 104 5.415701 AGTCACACATTTCACTGTTTGAGTT 59.584 36.000 0.00 0.00 36.54 3.01
104 105 6.071952 AGTCACACATTTCACTGTTTGAGTTT 60.072 34.615 0.00 0.00 36.54 2.66
105 106 6.033831 GTCACACATTTCACTGTTTGAGTTTG 59.966 38.462 0.00 0.00 36.72 2.93
106 107 6.072230 TCACACATTTCACTGTTTGAGTTTGA 60.072 34.615 0.00 0.00 32.43 2.69
107 108 6.585702 CACACATTTCACTGTTTGAGTTTGAA 59.414 34.615 0.00 0.00 34.94 2.69
108 109 7.116090 CACACATTTCACTGTTTGAGTTTGAAA 59.884 33.333 0.00 0.00 34.94 2.69
109 110 7.116233 ACACATTTCACTGTTTGAGTTTGAAAC 59.884 33.333 0.00 0.00 32.33 2.78
110 111 7.329226 CACATTTCACTGTTTGAGTTTGAAACT 59.671 33.333 10.82 10.82 46.38 2.66
111 112 8.519526 ACATTTCACTGTTTGAGTTTGAAACTA 58.480 29.630 11.01 0.00 43.03 2.24
112 113 9.520204 CATTTCACTGTTTGAGTTTGAAACTAT 57.480 29.630 11.01 0.00 43.03 2.12
114 115 8.909708 TTCACTGTTTGAGTTTGAAACTATTG 57.090 30.769 11.01 0.13 43.03 1.90
115 116 8.050778 TCACTGTTTGAGTTTGAAACTATTGT 57.949 30.769 11.01 2.32 43.03 2.71
116 117 8.519526 TCACTGTTTGAGTTTGAAACTATTGTT 58.480 29.630 11.01 0.00 43.03 2.83
117 118 8.798153 CACTGTTTGAGTTTGAAACTATTGTTC 58.202 33.333 11.01 0.00 43.03 3.18
118 119 8.739972 ACTGTTTGAGTTTGAAACTATTGTTCT 58.260 29.630 11.01 0.00 43.03 3.01
183 184 8.788325 ATAAGTAGTTTGACCATAGTTTGACC 57.212 34.615 0.00 0.00 0.00 4.02
184 185 6.182507 AGTAGTTTGACCATAGTTTGACCA 57.817 37.500 0.00 0.00 0.00 4.02
185 186 5.995897 AGTAGTTTGACCATAGTTTGACCAC 59.004 40.000 0.00 0.00 0.00 4.16
186 187 4.787551 AGTTTGACCATAGTTTGACCACA 58.212 39.130 0.00 0.00 0.00 4.17
187 188 4.821805 AGTTTGACCATAGTTTGACCACAG 59.178 41.667 0.00 0.00 0.00 3.66
188 189 4.431416 TTGACCATAGTTTGACCACAGT 57.569 40.909 0.00 0.00 0.00 3.55
189 190 4.431416 TGACCATAGTTTGACCACAGTT 57.569 40.909 0.00 0.00 0.00 3.16
190 191 4.787551 TGACCATAGTTTGACCACAGTTT 58.212 39.130 0.00 0.00 0.00 2.66
191 192 4.578516 TGACCATAGTTTGACCACAGTTTG 59.421 41.667 0.00 0.00 0.00 2.93
192 193 4.787551 ACCATAGTTTGACCACAGTTTGA 58.212 39.130 0.00 0.00 0.00 2.69
193 194 4.578928 ACCATAGTTTGACCACAGTTTGAC 59.421 41.667 0.00 0.00 0.00 3.18
194 195 4.023193 CCATAGTTTGACCACAGTTTGACC 60.023 45.833 0.00 0.00 0.00 4.02
195 196 3.080300 AGTTTGACCACAGTTTGACCA 57.920 42.857 0.00 0.00 0.00 4.02
196 197 3.016736 AGTTTGACCACAGTTTGACCAG 58.983 45.455 0.00 0.00 0.00 4.00
197 198 3.013921 GTTTGACCACAGTTTGACCAGA 58.986 45.455 0.00 0.00 0.00 3.86
198 199 3.576078 TTGACCACAGTTTGACCAGAT 57.424 42.857 0.00 0.00 0.00 2.90
199 200 3.576078 TGACCACAGTTTGACCAGATT 57.424 42.857 0.00 0.00 0.00 2.40
200 201 3.897239 TGACCACAGTTTGACCAGATTT 58.103 40.909 0.00 0.00 0.00 2.17
201 202 3.631686 TGACCACAGTTTGACCAGATTTG 59.368 43.478 0.00 0.00 0.00 2.32
202 203 3.882888 GACCACAGTTTGACCAGATTTGA 59.117 43.478 0.00 0.00 0.00 2.69
203 204 3.632145 ACCACAGTTTGACCAGATTTGAC 59.368 43.478 0.00 0.00 0.00 3.18
204 205 3.004734 CCACAGTTTGACCAGATTTGACC 59.995 47.826 0.00 0.00 0.00 4.02
205 206 3.631686 CACAGTTTGACCAGATTTGACCA 59.368 43.478 0.00 0.00 0.00 4.02
206 207 4.097741 CACAGTTTGACCAGATTTGACCAA 59.902 41.667 0.00 0.00 0.00 3.67
207 208 4.709397 ACAGTTTGACCAGATTTGACCAAA 59.291 37.500 0.00 0.00 34.46 3.28
208 209 5.186797 ACAGTTTGACCAGATTTGACCAAAA 59.813 36.000 0.00 0.00 33.56 2.44
209 210 6.127083 ACAGTTTGACCAGATTTGACCAAAAT 60.127 34.615 0.00 0.00 41.33 1.82
210 211 6.762661 CAGTTTGACCAGATTTGACCAAAATT 59.237 34.615 0.00 0.00 38.64 1.82
211 212 6.986231 AGTTTGACCAGATTTGACCAAAATTC 59.014 34.615 0.00 0.00 38.64 2.17
212 213 6.477053 TTGACCAGATTTGACCAAAATTCA 57.523 33.333 0.00 0.00 38.64 2.57
213 214 6.477053 TGACCAGATTTGACCAAAATTCAA 57.523 33.333 0.00 0.00 38.64 2.69
214 215 6.882656 TGACCAGATTTGACCAAAATTCAAA 58.117 32.000 0.00 0.31 44.84 2.69
215 216 7.334090 TGACCAGATTTGACCAAAATTCAAAA 58.666 30.769 1.90 0.00 44.14 2.44
216 217 7.826252 TGACCAGATTTGACCAAAATTCAAAAA 59.174 29.630 1.90 0.00 44.14 1.94
301 302 8.974060 ACTTCTTGAATAAGTAGTTTGACCAA 57.026 30.769 0.00 0.00 40.34 3.67
302 303 8.837389 ACTTCTTGAATAAGTAGTTTGACCAAC 58.163 33.333 0.00 0.00 40.34 3.77
303 304 8.740123 TTCTTGAATAAGTAGTTTGACCAACA 57.260 30.769 0.00 0.00 35.18 3.33
304 305 8.918202 TCTTGAATAAGTAGTTTGACCAACAT 57.082 30.769 0.00 0.00 35.18 2.71
305 306 9.349713 TCTTGAATAAGTAGTTTGACCAACATT 57.650 29.630 0.00 0.00 35.18 2.71
306 307 9.965824 CTTGAATAAGTAGTTTGACCAACATTT 57.034 29.630 0.00 0.00 37.93 2.32
307 308 9.743057 TTGAATAAGTAGTTTGACCAACATTTG 57.257 29.630 0.00 0.00 37.93 2.32
308 309 9.126151 TGAATAAGTAGTTTGACCAACATTTGA 57.874 29.630 0.00 0.00 37.93 2.69
309 310 9.612620 GAATAAGTAGTTTGACCAACATTTGAG 57.387 33.333 0.00 0.00 37.93 3.02
310 311 8.691661 ATAAGTAGTTTGACCAACATTTGAGT 57.308 30.769 0.00 0.00 37.93 3.41
311 312 6.377327 AGTAGTTTGACCAACATTTGAGTG 57.623 37.500 0.00 0.00 37.93 3.51
312 313 4.654091 AGTTTGACCAACATTTGAGTGG 57.346 40.909 4.27 4.27 37.93 4.00
313 314 4.277476 AGTTTGACCAACATTTGAGTGGA 58.723 39.130 10.60 0.00 37.93 4.02
314 315 4.895297 AGTTTGACCAACATTTGAGTGGAT 59.105 37.500 10.60 0.00 37.93 3.41
315 316 4.852134 TTGACCAACATTTGAGTGGATG 57.148 40.909 10.60 0.00 0.00 3.51
316 317 4.097551 TGACCAACATTTGAGTGGATGA 57.902 40.909 10.60 0.00 0.00 2.92
317 318 4.665451 TGACCAACATTTGAGTGGATGAT 58.335 39.130 10.60 0.00 0.00 2.45
318 319 5.078949 TGACCAACATTTGAGTGGATGATT 58.921 37.500 10.60 0.00 0.00 2.57
319 320 6.244654 TGACCAACATTTGAGTGGATGATTA 58.755 36.000 10.60 0.00 0.00 1.75
320 321 6.718912 TGACCAACATTTGAGTGGATGATTAA 59.281 34.615 10.60 0.00 0.00 1.40
321 322 7.232330 TGACCAACATTTGAGTGGATGATTAAA 59.768 33.333 10.60 0.00 0.00 1.52
322 323 8.137745 ACCAACATTTGAGTGGATGATTAAAT 57.862 30.769 10.60 0.00 0.00 1.40
323 324 8.036575 ACCAACATTTGAGTGGATGATTAAATG 58.963 33.333 10.60 0.00 39.87 2.32
324 325 7.010738 CCAACATTTGAGTGGATGATTAAATGC 59.989 37.037 0.00 0.00 38.44 3.56
325 326 7.172868 ACATTTGAGTGGATGATTAAATGCA 57.827 32.000 0.00 0.00 38.44 3.96
326 327 7.788026 ACATTTGAGTGGATGATTAAATGCAT 58.212 30.769 0.00 0.00 38.44 3.96
327 328 7.709182 ACATTTGAGTGGATGATTAAATGCATG 59.291 33.333 0.00 0.00 38.44 4.06
328 329 6.778834 TTGAGTGGATGATTAAATGCATGT 57.221 33.333 0.00 0.00 30.09 3.21
329 330 6.778834 TGAGTGGATGATTAAATGCATGTT 57.221 33.333 0.00 0.00 30.09 2.71
330 331 7.172868 TGAGTGGATGATTAAATGCATGTTT 57.827 32.000 0.00 0.00 30.09 2.83
331 332 7.613585 TGAGTGGATGATTAAATGCATGTTTT 58.386 30.769 0.00 0.00 30.09 2.43
332 333 7.546316 TGAGTGGATGATTAAATGCATGTTTTG 59.454 33.333 0.00 0.00 30.09 2.44
333 334 7.613585 AGTGGATGATTAAATGCATGTTTTGA 58.386 30.769 0.00 0.00 30.09 2.69
334 335 7.546667 AGTGGATGATTAAATGCATGTTTTGAC 59.453 33.333 0.00 0.00 30.09 3.18
335 336 7.546667 GTGGATGATTAAATGCATGTTTTGACT 59.453 33.333 0.00 0.00 30.09 3.41
336 337 8.095792 TGGATGATTAAATGCATGTTTTGACTT 58.904 29.630 0.00 0.00 0.00 3.01
337 338 9.585099 GGATGATTAAATGCATGTTTTGACTTA 57.415 29.630 0.00 0.00 0.00 2.24
340 341 9.755804 TGATTAAATGCATGTTTTGACTTAACA 57.244 25.926 0.00 0.00 39.58 2.41
342 343 6.843069 AAATGCATGTTTTGACTTAACACC 57.157 33.333 0.00 0.00 38.23 4.16
343 344 4.991153 TGCATGTTTTGACTTAACACCA 57.009 36.364 0.00 0.00 38.23 4.17
344 345 5.330455 TGCATGTTTTGACTTAACACCAA 57.670 34.783 0.00 0.00 38.23 3.67
345 346 5.911752 TGCATGTTTTGACTTAACACCAAT 58.088 33.333 0.00 0.00 38.23 3.16
346 347 6.344500 TGCATGTTTTGACTTAACACCAATT 58.656 32.000 0.00 0.00 38.23 2.32
347 348 6.257411 TGCATGTTTTGACTTAACACCAATTG 59.743 34.615 0.00 0.00 38.23 2.32
348 349 6.257630 GCATGTTTTGACTTAACACCAATTGT 59.742 34.615 4.43 0.00 41.74 2.71
360 361 5.738118 ACACCAATTGTTGCATTTTTCTG 57.262 34.783 2.45 0.00 33.09 3.02
361 362 5.426504 ACACCAATTGTTGCATTTTTCTGA 58.573 33.333 2.45 0.00 33.09 3.27
362 363 5.879223 ACACCAATTGTTGCATTTTTCTGAA 59.121 32.000 2.45 0.00 33.09 3.02
363 364 6.543100 ACACCAATTGTTGCATTTTTCTGAAT 59.457 30.769 2.45 0.00 33.09 2.57
364 365 7.067251 ACACCAATTGTTGCATTTTTCTGAATT 59.933 29.630 2.45 0.00 33.09 2.17
365 366 7.916450 CACCAATTGTTGCATTTTTCTGAATTT 59.084 29.630 4.43 0.00 0.00 1.82
366 367 9.118300 ACCAATTGTTGCATTTTTCTGAATTTA 57.882 25.926 4.43 0.00 0.00 1.40
383 384 8.653338 TCTGAATTTATTTTAGGTCTTTCGACG 58.347 33.333 0.00 0.00 41.16 5.12
384 385 8.537049 TGAATTTATTTTAGGTCTTTCGACGA 57.463 30.769 0.00 0.00 41.16 4.20
385 386 9.158233 TGAATTTATTTTAGGTCTTTCGACGAT 57.842 29.630 0.00 0.00 41.16 3.73
389 390 9.806203 TTTATTTTAGGTCTTTCGACGATATGA 57.194 29.630 0.00 0.00 41.16 2.15
390 391 7.932120 ATTTTAGGTCTTTCGACGATATGAG 57.068 36.000 0.00 0.00 41.16 2.90
391 392 3.992260 AGGTCTTTCGACGATATGAGG 57.008 47.619 0.00 0.00 41.16 3.86
392 393 3.552875 AGGTCTTTCGACGATATGAGGA 58.447 45.455 0.00 0.00 41.16 3.71
393 394 3.566322 AGGTCTTTCGACGATATGAGGAG 59.434 47.826 0.00 0.00 41.16 3.69
394 395 3.564644 GGTCTTTCGACGATATGAGGAGA 59.435 47.826 0.00 0.00 41.16 3.71
395 396 4.529446 GTCTTTCGACGATATGAGGAGAC 58.471 47.826 0.00 1.17 0.00 3.36
396 397 4.035324 GTCTTTCGACGATATGAGGAGACA 59.965 45.833 0.00 0.00 33.22 3.41
397 398 4.822350 TCTTTCGACGATATGAGGAGACAT 59.178 41.667 0.00 0.00 0.00 3.06
398 399 5.299531 TCTTTCGACGATATGAGGAGACATT 59.700 40.000 0.00 0.00 0.00 2.71
399 400 4.750952 TCGACGATATGAGGAGACATTC 57.249 45.455 0.00 0.00 0.00 2.67
409 410 2.231215 GGAGACATTCCCATCGACTG 57.769 55.000 0.00 0.00 40.37 3.51
410 411 1.576356 GAGACATTCCCATCGACTGC 58.424 55.000 0.00 0.00 0.00 4.40
411 412 0.179100 AGACATTCCCATCGACTGCG 60.179 55.000 0.00 0.00 39.35 5.18
420 421 3.759544 TCGACTGCGAAGGTGTCT 58.240 55.556 0.00 0.00 44.78 3.41
421 422 1.285950 TCGACTGCGAAGGTGTCTG 59.714 57.895 0.00 0.00 44.78 3.51
422 423 1.007271 CGACTGCGAAGGTGTCTGT 60.007 57.895 0.00 0.00 40.82 3.41
423 424 1.278172 CGACTGCGAAGGTGTCTGTG 61.278 60.000 0.00 0.00 40.82 3.66
424 425 0.032130 GACTGCGAAGGTGTCTGTGA 59.968 55.000 0.00 0.00 0.00 3.58
425 426 0.249489 ACTGCGAAGGTGTCTGTGAC 60.249 55.000 0.00 0.00 0.00 3.67
426 427 1.278172 CTGCGAAGGTGTCTGTGACG 61.278 60.000 0.00 0.00 34.95 4.35
427 428 1.007734 GCGAAGGTGTCTGTGACGA 60.008 57.895 0.00 0.00 34.95 4.20
428 429 1.276145 GCGAAGGTGTCTGTGACGAC 61.276 60.000 0.00 1.61 34.95 4.34
429 430 0.311165 CGAAGGTGTCTGTGACGACT 59.689 55.000 8.51 0.00 34.95 4.18
430 431 1.269102 CGAAGGTGTCTGTGACGACTT 60.269 52.381 8.51 6.46 35.16 3.01
431 432 2.395654 GAAGGTGTCTGTGACGACTTC 58.604 52.381 13.91 13.91 39.09 3.01
432 433 0.311165 AGGTGTCTGTGACGACTTCG 59.689 55.000 8.51 0.00 46.33 3.79
444 445 2.838386 CGACTTCGTAAATCCGAGGA 57.162 50.000 0.00 0.00 38.23 3.71
445 446 3.351020 CGACTTCGTAAATCCGAGGAT 57.649 47.619 0.00 0.00 38.23 3.24
446 447 3.043586 CGACTTCGTAAATCCGAGGATG 58.956 50.000 5.25 0.00 38.23 3.51
447 448 3.242969 CGACTTCGTAAATCCGAGGATGA 60.243 47.826 5.25 0.00 38.23 2.92
448 449 4.556898 CGACTTCGTAAATCCGAGGATGAT 60.557 45.833 5.25 1.02 38.23 2.45
449 450 4.621991 ACTTCGTAAATCCGAGGATGATG 58.378 43.478 5.25 3.22 38.23 3.07
450 451 4.099573 ACTTCGTAAATCCGAGGATGATGT 59.900 41.667 5.25 4.55 38.23 3.06
451 452 3.977427 TCGTAAATCCGAGGATGATGTG 58.023 45.455 5.25 0.00 34.70 3.21
452 453 3.383505 TCGTAAATCCGAGGATGATGTGT 59.616 43.478 5.25 0.00 34.70 3.72
453 454 4.581409 TCGTAAATCCGAGGATGATGTGTA 59.419 41.667 5.25 0.00 34.70 2.90
454 455 4.917998 CGTAAATCCGAGGATGATGTGTAG 59.082 45.833 5.25 0.00 34.70 2.74
455 456 5.278315 CGTAAATCCGAGGATGATGTGTAGA 60.278 44.000 5.25 0.00 34.70 2.59
456 457 4.592485 AATCCGAGGATGATGTGTAGAC 57.408 45.455 5.25 0.00 34.70 2.59
457 458 3.298686 TCCGAGGATGATGTGTAGACT 57.701 47.619 0.00 0.00 0.00 3.24
458 459 3.215151 TCCGAGGATGATGTGTAGACTC 58.785 50.000 0.00 0.00 0.00 3.36
459 460 2.952310 CCGAGGATGATGTGTAGACTCA 59.048 50.000 0.00 0.00 0.00 3.41
460 461 3.004210 CCGAGGATGATGTGTAGACTCAG 59.996 52.174 0.00 0.00 0.00 3.35
461 462 3.629855 CGAGGATGATGTGTAGACTCAGT 59.370 47.826 0.00 0.00 0.00 3.41
462 463 4.260990 CGAGGATGATGTGTAGACTCAGTC 60.261 50.000 0.00 0.00 0.00 3.51
463 464 4.865905 AGGATGATGTGTAGACTCAGTCT 58.134 43.478 13.16 13.16 45.54 3.24
464 465 4.887071 AGGATGATGTGTAGACTCAGTCTC 59.113 45.833 11.71 3.96 42.40 3.36
465 466 4.887071 GGATGATGTGTAGACTCAGTCTCT 59.113 45.833 11.71 0.00 42.40 3.10
466 467 5.008613 GGATGATGTGTAGACTCAGTCTCTC 59.991 48.000 11.71 6.79 42.40 3.20
467 468 4.911390 TGATGTGTAGACTCAGTCTCTCA 58.089 43.478 11.71 9.49 42.40 3.27
468 469 5.316987 TGATGTGTAGACTCAGTCTCTCAA 58.683 41.667 11.71 4.40 42.40 3.02
469 470 5.770162 TGATGTGTAGACTCAGTCTCTCAAA 59.230 40.000 11.71 7.88 42.40 2.69
470 471 6.265422 TGATGTGTAGACTCAGTCTCTCAAAA 59.735 38.462 11.71 5.05 42.40 2.44
471 472 6.465439 TGTGTAGACTCAGTCTCTCAAAAA 57.535 37.500 11.71 0.00 42.40 1.94
472 473 7.055667 TGTGTAGACTCAGTCTCTCAAAAAT 57.944 36.000 11.71 0.00 42.40 1.82
473 474 8.178313 TGTGTAGACTCAGTCTCTCAAAAATA 57.822 34.615 11.71 0.00 42.40 1.40
474 475 8.082852 TGTGTAGACTCAGTCTCTCAAAAATAC 58.917 37.037 11.71 0.80 42.40 1.89
475 476 8.301002 GTGTAGACTCAGTCTCTCAAAAATACT 58.699 37.037 11.71 0.00 42.40 2.12
476 477 8.861086 TGTAGACTCAGTCTCTCAAAAATACTT 58.139 33.333 11.71 0.00 42.40 2.24
497 498 7.807977 ACTTATAAGGTAGGATTTGCATGTG 57.192 36.000 16.73 0.00 0.00 3.21
498 499 7.346471 ACTTATAAGGTAGGATTTGCATGTGT 58.654 34.615 16.73 0.00 0.00 3.72
499 500 7.283127 ACTTATAAGGTAGGATTTGCATGTGTG 59.717 37.037 16.73 0.00 0.00 3.82
510 511 2.726555 GCATGTGTGCGTTCATAGAG 57.273 50.000 0.00 0.00 42.28 2.43
511 512 2.270923 GCATGTGTGCGTTCATAGAGA 58.729 47.619 0.00 0.00 42.28 3.10
512 513 2.868583 GCATGTGTGCGTTCATAGAGAT 59.131 45.455 0.00 0.00 42.28 2.75
513 514 3.302935 GCATGTGTGCGTTCATAGAGATG 60.303 47.826 0.00 0.00 42.28 2.90
514 515 3.866883 TGTGTGCGTTCATAGAGATGA 57.133 42.857 0.00 0.00 40.45 2.92
515 516 3.774066 TGTGTGCGTTCATAGAGATGAG 58.226 45.455 0.00 0.00 43.03 2.90
516 517 3.193479 TGTGTGCGTTCATAGAGATGAGT 59.807 43.478 0.00 0.00 43.03 3.41
517 518 3.549471 GTGTGCGTTCATAGAGATGAGTG 59.451 47.826 0.00 0.00 43.03 3.51
518 519 3.193479 TGTGCGTTCATAGAGATGAGTGT 59.807 43.478 0.00 0.00 43.03 3.55
519 520 4.398044 TGTGCGTTCATAGAGATGAGTGTA 59.602 41.667 0.00 0.00 43.03 2.90
520 521 5.067805 TGTGCGTTCATAGAGATGAGTGTAT 59.932 40.000 0.00 0.00 43.03 2.29
521 522 5.980116 GTGCGTTCATAGAGATGAGTGTATT 59.020 40.000 0.00 0.00 43.03 1.89
522 523 5.979517 TGCGTTCATAGAGATGAGTGTATTG 59.020 40.000 0.00 0.00 43.03 1.90
523 524 5.107683 GCGTTCATAGAGATGAGTGTATTGC 60.108 44.000 0.00 0.00 43.03 3.56
524 525 5.979517 CGTTCATAGAGATGAGTGTATTGCA 59.020 40.000 0.00 0.00 43.03 4.08
525 526 6.644181 CGTTCATAGAGATGAGTGTATTGCAT 59.356 38.462 0.00 0.00 43.03 3.96
526 527 7.809806 CGTTCATAGAGATGAGTGTATTGCATA 59.190 37.037 0.00 0.00 43.03 3.14
527 528 9.650539 GTTCATAGAGATGAGTGTATTGCATAT 57.349 33.333 0.00 0.00 43.03 1.78
528 529 9.649167 TTCATAGAGATGAGTGTATTGCATATG 57.351 33.333 0.00 0.00 43.03 1.78
529 530 8.810041 TCATAGAGATGAGTGTATTGCATATGT 58.190 33.333 4.29 0.00 37.15 2.29
530 531 9.433153 CATAGAGATGAGTGTATTGCATATGTT 57.567 33.333 4.29 0.00 34.73 2.71
532 533 8.151141 AGAGATGAGTGTATTGCATATGTTTG 57.849 34.615 4.29 0.00 0.00 2.93
533 534 7.228108 AGAGATGAGTGTATTGCATATGTTTGG 59.772 37.037 4.29 0.00 0.00 3.28
534 535 5.833406 TGAGTGTATTGCATATGTTTGGG 57.167 39.130 4.29 0.00 0.00 4.12
535 536 5.260424 TGAGTGTATTGCATATGTTTGGGT 58.740 37.500 4.29 0.00 0.00 4.51
536 537 5.125257 TGAGTGTATTGCATATGTTTGGGTG 59.875 40.000 4.29 0.00 0.00 4.61
537 538 4.111916 GTGTATTGCATATGTTTGGGTGC 58.888 43.478 4.29 0.00 38.05 5.01
538 539 2.582728 ATTGCATATGTTTGGGTGCG 57.417 45.000 4.29 0.00 40.34 5.34
539 540 1.252175 TTGCATATGTTTGGGTGCGT 58.748 45.000 4.29 0.00 40.34 5.24
540 541 0.525311 TGCATATGTTTGGGTGCGTG 59.475 50.000 4.29 0.00 40.34 5.34
541 542 0.801836 GCATATGTTTGGGTGCGTGC 60.802 55.000 4.29 0.00 0.00 5.34
542 543 0.523125 CATATGTTTGGGTGCGTGCG 60.523 55.000 0.00 0.00 0.00 5.34
543 544 0.958382 ATATGTTTGGGTGCGTGCGT 60.958 50.000 0.00 0.00 0.00 5.24
544 545 1.570347 TATGTTTGGGTGCGTGCGTC 61.570 55.000 0.00 0.00 0.00 5.19
545 546 3.276846 GTTTGGGTGCGTGCGTCT 61.277 61.111 0.00 0.00 0.00 4.18
546 547 3.276091 TTTGGGTGCGTGCGTCTG 61.276 61.111 0.00 0.00 0.00 3.51
547 548 4.539083 TTGGGTGCGTGCGTCTGT 62.539 61.111 0.00 0.00 0.00 3.41
548 549 2.646117 TTTGGGTGCGTGCGTCTGTA 62.646 55.000 0.00 0.00 0.00 2.74
549 550 3.110178 GGGTGCGTGCGTCTGTAC 61.110 66.667 0.00 0.00 0.00 2.90
550 551 2.049433 GGTGCGTGCGTCTGTACT 60.049 61.111 0.00 0.00 0.00 2.73
551 552 2.372690 GGTGCGTGCGTCTGTACTG 61.373 63.158 0.00 0.00 0.00 2.74
552 553 1.371267 GTGCGTGCGTCTGTACTGA 60.371 57.895 0.00 0.00 0.00 3.41
553 554 1.371267 TGCGTGCGTCTGTACTGAC 60.371 57.895 19.80 19.80 0.00 3.51
554 555 2.087009 GCGTGCGTCTGTACTGACC 61.087 63.158 22.63 16.72 33.70 4.02
555 556 1.579932 CGTGCGTCTGTACTGACCT 59.420 57.895 22.63 0.00 33.70 3.85
556 557 0.800631 CGTGCGTCTGTACTGACCTA 59.199 55.000 22.63 11.89 33.70 3.08
557 558 1.198408 CGTGCGTCTGTACTGACCTAA 59.802 52.381 22.63 9.25 33.70 2.69
558 559 2.351060 CGTGCGTCTGTACTGACCTAAA 60.351 50.000 22.63 7.17 33.70 1.85
559 560 2.985139 GTGCGTCTGTACTGACCTAAAC 59.015 50.000 22.63 13.71 33.70 2.01
560 561 2.248487 GCGTCTGTACTGACCTAAACG 58.752 52.381 22.63 13.90 33.70 3.60
561 562 2.095567 GCGTCTGTACTGACCTAAACGA 60.096 50.000 22.63 0.00 33.70 3.85
562 563 3.744987 CGTCTGTACTGACCTAAACGAG 58.255 50.000 22.63 6.55 33.70 4.18
563 564 3.434641 CGTCTGTACTGACCTAAACGAGA 59.565 47.826 22.63 0.00 33.70 4.04
564 565 4.668686 CGTCTGTACTGACCTAAACGAGAC 60.669 50.000 22.63 8.85 33.70 3.36
565 566 3.434641 TCTGTACTGACCTAAACGAGACG 59.565 47.826 0.00 0.00 0.00 4.18
566 567 2.095567 TGTACTGACCTAAACGAGACGC 60.096 50.000 0.00 0.00 0.00 5.19
567 568 0.956633 ACTGACCTAAACGAGACGCA 59.043 50.000 0.00 0.00 0.00 5.24
568 569 1.335689 ACTGACCTAAACGAGACGCAC 60.336 52.381 0.00 0.00 0.00 5.34
569 570 0.038892 TGACCTAAACGAGACGCACC 60.039 55.000 0.00 0.00 0.00 5.01
570 571 1.069378 GACCTAAACGAGACGCACCG 61.069 60.000 0.00 0.00 0.00 4.94
571 572 1.080974 CCTAAACGAGACGCACCGT 60.081 57.895 0.00 0.00 45.10 4.83
580 581 2.989824 ACGCACCGTCCTGCTAGT 60.990 61.111 0.00 0.00 33.69 2.57
581 582 2.261671 CGCACCGTCCTGCTAGTT 59.738 61.111 0.00 0.00 34.77 2.24
582 583 1.374252 CGCACCGTCCTGCTAGTTT 60.374 57.895 0.00 0.00 34.77 2.66
583 584 0.949105 CGCACCGTCCTGCTAGTTTT 60.949 55.000 0.00 0.00 34.77 2.43
584 585 0.796927 GCACCGTCCTGCTAGTTTTC 59.203 55.000 0.00 0.00 34.06 2.29
585 586 1.608283 GCACCGTCCTGCTAGTTTTCT 60.608 52.381 0.00 0.00 34.06 2.52
586 587 2.353406 GCACCGTCCTGCTAGTTTTCTA 60.353 50.000 0.00 0.00 34.06 2.10
587 588 3.679083 GCACCGTCCTGCTAGTTTTCTAT 60.679 47.826 0.00 0.00 34.06 1.98
588 589 3.865745 CACCGTCCTGCTAGTTTTCTATG 59.134 47.826 0.00 0.00 0.00 2.23
589 590 2.866762 CCGTCCTGCTAGTTTTCTATGC 59.133 50.000 0.00 0.00 0.00 3.14
590 591 2.866762 CGTCCTGCTAGTTTTCTATGCC 59.133 50.000 0.00 0.00 0.00 4.40
591 592 3.678806 CGTCCTGCTAGTTTTCTATGCCA 60.679 47.826 0.00 0.00 0.00 4.92
592 593 3.873952 GTCCTGCTAGTTTTCTATGCCAG 59.126 47.826 0.00 0.00 0.00 4.85
593 594 3.519510 TCCTGCTAGTTTTCTATGCCAGT 59.480 43.478 0.00 0.00 0.00 4.00
594 595 3.873952 CCTGCTAGTTTTCTATGCCAGTC 59.126 47.826 0.00 0.00 0.00 3.51
595 596 3.873910 TGCTAGTTTTCTATGCCAGTCC 58.126 45.455 0.00 0.00 0.00 3.85
596 597 2.866762 GCTAGTTTTCTATGCCAGTCCG 59.133 50.000 0.00 0.00 0.00 4.79
597 598 3.679083 GCTAGTTTTCTATGCCAGTCCGT 60.679 47.826 0.00 0.00 0.00 4.69
598 599 3.418684 AGTTTTCTATGCCAGTCCGTT 57.581 42.857 0.00 0.00 0.00 4.44
599 600 4.546829 AGTTTTCTATGCCAGTCCGTTA 57.453 40.909 0.00 0.00 0.00 3.18
600 601 4.901868 AGTTTTCTATGCCAGTCCGTTAA 58.098 39.130 0.00 0.00 0.00 2.01
601 602 5.310451 AGTTTTCTATGCCAGTCCGTTAAA 58.690 37.500 0.00 0.00 0.00 1.52
602 603 5.180680 AGTTTTCTATGCCAGTCCGTTAAAC 59.819 40.000 0.00 0.00 0.00 2.01
603 604 4.546829 TTCTATGCCAGTCCGTTAAACT 57.453 40.909 0.00 0.00 0.00 2.66
604 605 4.546829 TCTATGCCAGTCCGTTAAACTT 57.453 40.909 0.00 0.00 0.00 2.66
605 606 4.901868 TCTATGCCAGTCCGTTAAACTTT 58.098 39.130 0.00 0.00 0.00 2.66
606 607 5.310451 TCTATGCCAGTCCGTTAAACTTTT 58.690 37.500 0.00 0.00 0.00 2.27
607 608 4.929819 ATGCCAGTCCGTTAAACTTTTT 57.070 36.364 0.00 0.00 0.00 1.94
638 639 9.913310 AAAATTGAGGGGACTTTTCAAAATTTA 57.087 25.926 0.00 0.00 44.43 1.40
640 641 9.725019 AATTGAGGGGACTTTTCAAAATTTATC 57.275 29.630 0.00 0.00 44.43 1.75
642 643 8.434589 TGAGGGGACTTTTCAAAATTTATCAT 57.565 30.769 0.00 0.00 44.43 2.45
643 644 9.540538 TGAGGGGACTTTTCAAAATTTATCATA 57.459 29.630 0.00 0.00 44.43 2.15
778 789 4.745125 ACCACGCAACAATAATATCTCGAG 59.255 41.667 5.93 5.93 0.00 4.04
975 1002 2.373100 GGCTTACCCTCCTCCCCT 59.627 66.667 0.00 0.00 0.00 4.79
1186 1218 1.689813 TCAAAGTCTGCGGTAAGGACA 59.310 47.619 0.00 0.00 32.98 4.02
1205 1237 2.124695 CCGCTTCCTGCCTAACCC 60.125 66.667 0.00 0.00 38.78 4.11
1207 1239 2.824489 GCTTCCTGCCTAACCCGC 60.824 66.667 0.00 0.00 35.15 6.13
1208 1240 2.124695 CTTCCTGCCTAACCCGCC 60.125 66.667 0.00 0.00 0.00 6.13
1248 1280 1.069924 CTCGCTTCTGCTGTCTGTCG 61.070 60.000 0.00 0.00 36.97 4.35
1249 1281 1.081175 CGCTTCTGCTGTCTGTCGA 60.081 57.895 0.00 0.00 36.97 4.20
1250 1282 0.457509 CGCTTCTGCTGTCTGTCGAT 60.458 55.000 0.00 0.00 36.97 3.59
1252 1284 1.638133 CTTCTGCTGTCTGTCGATGG 58.362 55.000 0.00 0.00 0.00 3.51
1253 1285 0.390340 TTCTGCTGTCTGTCGATGGC 60.390 55.000 0.00 0.00 0.00 4.40
1254 1286 1.217511 CTGCTGTCTGTCGATGGCT 59.782 57.895 0.00 0.00 0.00 4.75
1255 1287 0.805322 CTGCTGTCTGTCGATGGCTC 60.805 60.000 0.00 0.00 0.00 4.70
1376 1411 1.271379 TGGCCCTTCTGTGCTAAGTTC 60.271 52.381 0.00 0.00 0.00 3.01
1382 1421 0.670546 TCTGTGCTAAGTTCAGGCGC 60.671 55.000 0.00 0.00 37.05 6.53
1405 1445 1.080772 GTGGTTTAAAGCCGCTGCC 60.081 57.895 14.49 0.00 38.69 4.85
1409 1449 1.270094 GGTTTAAAGCCGCTGCCTTTT 60.270 47.619 6.10 3.33 38.69 2.27
1410 1450 2.029739 GGTTTAAAGCCGCTGCCTTTTA 60.030 45.455 6.10 2.50 38.69 1.52
1411 1451 3.242518 GTTTAAAGCCGCTGCCTTTTAG 58.757 45.455 8.76 0.00 38.69 1.85
1412 1452 2.194201 TAAAGCCGCTGCCTTTTAGT 57.806 45.000 8.76 0.00 38.69 2.24
1456 1496 2.236146 TCCTGCTATCTTCTGGCGAAAA 59.764 45.455 0.00 0.00 33.18 2.29
1466 1506 5.523013 CTTCTGGCGAAAAGAAGTTCTAG 57.477 43.478 5.65 0.00 43.72 2.43
1482 1522 1.272490 TCTAGTGGGTTCGCTGTTCTG 59.728 52.381 0.00 0.00 35.12 3.02
1485 1525 1.227823 TGGGTTCGCTGTTCTGGTG 60.228 57.895 0.00 0.00 0.00 4.17
1567 1607 7.148340 ACGATTCATCTTCCTCTCATGTTTTTC 60.148 37.037 0.00 0.00 0.00 2.29
1568 1608 6.486253 TTCATCTTCCTCTCATGTTTTTCG 57.514 37.500 0.00 0.00 0.00 3.46
1571 1611 0.796312 TCCTCTCATGTTTTTCGCGC 59.204 50.000 0.00 0.00 0.00 6.86
1577 1617 1.059657 CATGTTTTTCGCGCTGACCG 61.060 55.000 5.56 0.00 40.75 4.79
1593 1633 0.462047 ACCGGCTGATGAATTCGTCC 60.462 55.000 22.07 9.09 0.00 4.79
1632 1673 3.505293 GCAGAGCTTCTGGAGTTTGATTT 59.495 43.478 12.98 0.00 44.43 2.17
1633 1674 4.379290 GCAGAGCTTCTGGAGTTTGATTTC 60.379 45.833 12.98 0.00 44.43 2.17
1769 1824 1.464997 GCGCTTAAGGACTGTTTGAGG 59.535 52.381 0.00 0.00 0.00 3.86
1868 1923 3.259876 AGTTGAGCAACGTGTATCCCTTA 59.740 43.478 7.62 0.00 45.50 2.69
1942 1997 5.505173 AATCTTGACAAGTTGACCTGTTG 57.495 39.130 14.75 0.00 0.00 3.33
1988 2044 5.595133 ACGGATTCTGTGTTTTTAAAAGGGA 59.405 36.000 0.14 0.00 0.00 4.20
2075 2131 3.956199 AGAATGCATGTTTCACCCCATAG 59.044 43.478 0.00 0.00 0.00 2.23
2135 2203 3.954200 TCCAGATTATGAAACTGCTGCA 58.046 40.909 0.88 0.88 0.00 4.41
2145 2213 2.129555 AACTGCTGCAGTAGTGGGGG 62.130 60.000 33.89 11.26 44.62 5.40
2222 2290 7.172875 CCAAATTGCAAAATCCAGATTGTGTTA 59.827 33.333 1.71 2.09 38.11 2.41
2249 2317 1.830279 TCAGGAATTTGCAGCTGAGG 58.170 50.000 20.43 0.00 0.00 3.86
2286 2354 5.240623 TGTTAAGTGGGCATAGTTTCTTGTG 59.759 40.000 0.00 0.00 0.00 3.33
2385 2470 4.023536 TGAAAAGACTAATTGCCCACGTTC 60.024 41.667 0.00 0.00 0.00 3.95
2410 2495 4.202245 ACTGTGTTAGTGTGTTGAGTGT 57.798 40.909 0.00 0.00 38.49 3.55
2445 2530 9.818270 TTAGCAGGTATATACTATACCACACTT 57.182 33.333 20.17 7.90 44.92 3.16
2446 2531 8.350852 AGCAGGTATATACTATACCACACTTC 57.649 38.462 20.17 7.03 44.92 3.01
2468 2553 9.784531 ACTTCTTTCTTTTCATGAATAGACTCA 57.215 29.630 23.20 10.36 30.14 3.41
2501 2586 9.047947 ACCTCAGGATTAGTATTGTAAACTCTT 57.952 33.333 0.00 0.00 0.00 2.85
2516 2601 2.318908 ACTCTTTTGCCAAATCTGCCA 58.681 42.857 0.00 0.00 0.00 4.92
3235 3328 5.627499 TTGTTCATCATTTGGTACTGAGC 57.373 39.130 0.00 0.00 0.00 4.26
3265 3358 5.988310 TTCATTTGGCATCTCAATTGACT 57.012 34.783 3.38 0.00 37.00 3.41
3273 3366 7.558161 TGGCATCTCAATTGACTACAAATAG 57.442 36.000 3.38 0.00 39.54 1.73
3318 3411 3.502211 ACTTGCATGCAACAACCTAGTAC 59.498 43.478 28.80 0.00 0.00 2.73
3321 3414 1.396996 CATGCAACAACCTAGTACGCC 59.603 52.381 0.00 0.00 0.00 5.68
3322 3415 0.393448 TGCAACAACCTAGTACGCCA 59.607 50.000 0.00 0.00 0.00 5.69
3544 3684 7.095649 GGAAAATGAAGTGCACTGGTTAATTTC 60.096 37.037 22.49 22.22 0.00 2.17
3622 3762 0.179181 GTTGATGAGGTGCGTGCATG 60.179 55.000 0.09 0.09 0.00 4.06
3623 3763 0.606130 TTGATGAGGTGCGTGCATGT 60.606 50.000 7.93 0.00 0.00 3.21
3624 3764 1.020861 TGATGAGGTGCGTGCATGTC 61.021 55.000 7.93 0.53 0.00 3.06
3625 3765 0.742281 GATGAGGTGCGTGCATGTCT 60.742 55.000 7.93 3.16 0.00 3.41
3626 3766 0.536724 ATGAGGTGCGTGCATGTCTA 59.463 50.000 7.93 0.00 0.00 2.59
3627 3767 0.536724 TGAGGTGCGTGCATGTCTAT 59.463 50.000 7.93 0.00 0.00 1.98
3628 3768 1.754226 TGAGGTGCGTGCATGTCTATA 59.246 47.619 7.93 0.00 0.00 1.31
3629 3769 2.223805 TGAGGTGCGTGCATGTCTATAG 60.224 50.000 7.93 0.00 0.00 1.31
3630 3770 1.069204 AGGTGCGTGCATGTCTATAGG 59.931 52.381 7.93 0.00 0.00 2.57
3631 3771 1.202533 GGTGCGTGCATGTCTATAGGT 60.203 52.381 7.93 0.00 0.00 3.08
3680 4360 5.163581 ACAGCAAGTCATTATCTGCCATTTC 60.164 40.000 0.00 0.00 0.00 2.17
3681 4361 4.951715 AGCAAGTCATTATCTGCCATTTCA 59.048 37.500 0.00 0.00 0.00 2.69
3715 4395 5.046950 GCCATGGGTCATAAACTTGGTTAAA 60.047 40.000 15.13 0.00 0.00 1.52
3716 4396 6.630071 CCATGGGTCATAAACTTGGTTAAAG 58.370 40.000 2.85 0.00 42.07 1.85
3717 4397 6.435904 CCATGGGTCATAAACTTGGTTAAAGA 59.564 38.462 2.85 0.00 39.38 2.52
3718 4398 6.887626 TGGGTCATAAACTTGGTTAAAGAC 57.112 37.500 6.09 6.09 39.38 3.01
3719 4399 6.607019 TGGGTCATAAACTTGGTTAAAGACT 58.393 36.000 11.39 0.00 39.38 3.24
3720 4400 7.064229 TGGGTCATAAACTTGGTTAAAGACTT 58.936 34.615 11.39 0.00 39.38 3.01
3793 4473 7.754924 AGTTCACAATTGCTGATATTTTAACCG 59.245 33.333 5.05 0.00 0.00 4.44
3814 4494 5.815740 ACCGCTTCTACAATAAGTACATTGG 59.184 40.000 9.88 0.00 39.71 3.16
3825 4505 4.650972 AAGTACATTGGGTTAGCTTGGA 57.349 40.909 0.00 0.00 0.00 3.53
4014 4694 2.159382 CCCAACTATTGTGGCGAGTTT 58.841 47.619 0.00 0.00 31.04 2.66
4077 4757 5.374921 ACATGCTCATTCCAGATCCTTAAG 58.625 41.667 0.00 0.00 0.00 1.85
4250 4931 1.580256 GCCGAACAACGTGTTGAAAAC 59.420 47.619 18.87 6.48 41.28 2.43
4409 5091 0.037590 ATGTTTAAGCACGGGAGGCA 59.962 50.000 0.00 0.00 0.00 4.75
4418 5100 2.190578 CGGGAGGCATCAGGAACC 59.809 66.667 0.00 0.00 0.00 3.62
4496 5180 4.554973 CGCTGTTTTATCTGTAAAGCTTGC 59.445 41.667 0.00 0.00 33.64 4.01
4529 5213 5.793817 TGACTTGCTAGCTTTAGTGAATGA 58.206 37.500 17.23 0.00 0.00 2.57
4530 5214 6.230472 TGACTTGCTAGCTTTAGTGAATGAA 58.770 36.000 17.23 0.00 0.00 2.57
4531 5215 6.881065 TGACTTGCTAGCTTTAGTGAATGAAT 59.119 34.615 17.23 0.00 0.00 2.57
4532 5216 7.081526 ACTTGCTAGCTTTAGTGAATGAATG 57.918 36.000 17.23 0.00 0.00 2.67
4544 5228 5.284079 AGTGAATGAATGTGTTTTGCTGAC 58.716 37.500 0.00 0.00 0.00 3.51
4592 5276 7.689953 ATTTAATAGTAGTACCAAGTTCGCG 57.310 36.000 0.00 0.00 0.00 5.87
4717 5402 8.817092 ATTTCGGAGATTCATAAACCCTTTTA 57.183 30.769 0.00 0.00 35.04 1.52
4720 5405 6.069847 TCGGAGATTCATAAACCCTTTTACCT 60.070 38.462 0.00 0.00 29.77 3.08
4730 5415 9.238368 CATAAACCCTTTTACCTAATGAACTCA 57.762 33.333 0.00 0.00 29.77 3.41
4733 5418 6.187682 ACCCTTTTACCTAATGAACTCATGG 58.812 40.000 0.00 0.00 36.56 3.66
4738 5423 7.504926 TTTACCTAATGAACTCATGGTACCT 57.495 36.000 14.36 0.00 35.74 3.08
4806 5491 6.406737 CCATTGAGATTCTAGTCTTCAGCTCA 60.407 42.308 0.00 0.00 0.00 4.26
4814 5499 5.458595 TCTAGTCTTCAGCTCATCCCATTA 58.541 41.667 0.00 0.00 0.00 1.90
4816 5501 5.643421 AGTCTTCAGCTCATCCCATTAAT 57.357 39.130 0.00 0.00 0.00 1.40
4820 5505 5.824624 TCTTCAGCTCATCCCATTAATTCAC 59.175 40.000 0.00 0.00 0.00 3.18
4822 5507 5.371526 TCAGCTCATCCCATTAATTCACTC 58.628 41.667 0.00 0.00 0.00 3.51
4864 5549 3.492482 GCTGCAACCACTAATTGTTTGGT 60.492 43.478 0.00 2.44 45.95 3.67
4873 5558 7.543756 ACCACTAATTGTTTGGTTATATGTGC 58.456 34.615 2.44 0.00 40.98 4.57
4917 5602 2.158856 TGATCCGAGCTCAAATGCATCT 60.159 45.455 15.40 0.00 34.99 2.90
4922 5607 2.477357 CGAGCTCAAATGCATCTTGTGG 60.477 50.000 15.40 6.38 34.99 4.17
5007 5692 8.574251 ACATAGACAAATGTTTTGTATGCCTA 57.426 30.769 9.76 6.25 36.71 3.93
5045 5730 6.923012 TGAAATGACATTCGTGGAAATCATT 58.077 32.000 0.05 12.05 40.18 2.57
5053 5738 5.903764 TTCGTGGAAATCATTGCAAAAAG 57.096 34.783 1.71 0.00 38.70 2.27
5061 5746 8.684520 TGGAAATCATTGCAAAAAGACAAAATT 58.315 25.926 1.71 0.00 33.58 1.82
5067 5752 9.255304 TCATTGCAAAAAGACAAAATTAGTACC 57.745 29.630 1.71 0.00 0.00 3.34
5068 5753 9.260002 CATTGCAAAAAGACAAAATTAGTACCT 57.740 29.630 1.71 0.00 0.00 3.08
5069 5754 8.865590 TTGCAAAAAGACAAAATTAGTACCTC 57.134 30.769 0.00 0.00 0.00 3.85
5112 5800 3.116300 CTCCGTTCCGTAATGTCAGATG 58.884 50.000 0.00 0.00 0.00 2.90
5161 5854 5.556006 TCTTTTACATTATAGGACGGGGG 57.444 43.478 0.00 0.00 0.00 5.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.309528 AACAACGAGTGCAGACTTGA 57.690 45.000 0.00 0.00 37.09 3.02
1 2 3.354397 GAAAACAACGAGTGCAGACTTG 58.646 45.455 0.00 0.00 39.31 3.16
2 3 2.354821 GGAAAACAACGAGTGCAGACTT 59.645 45.455 0.00 0.00 30.16 3.01
3 4 1.940613 GGAAAACAACGAGTGCAGACT 59.059 47.619 0.00 0.00 33.98 3.24
4 5 1.940613 AGGAAAACAACGAGTGCAGAC 59.059 47.619 0.00 0.00 0.00 3.51
5 6 1.939934 CAGGAAAACAACGAGTGCAGA 59.060 47.619 0.00 0.00 0.00 4.26
6 7 1.939934 TCAGGAAAACAACGAGTGCAG 59.060 47.619 0.00 0.00 0.00 4.41
7 8 1.668751 GTCAGGAAAACAACGAGTGCA 59.331 47.619 0.00 0.00 0.00 4.57
8 9 1.668751 TGTCAGGAAAACAACGAGTGC 59.331 47.619 0.00 0.00 0.00 4.40
9 10 4.552166 ATTGTCAGGAAAACAACGAGTG 57.448 40.909 0.00 0.00 39.29 3.51
10 11 5.365619 ACTATTGTCAGGAAAACAACGAGT 58.634 37.500 0.00 0.00 39.29 4.18
11 12 5.924475 ACTATTGTCAGGAAAACAACGAG 57.076 39.130 0.00 0.00 39.29 4.18
12 13 7.211573 TCTTACTATTGTCAGGAAAACAACGA 58.788 34.615 0.00 0.00 39.29 3.85
13 14 7.416154 TCTTACTATTGTCAGGAAAACAACG 57.584 36.000 0.00 0.00 39.29 4.10
14 15 8.784043 ACATCTTACTATTGTCAGGAAAACAAC 58.216 33.333 0.00 0.00 39.29 3.32
15 16 8.918202 ACATCTTACTATTGTCAGGAAAACAA 57.082 30.769 0.00 0.00 40.63 2.83
16 17 8.918202 AACATCTTACTATTGTCAGGAAAACA 57.082 30.769 0.00 0.00 0.00 2.83
20 21 9.832445 GGATTAACATCTTACTATTGTCAGGAA 57.168 33.333 0.00 0.00 0.00 3.36
21 22 9.213777 AGGATTAACATCTTACTATTGTCAGGA 57.786 33.333 0.00 0.00 0.00 3.86
34 35 8.440771 CCTGAGGGTTAATAGGATTAACATCTT 58.559 37.037 18.81 4.42 36.79 2.40
35 36 7.794683 TCCTGAGGGTTAATAGGATTAACATCT 59.205 37.037 18.81 15.55 36.79 2.90
36 37 7.974504 TCCTGAGGGTTAATAGGATTAACATC 58.025 38.462 18.81 16.14 36.79 3.06
37 38 7.947782 TCCTGAGGGTTAATAGGATTAACAT 57.052 36.000 18.81 10.07 36.79 2.71
38 39 7.947782 ATCCTGAGGGTTAATAGGATTAACA 57.052 36.000 18.81 3.37 45.35 2.41
44 45 8.401955 AACTAAAATCCTGAGGGTTAATAGGA 57.598 34.615 16.87 0.00 43.01 2.94
45 46 8.903820 CAAACTAAAATCCTGAGGGTTAATAGG 58.096 37.037 16.87 3.04 0.00 2.57
46 47 9.681062 TCAAACTAAAATCCTGAGGGTTAATAG 57.319 33.333 12.99 12.99 0.00 1.73
47 48 9.681062 CTCAAACTAAAATCCTGAGGGTTAATA 57.319 33.333 0.00 0.00 31.77 0.98
48 49 7.122799 GCTCAAACTAAAATCCTGAGGGTTAAT 59.877 37.037 0.00 0.00 35.19 1.40
49 50 6.433093 GCTCAAACTAAAATCCTGAGGGTTAA 59.567 38.462 0.00 0.00 35.19 2.01
50 51 5.944007 GCTCAAACTAAAATCCTGAGGGTTA 59.056 40.000 0.00 0.00 35.19 2.85
51 52 4.767409 GCTCAAACTAAAATCCTGAGGGTT 59.233 41.667 0.00 0.00 35.19 4.11
52 53 4.202567 TGCTCAAACTAAAATCCTGAGGGT 60.203 41.667 0.00 0.00 35.19 4.34
53 54 4.335416 TGCTCAAACTAAAATCCTGAGGG 58.665 43.478 0.00 0.00 35.19 4.30
54 55 5.649395 TCATGCTCAAACTAAAATCCTGAGG 59.351 40.000 0.00 0.00 35.19 3.86
55 56 6.748333 TCATGCTCAAACTAAAATCCTGAG 57.252 37.500 0.00 0.00 37.23 3.35
56 57 6.716628 ACTTCATGCTCAAACTAAAATCCTGA 59.283 34.615 0.00 0.00 0.00 3.86
57 58 6.917533 ACTTCATGCTCAAACTAAAATCCTG 58.082 36.000 0.00 0.00 0.00 3.86
58 59 6.716628 TGACTTCATGCTCAAACTAAAATCCT 59.283 34.615 0.00 0.00 0.00 3.24
59 60 6.803807 GTGACTTCATGCTCAAACTAAAATCC 59.196 38.462 0.00 0.00 0.00 3.01
60 61 7.324616 GTGTGACTTCATGCTCAAACTAAAATC 59.675 37.037 0.00 0.00 0.00 2.17
61 62 7.141363 GTGTGACTTCATGCTCAAACTAAAAT 58.859 34.615 0.00 0.00 0.00 1.82
62 63 6.094742 TGTGTGACTTCATGCTCAAACTAAAA 59.905 34.615 8.70 0.00 0.00 1.52
63 64 5.588246 TGTGTGACTTCATGCTCAAACTAAA 59.412 36.000 8.70 0.00 0.00 1.85
64 65 5.122519 TGTGTGACTTCATGCTCAAACTAA 58.877 37.500 8.70 0.00 0.00 2.24
65 66 4.702831 TGTGTGACTTCATGCTCAAACTA 58.297 39.130 8.70 0.00 0.00 2.24
66 67 3.544684 TGTGTGACTTCATGCTCAAACT 58.455 40.909 8.70 0.00 0.00 2.66
67 68 3.969117 TGTGTGACTTCATGCTCAAAC 57.031 42.857 0.00 0.00 0.00 2.93
68 69 5.067544 TGAAATGTGTGACTTCATGCTCAAA 59.932 36.000 0.00 0.00 0.00 2.69
69 70 4.579753 TGAAATGTGTGACTTCATGCTCAA 59.420 37.500 0.00 0.00 0.00 3.02
70 71 4.023792 GTGAAATGTGTGACTTCATGCTCA 60.024 41.667 0.00 0.00 32.08 4.26
71 72 4.214971 AGTGAAATGTGTGACTTCATGCTC 59.785 41.667 0.00 0.00 32.08 4.26
72 73 4.023450 CAGTGAAATGTGTGACTTCATGCT 60.023 41.667 0.00 0.00 32.08 3.79
73 74 4.224433 CAGTGAAATGTGTGACTTCATGC 58.776 43.478 0.00 0.00 32.08 4.06
74 75 5.428496 ACAGTGAAATGTGTGACTTCATG 57.572 39.130 0.00 0.00 32.08 3.07
75 76 6.095300 TCAAACAGTGAAATGTGTGACTTCAT 59.905 34.615 0.00 0.00 41.48 2.57
76 77 5.414144 TCAAACAGTGAAATGTGTGACTTCA 59.586 36.000 0.00 0.00 41.48 3.02
77 78 5.879237 TCAAACAGTGAAATGTGTGACTTC 58.121 37.500 0.00 0.00 41.48 3.01
78 79 5.415701 ACTCAAACAGTGAAATGTGTGACTT 59.584 36.000 0.00 0.00 41.48 3.01
79 80 4.943705 ACTCAAACAGTGAAATGTGTGACT 59.056 37.500 0.00 0.00 41.48 3.41
80 81 5.235305 ACTCAAACAGTGAAATGTGTGAC 57.765 39.130 0.00 0.00 41.48 3.67
81 82 5.895636 AACTCAAACAGTGAAATGTGTGA 57.104 34.783 3.92 3.92 43.58 3.58
82 83 6.092092 TCAAACTCAAACAGTGAAATGTGTG 58.908 36.000 0.00 0.00 39.39 3.82
83 84 6.266168 TCAAACTCAAACAGTGAAATGTGT 57.734 33.333 0.00 0.00 35.22 3.72
84 85 7.329226 AGTTTCAAACTCAAACAGTGAAATGTG 59.671 33.333 0.00 0.00 37.02 3.21
85 86 7.378181 AGTTTCAAACTCAAACAGTGAAATGT 58.622 30.769 0.00 0.00 37.02 2.71
86 87 7.816945 AGTTTCAAACTCAAACAGTGAAATG 57.183 32.000 0.00 0.00 37.02 2.32
88 89 9.352784 CAATAGTTTCAAACTCAAACAGTGAAA 57.647 29.630 5.92 0.00 41.77 2.69
89 90 8.519526 ACAATAGTTTCAAACTCAAACAGTGAA 58.480 29.630 5.92 0.00 41.77 3.18
90 91 8.050778 ACAATAGTTTCAAACTCAAACAGTGA 57.949 30.769 5.92 0.00 41.77 3.41
91 92 8.687824 AACAATAGTTTCAAACTCAAACAGTG 57.312 30.769 5.92 0.88 41.77 3.66
92 93 8.739972 AGAACAATAGTTTCAAACTCAAACAGT 58.260 29.630 5.92 0.00 41.77 3.55
157 158 9.227777 GGTCAAACTATGGTCAAACTACTTATT 57.772 33.333 0.00 0.00 0.00 1.40
158 159 8.380099 TGGTCAAACTATGGTCAAACTACTTAT 58.620 33.333 0.00 0.00 0.00 1.73
159 160 7.658575 GTGGTCAAACTATGGTCAAACTACTTA 59.341 37.037 0.00 0.00 0.00 2.24
160 161 6.485648 GTGGTCAAACTATGGTCAAACTACTT 59.514 38.462 0.00 0.00 0.00 2.24
161 162 5.995897 GTGGTCAAACTATGGTCAAACTACT 59.004 40.000 0.00 0.00 0.00 2.57
162 163 5.761234 TGTGGTCAAACTATGGTCAAACTAC 59.239 40.000 0.00 0.00 0.00 2.73
163 164 5.931294 TGTGGTCAAACTATGGTCAAACTA 58.069 37.500 0.00 0.00 0.00 2.24
164 165 4.787551 TGTGGTCAAACTATGGTCAAACT 58.212 39.130 0.00 0.00 0.00 2.66
165 166 4.578928 ACTGTGGTCAAACTATGGTCAAAC 59.421 41.667 0.00 0.00 0.00 2.93
166 167 4.787551 ACTGTGGTCAAACTATGGTCAAA 58.212 39.130 0.00 0.00 0.00 2.69
167 168 4.431416 ACTGTGGTCAAACTATGGTCAA 57.569 40.909 0.00 0.00 0.00 3.18
168 169 4.431416 AACTGTGGTCAAACTATGGTCA 57.569 40.909 0.00 0.00 0.00 4.02
169 170 4.819630 TCAAACTGTGGTCAAACTATGGTC 59.180 41.667 0.00 0.00 0.00 4.02
170 171 4.578928 GTCAAACTGTGGTCAAACTATGGT 59.421 41.667 0.00 0.00 0.00 3.55
171 172 4.023193 GGTCAAACTGTGGTCAAACTATGG 60.023 45.833 0.00 0.00 0.00 2.74
172 173 4.578516 TGGTCAAACTGTGGTCAAACTATG 59.421 41.667 0.00 0.00 0.00 2.23
173 174 4.787551 TGGTCAAACTGTGGTCAAACTAT 58.212 39.130 0.00 0.00 0.00 2.12
174 175 4.080807 TCTGGTCAAACTGTGGTCAAACTA 60.081 41.667 0.00 0.00 0.00 2.24
175 176 3.016736 CTGGTCAAACTGTGGTCAAACT 58.983 45.455 0.00 0.00 0.00 2.66
176 177 3.013921 TCTGGTCAAACTGTGGTCAAAC 58.986 45.455 0.00 0.00 0.00 2.93
177 178 3.358111 TCTGGTCAAACTGTGGTCAAA 57.642 42.857 0.00 0.00 0.00 2.69
178 179 3.576078 ATCTGGTCAAACTGTGGTCAA 57.424 42.857 0.00 0.00 0.00 3.18
179 180 3.576078 AATCTGGTCAAACTGTGGTCA 57.424 42.857 0.00 0.00 0.00 4.02
180 181 3.882888 TCAAATCTGGTCAAACTGTGGTC 59.117 43.478 0.00 0.00 0.00 4.02
181 182 3.632145 GTCAAATCTGGTCAAACTGTGGT 59.368 43.478 0.00 0.00 0.00 4.16
182 183 3.004734 GGTCAAATCTGGTCAAACTGTGG 59.995 47.826 0.00 0.00 0.00 4.17
183 184 3.631686 TGGTCAAATCTGGTCAAACTGTG 59.368 43.478 0.00 0.00 0.00 3.66
184 185 3.897239 TGGTCAAATCTGGTCAAACTGT 58.103 40.909 0.00 0.00 0.00 3.55
185 186 4.916983 TTGGTCAAATCTGGTCAAACTG 57.083 40.909 0.00 0.00 0.00 3.16
186 187 5.930837 TTTTGGTCAAATCTGGTCAAACT 57.069 34.783 0.00 0.00 30.38 2.66
187 188 6.760770 TGAATTTTGGTCAAATCTGGTCAAAC 59.239 34.615 0.00 0.00 33.60 2.93
188 189 6.882656 TGAATTTTGGTCAAATCTGGTCAAA 58.117 32.000 0.00 0.00 33.60 2.69
189 190 6.477053 TGAATTTTGGTCAAATCTGGTCAA 57.523 33.333 0.00 0.00 33.60 3.18
190 191 6.477053 TTGAATTTTGGTCAAATCTGGTCA 57.523 33.333 0.00 0.00 33.60 4.02
191 192 7.784633 TTTTGAATTTTGGTCAAATCTGGTC 57.215 32.000 0.81 0.00 42.82 4.02
276 277 8.837389 GTTGGTCAAACTACTTATTCAAGAAGT 58.163 33.333 2.39 2.39 40.27 3.01
277 278 8.836413 TGTTGGTCAAACTACTTATTCAAGAAG 58.164 33.333 0.00 0.00 39.70 2.85
278 279 8.740123 TGTTGGTCAAACTACTTATTCAAGAA 57.260 30.769 0.00 0.00 39.70 2.52
279 280 8.918202 ATGTTGGTCAAACTACTTATTCAAGA 57.082 30.769 0.00 0.00 39.70 3.02
280 281 9.965824 AAATGTTGGTCAAACTACTTATTCAAG 57.034 29.630 0.00 0.00 39.70 3.02
281 282 9.743057 CAAATGTTGGTCAAACTACTTATTCAA 57.257 29.630 0.00 0.00 39.70 2.69
282 283 9.126151 TCAAATGTTGGTCAAACTACTTATTCA 57.874 29.630 0.00 0.00 39.70 2.57
283 284 9.612620 CTCAAATGTTGGTCAAACTACTTATTC 57.387 33.333 0.00 0.00 39.70 1.75
284 285 9.131791 ACTCAAATGTTGGTCAAACTACTTATT 57.868 29.630 0.00 0.00 39.70 1.40
285 286 8.567948 CACTCAAATGTTGGTCAAACTACTTAT 58.432 33.333 0.00 0.00 39.70 1.73
286 287 7.012894 CCACTCAAATGTTGGTCAAACTACTTA 59.987 37.037 0.00 0.00 39.70 2.24
287 288 6.183360 CCACTCAAATGTTGGTCAAACTACTT 60.183 38.462 0.00 0.00 39.70 2.24
288 289 5.299279 CCACTCAAATGTTGGTCAAACTACT 59.701 40.000 0.00 0.00 39.70 2.57
289 290 5.298276 TCCACTCAAATGTTGGTCAAACTAC 59.702 40.000 0.00 0.00 39.70 2.73
290 291 5.441500 TCCACTCAAATGTTGGTCAAACTA 58.558 37.500 0.00 0.00 39.70 2.24
291 292 4.277476 TCCACTCAAATGTTGGTCAAACT 58.723 39.130 0.00 0.00 39.70 2.66
292 293 4.647424 TCCACTCAAATGTTGGTCAAAC 57.353 40.909 4.48 0.00 39.41 2.93
293 294 4.892345 TCATCCACTCAAATGTTGGTCAAA 59.108 37.500 4.48 0.00 0.00 2.69
294 295 4.468713 TCATCCACTCAAATGTTGGTCAA 58.531 39.130 4.48 0.00 0.00 3.18
295 296 4.097551 TCATCCACTCAAATGTTGGTCA 57.902 40.909 4.48 0.00 0.00 4.02
296 297 5.649782 AATCATCCACTCAAATGTTGGTC 57.350 39.130 4.48 0.00 0.00 4.02
297 298 7.537596 TTTAATCATCCACTCAAATGTTGGT 57.462 32.000 4.48 0.00 0.00 3.67
298 299 7.010738 GCATTTAATCATCCACTCAAATGTTGG 59.989 37.037 0.00 0.00 36.32 3.77
299 300 7.546316 TGCATTTAATCATCCACTCAAATGTTG 59.454 33.333 0.00 0.00 36.32 3.33
300 301 7.613585 TGCATTTAATCATCCACTCAAATGTT 58.386 30.769 0.00 0.00 36.32 2.71
301 302 7.172868 TGCATTTAATCATCCACTCAAATGT 57.827 32.000 0.00 0.00 36.32 2.71
302 303 7.709182 ACATGCATTTAATCATCCACTCAAATG 59.291 33.333 0.00 0.00 36.77 2.32
303 304 7.788026 ACATGCATTTAATCATCCACTCAAAT 58.212 30.769 0.00 0.00 0.00 2.32
304 305 7.172868 ACATGCATTTAATCATCCACTCAAA 57.827 32.000 0.00 0.00 0.00 2.69
305 306 6.778834 ACATGCATTTAATCATCCACTCAA 57.221 33.333 0.00 0.00 0.00 3.02
306 307 6.778834 AACATGCATTTAATCATCCACTCA 57.221 33.333 0.00 0.00 0.00 3.41
307 308 7.760794 TCAAAACATGCATTTAATCATCCACTC 59.239 33.333 0.00 0.00 0.00 3.51
308 309 7.546667 GTCAAAACATGCATTTAATCATCCACT 59.453 33.333 0.00 0.00 0.00 4.00
309 310 7.546667 AGTCAAAACATGCATTTAATCATCCAC 59.453 33.333 0.00 0.00 0.00 4.02
310 311 7.613585 AGTCAAAACATGCATTTAATCATCCA 58.386 30.769 0.00 0.00 0.00 3.41
311 312 8.483307 AAGTCAAAACATGCATTTAATCATCC 57.517 30.769 0.00 0.00 0.00 3.51
314 315 9.755804 TGTTAAGTCAAAACATGCATTTAATCA 57.244 25.926 0.00 0.00 32.07 2.57
316 317 8.987890 GGTGTTAAGTCAAAACATGCATTTAAT 58.012 29.630 0.00 0.00 38.95 1.40
317 318 7.981789 TGGTGTTAAGTCAAAACATGCATTTAA 59.018 29.630 0.00 0.00 38.95 1.52
318 319 7.492524 TGGTGTTAAGTCAAAACATGCATTTA 58.507 30.769 0.00 0.00 38.95 1.40
319 320 6.344500 TGGTGTTAAGTCAAAACATGCATTT 58.656 32.000 0.00 0.00 38.95 2.32
320 321 5.911752 TGGTGTTAAGTCAAAACATGCATT 58.088 33.333 0.00 0.00 38.95 3.56
321 322 5.528043 TGGTGTTAAGTCAAAACATGCAT 57.472 34.783 0.00 0.00 38.95 3.96
322 323 4.991153 TGGTGTTAAGTCAAAACATGCA 57.009 36.364 0.00 0.00 38.95 3.96
323 324 6.257630 ACAATTGGTGTTAAGTCAAAACATGC 59.742 34.615 10.83 0.00 37.01 4.06
324 325 7.769272 ACAATTGGTGTTAAGTCAAAACATG 57.231 32.000 10.83 0.00 37.01 3.21
338 339 5.426504 TCAGAAAAATGCAACAATTGGTGT 58.573 33.333 23.90 3.44 44.64 4.16
339 340 5.987777 TCAGAAAAATGCAACAATTGGTG 57.012 34.783 19.47 19.47 35.41 4.17
340 341 7.571080 AATTCAGAAAAATGCAACAATTGGT 57.429 28.000 10.83 0.00 0.00 3.67
374 375 4.196971 TGTCTCCTCATATCGTCGAAAGA 58.803 43.478 0.00 0.00 38.16 2.52
375 376 4.553756 TGTCTCCTCATATCGTCGAAAG 57.446 45.455 0.00 0.00 0.00 2.62
376 377 5.507482 GGAATGTCTCCTCATATCGTCGAAA 60.507 44.000 0.00 0.00 41.61 3.46
377 378 4.023107 GGAATGTCTCCTCATATCGTCGAA 60.023 45.833 0.00 0.00 41.61 3.71
378 379 3.502595 GGAATGTCTCCTCATATCGTCGA 59.497 47.826 0.00 0.00 41.61 4.20
379 380 3.366476 GGGAATGTCTCCTCATATCGTCG 60.366 52.174 0.00 0.00 44.68 5.12
380 381 3.574396 TGGGAATGTCTCCTCATATCGTC 59.426 47.826 0.00 0.00 44.68 4.20
381 382 3.576861 TGGGAATGTCTCCTCATATCGT 58.423 45.455 0.00 0.00 44.68 3.73
382 383 4.676459 CGATGGGAATGTCTCCTCATATCG 60.676 50.000 0.00 0.00 44.68 2.92
383 384 4.464244 TCGATGGGAATGTCTCCTCATATC 59.536 45.833 0.00 0.00 44.68 1.63
384 385 4.221703 GTCGATGGGAATGTCTCCTCATAT 59.778 45.833 0.00 0.00 44.68 1.78
385 386 3.574396 GTCGATGGGAATGTCTCCTCATA 59.426 47.826 0.00 0.00 44.68 2.15
386 387 2.366916 GTCGATGGGAATGTCTCCTCAT 59.633 50.000 0.00 0.00 44.68 2.90
387 388 1.757118 GTCGATGGGAATGTCTCCTCA 59.243 52.381 0.00 0.00 44.68 3.86
388 389 2.035632 AGTCGATGGGAATGTCTCCTC 58.964 52.381 0.00 0.00 44.68 3.71
389 390 1.759445 CAGTCGATGGGAATGTCTCCT 59.241 52.381 0.00 0.00 44.68 3.69
390 391 1.808133 GCAGTCGATGGGAATGTCTCC 60.808 57.143 0.00 0.00 42.57 3.71
391 392 1.576356 GCAGTCGATGGGAATGTCTC 58.424 55.000 0.00 0.00 42.57 3.36
392 393 0.179100 CGCAGTCGATGGGAATGTCT 60.179 55.000 0.00 0.00 44.43 3.41
393 394 0.179111 TCGCAGTCGATGGGAATGTC 60.179 55.000 10.59 0.00 46.90 3.06
394 395 1.897423 TCGCAGTCGATGGGAATGT 59.103 52.632 10.59 0.00 46.90 2.71
395 396 4.833811 TCGCAGTCGATGGGAATG 57.166 55.556 10.59 0.00 46.90 2.67
401 402 0.109086 AGACACCTTCGCAGTCGATG 60.109 55.000 0.00 0.00 45.04 3.84
402 403 0.109086 CAGACACCTTCGCAGTCGAT 60.109 55.000 0.00 0.00 45.04 3.59
403 404 1.285950 CAGACACCTTCGCAGTCGA 59.714 57.895 0.00 0.00 43.89 4.20
404 405 1.007271 ACAGACACCTTCGCAGTCG 60.007 57.895 0.00 0.00 37.36 4.18
405 406 0.032130 TCACAGACACCTTCGCAGTC 59.968 55.000 0.00 0.00 0.00 3.51
406 407 0.249489 GTCACAGACACCTTCGCAGT 60.249 55.000 0.00 0.00 32.09 4.40
407 408 1.278172 CGTCACAGACACCTTCGCAG 61.278 60.000 0.00 0.00 32.09 5.18
408 409 1.299850 CGTCACAGACACCTTCGCA 60.300 57.895 0.00 0.00 32.09 5.10
409 410 1.007734 TCGTCACAGACACCTTCGC 60.008 57.895 0.00 0.00 32.09 4.70
410 411 0.311165 AGTCGTCACAGACACCTTCG 59.689 55.000 3.22 0.00 43.24 3.79
411 412 2.395654 GAAGTCGTCACAGACACCTTC 58.604 52.381 8.88 8.88 43.24 3.46
412 413 1.269102 CGAAGTCGTCACAGACACCTT 60.269 52.381 3.22 0.00 43.24 3.50
413 414 0.311165 CGAAGTCGTCACAGACACCT 59.689 55.000 3.22 0.00 43.24 4.00
414 415 2.797515 CGAAGTCGTCACAGACACC 58.202 57.895 3.22 0.00 43.24 4.16
422 423 7.655137 CATCCTCGGATTTACGAAGTCGTCA 62.655 48.000 10.05 0.00 41.52 4.35
423 424 5.308308 CATCCTCGGATTTACGAAGTCGTC 61.308 50.000 10.05 0.00 41.52 4.20
424 425 3.488721 CATCCTCGGATTTACGAAGTCGT 60.489 47.826 11.57 11.57 43.44 4.34
425 426 2.838386 TCCTCGGATTTACGAAGTCG 57.162 50.000 0.00 0.00 43.93 4.18
426 427 4.303086 TCATCCTCGGATTTACGAAGTC 57.697 45.455 0.00 0.00 42.98 3.01
427 428 4.099573 ACATCATCCTCGGATTTACGAAGT 59.900 41.667 0.00 0.00 42.98 3.01
428 429 4.445718 CACATCATCCTCGGATTTACGAAG 59.554 45.833 0.00 0.00 42.98 3.79
429 430 4.142026 ACACATCATCCTCGGATTTACGAA 60.142 41.667 0.00 0.00 42.98 3.85
430 431 3.383505 ACACATCATCCTCGGATTTACGA 59.616 43.478 0.00 0.00 41.13 3.43
431 432 3.717707 ACACATCATCCTCGGATTTACG 58.282 45.455 0.00 0.00 31.62 3.18
432 433 5.921408 GTCTACACATCATCCTCGGATTTAC 59.079 44.000 0.00 0.00 31.62 2.01
433 434 5.833667 AGTCTACACATCATCCTCGGATTTA 59.166 40.000 0.00 0.00 31.62 1.40
434 435 4.651503 AGTCTACACATCATCCTCGGATTT 59.348 41.667 0.00 0.00 31.62 2.17
435 436 4.219115 AGTCTACACATCATCCTCGGATT 58.781 43.478 0.00 0.00 31.62 3.01
436 437 3.823873 GAGTCTACACATCATCCTCGGAT 59.176 47.826 0.00 0.00 34.81 4.18
437 438 3.215151 GAGTCTACACATCATCCTCGGA 58.785 50.000 0.00 0.00 0.00 4.55
438 439 2.952310 TGAGTCTACACATCATCCTCGG 59.048 50.000 0.00 0.00 0.00 4.63
439 440 3.629855 ACTGAGTCTACACATCATCCTCG 59.370 47.826 0.00 0.00 0.00 4.63
440 441 4.887071 AGACTGAGTCTACACATCATCCTC 59.113 45.833 14.47 0.00 41.51 3.71
441 442 4.865905 AGACTGAGTCTACACATCATCCT 58.134 43.478 14.47 0.00 41.51 3.24
442 443 4.887071 AGAGACTGAGTCTACACATCATCC 59.113 45.833 16.17 0.00 43.53 3.51
443 444 5.588246 TGAGAGACTGAGTCTACACATCATC 59.412 44.000 16.17 0.00 43.53 2.92
444 445 5.504853 TGAGAGACTGAGTCTACACATCAT 58.495 41.667 16.17 0.00 43.53 2.45
445 446 4.911390 TGAGAGACTGAGTCTACACATCA 58.089 43.478 16.17 11.55 43.53 3.07
446 447 5.888691 TTGAGAGACTGAGTCTACACATC 57.111 43.478 16.17 9.24 43.53 3.06
447 448 6.656632 TTTTGAGAGACTGAGTCTACACAT 57.343 37.500 16.17 0.00 43.53 3.21
448 449 6.465439 TTTTTGAGAGACTGAGTCTACACA 57.535 37.500 16.17 12.57 43.53 3.72
449 450 8.301002 AGTATTTTTGAGAGACTGAGTCTACAC 58.699 37.037 16.17 10.18 43.53 2.90
450 451 8.410673 AGTATTTTTGAGAGACTGAGTCTACA 57.589 34.615 16.17 15.33 43.53 2.74
471 472 9.507329 CACATGCAAATCCTACCTTATAAGTAT 57.493 33.333 11.50 2.15 0.00 2.12
472 473 8.491134 ACACATGCAAATCCTACCTTATAAGTA 58.509 33.333 11.50 3.77 0.00 2.24
473 474 7.283127 CACACATGCAAATCCTACCTTATAAGT 59.717 37.037 11.50 2.82 0.00 2.24
474 475 7.642669 CACACATGCAAATCCTACCTTATAAG 58.357 38.462 5.43 5.43 0.00 1.73
475 476 7.566760 CACACATGCAAATCCTACCTTATAA 57.433 36.000 0.00 0.00 0.00 0.98
487 488 9.731643 CATCTCTATGAACGCACACATGCAAAT 62.732 40.741 0.00 0.00 43.05 2.32
488 489 8.528090 CATCTCTATGAACGCACACATGCAAA 62.528 42.308 0.00 0.00 43.05 3.68
489 490 7.146569 CATCTCTATGAACGCACACATGCAA 62.147 44.000 0.00 0.00 43.05 4.08
490 491 5.734200 CATCTCTATGAACGCACACATGCA 61.734 45.833 0.00 0.00 43.05 3.96
491 492 3.302935 CATCTCTATGAACGCACACATGC 60.303 47.826 0.00 0.00 41.02 4.06
492 493 4.114794 TCATCTCTATGAACGCACACATG 58.885 43.478 0.00 0.00 39.20 3.21
493 494 4.142071 ACTCATCTCTATGAACGCACACAT 60.142 41.667 0.00 0.00 41.57 3.21
494 495 3.193479 ACTCATCTCTATGAACGCACACA 59.807 43.478 0.00 0.00 41.57 3.72
495 496 3.549471 CACTCATCTCTATGAACGCACAC 59.451 47.826 0.00 0.00 41.57 3.82
496 497 3.193479 ACACTCATCTCTATGAACGCACA 59.807 43.478 0.00 0.00 41.57 4.57
497 498 3.775202 ACACTCATCTCTATGAACGCAC 58.225 45.455 0.00 0.00 41.57 5.34
498 499 5.774498 ATACACTCATCTCTATGAACGCA 57.226 39.130 0.00 0.00 41.57 5.24
499 500 5.107683 GCAATACACTCATCTCTATGAACGC 60.108 44.000 0.00 0.00 41.57 4.84
500 501 5.979517 TGCAATACACTCATCTCTATGAACG 59.020 40.000 0.00 0.00 41.57 3.95
501 502 7.959689 ATGCAATACACTCATCTCTATGAAC 57.040 36.000 0.00 0.00 41.57 3.18
502 503 9.649167 CATATGCAATACACTCATCTCTATGAA 57.351 33.333 0.00 0.00 41.57 2.57
503 504 8.810041 ACATATGCAATACACTCATCTCTATGA 58.190 33.333 1.58 0.00 39.87 2.15
504 505 8.999220 ACATATGCAATACACTCATCTCTATG 57.001 34.615 1.58 0.00 0.00 2.23
506 507 9.264719 CAAACATATGCAATACACTCATCTCTA 57.735 33.333 1.58 0.00 0.00 2.43
507 508 7.228108 CCAAACATATGCAATACACTCATCTCT 59.772 37.037 1.58 0.00 0.00 3.10
508 509 7.358066 CCAAACATATGCAATACACTCATCTC 58.642 38.462 1.58 0.00 0.00 2.75
509 510 6.263842 CCCAAACATATGCAATACACTCATCT 59.736 38.462 1.58 0.00 0.00 2.90
510 511 6.039717 ACCCAAACATATGCAATACACTCATC 59.960 38.462 1.58 0.00 0.00 2.92
511 512 5.893255 ACCCAAACATATGCAATACACTCAT 59.107 36.000 1.58 0.00 0.00 2.90
512 513 5.125257 CACCCAAACATATGCAATACACTCA 59.875 40.000 1.58 0.00 0.00 3.41
513 514 5.581605 CACCCAAACATATGCAATACACTC 58.418 41.667 1.58 0.00 0.00 3.51
514 515 4.142182 GCACCCAAACATATGCAATACACT 60.142 41.667 1.58 0.00 38.00 3.55
515 516 4.111916 GCACCCAAACATATGCAATACAC 58.888 43.478 1.58 0.00 38.00 2.90
516 517 3.181492 CGCACCCAAACATATGCAATACA 60.181 43.478 1.58 0.00 37.97 2.29
517 518 3.181491 ACGCACCCAAACATATGCAATAC 60.181 43.478 1.58 0.00 37.97 1.89
518 519 3.020274 ACGCACCCAAACATATGCAATA 58.980 40.909 1.58 0.00 37.97 1.90
519 520 1.824230 ACGCACCCAAACATATGCAAT 59.176 42.857 1.58 0.00 37.97 3.56
520 521 1.067985 CACGCACCCAAACATATGCAA 60.068 47.619 1.58 0.00 37.97 4.08
521 522 0.525311 CACGCACCCAAACATATGCA 59.475 50.000 1.58 0.00 37.97 3.96
522 523 0.801836 GCACGCACCCAAACATATGC 60.802 55.000 1.58 0.00 34.66 3.14
523 524 0.523125 CGCACGCACCCAAACATATG 60.523 55.000 0.00 0.00 0.00 1.78
524 525 0.958382 ACGCACGCACCCAAACATAT 60.958 50.000 0.00 0.00 0.00 1.78
525 526 1.570347 GACGCACGCACCCAAACATA 61.570 55.000 0.00 0.00 0.00 2.29
526 527 2.903547 GACGCACGCACCCAAACAT 61.904 57.895 0.00 0.00 0.00 2.71
527 528 3.578272 GACGCACGCACCCAAACA 61.578 61.111 0.00 0.00 0.00 2.83
528 529 3.276846 AGACGCACGCACCCAAAC 61.277 61.111 0.00 0.00 0.00 2.93
529 530 2.646117 TACAGACGCACGCACCCAAA 62.646 55.000 0.00 0.00 0.00 3.28
530 531 3.153270 TACAGACGCACGCACCCAA 62.153 57.895 0.00 0.00 0.00 4.12
531 532 3.607661 TACAGACGCACGCACCCA 61.608 61.111 0.00 0.00 0.00 4.51
532 533 3.110178 GTACAGACGCACGCACCC 61.110 66.667 0.00 0.00 0.00 4.61
533 534 2.049433 AGTACAGACGCACGCACC 60.049 61.111 0.00 0.00 0.00 5.01
534 535 1.371267 TCAGTACAGACGCACGCAC 60.371 57.895 0.00 0.00 0.00 5.34
535 536 1.371267 GTCAGTACAGACGCACGCA 60.371 57.895 2.36 0.00 0.00 5.24
536 537 2.087009 GGTCAGTACAGACGCACGC 61.087 63.158 11.74 0.00 39.42 5.34
537 538 0.800631 TAGGTCAGTACAGACGCACG 59.199 55.000 11.74 0.00 39.42 5.34
538 539 2.985139 GTTTAGGTCAGTACAGACGCAC 59.015 50.000 11.74 3.07 39.42 5.34
539 540 2.351060 CGTTTAGGTCAGTACAGACGCA 60.351 50.000 11.74 0.11 39.42 5.24
540 541 2.095567 TCGTTTAGGTCAGTACAGACGC 60.096 50.000 11.74 5.73 39.42 5.19
541 542 3.434641 TCTCGTTTAGGTCAGTACAGACG 59.565 47.826 11.74 1.07 39.42 4.18
542 543 4.668686 CGTCTCGTTTAGGTCAGTACAGAC 60.669 50.000 9.78 9.78 37.80 3.51
543 544 3.434641 CGTCTCGTTTAGGTCAGTACAGA 59.565 47.826 0.00 0.00 0.00 3.41
544 545 3.744987 CGTCTCGTTTAGGTCAGTACAG 58.255 50.000 0.00 0.00 0.00 2.74
545 546 2.095567 GCGTCTCGTTTAGGTCAGTACA 60.096 50.000 0.00 0.00 0.00 2.90
546 547 2.095567 TGCGTCTCGTTTAGGTCAGTAC 60.096 50.000 0.00 0.00 0.00 2.73
547 548 2.095567 GTGCGTCTCGTTTAGGTCAGTA 60.096 50.000 0.00 0.00 0.00 2.74
548 549 0.956633 TGCGTCTCGTTTAGGTCAGT 59.043 50.000 0.00 0.00 0.00 3.41
549 550 1.337821 GTGCGTCTCGTTTAGGTCAG 58.662 55.000 0.00 0.00 0.00 3.51
550 551 0.038892 GGTGCGTCTCGTTTAGGTCA 60.039 55.000 0.00 0.00 0.00 4.02
551 552 1.069378 CGGTGCGTCTCGTTTAGGTC 61.069 60.000 0.00 0.00 0.00 3.85
552 553 1.080974 CGGTGCGTCTCGTTTAGGT 60.081 57.895 0.00 0.00 0.00 3.08
553 554 1.080974 ACGGTGCGTCTCGTTTAGG 60.081 57.895 0.00 0.00 33.69 2.69
554 555 4.546637 ACGGTGCGTCTCGTTTAG 57.453 55.556 0.00 0.00 33.69 1.85
565 566 0.796927 GAAAACTAGCAGGACGGTGC 59.203 55.000 0.00 0.00 44.35 5.01
566 567 2.457366 AGAAAACTAGCAGGACGGTG 57.543 50.000 0.00 0.00 0.00 4.94
567 568 3.679083 GCATAGAAAACTAGCAGGACGGT 60.679 47.826 0.00 0.00 0.00 4.83
568 569 2.866762 GCATAGAAAACTAGCAGGACGG 59.133 50.000 0.00 0.00 0.00 4.79
569 570 2.866762 GGCATAGAAAACTAGCAGGACG 59.133 50.000 0.00 0.00 0.00 4.79
570 571 3.873910 TGGCATAGAAAACTAGCAGGAC 58.126 45.455 0.00 0.00 0.00 3.85
571 572 3.519510 ACTGGCATAGAAAACTAGCAGGA 59.480 43.478 0.00 0.00 0.00 3.86
572 573 3.873952 GACTGGCATAGAAAACTAGCAGG 59.126 47.826 0.00 0.00 0.00 4.85
573 574 3.873952 GGACTGGCATAGAAAACTAGCAG 59.126 47.826 0.00 0.00 0.00 4.24
574 575 3.678806 CGGACTGGCATAGAAAACTAGCA 60.679 47.826 0.00 0.00 0.00 3.49
575 576 2.866762 CGGACTGGCATAGAAAACTAGC 59.133 50.000 0.00 0.00 0.00 3.42
576 577 4.124851 ACGGACTGGCATAGAAAACTAG 57.875 45.455 0.00 0.00 0.00 2.57
577 578 4.546829 AACGGACTGGCATAGAAAACTA 57.453 40.909 0.00 0.00 0.00 2.24
578 579 3.418684 AACGGACTGGCATAGAAAACT 57.581 42.857 0.00 0.00 0.00 2.66
579 580 5.180680 AGTTTAACGGACTGGCATAGAAAAC 59.819 40.000 0.00 0.00 0.00 2.43
580 581 5.310451 AGTTTAACGGACTGGCATAGAAAA 58.690 37.500 0.00 0.00 0.00 2.29
581 582 4.901868 AGTTTAACGGACTGGCATAGAAA 58.098 39.130 0.00 0.00 0.00 2.52
582 583 4.546829 AGTTTAACGGACTGGCATAGAA 57.453 40.909 0.00 0.00 0.00 2.10
583 584 4.546829 AAGTTTAACGGACTGGCATAGA 57.453 40.909 0.00 0.00 0.00 1.98
584 585 5.622770 AAAAGTTTAACGGACTGGCATAG 57.377 39.130 0.00 0.00 0.00 2.23
586 587 4.929819 AAAAAGTTTAACGGACTGGCAT 57.070 36.364 0.00 0.00 0.00 4.40
604 605 9.607988 GAAAAGTCCCCTCAATTTTTCTAAAAA 57.392 29.630 3.29 3.29 41.59 1.94
605 606 8.763601 TGAAAAGTCCCCTCAATTTTTCTAAAA 58.236 29.630 8.78 0.00 38.14 1.52
606 607 8.312669 TGAAAAGTCCCCTCAATTTTTCTAAA 57.687 30.769 8.78 0.00 38.14 1.85
607 608 7.906199 TGAAAAGTCCCCTCAATTTTTCTAA 57.094 32.000 8.78 0.00 38.14 2.10
608 609 7.906199 TTGAAAAGTCCCCTCAATTTTTCTA 57.094 32.000 8.78 0.51 38.14 2.10
609 610 6.806668 TTGAAAAGTCCCCTCAATTTTTCT 57.193 33.333 8.78 0.00 38.14 2.52
610 611 7.857734 TTTTGAAAAGTCCCCTCAATTTTTC 57.142 32.000 0.00 0.00 37.92 2.29
611 612 8.821686 AATTTTGAAAAGTCCCCTCAATTTTT 57.178 26.923 0.00 0.00 0.00 1.94
612 613 8.821686 AAATTTTGAAAAGTCCCCTCAATTTT 57.178 26.923 0.00 0.00 0.00 1.82
614 615 9.725019 GATAAATTTTGAAAAGTCCCCTCAATT 57.275 29.630 0.00 0.00 0.00 2.32
615 616 8.879227 TGATAAATTTTGAAAAGTCCCCTCAAT 58.121 29.630 0.00 0.00 0.00 2.57
616 617 8.256356 TGATAAATTTTGAAAAGTCCCCTCAA 57.744 30.769 0.00 0.00 0.00 3.02
617 618 7.847711 TGATAAATTTTGAAAAGTCCCCTCA 57.152 32.000 0.00 0.00 0.00 3.86
618 619 9.803315 GTATGATAAATTTTGAAAAGTCCCCTC 57.197 33.333 0.00 0.00 0.00 4.30
619 620 9.547279 AGTATGATAAATTTTGAAAAGTCCCCT 57.453 29.630 0.00 0.00 0.00 4.79
620 621 9.803315 GAGTATGATAAATTTTGAAAAGTCCCC 57.197 33.333 0.00 0.00 0.00 4.81
638 639 4.078537 CCTCGTCATCCAGAGAGTATGAT 58.921 47.826 0.00 0.00 36.65 2.45
640 641 3.252215 GTCCTCGTCATCCAGAGAGTATG 59.748 52.174 0.00 0.00 36.65 2.39
642 643 2.238898 TGTCCTCGTCATCCAGAGAGTA 59.761 50.000 0.00 0.00 36.65 2.59
643 644 1.004862 TGTCCTCGTCATCCAGAGAGT 59.995 52.381 0.00 0.00 36.65 3.24
650 656 2.501610 GGCCTGTCCTCGTCATCC 59.498 66.667 0.00 0.00 0.00 3.51
799 816 2.365408 AAGAAAACGCGTAGAGAGGG 57.635 50.000 14.46 0.00 0.00 4.30
1253 1285 3.456431 CTACGGACGGAGCGCAGAG 62.456 68.421 11.47 1.66 0.00 3.35
1254 1286 3.506096 CTACGGACGGAGCGCAGA 61.506 66.667 11.47 0.00 0.00 4.26
1255 1287 4.554363 CCTACGGACGGAGCGCAG 62.554 72.222 11.47 2.53 0.00 5.18
1360 1395 2.079925 GCCTGAACTTAGCACAGAAGG 58.920 52.381 7.58 0.00 34.07 3.46
1382 1421 2.337246 CGGCTTTAAACCACGGGGG 61.337 63.158 9.50 0.00 44.81 5.40
1405 1445 7.812669 CCTATACCACCAAGCAAAAACTAAAAG 59.187 37.037 0.00 0.00 0.00 2.27
1409 1449 6.129414 TCCTATACCACCAAGCAAAAACTA 57.871 37.500 0.00 0.00 0.00 2.24
1410 1450 4.993028 TCCTATACCACCAAGCAAAAACT 58.007 39.130 0.00 0.00 0.00 2.66
1411 1451 5.715434 TTCCTATACCACCAAGCAAAAAC 57.285 39.130 0.00 0.00 0.00 2.43
1412 1452 6.071051 GGAATTCCTATACCACCAAGCAAAAA 60.071 38.462 17.73 0.00 0.00 1.94
1456 1496 2.028930 CAGCGAACCCACTAGAACTTCT 60.029 50.000 0.00 0.00 0.00 2.85
1466 1506 1.227853 ACCAGAACAGCGAACCCAC 60.228 57.895 0.00 0.00 0.00 4.61
1482 1522 4.009675 TGTTCAATCCAAGATGCTACACC 58.990 43.478 0.00 0.00 0.00 4.16
1485 1525 5.587844 ACATCTGTTCAATCCAAGATGCTAC 59.412 40.000 10.59 0.00 37.31 3.58
1535 1575 5.298026 TGAGAGGAAGATGAATCGTACAGAG 59.702 44.000 0.00 0.00 0.00 3.35
1568 1608 4.819761 TCATCAGCCGGTCAGCGC 62.820 66.667 1.90 0.00 38.01 5.92
1571 1611 0.933097 CGAATTCATCAGCCGGTCAG 59.067 55.000 1.90 0.00 0.00 3.51
1577 1617 0.931005 GACGGACGAATTCATCAGCC 59.069 55.000 3.65 0.00 0.00 4.85
1593 1633 0.109272 TGCCACGCTTCTCTAAGACG 60.109 55.000 0.00 0.00 37.86 4.18
1632 1673 3.820467 AGCGATTTGAGGTTTGACATTGA 59.180 39.130 0.00 0.00 0.00 2.57
1633 1674 4.164822 AGCGATTTGAGGTTTGACATTG 57.835 40.909 0.00 0.00 0.00 2.82
1684 1729 4.938226 AGAGCTTTAACAGTTAGCACCATC 59.062 41.667 10.15 0.36 37.37 3.51
1751 1806 3.418684 TCCCTCAAACAGTCCTTAAGC 57.581 47.619 0.00 0.00 0.00 3.09
1769 1824 8.582657 TCTCTAATAGTATGAACAGCCTATCC 57.417 38.462 0.00 0.00 0.00 2.59
1868 1923 5.129320 AGAAAGTTTCATGGGCTTTCAAGTT 59.871 36.000 24.86 11.93 46.09 2.66
1988 2044 3.648067 TGAATGAACAGGGTCTCACTCTT 59.352 43.478 0.00 0.00 0.00 2.85
2135 2203 0.324091 CAGTACCGACCCCCACTACT 60.324 60.000 0.00 0.00 0.00 2.57
2137 2205 1.000739 CCAGTACCGACCCCCACTA 59.999 63.158 0.00 0.00 0.00 2.74
2145 2213 0.526662 CTGTGGACTCCAGTACCGAC 59.473 60.000 0.00 0.00 32.34 4.79
2222 2290 6.015180 TCAGCTGCAAATTCCTGAAATAAACT 60.015 34.615 9.47 0.00 31.90 2.66
2232 2300 1.074405 TCACCTCAGCTGCAAATTCCT 59.926 47.619 9.47 0.00 0.00 3.36
2249 2317 5.504392 CCCACTTAACAAAACTACGTTCAC 58.496 41.667 0.00 0.00 0.00 3.18
2286 2354 3.691609 AGAGGAAGCCAATTCGAAATGTC 59.308 43.478 12.05 0.00 38.95 3.06
2366 2451 3.074412 CAGAACGTGGGCAATTAGTCTT 58.926 45.455 0.00 0.00 0.00 3.01
2376 2461 0.249741 ACACAGTACAGAACGTGGGC 60.250 55.000 0.00 0.00 37.11 5.36
2385 2470 5.232202 CACTCAACACACTAACACAGTACAG 59.768 44.000 0.00 0.00 34.98 2.74
2433 2518 9.219603 TCATGAAAAGAAAGAAGTGTGGTATAG 57.780 33.333 0.00 0.00 0.00 1.31
2457 2542 9.434275 TCCTGAGGTAAATTATGAGTCTATTCA 57.566 33.333 0.00 0.00 0.00 2.57
2487 2572 8.915654 CAGATTTGGCAAAAGAGTTTACAATAC 58.084 33.333 17.70 0.00 0.00 1.89
3235 3328 8.657074 ATTGAGATGCCAAATGAAAATATGTG 57.343 30.769 0.00 0.00 0.00 3.21
3300 3393 1.202031 GCGTACTAGGTTGTTGCATGC 60.202 52.381 11.82 11.82 0.00 4.06
3599 3739 1.068333 GCACGCACCTCATCAACATTT 60.068 47.619 0.00 0.00 0.00 2.32
3601 3741 0.606130 TGCACGCACCTCATCAACAT 60.606 50.000 0.00 0.00 0.00 2.71
3658 4338 4.951715 TGAAATGGCAGATAATGACTTGCT 59.048 37.500 0.00 0.00 38.04 3.91
3680 4360 0.612732 ACCCATGGCCTCAACACATG 60.613 55.000 6.09 0.00 41.15 3.21
3681 4361 0.323725 GACCCATGGCCTCAACACAT 60.324 55.000 6.09 0.00 0.00 3.21
3776 4456 6.596106 TGTAGAAGCGGTTAAAATATCAGCAA 59.404 34.615 0.00 0.00 0.00 3.91
3787 4467 8.875803 CAATGTACTTATTGTAGAAGCGGTTAA 58.124 33.333 0.00 0.00 34.21 2.01
3793 4473 7.625828 AACCCAATGTACTTATTGTAGAAGC 57.374 36.000 5.49 0.00 36.54 3.86
3814 4494 6.403878 TGACTTGTAGTAATCCAAGCTAACC 58.596 40.000 0.00 0.00 41.36 2.85
3892 4572 7.771361 TCAGTGTAAGAAAGTGAATGGTAAACA 59.229 33.333 0.00 0.00 0.00 2.83
4014 4694 0.251253 TCATGGCACCAGCATTGTCA 60.251 50.000 0.00 0.00 44.61 3.58
4077 4757 4.097135 GCTTTCCCTTTCTTATCAGAAGGC 59.903 45.833 0.00 0.00 40.28 4.35
4173 4853 6.538742 CCATCACAATAACTCATTTCGTACCT 59.461 38.462 0.00 0.00 0.00 3.08
4177 4857 5.065218 GCTCCATCACAATAACTCATTTCGT 59.935 40.000 0.00 0.00 0.00 3.85
4250 4931 0.386352 CAACAGCATGCAGGTTGACG 60.386 55.000 33.86 17.78 43.41 4.35
4418 5100 2.915349 CAATCTCCACCACAGGATGAG 58.085 52.381 0.00 0.00 39.69 2.90
4544 5228 3.379240 CAGTCATTCTCTACCATCAGCG 58.621 50.000 0.00 0.00 0.00 5.18
4574 5258 2.679837 CTCCGCGAACTTGGTACTACTA 59.320 50.000 8.23 0.00 0.00 1.82
4575 5259 1.471684 CTCCGCGAACTTGGTACTACT 59.528 52.381 8.23 0.00 0.00 2.57
4576 5260 1.468736 CCTCCGCGAACTTGGTACTAC 60.469 57.143 8.23 0.00 0.00 2.73
4580 5264 1.474332 AACCCTCCGCGAACTTGGTA 61.474 55.000 8.23 0.00 0.00 3.25
4592 5276 1.266867 TAACCCTACCGCAACCCTCC 61.267 60.000 0.00 0.00 0.00 4.30
4717 5402 5.070580 GCTAGGTACCATGAGTTCATTAGGT 59.929 44.000 15.94 8.60 36.79 3.08
4720 5405 5.661312 ACTGCTAGGTACCATGAGTTCATTA 59.339 40.000 15.94 0.00 33.61 1.90
4730 5415 3.844211 TGGAAGAAACTGCTAGGTACCAT 59.156 43.478 15.94 1.66 0.00 3.55
4733 5418 5.148651 TCTTGGAAGAAACTGCTAGGTAC 57.851 43.478 0.00 0.00 30.73 3.34
4738 5423 9.466497 AAATCATAATCTTGGAAGAAACTGCTA 57.534 29.630 0.00 0.00 38.77 3.49
4806 5491 7.213178 AGGTAACAGAGTGAATTAATGGGAT 57.787 36.000 0.00 0.00 41.41 3.85
4814 5499 4.718961 ACTGCAAGGTAACAGAGTGAATT 58.281 39.130 0.00 0.00 39.30 2.17
4816 5501 3.388024 AGACTGCAAGGTAACAGAGTGAA 59.612 43.478 0.00 0.00 39.30 3.18
4820 5505 3.993081 CTGAAGACTGCAAGGTAACAGAG 59.007 47.826 0.00 0.00 39.30 3.35
4822 5507 2.481952 GCTGAAGACTGCAAGGTAACAG 59.518 50.000 0.00 0.00 39.30 3.16
4864 5549 5.874810 ACTTTCGAGCTCAAAGCACATATAA 59.125 36.000 25.57 2.23 45.56 0.98
4872 5557 1.802069 AGGACTTTCGAGCTCAAAGC 58.198 50.000 25.57 20.32 42.84 3.51
4873 5558 5.290643 CAGAATAGGACTTTCGAGCTCAAAG 59.709 44.000 24.71 24.71 36.97 2.77
4984 5669 8.574251 TGTAGGCATACAAAACATTTGTCTAT 57.426 30.769 9.11 0.00 38.97 1.98
4986 5671 6.892658 TGTAGGCATACAAAACATTTGTCT 57.107 33.333 9.11 6.07 38.97 3.41
5005 5690 8.523523 TGTCATTTCATGCTCAAATTTTGTAG 57.476 30.769 8.89 6.62 0.00 2.74
5007 5692 7.972832 ATGTCATTTCATGCTCAAATTTTGT 57.027 28.000 8.89 0.00 0.00 2.83
5027 5712 4.095410 TGCAATGATTTCCACGAATGTC 57.905 40.909 0.00 0.00 0.00 3.06
5045 5730 8.001881 TGAGGTACTAATTTTGTCTTTTTGCA 57.998 30.769 0.00 0.00 41.55 4.08
5095 5783 5.618561 GTCAAACATCTGACATTACGGAAC 58.381 41.667 0.00 0.00 44.32 3.62
5135 5828 8.158789 CCCCCGTCCTATAATGTAAAAGATTTA 58.841 37.037 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.