Multiple sequence alignment - TraesCS7A01G124300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G124300 chr7A 100.000 3273 0 0 1 3273 80131798 80135070 0.000000e+00 6045
1 TraesCS7A01G124300 chr7A 89.066 1692 78 45 615 2275 80085272 80086887 0.000000e+00 2001
2 TraesCS7A01G124300 chr7A 89.933 745 46 13 2534 3272 20595726 20595005 0.000000e+00 933
3 TraesCS7A01G124300 chr7A 85.387 568 69 13 1706 2266 670946629 670946069 7.870000e-161 577
4 TraesCS7A01G124300 chr7A 89.888 267 24 3 51 315 556161080 556161345 1.120000e-89 340
5 TraesCS7A01G124300 chr7A 89.883 257 25 1 61 316 493632939 493632683 2.430000e-86 329
6 TraesCS7A01G124300 chr7B 88.760 1726 131 38 827 2533 22435613 22437294 0.000000e+00 2054
7 TraesCS7A01G124300 chr7B 87.591 1652 95 52 651 2275 22260060 22261628 0.000000e+00 1814
8 TraesCS7A01G124300 chr7B 79.739 918 139 36 1369 2274 643292473 643291591 3.590000e-174 621
9 TraesCS7A01G124300 chr7B 85.263 570 68 14 1706 2267 643295731 643295170 1.020000e-159 573
10 TraesCS7A01G124300 chr7B 84.386 570 69 17 1706 2267 643462864 643463421 2.870000e-150 542
11 TraesCS7A01G124300 chr7B 79.688 320 22 23 453 732 22435267 22435583 1.200000e-44 191
12 TraesCS7A01G124300 chr2A 97.439 742 19 0 2531 3272 646631953 646631212 0.000000e+00 1266
13 TraesCS7A01G124300 chr2A 85.586 777 42 23 2531 3272 361457983 361458724 0.000000e+00 750
14 TraesCS7A01G124300 chr7D 93.826 826 49 2 1701 2525 75948184 75949008 0.000000e+00 1242
15 TraesCS7A01G124300 chr7D 87.714 993 72 33 615 1578 75947069 75948040 0.000000e+00 1112
16 TraesCS7A01G124300 chr7D 85.565 575 70 12 1707 2274 579099731 579099163 1.010000e-164 590
17 TraesCS7A01G124300 chr7D 91.011 89 7 1 453 541 75946873 75946960 5.740000e-23 119
18 TraesCS7A01G124300 chr4A 94.317 739 23 4 2534 3272 614034017 614034736 0.000000e+00 1114
19 TraesCS7A01G124300 chr4A 89.235 353 29 6 2531 2879 31397776 31397429 1.800000e-117 433
20 TraesCS7A01G124300 chr4A 87.568 370 39 4 2533 2899 613610086 613609721 3.900000e-114 422
21 TraesCS7A01G124300 chr4A 89.931 288 18 4 2985 3272 145730959 145731235 8.630000e-96 361
22 TraesCS7A01G124300 chr4A 90.763 249 22 1 61 308 707022024 707022272 6.770000e-87 331
23 TraesCS7A01G124300 chr6A 90.028 361 29 6 2532 2888 604154317 604154674 8.270000e-126 460
24 TraesCS7A01G124300 chr3A 87.819 353 33 7 2534 2879 730193531 730193182 3.930000e-109 405
25 TraesCS7A01G124300 chr3A 83.548 389 41 15 2533 2913 142577084 142576711 3.130000e-90 342
26 TraesCS7A01G124300 chr1A 87.714 350 27 11 2534 2870 585345243 585345589 8.510000e-106 394
27 TraesCS7A01G124300 chr2D 90.875 263 21 2 51 312 541547281 541547541 1.870000e-92 350
28 TraesCS7A01G124300 chr5B 89.963 269 21 5 46 312 198382050 198381786 3.130000e-90 342
29 TraesCS7A01G124300 chr3D 90.514 253 23 1 61 312 269465749 269465497 1.880000e-87 333
30 TraesCS7A01G124300 chr6B 90.438 251 23 1 59 308 347227397 347227147 2.430000e-86 329
31 TraesCS7A01G124300 chr1D 90.234 256 20 5 58 309 423305723 423305469 2.430000e-86 329
32 TraesCS7A01G124300 chr6D 89.231 260 26 2 51 309 450269324 450269582 1.130000e-84 324


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G124300 chr7A 80131798 80135070 3272 False 6045.000000 6045 100.000000 1 3273 1 chr7A.!!$F2 3272
1 TraesCS7A01G124300 chr7A 80085272 80086887 1615 False 2001.000000 2001 89.066000 615 2275 1 chr7A.!!$F1 1660
2 TraesCS7A01G124300 chr7A 20595005 20595726 721 True 933.000000 933 89.933000 2534 3272 1 chr7A.!!$R1 738
3 TraesCS7A01G124300 chr7A 670946069 670946629 560 True 577.000000 577 85.387000 1706 2266 1 chr7A.!!$R3 560
4 TraesCS7A01G124300 chr7B 22260060 22261628 1568 False 1814.000000 1814 87.591000 651 2275 1 chr7B.!!$F1 1624
5 TraesCS7A01G124300 chr7B 22435267 22437294 2027 False 1122.500000 2054 84.224000 453 2533 2 chr7B.!!$F3 2080
6 TraesCS7A01G124300 chr7B 643291591 643295731 4140 True 597.000000 621 82.501000 1369 2274 2 chr7B.!!$R1 905
7 TraesCS7A01G124300 chr7B 643462864 643463421 557 False 542.000000 542 84.386000 1706 2267 1 chr7B.!!$F2 561
8 TraesCS7A01G124300 chr2A 646631212 646631953 741 True 1266.000000 1266 97.439000 2531 3272 1 chr2A.!!$R1 741
9 TraesCS7A01G124300 chr2A 361457983 361458724 741 False 750.000000 750 85.586000 2531 3272 1 chr2A.!!$F1 741
10 TraesCS7A01G124300 chr7D 75946873 75949008 2135 False 824.333333 1242 90.850333 453 2525 3 chr7D.!!$F1 2072
11 TraesCS7A01G124300 chr7D 579099163 579099731 568 True 590.000000 590 85.565000 1707 2274 1 chr7D.!!$R1 567
12 TraesCS7A01G124300 chr4A 614034017 614034736 719 False 1114.000000 1114 94.317000 2534 3272 1 chr4A.!!$F2 738

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
409 410 0.030235 GCAGGTTCGTTGGTTGGTTC 59.970 55.0 0.00 0.00 0.00 3.62 F
413 414 0.042794 GTTCGTTGGTTGGTTCGTCG 60.043 55.0 0.00 0.00 0.00 5.12 F
1594 3518 0.108377 TACAGTACGTGCCTGCATGG 60.108 55.0 15.24 4.23 37.27 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1612 3536 0.518195 CACATGCATGCAGAACGTGA 59.482 50.000 26.69 0.0 37.49 4.35 R
2082 4039 4.767255 GGTCGGAGTGCAGCAGGG 62.767 72.222 0.00 0.0 0.00 4.45 R
2750 4709 1.000171 CAGACACTCAGCAGTAGCACA 60.000 52.381 0.00 0.0 45.49 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.667470 GGACAGAGGGAGTACTATGCA 58.333 52.381 0.00 0.00 33.13 3.96
21 22 3.235200 GGACAGAGGGAGTACTATGCAT 58.765 50.000 3.79 3.79 33.13 3.96
23 24 3.639094 GACAGAGGGAGTACTATGCATGT 59.361 47.826 10.16 8.18 33.13 3.21
24 25 4.804597 ACAGAGGGAGTACTATGCATGTA 58.195 43.478 10.16 7.15 33.13 2.29
25 26 4.585162 ACAGAGGGAGTACTATGCATGTAC 59.415 45.833 21.78 21.78 40.19 2.90
26 27 4.584743 CAGAGGGAGTACTATGCATGTACA 59.415 45.833 26.73 0.00 41.76 2.90
27 28 4.585162 AGAGGGAGTACTATGCATGTACAC 59.415 45.833 26.73 22.84 41.76 2.90
28 29 4.286707 AGGGAGTACTATGCATGTACACA 58.713 43.478 26.73 0.00 41.76 3.72
30 31 4.099573 GGGAGTACTATGCATGTACACACT 59.900 45.833 26.73 16.21 41.76 3.55
31 32 5.301045 GGGAGTACTATGCATGTACACACTA 59.699 44.000 26.73 2.11 41.76 2.74
32 33 6.439599 GGAGTACTATGCATGTACACACTAG 58.560 44.000 26.73 11.96 41.76 2.57
33 34 6.262496 GGAGTACTATGCATGTACACACTAGA 59.738 42.308 26.73 1.07 41.76 2.43
36 37 3.827008 ATGCATGTACACACTAGAGGG 57.173 47.619 0.00 0.00 0.00 4.30
38 39 1.207089 GCATGTACACACTAGAGGGCA 59.793 52.381 0.00 0.00 0.00 5.36
39 40 2.893637 CATGTACACACTAGAGGGCAC 58.106 52.381 0.00 0.00 0.00 5.01
40 41 2.304221 TGTACACACTAGAGGGCACT 57.696 50.000 0.00 0.00 0.00 4.40
41 42 3.444792 TGTACACACTAGAGGGCACTA 57.555 47.619 0.00 0.00 0.00 2.74
42 43 3.087031 TGTACACACTAGAGGGCACTAC 58.913 50.000 0.00 0.00 0.00 2.73
43 44 2.304221 ACACACTAGAGGGCACTACA 57.696 50.000 0.00 0.00 0.00 2.74
44 45 2.821437 ACACACTAGAGGGCACTACAT 58.179 47.619 0.00 0.00 0.00 2.29
45 46 3.173965 ACACACTAGAGGGCACTACATT 58.826 45.455 0.00 0.00 0.00 2.71
48 49 4.081420 CACACTAGAGGGCACTACATTTCT 60.081 45.833 0.00 0.00 0.00 2.52
49 50 4.532521 ACACTAGAGGGCACTACATTTCTT 59.467 41.667 0.00 0.00 0.00 2.52
50 51 5.013183 ACACTAGAGGGCACTACATTTCTTT 59.987 40.000 0.00 0.00 0.00 2.52
51 52 5.940470 CACTAGAGGGCACTACATTTCTTTT 59.060 40.000 0.00 0.00 0.00 2.27
52 53 6.431234 CACTAGAGGGCACTACATTTCTTTTT 59.569 38.462 0.00 0.00 0.00 1.94
55 56 4.394729 AGGGCACTACATTTCTTTTTCGA 58.605 39.130 0.00 0.00 0.00 3.71
56 57 4.455877 AGGGCACTACATTTCTTTTTCGAG 59.544 41.667 0.00 0.00 0.00 4.04
57 58 4.215613 GGGCACTACATTTCTTTTTCGAGT 59.784 41.667 0.00 0.00 0.00 4.18
59 60 6.304882 GGCACTACATTTCTTTTTCGAGTAC 58.695 40.000 0.00 0.00 0.00 2.73
60 61 6.073440 GGCACTACATTTCTTTTTCGAGTACA 60.073 38.462 0.00 0.00 0.00 2.90
63 64 9.188588 CACTACATTTCTTTTTCGAGTACACTA 57.811 33.333 0.00 0.00 0.00 2.74
65 66 9.408069 CTACATTTCTTTTTCGAGTACACTAGT 57.592 33.333 0.00 0.00 0.00 2.57
66 67 8.295569 ACATTTCTTTTTCGAGTACACTAGTC 57.704 34.615 0.00 0.00 0.00 2.59
67 68 7.924412 ACATTTCTTTTTCGAGTACACTAGTCA 59.076 33.333 0.00 0.00 0.00 3.41
69 70 8.882415 TTTCTTTTTCGAGTACACTAGTCAAT 57.118 30.769 0.00 0.00 0.00 2.57
70 71 8.882415 TTCTTTTTCGAGTACACTAGTCAATT 57.118 30.769 0.00 0.00 0.00 2.32
71 72 8.882415 TCTTTTTCGAGTACACTAGTCAATTT 57.118 30.769 0.00 0.00 0.00 1.82
73 74 8.428186 TTTTTCGAGTACACTAGTCAATTTGT 57.572 30.769 0.00 0.00 0.00 2.83
74 75 7.402811 TTTCGAGTACACTAGTCAATTTGTG 57.597 36.000 0.00 0.00 36.59 3.33
75 76 4.921515 TCGAGTACACTAGTCAATTTGTGC 59.078 41.667 0.00 0.00 34.14 4.57
77 78 4.628074 AGTACACTAGTCAATTTGTGCGT 58.372 39.130 0.00 0.00 34.14 5.24
78 79 3.878086 ACACTAGTCAATTTGTGCGTG 57.122 42.857 0.00 3.54 34.14 5.34
79 80 2.032030 ACACTAGTCAATTTGTGCGTGC 60.032 45.455 0.00 0.00 34.14 5.34
81 82 2.616376 ACTAGTCAATTTGTGCGTGCAA 59.384 40.909 0.00 0.00 0.00 4.08
82 83 2.798976 AGTCAATTTGTGCGTGCAAT 57.201 40.000 0.00 0.00 0.00 3.56
83 84 2.396601 AGTCAATTTGTGCGTGCAATG 58.603 42.857 0.00 0.00 0.00 2.82
97 98 3.650070 TGCAATGCACGTTAATTTGGA 57.350 38.095 2.72 0.00 31.71 3.53
98 99 3.982475 TGCAATGCACGTTAATTTGGAA 58.018 36.364 2.72 0.00 31.71 3.53
100 101 3.987220 GCAATGCACGTTAATTTGGAAGT 59.013 39.130 0.00 0.00 0.00 3.01
102 103 5.804979 GCAATGCACGTTAATTTGGAAGTAT 59.195 36.000 0.00 0.00 0.00 2.12
103 104 6.970043 GCAATGCACGTTAATTTGGAAGTATA 59.030 34.615 0.00 0.00 0.00 1.47
105 106 9.515020 CAATGCACGTTAATTTGGAAGTATATT 57.485 29.630 0.00 0.00 0.00 1.28
116 117 5.922739 TGGAAGTATATTAAGTGCATGCG 57.077 39.130 14.09 0.00 0.00 4.73
117 118 4.754618 TGGAAGTATATTAAGTGCATGCGG 59.245 41.667 14.09 0.00 0.00 5.69
118 119 4.994852 GGAAGTATATTAAGTGCATGCGGA 59.005 41.667 14.09 0.00 0.00 5.54
119 120 5.643777 GGAAGTATATTAAGTGCATGCGGAT 59.356 40.000 14.09 3.59 0.00 4.18
120 121 6.816640 GGAAGTATATTAAGTGCATGCGGATA 59.183 38.462 14.09 6.94 0.00 2.59
121 122 7.495934 GGAAGTATATTAAGTGCATGCGGATAT 59.504 37.037 14.09 13.06 0.00 1.63
122 123 8.792830 AAGTATATTAAGTGCATGCGGATATT 57.207 30.769 14.09 5.62 0.00 1.28
123 124 9.884636 AAGTATATTAAGTGCATGCGGATATTA 57.115 29.630 14.09 4.65 0.00 0.98
124 125 9.884636 AGTATATTAAGTGCATGCGGATATTAA 57.115 29.630 14.09 12.83 0.00 1.40
126 127 8.792830 ATATTAAGTGCATGCGGATATTAAGT 57.207 30.769 14.09 4.58 0.00 2.24
127 128 9.884636 ATATTAAGTGCATGCGGATATTAAGTA 57.115 29.630 14.09 8.17 0.00 2.24
128 129 7.652300 TTAAGTGCATGCGGATATTAAGTAG 57.348 36.000 14.09 0.00 0.00 2.57
129 130 5.468540 AGTGCATGCGGATATTAAGTAGA 57.531 39.130 14.09 0.00 0.00 2.59
131 132 6.467677 AGTGCATGCGGATATTAAGTAGAAT 58.532 36.000 14.09 0.00 0.00 2.40
132 133 7.611770 AGTGCATGCGGATATTAAGTAGAATA 58.388 34.615 14.09 0.00 0.00 1.75
133 134 8.260818 AGTGCATGCGGATATTAAGTAGAATAT 58.739 33.333 14.09 0.00 35.21 1.28
134 135 8.883731 GTGCATGCGGATATTAAGTAGAATATT 58.116 33.333 14.09 0.00 33.14 1.28
186 187 9.988815 ATTATATTTGGCATAAAATTAACCGCA 57.011 25.926 0.00 0.00 32.16 5.69
187 188 7.707774 ATATTTGGCATAAAATTAACCGCAC 57.292 32.000 0.00 0.00 32.16 5.34
188 189 3.138205 TGGCATAAAATTAACCGCACG 57.862 42.857 0.00 0.00 0.00 5.34
191 192 3.242804 GGCATAAAATTAACCGCACGCTA 60.243 43.478 0.00 0.00 0.00 4.26
192 193 4.344448 GCATAAAATTAACCGCACGCTAA 58.656 39.130 0.00 0.00 0.00 3.09
193 194 4.794246 GCATAAAATTAACCGCACGCTAAA 59.206 37.500 0.00 0.00 0.00 1.85
194 195 5.275556 GCATAAAATTAACCGCACGCTAAAC 60.276 40.000 0.00 0.00 0.00 2.01
205 206 3.345087 CGCTAAACGTGTTGAGCAC 57.655 52.632 19.45 0.00 45.37 4.40
208 209 1.864711 GCTAAACGTGTTGAGCACTCA 59.135 47.619 15.69 0.00 44.65 3.41
209 210 2.286833 GCTAAACGTGTTGAGCACTCAA 59.713 45.455 15.69 8.99 44.65 3.02
220 221 5.929697 TTGAGCACTCAACATTGAAGTAG 57.070 39.130 8.99 0.00 43.90 2.57
221 222 4.960938 TGAGCACTCAACATTGAAGTAGT 58.039 39.130 0.00 0.00 36.64 2.73
223 224 5.220710 AGCACTCAACATTGAAGTAGTCT 57.779 39.130 0.00 0.00 36.64 3.24
225 226 6.759272 AGCACTCAACATTGAAGTAGTCTAA 58.241 36.000 0.00 0.00 36.64 2.10
227 228 6.647067 GCACTCAACATTGAAGTAGTCTAAGT 59.353 38.462 0.00 0.00 36.64 2.24
228 229 7.171678 GCACTCAACATTGAAGTAGTCTAAGTT 59.828 37.037 0.00 0.00 36.64 2.66
229 230 8.491152 CACTCAACATTGAAGTAGTCTAAGTTG 58.509 37.037 0.00 0.00 36.64 3.16
230 231 8.204836 ACTCAACATTGAAGTAGTCTAAGTTGT 58.795 33.333 0.00 0.00 36.64 3.32
231 232 8.958119 TCAACATTGAAGTAGTCTAAGTTGTT 57.042 30.769 0.00 0.00 35.31 2.83
232 233 8.826710 TCAACATTGAAGTAGTCTAAGTTGTTG 58.173 33.333 0.00 0.00 35.31 3.33
233 234 7.730364 ACATTGAAGTAGTCTAAGTTGTTGG 57.270 36.000 0.00 0.00 0.00 3.77
234 235 7.506114 ACATTGAAGTAGTCTAAGTTGTTGGA 58.494 34.615 0.00 0.00 0.00 3.53
235 236 8.157476 ACATTGAAGTAGTCTAAGTTGTTGGAT 58.843 33.333 0.00 0.00 0.00 3.41
237 238 7.962964 TGAAGTAGTCTAAGTTGTTGGATTG 57.037 36.000 0.00 0.00 0.00 2.67
238 239 7.732025 TGAAGTAGTCTAAGTTGTTGGATTGA 58.268 34.615 0.00 0.00 0.00 2.57
239 240 7.656137 TGAAGTAGTCTAAGTTGTTGGATTGAC 59.344 37.037 0.00 0.00 0.00 3.18
240 241 7.062749 AGTAGTCTAAGTTGTTGGATTGACA 57.937 36.000 0.00 0.00 0.00 3.58
241 242 7.680730 AGTAGTCTAAGTTGTTGGATTGACAT 58.319 34.615 0.00 0.00 0.00 3.06
242 243 6.808008 AGTCTAAGTTGTTGGATTGACATG 57.192 37.500 0.00 0.00 0.00 3.21
243 244 6.533730 AGTCTAAGTTGTTGGATTGACATGA 58.466 36.000 0.00 0.00 0.00 3.07
244 245 7.170965 AGTCTAAGTTGTTGGATTGACATGAT 58.829 34.615 0.00 0.00 0.00 2.45
245 246 7.667219 AGTCTAAGTTGTTGGATTGACATGATT 59.333 33.333 0.00 0.00 0.00 2.57
246 247 8.299570 GTCTAAGTTGTTGGATTGACATGATTT 58.700 33.333 0.00 0.00 0.00 2.17
247 248 8.298854 TCTAAGTTGTTGGATTGACATGATTTG 58.701 33.333 0.00 0.00 0.00 2.32
248 249 6.653526 AGTTGTTGGATTGACATGATTTGA 57.346 33.333 0.00 0.00 0.00 2.69
249 250 7.235935 AGTTGTTGGATTGACATGATTTGAT 57.764 32.000 0.00 0.00 0.00 2.57
250 251 8.352137 AGTTGTTGGATTGACATGATTTGATA 57.648 30.769 0.00 0.00 0.00 2.15
251 252 8.464404 AGTTGTTGGATTGACATGATTTGATAG 58.536 33.333 0.00 0.00 0.00 2.08
252 253 6.798482 TGTTGGATTGACATGATTTGATAGC 58.202 36.000 0.00 0.00 0.00 2.97
253 254 6.604396 TGTTGGATTGACATGATTTGATAGCT 59.396 34.615 0.00 0.00 0.00 3.32
254 255 7.774625 TGTTGGATTGACATGATTTGATAGCTA 59.225 33.333 0.00 0.00 0.00 3.32
255 256 8.623903 GTTGGATTGACATGATTTGATAGCTAA 58.376 33.333 0.00 0.00 0.00 3.09
256 257 8.387190 TGGATTGACATGATTTGATAGCTAAG 57.613 34.615 0.00 0.00 0.00 2.18
257 258 8.212995 TGGATTGACATGATTTGATAGCTAAGA 58.787 33.333 0.00 0.00 0.00 2.10
258 259 9.228949 GGATTGACATGATTTGATAGCTAAGAT 57.771 33.333 0.00 0.00 0.00 2.40
271 272 8.783833 TGATAGCTAAGATTAATTGATCTGCC 57.216 34.615 13.03 5.49 36.53 4.85
272 273 7.826252 TGATAGCTAAGATTAATTGATCTGCCC 59.174 37.037 13.03 5.18 36.53 5.36
274 275 5.074239 AGCTAAGATTAATTGATCTGCCCCT 59.926 40.000 13.03 5.59 36.53 4.79
275 276 5.772169 GCTAAGATTAATTGATCTGCCCCTT 59.228 40.000 13.03 0.09 36.53 3.95
278 279 5.769835 AGATTAATTGATCTGCCCCTTTGA 58.230 37.500 11.66 0.00 35.13 2.69
279 280 6.197168 AGATTAATTGATCTGCCCCTTTGAA 58.803 36.000 11.66 0.00 35.13 2.69
280 281 6.842807 AGATTAATTGATCTGCCCCTTTGAAT 59.157 34.615 11.66 0.00 35.13 2.57
282 283 3.744940 TTGATCTGCCCCTTTGAATCT 57.255 42.857 0.00 0.00 0.00 2.40
283 284 3.744940 TGATCTGCCCCTTTGAATCTT 57.255 42.857 0.00 0.00 0.00 2.40
284 285 4.051661 TGATCTGCCCCTTTGAATCTTT 57.948 40.909 0.00 0.00 0.00 2.52
285 286 4.419282 TGATCTGCCCCTTTGAATCTTTT 58.581 39.130 0.00 0.00 0.00 2.27
286 287 4.840115 TGATCTGCCCCTTTGAATCTTTTT 59.160 37.500 0.00 0.00 0.00 1.94
287 288 6.015918 TGATCTGCCCCTTTGAATCTTTTTA 58.984 36.000 0.00 0.00 0.00 1.52
288 289 6.669154 TGATCTGCCCCTTTGAATCTTTTTAT 59.331 34.615 0.00 0.00 0.00 1.40
289 290 7.838696 TGATCTGCCCCTTTGAATCTTTTTATA 59.161 33.333 0.00 0.00 0.00 0.98
290 291 8.788238 ATCTGCCCCTTTGAATCTTTTTATAT 57.212 30.769 0.00 0.00 0.00 0.86
293 294 8.372877 TGCCCCTTTGAATCTTTTTATATTGA 57.627 30.769 0.00 0.00 0.00 2.57
294 295 8.991275 TGCCCCTTTGAATCTTTTTATATTGAT 58.009 29.630 0.00 0.00 0.00 2.57
323 324 5.640158 ATAGATATAGACTAGAGGGCGCT 57.360 43.478 7.64 1.38 0.00 5.92
324 325 6.750660 ATAGATATAGACTAGAGGGCGCTA 57.249 41.667 7.64 0.00 0.00 4.26
325 326 4.773013 AGATATAGACTAGAGGGCGCTAC 58.227 47.826 7.64 0.00 0.00 3.58
326 327 2.953284 ATAGACTAGAGGGCGCTACA 57.047 50.000 7.64 0.00 0.00 2.74
327 328 2.953284 TAGACTAGAGGGCGCTACAT 57.047 50.000 7.64 0.00 0.00 2.29
329 330 1.144093 AGACTAGAGGGCGCTACATCT 59.856 52.381 7.64 6.72 0.00 2.90
330 331 2.372504 AGACTAGAGGGCGCTACATCTA 59.627 50.000 7.64 7.63 0.00 1.98
331 332 3.009695 AGACTAGAGGGCGCTACATCTAT 59.990 47.826 7.64 0.00 0.00 1.98
332 333 3.349022 ACTAGAGGGCGCTACATCTATC 58.651 50.000 7.64 0.00 0.00 2.08
333 334 2.595750 AGAGGGCGCTACATCTATCT 57.404 50.000 7.64 0.00 0.00 1.98
334 335 3.722908 AGAGGGCGCTACATCTATCTA 57.277 47.619 7.64 0.00 0.00 1.98
335 336 3.349022 AGAGGGCGCTACATCTATCTAC 58.651 50.000 7.64 0.00 0.00 2.59
336 337 3.082548 GAGGGCGCTACATCTATCTACA 58.917 50.000 7.64 0.00 0.00 2.74
338 339 3.445450 AGGGCGCTACATCTATCTACATG 59.555 47.826 7.64 0.00 0.00 3.21
339 340 3.193691 GGGCGCTACATCTATCTACATGT 59.806 47.826 7.64 2.69 37.08 3.21
340 341 4.398358 GGGCGCTACATCTATCTACATGTA 59.602 45.833 7.64 5.25 34.92 2.29
342 343 6.405953 GGGCGCTACATCTATCTACATGTAAT 60.406 42.308 7.64 6.43 35.53 1.89
360 361 8.906636 CATGTAATGTAGTGTAAAGTAGTCGT 57.093 34.615 0.00 0.00 40.20 4.34
363 364 8.446273 TGTAATGTAGTGTAAAGTAGTCGTCTC 58.554 37.037 0.00 0.00 0.00 3.36
364 365 5.869753 TGTAGTGTAAAGTAGTCGTCTCC 57.130 43.478 0.00 0.00 0.00 3.71
365 366 5.308014 TGTAGTGTAAAGTAGTCGTCTCCA 58.692 41.667 0.00 0.00 0.00 3.86
366 367 5.942236 TGTAGTGTAAAGTAGTCGTCTCCAT 59.058 40.000 0.00 0.00 0.00 3.41
367 368 5.979288 AGTGTAAAGTAGTCGTCTCCATT 57.021 39.130 0.00 0.00 0.00 3.16
368 369 5.710984 AGTGTAAAGTAGTCGTCTCCATTG 58.289 41.667 0.00 0.00 0.00 2.82
369 370 5.475909 AGTGTAAAGTAGTCGTCTCCATTGA 59.524 40.000 0.00 0.00 0.00 2.57
371 372 5.475909 TGTAAAGTAGTCGTCTCCATTGACT 59.524 40.000 0.00 0.00 44.63 3.41
372 373 4.705337 AAGTAGTCGTCTCCATTGACTC 57.295 45.455 0.00 0.00 41.78 3.36
373 374 3.687125 AGTAGTCGTCTCCATTGACTCA 58.313 45.455 0.00 0.00 41.78 3.41
374 375 3.440872 AGTAGTCGTCTCCATTGACTCAC 59.559 47.826 0.00 0.00 41.78 3.51
375 376 1.546476 AGTCGTCTCCATTGACTCACC 59.454 52.381 0.00 0.00 38.55 4.02
376 377 0.895530 TCGTCTCCATTGACTCACCC 59.104 55.000 0.00 0.00 35.00 4.61
377 378 0.898320 CGTCTCCATTGACTCACCCT 59.102 55.000 0.00 0.00 35.00 4.34
378 379 2.100197 CGTCTCCATTGACTCACCCTA 58.900 52.381 0.00 0.00 35.00 3.53
379 380 2.695666 CGTCTCCATTGACTCACCCTAT 59.304 50.000 0.00 0.00 35.00 2.57
380 381 3.889538 CGTCTCCATTGACTCACCCTATA 59.110 47.826 0.00 0.00 35.00 1.31
381 382 4.524714 CGTCTCCATTGACTCACCCTATAT 59.475 45.833 0.00 0.00 35.00 0.86
384 385 6.268847 GTCTCCATTGACTCACCCTATATCTT 59.731 42.308 0.00 0.00 34.39 2.40
385 386 7.451877 GTCTCCATTGACTCACCCTATATCTTA 59.548 40.741 0.00 0.00 34.39 2.10
386 387 7.671819 TCTCCATTGACTCACCCTATATCTTAG 59.328 40.741 0.00 0.00 0.00 2.18
387 388 7.535738 TCCATTGACTCACCCTATATCTTAGA 58.464 38.462 0.00 0.00 0.00 2.10
388 389 7.451877 TCCATTGACTCACCCTATATCTTAGAC 59.548 40.741 0.00 0.00 0.00 2.59
389 390 7.453126 CCATTGACTCACCCTATATCTTAGACT 59.547 40.741 0.00 0.00 0.00 3.24
391 392 5.770663 TGACTCACCCTATATCTTAGACTGC 59.229 44.000 0.00 0.00 0.00 4.40
393 394 5.772672 ACTCACCCTATATCTTAGACTGCAG 59.227 44.000 13.48 13.48 0.00 4.41
394 395 5.080337 TCACCCTATATCTTAGACTGCAGG 58.920 45.833 19.93 0.00 0.00 4.85
395 396 4.835615 CACCCTATATCTTAGACTGCAGGT 59.164 45.833 19.93 7.42 0.00 4.00
396 397 5.305644 CACCCTATATCTTAGACTGCAGGTT 59.694 44.000 19.93 8.10 0.00 3.50
397 398 5.540719 ACCCTATATCTTAGACTGCAGGTTC 59.459 44.000 19.93 7.50 0.00 3.62
398 399 5.336055 CCCTATATCTTAGACTGCAGGTTCG 60.336 48.000 19.93 2.30 0.00 3.95
399 400 5.241949 CCTATATCTTAGACTGCAGGTTCGT 59.758 44.000 19.93 0.00 0.00 3.85
400 401 3.963428 ATCTTAGACTGCAGGTTCGTT 57.037 42.857 19.93 0.00 0.00 3.85
401 402 3.026630 TCTTAGACTGCAGGTTCGTTG 57.973 47.619 19.93 2.02 0.00 4.10
402 403 2.069273 CTTAGACTGCAGGTTCGTTGG 58.931 52.381 19.93 0.00 0.00 3.77
405 406 0.307760 GACTGCAGGTTCGTTGGTTG 59.692 55.000 19.93 0.00 0.00 3.77
406 407 1.101049 ACTGCAGGTTCGTTGGTTGG 61.101 55.000 19.93 0.00 0.00 3.77
407 408 1.077357 TGCAGGTTCGTTGGTTGGT 60.077 52.632 0.00 0.00 0.00 3.67
408 409 0.681564 TGCAGGTTCGTTGGTTGGTT 60.682 50.000 0.00 0.00 0.00 3.67
409 410 0.030235 GCAGGTTCGTTGGTTGGTTC 59.970 55.000 0.00 0.00 0.00 3.62
411 412 0.107557 AGGTTCGTTGGTTGGTTCGT 60.108 50.000 0.00 0.00 0.00 3.85
412 413 0.305617 GGTTCGTTGGTTGGTTCGTC 59.694 55.000 0.00 0.00 0.00 4.20
413 414 0.042794 GTTCGTTGGTTGGTTCGTCG 60.043 55.000 0.00 0.00 0.00 5.12
414 415 0.459934 TTCGTTGGTTGGTTCGTCGT 60.460 50.000 0.00 0.00 0.00 4.34
415 416 0.383590 TCGTTGGTTGGTTCGTCGTA 59.616 50.000 0.00 0.00 0.00 3.43
417 418 1.856802 GTTGGTTGGTTCGTCGTACT 58.143 50.000 1.92 0.00 0.00 2.73
419 420 1.321474 TGGTTGGTTCGTCGTACTCT 58.679 50.000 1.92 0.00 0.00 3.24
420 421 1.267806 TGGTTGGTTCGTCGTACTCTC 59.732 52.381 1.92 0.00 0.00 3.20
422 423 0.110056 TTGGTTCGTCGTACTCTCGC 60.110 55.000 1.92 0.00 0.00 5.03
423 424 1.579626 GGTTCGTCGTACTCTCGCG 60.580 63.158 0.00 0.00 34.07 5.87
424 425 1.131420 GTTCGTCGTACTCTCGCGT 59.869 57.895 5.77 0.00 34.28 6.01
425 426 0.366871 GTTCGTCGTACTCTCGCGTA 59.633 55.000 5.77 0.00 34.28 4.42
426 427 1.067693 TTCGTCGTACTCTCGCGTAA 58.932 50.000 5.77 0.00 34.28 3.18
427 428 1.280982 TCGTCGTACTCTCGCGTAAT 58.719 50.000 5.77 0.00 34.28 1.89
428 429 1.005662 TCGTCGTACTCTCGCGTAATG 60.006 52.381 5.77 0.00 34.28 1.90
429 430 1.267235 CGTCGTACTCTCGCGTAATGT 60.267 52.381 5.77 4.03 0.00 2.71
431 432 0.838229 CGTACTCTCGCGTAATGTGC 59.162 55.000 5.77 4.30 0.00 4.57
439 440 3.850207 GCGTAATGTGCGTGTACTG 57.150 52.632 0.00 0.00 0.00 2.74
441 442 1.924524 GCGTAATGTGCGTGTACTGAT 59.075 47.619 0.00 0.00 0.00 2.90
442 443 3.110358 GCGTAATGTGCGTGTACTGATA 58.890 45.455 0.00 0.00 0.00 2.15
443 444 3.179795 GCGTAATGTGCGTGTACTGATAG 59.820 47.826 0.00 0.00 0.00 2.08
444 445 3.179795 CGTAATGTGCGTGTACTGATAGC 59.820 47.826 0.00 0.00 0.00 2.97
445 446 2.959507 ATGTGCGTGTACTGATAGCA 57.040 45.000 0.00 0.00 35.27 3.49
448 449 2.278026 TGCGTGTACTGATAGCACTG 57.722 50.000 0.00 0.00 32.43 3.66
449 450 1.816224 TGCGTGTACTGATAGCACTGA 59.184 47.619 0.00 0.00 32.43 3.41
450 451 2.427095 TGCGTGTACTGATAGCACTGAT 59.573 45.455 0.00 0.00 32.43 2.90
452 453 3.489229 GCGTGTACTGATAGCACTGATCA 60.489 47.826 0.00 0.00 0.00 2.92
453 454 4.794329 GCGTGTACTGATAGCACTGATCAT 60.794 45.833 0.00 0.00 32.96 2.45
454 455 5.562890 GCGTGTACTGATAGCACTGATCATA 60.563 44.000 0.00 0.00 32.96 2.15
455 456 6.438763 CGTGTACTGATAGCACTGATCATAA 58.561 40.000 0.00 0.00 32.96 1.90
456 457 7.087007 CGTGTACTGATAGCACTGATCATAAT 58.913 38.462 0.00 0.00 32.96 1.28
457 458 7.596621 CGTGTACTGATAGCACTGATCATAATT 59.403 37.037 0.00 0.00 32.96 1.40
514 515 1.084370 AGTCGCGCCAGCTGATTAAC 61.084 55.000 17.39 6.69 42.32 2.01
515 516 1.084370 GTCGCGCCAGCTGATTAACT 61.084 55.000 17.39 0.00 42.32 2.24
518 519 1.135689 CGCGCCAGCTGATTAACTTTT 60.136 47.619 17.39 0.00 42.32 2.27
522 523 3.612479 CGCCAGCTGATTAACTTTTTGCT 60.612 43.478 17.39 0.00 0.00 3.91
541 542 0.389296 TGTACGGCCAACACATCTCG 60.389 55.000 2.24 0.00 0.00 4.04
542 543 1.082117 GTACGGCCAACACATCTCGG 61.082 60.000 2.24 0.00 0.00 4.63
545 546 1.220749 GGCCAACACATCTCGGCTA 59.779 57.895 0.00 0.00 44.27 3.93
546 547 0.811616 GGCCAACACATCTCGGCTAG 60.812 60.000 0.00 0.00 44.27 3.42
547 548 1.432270 GCCAACACATCTCGGCTAGC 61.432 60.000 6.04 6.04 41.50 3.42
549 550 1.002366 CAACACATCTCGGCTAGCAC 58.998 55.000 18.24 5.06 0.00 4.40
551 552 1.313091 ACACATCTCGGCTAGCACGA 61.313 55.000 21.64 21.64 38.79 4.35
552 553 0.867753 CACATCTCGGCTAGCACGAC 60.868 60.000 18.24 0.00 36.25 4.34
555 556 0.748367 ATCTCGGCTAGCACGACTGA 60.748 55.000 18.24 16.13 36.25 3.41
556 557 0.748367 TCTCGGCTAGCACGACTGAT 60.748 55.000 18.24 0.00 36.25 2.90
557 558 0.593518 CTCGGCTAGCACGACTGATG 60.594 60.000 18.24 7.15 36.25 3.07
561 562 1.517361 CTAGCACGACTGATGCCCA 59.483 57.895 0.00 0.00 44.53 5.36
563 564 2.578163 TAGCACGACTGATGCCCAGC 62.578 60.000 3.43 0.00 46.81 4.85
564 565 2.267006 CACGACTGATGCCCAGCT 59.733 61.111 3.43 0.00 46.81 4.24
566 567 1.986757 ACGACTGATGCCCAGCTCT 60.987 57.895 3.43 0.00 46.81 4.09
567 568 1.521010 CGACTGATGCCCAGCTCTG 60.521 63.158 3.43 0.00 46.81 3.35
578 592 2.919856 AGCTCTGCCGTGTCACCT 60.920 61.111 0.00 0.00 0.00 4.00
600 614 0.460284 ACTCGCCGTTCCTATGCAAG 60.460 55.000 0.00 0.00 0.00 4.01
604 618 1.792949 CGCCGTTCCTATGCAAGATAC 59.207 52.381 0.00 0.00 0.00 2.24
693 740 1.153353 CCGTAGTTGCACCAAACGAT 58.847 50.000 10.08 0.00 31.76 3.73
737 784 4.922471 AGCTAGGACGAAATTACTCCTC 57.078 45.455 0.00 0.00 35.87 3.71
742 789 6.370718 GCTAGGACGAAATTACTCCTCAAAAA 59.629 38.462 0.00 0.00 35.87 1.94
743 790 6.555812 AGGACGAAATTACTCCTCAAAAAC 57.444 37.500 0.00 0.00 27.04 2.43
744 791 6.059484 AGGACGAAATTACTCCTCAAAAACA 58.941 36.000 0.00 0.00 27.04 2.83
745 792 6.715264 AGGACGAAATTACTCCTCAAAAACAT 59.285 34.615 0.00 0.00 27.04 2.71
747 794 8.674607 GGACGAAATTACTCCTCAAAAACATAT 58.325 33.333 0.00 0.00 0.00 1.78
784 841 6.151985 ACAATGAAATTTATCGTGCCACCTTA 59.848 34.615 0.00 0.00 31.22 2.69
822 879 3.267233 TGGCTGGGGGCATCAGTT 61.267 61.111 7.88 0.00 43.20 3.16
823 880 1.928046 TGGCTGGGGGCATCAGTTA 60.928 57.895 7.88 0.00 43.20 2.24
824 881 1.152881 GGCTGGGGGCATCAGTTAG 60.153 63.158 7.88 0.00 44.01 2.34
825 882 1.609783 GCTGGGGGCATCAGTTAGT 59.390 57.895 7.88 0.00 41.35 2.24
834 891 2.355108 GGCATCAGTTAGTTGGCAGAGA 60.355 50.000 0.00 0.00 40.96 3.10
837 894 3.667497 TCAGTTAGTTGGCAGAGACAG 57.333 47.619 0.00 0.00 0.00 3.51
863 925 1.964552 AGAGCTATGTGCATGGAAGC 58.035 50.000 1.42 1.42 45.94 3.86
864 926 1.489649 AGAGCTATGTGCATGGAAGCT 59.510 47.619 11.23 11.23 45.82 3.74
941 1014 1.811359 CTCAGCTCCAAAGAAAGCCTG 59.189 52.381 0.00 0.00 39.39 4.85
1108 1194 1.202177 GCAATGACAATGGCTACGGTG 60.202 52.381 0.00 0.00 29.11 4.94
1167 1253 3.390639 AGCTGGATCCCAAGTTCTATGAG 59.609 47.826 9.90 0.00 30.80 2.90
1343 1470 1.000843 TGATCACGTCAAGAGGTGGTG 59.999 52.381 19.17 4.25 44.62 4.17
1363 1490 3.179795 GTGCGACGACACATATGTATGTC 59.820 47.826 8.32 14.49 44.57 3.06
1365 1492 3.664486 GCGACGACACATATGTATGTCTC 59.336 47.826 21.89 15.37 44.57 3.36
1380 3271 1.076412 TCTCTCTCAGGGCTGCGAT 60.076 57.895 0.00 0.00 0.00 4.58
1422 3313 3.411351 CCGGCGACCAACTTCACG 61.411 66.667 9.30 0.00 0.00 4.35
1461 3352 1.299620 CAACGTCAACTCCGTCCGT 60.300 57.895 0.00 0.00 37.61 4.69
1578 3469 1.000060 GGCACAGTTCTGGTACGTACA 60.000 52.381 26.02 11.97 0.00 2.90
1579 3470 2.325761 GCACAGTTCTGGTACGTACAG 58.674 52.381 26.02 19.76 37.30 2.74
1594 3518 0.108377 TACAGTACGTGCCTGCATGG 60.108 55.000 15.24 4.23 37.27 3.66
1969 3926 4.918129 TTCGCCGCCGATCTACGC 62.918 66.667 0.00 0.00 43.97 4.42
2068 4025 0.546027 ACGCCTACTACCCCAACCTT 60.546 55.000 0.00 0.00 0.00 3.50
2299 4256 2.490903 CCCAGAATTTCAGGTTGCAGAG 59.509 50.000 7.03 0.00 0.00 3.35
2331 4288 1.949525 CGGGGAAGCAAGGAATGTATG 59.050 52.381 0.00 0.00 0.00 2.39
2334 4291 3.131046 GGGGAAGCAAGGAATGTATGTTG 59.869 47.826 0.00 0.00 0.00 3.33
2406 4363 3.644884 AAGTTCACTGTACACCGAGAG 57.355 47.619 0.00 0.00 0.00 3.20
2422 4379 5.696724 CACCGAGAGTTTTCTGTTATCAACT 59.303 40.000 0.00 0.00 32.53 3.16
2450 4409 5.250235 TGTTACGTTTTGGCAGAATTGAA 57.750 34.783 0.00 0.00 0.00 2.69
2458 4417 6.346040 CGTTTTGGCAGAATTGAATTCAGTTC 60.346 38.462 27.41 27.41 41.71 3.01
2462 4421 6.392354 TGGCAGAATTGAATTCAGTTCATTC 58.608 36.000 32.61 25.11 45.77 2.67
2467 4426 8.795341 CAGAATTGAATTCAGTTCATTCGATTG 58.205 33.333 32.61 21.41 45.77 2.67
2477 4436 9.695526 TTCAGTTCATTCGATTGAATTTCAAAT 57.304 25.926 21.72 2.51 42.14 2.32
2489 4448 7.692908 TTGAATTTCAAATTTCGGTTCTGAC 57.307 32.000 9.36 0.00 32.71 3.51
2632 4591 9.210329 TCTAACAACGAGTCTAAATTTTATGCA 57.790 29.630 0.00 0.00 0.00 3.96
2830 4791 1.333619 GTGTTTGCTAGTGGGTGTGTG 59.666 52.381 0.00 0.00 0.00 3.82
3152 5151 8.613922 TTAGCCATTATCCATCATCTATCAGA 57.386 34.615 0.00 0.00 0.00 3.27
3272 5272 8.436778 AGTATGTGCACCAAATATTAGGTATGA 58.563 33.333 15.69 0.00 36.07 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.639094 ACATGCATAGTACTCCCTCTGTC 59.361 47.826 0.00 0.00 0.00 3.51
3 4 4.584743 TGTACATGCATAGTACTCCCTCTG 59.415 45.833 25.83 7.11 41.76 3.35
4 5 4.585162 GTGTACATGCATAGTACTCCCTCT 59.415 45.833 25.83 0.00 41.76 3.69
5 6 4.341235 TGTGTACATGCATAGTACTCCCTC 59.659 45.833 25.83 16.78 41.76 4.30
9 10 7.260558 TCTAGTGTGTACATGCATAGTACTC 57.739 40.000 25.83 23.64 41.76 2.59
10 11 6.263392 CCTCTAGTGTGTACATGCATAGTACT 59.737 42.308 25.83 16.98 41.76 2.73
12 13 5.535030 CCCTCTAGTGTGTACATGCATAGTA 59.465 44.000 0.00 1.75 0.00 1.82
13 14 4.342378 CCCTCTAGTGTGTACATGCATAGT 59.658 45.833 0.00 2.80 0.00 2.12
15 16 3.069586 GCCCTCTAGTGTGTACATGCATA 59.930 47.826 0.00 0.00 0.00 3.14
17 18 1.207089 GCCCTCTAGTGTGTACATGCA 59.793 52.381 0.00 0.00 0.00 3.96
18 19 1.207089 TGCCCTCTAGTGTGTACATGC 59.793 52.381 0.00 0.00 0.00 4.06
19 20 2.497675 AGTGCCCTCTAGTGTGTACATG 59.502 50.000 0.00 0.00 0.00 3.21
20 21 2.821437 AGTGCCCTCTAGTGTGTACAT 58.179 47.619 0.00 0.00 0.00 2.29
21 22 2.304221 AGTGCCCTCTAGTGTGTACA 57.696 50.000 0.00 0.00 0.00 2.90
23 24 3.444792 TGTAGTGCCCTCTAGTGTGTA 57.555 47.619 0.00 0.00 0.00 2.90
24 25 2.304221 TGTAGTGCCCTCTAGTGTGT 57.696 50.000 0.00 0.00 0.00 3.72
25 26 3.895232 AATGTAGTGCCCTCTAGTGTG 57.105 47.619 0.00 0.00 0.00 3.82
26 27 4.097418 AGAAATGTAGTGCCCTCTAGTGT 58.903 43.478 0.00 0.00 0.00 3.55
27 28 4.744795 AGAAATGTAGTGCCCTCTAGTG 57.255 45.455 0.00 0.00 0.00 2.74
28 29 5.763876 AAAGAAATGTAGTGCCCTCTAGT 57.236 39.130 0.00 0.00 0.00 2.57
30 31 5.642063 CGAAAAAGAAATGTAGTGCCCTCTA 59.358 40.000 0.00 0.00 0.00 2.43
31 32 4.455877 CGAAAAAGAAATGTAGTGCCCTCT 59.544 41.667 0.00 0.00 0.00 3.69
32 33 4.454504 TCGAAAAAGAAATGTAGTGCCCTC 59.545 41.667 0.00 0.00 0.00 4.30
33 34 4.394729 TCGAAAAAGAAATGTAGTGCCCT 58.605 39.130 0.00 0.00 0.00 5.19
36 37 6.790825 GTGTACTCGAAAAAGAAATGTAGTGC 59.209 38.462 0.00 0.00 0.00 4.40
38 39 9.408069 CTAGTGTACTCGAAAAAGAAATGTAGT 57.592 33.333 0.00 0.00 0.00 2.73
39 40 9.408069 ACTAGTGTACTCGAAAAAGAAATGTAG 57.592 33.333 0.00 0.00 0.00 2.74
40 41 9.403110 GACTAGTGTACTCGAAAAAGAAATGTA 57.597 33.333 0.00 0.00 0.00 2.29
41 42 7.924412 TGACTAGTGTACTCGAAAAAGAAATGT 59.076 33.333 0.00 0.00 0.00 2.71
42 43 8.294341 TGACTAGTGTACTCGAAAAAGAAATG 57.706 34.615 0.00 0.00 0.00 2.32
43 44 8.882415 TTGACTAGTGTACTCGAAAAAGAAAT 57.118 30.769 0.00 0.00 0.00 2.17
44 45 8.882415 ATTGACTAGTGTACTCGAAAAAGAAA 57.118 30.769 0.00 0.00 0.00 2.52
45 46 8.882415 AATTGACTAGTGTACTCGAAAAAGAA 57.118 30.769 0.00 0.00 0.00 2.52
48 49 8.332464 CACAAATTGACTAGTGTACTCGAAAAA 58.668 33.333 0.00 0.00 0.00 1.94
49 50 7.517734 GCACAAATTGACTAGTGTACTCGAAAA 60.518 37.037 0.00 0.00 34.59 2.29
50 51 6.073980 GCACAAATTGACTAGTGTACTCGAAA 60.074 38.462 0.00 0.00 34.59 3.46
51 52 5.404366 GCACAAATTGACTAGTGTACTCGAA 59.596 40.000 0.00 0.00 34.59 3.71
52 53 4.921515 GCACAAATTGACTAGTGTACTCGA 59.078 41.667 0.00 0.00 34.59 4.04
55 56 4.447724 CACGCACAAATTGACTAGTGTACT 59.552 41.667 0.00 0.00 34.59 2.73
56 57 4.698276 CACGCACAAATTGACTAGTGTAC 58.302 43.478 0.00 0.00 34.59 2.90
57 58 3.185594 GCACGCACAAATTGACTAGTGTA 59.814 43.478 0.00 0.00 34.59 2.90
59 60 2.032117 TGCACGCACAAATTGACTAGTG 60.032 45.455 0.00 5.74 35.19 2.74
60 61 2.217750 TGCACGCACAAATTGACTAGT 58.782 42.857 0.00 0.00 0.00 2.57
63 64 2.396601 CATTGCACGCACAAATTGACT 58.603 42.857 0.00 0.00 32.27 3.41
65 66 1.138337 GCATTGCACGCACAAATTGA 58.862 45.000 3.15 0.00 32.27 2.57
66 67 0.859882 TGCATTGCACGCACAAATTG 59.140 45.000 7.38 0.00 33.55 2.32
67 68 3.285838 TGCATTGCACGCACAAATT 57.714 42.105 7.38 0.00 33.55 1.82
77 78 3.650070 TCCAAATTAACGTGCATTGCA 57.350 38.095 7.38 7.38 35.60 4.08
78 79 3.987220 ACTTCCAAATTAACGTGCATTGC 59.013 39.130 0.46 0.46 0.00 3.56
79 80 9.515020 AATATACTTCCAAATTAACGTGCATTG 57.485 29.630 0.00 0.00 0.00 2.82
90 91 7.862372 CGCATGCACTTAATATACTTCCAAATT 59.138 33.333 19.57 0.00 0.00 1.82
91 92 7.362662 CGCATGCACTTAATATACTTCCAAAT 58.637 34.615 19.57 0.00 0.00 2.32
92 93 6.238621 CCGCATGCACTTAATATACTTCCAAA 60.239 38.462 19.57 0.00 0.00 3.28
93 94 5.238432 CCGCATGCACTTAATATACTTCCAA 59.762 40.000 19.57 0.00 0.00 3.53
94 95 4.754618 CCGCATGCACTTAATATACTTCCA 59.245 41.667 19.57 0.00 0.00 3.53
95 96 4.994852 TCCGCATGCACTTAATATACTTCC 59.005 41.667 19.57 0.00 0.00 3.46
97 98 8.792830 AATATCCGCATGCACTTAATATACTT 57.207 30.769 19.57 0.00 0.00 2.24
98 99 9.884636 TTAATATCCGCATGCACTTAATATACT 57.115 29.630 19.57 2.37 0.00 2.12
100 101 9.884636 ACTTAATATCCGCATGCACTTAATATA 57.115 29.630 19.57 4.53 0.00 0.86
102 103 9.366216 CTACTTAATATCCGCATGCACTTAATA 57.634 33.333 19.57 7.60 0.00 0.98
103 104 8.094548 TCTACTTAATATCCGCATGCACTTAAT 58.905 33.333 19.57 5.58 0.00 1.40
105 106 6.988522 TCTACTTAATATCCGCATGCACTTA 58.011 36.000 19.57 5.72 0.00 2.24
106 107 5.853936 TCTACTTAATATCCGCATGCACTT 58.146 37.500 19.57 3.39 0.00 3.16
108 109 6.727824 ATTCTACTTAATATCCGCATGCAC 57.272 37.500 19.57 0.00 0.00 4.57
160 161 9.988815 TGCGGTTAATTTTATGCCAAATATAAT 57.011 25.926 0.00 0.00 0.00 1.28
161 162 9.250624 GTGCGGTTAATTTTATGCCAAATATAA 57.749 29.630 0.00 0.00 0.00 0.98
162 163 7.591795 CGTGCGGTTAATTTTATGCCAAATATA 59.408 33.333 0.00 0.00 0.00 0.86
163 164 6.419413 CGTGCGGTTAATTTTATGCCAAATAT 59.581 34.615 0.00 0.00 0.00 1.28
165 166 4.564769 CGTGCGGTTAATTTTATGCCAAAT 59.435 37.500 0.00 0.00 0.00 2.32
167 168 3.502920 CGTGCGGTTAATTTTATGCCAA 58.497 40.909 0.00 0.00 0.00 4.52
168 169 2.732597 GCGTGCGGTTAATTTTATGCCA 60.733 45.455 0.00 0.00 0.00 4.92
172 173 5.023286 CGTTTAGCGTGCGGTTAATTTTAT 58.977 37.500 0.68 0.00 35.54 1.40
173 174 4.393074 CGTTTAGCGTGCGGTTAATTTTA 58.607 39.130 0.68 0.00 35.54 1.52
174 175 3.227948 CGTTTAGCGTGCGGTTAATTTT 58.772 40.909 0.68 0.00 35.54 1.82
175 176 2.841874 CGTTTAGCGTGCGGTTAATTT 58.158 42.857 0.68 0.00 35.54 1.82
187 188 3.345087 GTGCTCAACACGTTTAGCG 57.655 52.632 10.57 0.00 41.36 4.26
198 199 5.368145 ACTACTTCAATGTTGAGTGCTCAA 58.632 37.500 10.26 10.26 46.27 3.02
199 200 4.960938 ACTACTTCAATGTTGAGTGCTCA 58.039 39.130 0.00 0.00 38.61 4.26
200 201 5.233988 AGACTACTTCAATGTTGAGTGCTC 58.766 41.667 0.00 0.00 38.61 4.26
201 202 5.220710 AGACTACTTCAATGTTGAGTGCT 57.779 39.130 0.00 0.00 38.61 4.40
202 203 6.647067 ACTTAGACTACTTCAATGTTGAGTGC 59.353 38.462 0.00 0.00 38.61 4.40
203 204 8.491152 CAACTTAGACTACTTCAATGTTGAGTG 58.509 37.037 0.00 0.00 38.61 3.51
204 205 8.204836 ACAACTTAGACTACTTCAATGTTGAGT 58.795 33.333 0.00 0.64 38.61 3.41
205 206 8.594881 ACAACTTAGACTACTTCAATGTTGAG 57.405 34.615 0.00 0.00 38.61 3.02
208 209 7.990886 TCCAACAACTTAGACTACTTCAATGTT 59.009 33.333 0.00 0.00 0.00 2.71
209 210 7.506114 TCCAACAACTTAGACTACTTCAATGT 58.494 34.615 0.00 0.00 0.00 2.71
210 211 7.962964 TCCAACAACTTAGACTACTTCAATG 57.037 36.000 0.00 0.00 0.00 2.82
211 212 9.003658 CAATCCAACAACTTAGACTACTTCAAT 57.996 33.333 0.00 0.00 0.00 2.57
212 213 8.208224 TCAATCCAACAACTTAGACTACTTCAA 58.792 33.333 0.00 0.00 0.00 2.69
213 214 7.656137 GTCAATCCAACAACTTAGACTACTTCA 59.344 37.037 0.00 0.00 0.00 3.02
214 215 7.656137 TGTCAATCCAACAACTTAGACTACTTC 59.344 37.037 0.00 0.00 0.00 3.01
216 217 7.062749 TGTCAATCCAACAACTTAGACTACT 57.937 36.000 0.00 0.00 0.00 2.57
217 218 7.602644 TCATGTCAATCCAACAACTTAGACTAC 59.397 37.037 0.00 0.00 0.00 2.73
219 220 6.533730 TCATGTCAATCCAACAACTTAGACT 58.466 36.000 0.00 0.00 0.00 3.24
220 221 6.801539 TCATGTCAATCCAACAACTTAGAC 57.198 37.500 0.00 0.00 0.00 2.59
221 222 8.298854 CAAATCATGTCAATCCAACAACTTAGA 58.701 33.333 0.00 0.00 0.00 2.10
223 224 8.175925 TCAAATCATGTCAATCCAACAACTTA 57.824 30.769 0.00 0.00 0.00 2.24
225 226 6.653526 TCAAATCATGTCAATCCAACAACT 57.346 33.333 0.00 0.00 0.00 3.16
227 228 7.123098 AGCTATCAAATCATGTCAATCCAACAA 59.877 33.333 0.00 0.00 0.00 2.83
228 229 6.604396 AGCTATCAAATCATGTCAATCCAACA 59.396 34.615 0.00 0.00 0.00 3.33
229 230 7.035840 AGCTATCAAATCATGTCAATCCAAC 57.964 36.000 0.00 0.00 0.00 3.77
230 231 8.750515 TTAGCTATCAAATCATGTCAATCCAA 57.249 30.769 0.00 0.00 0.00 3.53
231 232 8.212995 TCTTAGCTATCAAATCATGTCAATCCA 58.787 33.333 0.00 0.00 0.00 3.41
232 233 8.613060 TCTTAGCTATCAAATCATGTCAATCC 57.387 34.615 0.00 0.00 0.00 3.01
245 246 9.224267 GGCAGATCAATTAATCTTAGCTATCAA 57.776 33.333 0.00 0.00 33.68 2.57
246 247 7.826252 GGGCAGATCAATTAATCTTAGCTATCA 59.174 37.037 0.00 0.00 33.68 2.15
247 248 7.281999 GGGGCAGATCAATTAATCTTAGCTATC 59.718 40.741 0.00 0.00 33.68 2.08
248 249 7.037008 AGGGGCAGATCAATTAATCTTAGCTAT 60.037 37.037 0.00 0.00 33.68 2.97
249 250 6.273260 AGGGGCAGATCAATTAATCTTAGCTA 59.727 38.462 0.00 0.00 33.68 3.32
250 251 5.074239 AGGGGCAGATCAATTAATCTTAGCT 59.926 40.000 0.00 0.00 33.68 3.32
251 252 5.320277 AGGGGCAGATCAATTAATCTTAGC 58.680 41.667 0.00 0.00 33.68 3.09
252 253 7.503566 TCAAAGGGGCAGATCAATTAATCTTAG 59.496 37.037 0.00 0.00 33.68 2.18
253 254 7.353525 TCAAAGGGGCAGATCAATTAATCTTA 58.646 34.615 0.00 0.00 33.68 2.10
254 255 6.197168 TCAAAGGGGCAGATCAATTAATCTT 58.803 36.000 0.00 0.00 33.68 2.40
255 256 5.769835 TCAAAGGGGCAGATCAATTAATCT 58.230 37.500 0.00 0.00 36.41 2.40
256 257 6.469782 TTCAAAGGGGCAGATCAATTAATC 57.530 37.500 0.00 0.00 0.00 1.75
257 258 6.842807 AGATTCAAAGGGGCAGATCAATTAAT 59.157 34.615 0.00 0.00 0.00 1.40
258 259 6.197168 AGATTCAAAGGGGCAGATCAATTAA 58.803 36.000 0.00 0.00 0.00 1.40
259 260 5.769835 AGATTCAAAGGGGCAGATCAATTA 58.230 37.500 0.00 0.00 0.00 1.40
260 261 4.617593 AGATTCAAAGGGGCAGATCAATT 58.382 39.130 0.00 0.00 0.00 2.32
261 262 4.261411 AGATTCAAAGGGGCAGATCAAT 57.739 40.909 0.00 0.00 0.00 2.57
262 263 3.744940 AGATTCAAAGGGGCAGATCAA 57.255 42.857 0.00 0.00 0.00 2.57
263 264 3.744940 AAGATTCAAAGGGGCAGATCA 57.255 42.857 0.00 0.00 0.00 2.92
265 266 8.788238 ATATAAAAAGATTCAAAGGGGCAGAT 57.212 30.769 0.00 0.00 0.00 2.90
266 267 8.477256 CAATATAAAAAGATTCAAAGGGGCAGA 58.523 33.333 0.00 0.00 0.00 4.26
267 268 8.477256 TCAATATAAAAAGATTCAAAGGGGCAG 58.523 33.333 0.00 0.00 0.00 4.85
268 269 8.372877 TCAATATAAAAAGATTCAAAGGGGCA 57.627 30.769 0.00 0.00 0.00 5.36
296 297 8.533657 GCGCCCTCTAGTCTATATCTATATCTA 58.466 40.741 0.00 0.00 0.00 1.98
297 298 7.236847 AGCGCCCTCTAGTCTATATCTATATCT 59.763 40.741 2.29 0.00 0.00 1.98
299 300 7.324388 AGCGCCCTCTAGTCTATATCTATAT 57.676 40.000 2.29 0.00 0.00 0.86
300 301 6.750660 AGCGCCCTCTAGTCTATATCTATA 57.249 41.667 2.29 0.00 0.00 1.31
302 303 5.424573 TGTAGCGCCCTCTAGTCTATATCTA 59.575 44.000 2.29 0.00 0.00 1.98
303 304 4.225492 TGTAGCGCCCTCTAGTCTATATCT 59.775 45.833 2.29 0.00 0.00 1.98
304 305 4.515361 TGTAGCGCCCTCTAGTCTATATC 58.485 47.826 2.29 0.00 0.00 1.63
305 306 4.571369 TGTAGCGCCCTCTAGTCTATAT 57.429 45.455 2.29 0.00 0.00 0.86
306 307 4.225492 AGATGTAGCGCCCTCTAGTCTATA 59.775 45.833 2.29 0.00 0.00 1.31
307 308 2.953284 TGTAGCGCCCTCTAGTCTAT 57.047 50.000 2.29 0.00 0.00 1.98
308 309 2.372504 AGATGTAGCGCCCTCTAGTCTA 59.627 50.000 2.29 0.00 0.00 2.59
309 310 1.144093 AGATGTAGCGCCCTCTAGTCT 59.856 52.381 2.29 0.00 0.00 3.24
310 311 1.611519 AGATGTAGCGCCCTCTAGTC 58.388 55.000 2.29 0.00 0.00 2.59
311 312 2.953284 TAGATGTAGCGCCCTCTAGT 57.047 50.000 2.29 0.00 0.00 2.57
312 313 3.616219 AGATAGATGTAGCGCCCTCTAG 58.384 50.000 2.29 0.00 0.00 2.43
313 314 3.722908 AGATAGATGTAGCGCCCTCTA 57.277 47.619 2.29 6.04 0.00 2.43
314 315 2.595750 AGATAGATGTAGCGCCCTCT 57.404 50.000 2.29 3.67 0.00 3.69
315 316 3.082548 TGTAGATAGATGTAGCGCCCTC 58.917 50.000 2.29 0.00 0.00 4.30
316 317 3.156288 TGTAGATAGATGTAGCGCCCT 57.844 47.619 2.29 0.00 0.00 5.19
317 318 3.193691 ACATGTAGATAGATGTAGCGCCC 59.806 47.826 2.29 0.00 38.27 6.13
318 319 4.442375 ACATGTAGATAGATGTAGCGCC 57.558 45.455 2.29 0.00 38.27 6.53
333 334 9.992910 CGACTACTTTACACTACATTACATGTA 57.007 33.333 0.08 0.08 44.38 2.29
334 335 8.517878 ACGACTACTTTACACTACATTACATGT 58.482 33.333 2.69 2.69 46.92 3.21
335 336 8.906636 ACGACTACTTTACACTACATTACATG 57.093 34.615 0.00 0.00 0.00 3.21
336 337 8.954350 AGACGACTACTTTACACTACATTACAT 58.046 33.333 0.00 0.00 0.00 2.29
338 339 7.907563 GGAGACGACTACTTTACACTACATTAC 59.092 40.741 0.00 0.00 0.00 1.89
339 340 7.607607 TGGAGACGACTACTTTACACTACATTA 59.392 37.037 0.00 0.00 0.00 1.90
340 341 6.432162 TGGAGACGACTACTTTACACTACATT 59.568 38.462 0.00 0.00 0.00 2.71
342 343 5.308014 TGGAGACGACTACTTTACACTACA 58.692 41.667 0.00 0.00 0.00 2.74
343 344 5.869753 TGGAGACGACTACTTTACACTAC 57.130 43.478 0.00 0.00 0.00 2.73
344 345 6.656270 TCAATGGAGACGACTACTTTACACTA 59.344 38.462 0.00 0.00 0.00 2.74
345 346 5.475909 TCAATGGAGACGACTACTTTACACT 59.524 40.000 0.00 0.00 0.00 3.55
347 348 5.475909 AGTCAATGGAGACGACTACTTTACA 59.524 40.000 0.00 0.00 43.24 2.41
348 349 5.952033 AGTCAATGGAGACGACTACTTTAC 58.048 41.667 0.00 0.00 43.24 2.01
351 352 4.079970 TGAGTCAATGGAGACGACTACTT 58.920 43.478 0.00 0.00 43.24 2.24
352 353 3.440872 GTGAGTCAATGGAGACGACTACT 59.559 47.826 0.00 0.00 43.24 2.57
353 354 3.427773 GGTGAGTCAATGGAGACGACTAC 60.428 52.174 0.00 0.00 43.24 2.73
354 355 2.753452 GGTGAGTCAATGGAGACGACTA 59.247 50.000 0.00 0.00 43.24 2.59
355 356 1.546476 GGTGAGTCAATGGAGACGACT 59.454 52.381 0.00 0.00 43.24 4.18
357 358 0.895530 GGGTGAGTCAATGGAGACGA 59.104 55.000 0.00 0.00 43.24 4.20
358 359 0.898320 AGGGTGAGTCAATGGAGACG 59.102 55.000 0.00 0.00 43.24 4.18
359 360 5.777732 AGATATAGGGTGAGTCAATGGAGAC 59.222 44.000 0.00 0.00 38.81 3.36
360 361 5.970289 AGATATAGGGTGAGTCAATGGAGA 58.030 41.667 0.00 0.00 0.00 3.71
363 364 7.453126 AGTCTAAGATATAGGGTGAGTCAATGG 59.547 40.741 0.00 0.00 0.00 3.16
364 365 8.303156 CAGTCTAAGATATAGGGTGAGTCAATG 58.697 40.741 0.00 0.00 0.00 2.82
365 366 7.039363 GCAGTCTAAGATATAGGGTGAGTCAAT 60.039 40.741 0.00 0.00 0.00 2.57
366 367 6.265649 GCAGTCTAAGATATAGGGTGAGTCAA 59.734 42.308 0.00 0.00 0.00 3.18
367 368 5.770663 GCAGTCTAAGATATAGGGTGAGTCA 59.229 44.000 0.00 0.00 0.00 3.41
368 369 5.770663 TGCAGTCTAAGATATAGGGTGAGTC 59.229 44.000 0.00 0.00 0.00 3.36
369 370 5.706447 TGCAGTCTAAGATATAGGGTGAGT 58.294 41.667 0.00 0.00 0.00 3.41
371 372 5.080337 CCTGCAGTCTAAGATATAGGGTGA 58.920 45.833 13.81 0.00 0.00 4.02
372 373 4.835615 ACCTGCAGTCTAAGATATAGGGTG 59.164 45.833 13.81 0.00 0.00 4.61
373 374 5.081315 ACCTGCAGTCTAAGATATAGGGT 57.919 43.478 13.81 0.00 0.00 4.34
374 375 5.336055 CGAACCTGCAGTCTAAGATATAGGG 60.336 48.000 13.81 0.00 0.00 3.53
375 376 5.241949 ACGAACCTGCAGTCTAAGATATAGG 59.758 44.000 13.81 0.00 0.00 2.57
376 377 6.320494 ACGAACCTGCAGTCTAAGATATAG 57.680 41.667 13.81 0.00 0.00 1.31
377 378 6.461092 CCAACGAACCTGCAGTCTAAGATATA 60.461 42.308 13.81 0.00 0.00 0.86
378 379 5.352284 CAACGAACCTGCAGTCTAAGATAT 58.648 41.667 13.81 0.00 0.00 1.63
379 380 4.381612 CCAACGAACCTGCAGTCTAAGATA 60.382 45.833 13.81 0.00 0.00 1.98
380 381 3.589988 CAACGAACCTGCAGTCTAAGAT 58.410 45.455 13.81 0.00 0.00 2.40
381 382 2.288825 CCAACGAACCTGCAGTCTAAGA 60.289 50.000 13.81 0.00 0.00 2.10
384 385 1.045407 ACCAACGAACCTGCAGTCTA 58.955 50.000 13.81 0.00 0.00 2.59
385 386 0.180406 AACCAACGAACCTGCAGTCT 59.820 50.000 13.81 0.00 0.00 3.24
386 387 0.307760 CAACCAACGAACCTGCAGTC 59.692 55.000 13.81 3.40 0.00 3.51
387 388 1.101049 CCAACCAACGAACCTGCAGT 61.101 55.000 13.81 0.00 0.00 4.40
388 389 1.101049 ACCAACCAACGAACCTGCAG 61.101 55.000 6.78 6.78 0.00 4.41
389 390 0.681564 AACCAACCAACGAACCTGCA 60.682 50.000 0.00 0.00 0.00 4.41
391 392 0.306533 CGAACCAACCAACGAACCTG 59.693 55.000 0.00 0.00 0.00 4.00
393 394 0.305617 GACGAACCAACCAACGAACC 59.694 55.000 0.00 0.00 0.00 3.62
394 395 0.042794 CGACGAACCAACCAACGAAC 60.043 55.000 0.00 0.00 0.00 3.95
395 396 0.459934 ACGACGAACCAACCAACGAA 60.460 50.000 0.00 0.00 0.00 3.85
396 397 0.383590 TACGACGAACCAACCAACGA 59.616 50.000 0.00 0.00 0.00 3.85
397 398 0.503961 GTACGACGAACCAACCAACG 59.496 55.000 0.00 0.00 0.00 4.10
398 399 1.788886 GAGTACGACGAACCAACCAAC 59.211 52.381 0.00 0.00 0.00 3.77
399 400 1.682854 AGAGTACGACGAACCAACCAA 59.317 47.619 0.00 0.00 0.00 3.67
400 401 1.267806 GAGAGTACGACGAACCAACCA 59.732 52.381 0.00 0.00 0.00 3.67
401 402 1.727213 CGAGAGTACGACGAACCAACC 60.727 57.143 0.00 0.00 35.09 3.77
402 403 1.599992 CGAGAGTACGACGAACCAAC 58.400 55.000 0.00 0.00 35.09 3.77
405 406 1.579626 CGCGAGAGTACGACGAACC 60.580 63.158 0.00 0.00 35.93 3.62
406 407 0.366871 TACGCGAGAGTACGACGAAC 59.633 55.000 15.93 0.00 36.92 3.95
407 408 1.067693 TTACGCGAGAGTACGACGAA 58.932 50.000 15.93 0.00 36.92 3.85
408 409 1.005662 CATTACGCGAGAGTACGACGA 60.006 52.381 15.93 0.00 36.92 4.20
409 410 1.267235 ACATTACGCGAGAGTACGACG 60.267 52.381 15.93 0.00 38.17 5.12
411 412 1.530441 GCACATTACGCGAGAGTACGA 60.530 52.381 15.93 0.00 35.09 3.43
412 413 0.838229 GCACATTACGCGAGAGTACG 59.162 55.000 15.93 0.00 0.00 3.67
422 423 3.179795 GCTATCAGTACACGCACATTACG 59.820 47.826 0.00 0.00 0.00 3.18
423 424 4.109766 TGCTATCAGTACACGCACATTAC 58.890 43.478 0.00 0.00 0.00 1.89
424 425 4.379339 TGCTATCAGTACACGCACATTA 57.621 40.909 0.00 0.00 0.00 1.90
425 426 3.245518 TGCTATCAGTACACGCACATT 57.754 42.857 0.00 0.00 0.00 2.71
426 427 2.959507 TGCTATCAGTACACGCACAT 57.040 45.000 0.00 0.00 0.00 3.21
429 430 1.816224 TCAGTGCTATCAGTACACGCA 59.184 47.619 0.00 0.00 39.31 5.24
431 432 4.292977 TGATCAGTGCTATCAGTACACG 57.707 45.455 0.00 0.00 39.31 4.49
436 437 9.265901 GTGTTAATTATGATCAGTGCTATCAGT 57.734 33.333 0.09 0.00 36.82 3.41
437 438 8.715998 GGTGTTAATTATGATCAGTGCTATCAG 58.284 37.037 0.09 0.00 36.82 2.90
438 439 8.432013 AGGTGTTAATTATGATCAGTGCTATCA 58.568 33.333 0.09 0.00 37.73 2.15
439 440 8.839310 AGGTGTTAATTATGATCAGTGCTATC 57.161 34.615 0.09 0.00 0.00 2.08
441 442 7.791029 TGAGGTGTTAATTATGATCAGTGCTA 58.209 34.615 0.09 0.00 0.00 3.49
442 443 6.653020 TGAGGTGTTAATTATGATCAGTGCT 58.347 36.000 0.09 0.00 0.00 4.40
443 444 6.925610 TGAGGTGTTAATTATGATCAGTGC 57.074 37.500 0.09 0.00 0.00 4.40
444 445 7.277760 TCGTTGAGGTGTTAATTATGATCAGTG 59.722 37.037 0.09 0.00 0.00 3.66
445 446 7.277981 GTCGTTGAGGTGTTAATTATGATCAGT 59.722 37.037 0.09 0.00 0.00 3.41
447 448 7.100409 TGTCGTTGAGGTGTTAATTATGATCA 58.900 34.615 0.00 0.00 0.00 2.92
448 449 7.534085 TGTCGTTGAGGTGTTAATTATGATC 57.466 36.000 0.00 0.00 0.00 2.92
449 450 8.506168 AATGTCGTTGAGGTGTTAATTATGAT 57.494 30.769 0.00 0.00 0.00 2.45
450 451 7.822334 AGAATGTCGTTGAGGTGTTAATTATGA 59.178 33.333 0.00 0.00 0.00 2.15
452 453 7.822334 TGAGAATGTCGTTGAGGTGTTAATTAT 59.178 33.333 0.00 0.00 0.00 1.28
453 454 7.156000 TGAGAATGTCGTTGAGGTGTTAATTA 58.844 34.615 0.00 0.00 0.00 1.40
454 455 5.995282 TGAGAATGTCGTTGAGGTGTTAATT 59.005 36.000 0.00 0.00 0.00 1.40
455 456 5.547465 TGAGAATGTCGTTGAGGTGTTAAT 58.453 37.500 0.00 0.00 0.00 1.40
456 457 4.951254 TGAGAATGTCGTTGAGGTGTTAA 58.049 39.130 0.00 0.00 0.00 2.01
457 458 4.594123 TGAGAATGTCGTTGAGGTGTTA 57.406 40.909 0.00 0.00 0.00 2.41
508 509 4.163552 GGCCGTACAGCAAAAAGTTAATC 58.836 43.478 3.01 0.00 0.00 1.75
514 515 1.066303 TGTTGGCCGTACAGCAAAAAG 59.934 47.619 6.42 0.00 0.00 2.27
515 516 1.103803 TGTTGGCCGTACAGCAAAAA 58.896 45.000 6.42 0.00 0.00 1.94
518 519 0.536233 ATGTGTTGGCCGTACAGCAA 60.536 50.000 10.51 0.00 33.35 3.91
522 523 0.389296 CGAGATGTGTTGGCCGTACA 60.389 55.000 6.42 6.42 0.00 2.90
541 542 1.884926 GGCATCAGTCGTGCTAGCC 60.885 63.158 13.29 2.49 42.16 3.93
542 543 1.884926 GGGCATCAGTCGTGCTAGC 60.885 63.158 8.10 8.10 42.16 3.42
545 546 2.267006 CTGGGCATCAGTCGTGCT 59.733 61.111 0.00 0.00 42.16 4.40
546 547 3.503363 GCTGGGCATCAGTCGTGC 61.503 66.667 7.89 0.00 45.08 5.34
547 548 1.812922 GAGCTGGGCATCAGTCGTG 60.813 63.158 0.00 0.00 45.08 4.35
549 550 1.521010 CAGAGCTGGGCATCAGTCG 60.521 63.158 0.00 0.00 45.08 4.18
551 552 2.271497 GCAGAGCTGGGCATCAGT 59.729 61.111 0.00 0.00 45.08 3.41
552 553 2.516460 GGCAGAGCTGGGCATCAG 60.516 66.667 8.33 2.37 46.03 2.90
555 556 4.790962 CACGGCAGAGCTGGGCAT 62.791 66.667 8.33 0.00 39.57 4.40
561 562 2.919856 AGGTGACACGGCAGAGCT 60.920 61.111 0.00 0.00 0.00 4.09
562 563 2.433318 GAGGTGACACGGCAGAGC 60.433 66.667 0.00 0.00 0.00 4.09
563 564 2.262915 GGAGGTGACACGGCAGAG 59.737 66.667 0.00 0.00 0.00 3.35
564 565 2.523168 TGGAGGTGACACGGCAGA 60.523 61.111 0.00 0.00 0.00 4.26
566 567 2.842462 AGTGGAGGTGACACGGCA 60.842 61.111 0.00 0.00 43.41 5.69
567 568 2.048127 GAGTGGAGGTGACACGGC 60.048 66.667 0.00 0.00 43.41 5.68
578 592 1.813859 CATAGGAACGGCGAGTGGA 59.186 57.895 16.62 0.00 0.00 4.02
600 614 4.865761 TGGACCGCGCGCTGTATC 62.866 66.667 28.05 21.67 0.00 2.24
693 740 8.055181 AGCTAGATTCCTGAAAATAATCAACCA 58.945 33.333 0.00 0.00 33.06 3.67
751 798 7.850982 GCACGATAAATTTCATTGTACTACCTG 59.149 37.037 0.00 0.00 0.00 4.00
768 825 4.746535 TCTGATAAGGTGGCACGATAAA 57.253 40.909 12.17 0.00 0.00 1.40
784 841 4.770531 CCATGCATGTGGGAATATTCTGAT 59.229 41.667 24.58 0.37 35.55 2.90
815 872 3.930336 TGTCTCTGCCAACTAACTGATG 58.070 45.455 0.00 0.00 0.00 3.07
821 878 7.450074 TCTAATTTTCTGTCTCTGCCAACTAA 58.550 34.615 0.00 0.00 0.00 2.24
822 879 7.004555 TCTAATTTTCTGTCTCTGCCAACTA 57.995 36.000 0.00 0.00 0.00 2.24
823 880 5.869579 TCTAATTTTCTGTCTCTGCCAACT 58.130 37.500 0.00 0.00 0.00 3.16
824 881 5.391416 GCTCTAATTTTCTGTCTCTGCCAAC 60.391 44.000 0.00 0.00 0.00 3.77
825 882 4.697352 GCTCTAATTTTCTGTCTCTGCCAA 59.303 41.667 0.00 0.00 0.00 4.52
834 891 6.039047 CCATGCACATAGCTCTAATTTTCTGT 59.961 38.462 0.00 0.00 45.94 3.41
837 894 6.624352 TCCATGCACATAGCTCTAATTTTC 57.376 37.500 0.00 0.00 45.94 2.29
863 925 5.582665 GCCCTATTTATAATGCTCTTCCGAG 59.417 44.000 0.00 0.00 40.35 4.63
864 926 5.012664 TGCCCTATTTATAATGCTCTTCCGA 59.987 40.000 0.00 0.00 0.00 4.55
941 1014 2.293399 GTCTCAAGAGAGCTAGCTAGGC 59.707 54.545 19.38 8.10 41.81 3.93
1108 1194 1.305219 TAGCTGTTGCCATTGCCGTC 61.305 55.000 0.00 0.00 40.80 4.79
1124 1210 2.278401 CGTTCCCGTAGCCGTAGC 60.278 66.667 0.00 0.00 40.32 3.58
1254 1340 1.205655 CAGTCATGGAAGAAGAGGCGA 59.794 52.381 0.00 0.00 0.00 5.54
1363 1490 1.067749 CATCGCAGCCCTGAGAGAG 59.932 63.158 7.72 0.16 42.36 3.20
1365 1492 2.108566 CCATCGCAGCCCTGAGAG 59.891 66.667 7.72 1.20 42.36 3.20
1556 3447 1.375523 CGTACCAGAACTGTGCCCC 60.376 63.158 1.18 0.00 0.00 5.80
1597 3521 3.639008 TGAACGTGTGCTGCTGCG 61.639 61.111 11.21 5.41 43.34 5.18
1598 3522 2.051882 GTGAACGTGTGCTGCTGC 60.052 61.111 8.89 8.89 40.20 5.25
1599 3523 2.246397 CGTGAACGTGTGCTGCTG 59.754 61.111 0.00 0.00 34.11 4.41
1612 3536 0.518195 CACATGCATGCAGAACGTGA 59.482 50.000 26.69 0.00 37.49 4.35
2082 4039 4.767255 GGTCGGAGTGCAGCAGGG 62.767 72.222 0.00 0.00 0.00 4.45
2315 4272 7.147976 ACTTTTCAACATACATTCCTTGCTTC 58.852 34.615 0.00 0.00 0.00 3.86
2422 4379 4.190001 TCTGCCAAAACGTAACAACAGTA 58.810 39.130 0.00 0.00 0.00 2.74
2450 4409 9.695526 TTTGAAATTCAATCGAATGAACTGAAT 57.304 25.926 17.78 8.71 41.12 2.57
2458 4417 7.952339 ACCGAAATTTGAAATTCAATCGAATG 58.048 30.769 23.52 13.76 41.12 2.67
2462 4421 7.325821 TCAGAACCGAAATTTGAAATTCAATCG 59.674 33.333 18.03 18.03 36.11 3.34
2467 4426 7.138736 TCTGTCAGAACCGAAATTTGAAATTC 58.861 34.615 3.32 0.00 0.00 2.17
2477 4436 5.588648 AGTTCAAATTCTGTCAGAACCGAAA 59.411 36.000 17.49 7.62 37.00 3.46
2480 4439 5.007626 TCAAGTTCAAATTCTGTCAGAACCG 59.992 40.000 17.49 9.03 37.00 4.44
2750 4709 1.000171 CAGACACTCAGCAGTAGCACA 60.000 52.381 0.00 0.00 45.49 4.57
2830 4791 2.726912 GCACACACACATGCACGC 60.727 61.111 0.00 0.00 41.65 5.34
2870 4831 1.259507 ACGAACGCACACAACACATAC 59.740 47.619 0.00 0.00 0.00 2.39
2949 4923 4.323485 CCTTCATAAACTCTGCCACACCTA 60.323 45.833 0.00 0.00 0.00 3.08
3142 5141 5.608449 TGCTGGTCTGATTTCTGATAGATG 58.392 41.667 0.00 0.00 0.00 2.90
3152 5151 1.000396 GGCCCTGCTGGTCTGATTT 60.000 57.895 9.00 0.00 35.10 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.