Multiple sequence alignment - TraesCS7A01G123900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G123900 chr7A 100.000 6874 0 0 1 6874 80061264 80068137 0.000000e+00 12694.0
1 TraesCS7A01G123900 chr7A 88.154 363 33 9 6157 6517 85958117 85957763 2.290000e-114 424.0
2 TraesCS7A01G123900 chr7A 89.189 259 23 5 6168 6423 64729101 64729357 1.110000e-82 318.0
3 TraesCS7A01G123900 chr7A 91.549 71 6 0 345 415 79822743 79822813 1.580000e-16 99.0
4 TraesCS7A01G123900 chr7D 94.002 4852 213 43 1005 5825 75925383 75930187 0.000000e+00 7276.0
5 TraesCS7A01G123900 chr7D 89.867 829 56 16 6056 6874 75930527 75931337 0.000000e+00 1040.0
6 TraesCS7A01G123900 chr7D 92.737 537 37 2 417 952 75924504 75925039 0.000000e+00 774.0
7 TraesCS7A01G123900 chr7D 95.942 345 13 1 1 344 575839284 575838940 6.020000e-155 558.0
8 TraesCS7A01G123900 chr7D 90.085 353 27 8 6168 6517 84796426 84796079 1.050000e-122 451.0
9 TraesCS7A01G123900 chr7D 88.727 275 24 7 6167 6436 60440280 60440552 5.140000e-86 329.0
10 TraesCS7A01G123900 chr7D 86.063 287 35 3 6167 6452 60579560 60579842 3.120000e-78 303.0
11 TraesCS7A01G123900 chr7D 92.708 192 12 2 5809 5999 75930209 75930399 6.790000e-70 276.0
12 TraesCS7A01G123900 chr7B 93.060 4222 188 46 480 4643 22056362 22060536 0.000000e+00 6076.0
13 TraesCS7A01G123900 chr7B 91.106 1754 106 19 417 2143 21942157 21943887 0.000000e+00 2329.0
14 TraesCS7A01G123900 chr7B 90.753 1687 112 20 480 2143 21995535 21997200 0.000000e+00 2211.0
15 TraesCS7A01G123900 chr7B 94.679 996 41 8 4640 5624 22060638 22061632 0.000000e+00 1535.0
16 TraesCS7A01G123900 chr7B 86.574 864 66 26 6021 6874 22062219 22063042 0.000000e+00 907.0
17 TraesCS7A01G123900 chr7B 95.374 281 11 2 6168 6448 34490727 34490449 4.890000e-121 446.0
18 TraesCS7A01G123900 chr7B 90.566 265 23 2 6182 6445 2943473 2943736 3.950000e-92 350.0
19 TraesCS7A01G123900 chr7B 84.477 277 13 3 5579 5825 22061620 22061896 5.320000e-61 246.0
20 TraesCS7A01G123900 chr2D 95.665 346 14 1 1 345 540804764 540805109 7.790000e-154 555.0
21 TraesCS7A01G123900 chr5D 94.678 357 17 2 1 356 113534939 113534584 2.800000e-153 553.0
22 TraesCS7A01G123900 chr5D 95.157 351 15 2 1 350 537348843 537349192 2.800000e-153 553.0
23 TraesCS7A01G123900 chr5D 100.000 35 0 0 6555 6589 21301555 21301521 1.600000e-06 65.8
24 TraesCS7A01G123900 chr3D 95.652 345 14 1 1 344 298407752 298407408 2.800000e-153 553.0
25 TraesCS7A01G123900 chr3D 95.652 345 14 1 1 344 303260622 303260278 2.800000e-153 553.0
26 TraesCS7A01G123900 chr1D 95.652 345 14 1 1 344 59601245 59600901 2.800000e-153 553.0
27 TraesCS7A01G123900 chr1D 95.652 345 14 1 1 344 433452569 433452225 2.800000e-153 553.0
28 TraesCS7A01G123900 chr1D 88.506 87 8 2 4512 4597 277362515 277362600 3.390000e-18 104.0
29 TraesCS7A01G123900 chr6D 95.389 347 15 1 1 346 325375261 325375607 1.010000e-152 551.0
30 TraesCS7A01G123900 chr4A 88.298 94 10 1 4517 4610 27643611 27643519 2.030000e-20 111.0
31 TraesCS7A01G123900 chr4A 88.298 94 9 2 4515 4607 467263320 467263412 2.030000e-20 111.0
32 TraesCS7A01G123900 chr4A 88.043 92 8 3 4515 4606 429231179 429231267 9.430000e-19 106.0
33 TraesCS7A01G123900 chr4B 88.889 90 7 3 4510 4598 41531509 41531422 2.620000e-19 108.0
34 TraesCS7A01G123900 chr1A 88.636 88 8 2 4512 4598 350017091 350017177 9.430000e-19 106.0
35 TraesCS7A01G123900 chr4D 87.640 89 8 3 4518 4606 132962215 132962130 4.390000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G123900 chr7A 80061264 80068137 6873 False 12694.0 12694 100.0000 1 6874 1 chr7A.!!$F3 6873
1 TraesCS7A01G123900 chr7D 75924504 75931337 6833 False 2341.5 7276 92.3285 417 6874 4 chr7D.!!$F3 6457
2 TraesCS7A01G123900 chr7B 21942157 21943887 1730 False 2329.0 2329 91.1060 417 2143 1 chr7B.!!$F2 1726
3 TraesCS7A01G123900 chr7B 21995535 21997200 1665 False 2211.0 2211 90.7530 480 2143 1 chr7B.!!$F3 1663
4 TraesCS7A01G123900 chr7B 22056362 22063042 6680 False 2191.0 6076 89.6975 480 6874 4 chr7B.!!$F4 6394

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
374 375 0.031616 CTCTGCTCCCCTTCCCTACT 60.032 60.000 0.0 0.0 0.00 2.57 F
380 381 0.032017 TCCCCTTCCCTACTCTGCTC 60.032 60.000 0.0 0.0 0.00 4.26 F
1560 1883 0.107703 TCCATCTCCACACGCATTCC 60.108 55.000 0.0 0.0 0.00 3.01 F
3316 3683 0.034670 GCCCTCTGCTCTGTCCATTT 60.035 55.000 0.0 0.0 36.87 2.32 F
4146 4516 1.354031 TCCTGCAAAGCCCTCACAATA 59.646 47.619 0.0 0.0 0.00 1.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2193 2554 0.172578 TATCGCGTCCCTGTCAACAG 59.827 55.000 5.77 3.08 43.40 3.16 R
2311 2672 5.741011 ACCTCGTAATTCTTGAATAAGCCA 58.259 37.500 0.00 0.00 33.82 4.75 R
3345 3712 1.805345 CTGCAGTGCCAGAGAGAAAAG 59.195 52.381 13.72 0.00 34.77 2.27 R
5010 5488 2.917701 TGCAGTGAACAACAACTGTG 57.082 45.000 0.00 0.00 38.67 3.66 R
5896 6498 0.106015 ACCCAACCTGCTTGAGCTTT 60.106 50.000 4.44 0.00 42.66 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.734855 GACTGTTACATGATAAACCGCAT 57.265 39.130 0.00 0.00 0.00 4.73
23 24 5.734855 ACTGTTACATGATAAACCGCATC 57.265 39.130 0.00 0.00 0.00 3.91
24 25 4.574828 ACTGTTACATGATAAACCGCATCC 59.425 41.667 0.00 0.00 0.00 3.51
25 26 3.558006 TGTTACATGATAAACCGCATCCG 59.442 43.478 0.00 0.00 0.00 4.18
37 38 1.800805 CGCATCCGGCATAATTCTCT 58.199 50.000 0.00 0.00 45.17 3.10
38 39 2.959516 CGCATCCGGCATAATTCTCTA 58.040 47.619 0.00 0.00 45.17 2.43
39 40 3.525537 CGCATCCGGCATAATTCTCTAT 58.474 45.455 0.00 0.00 45.17 1.98
40 41 3.553511 CGCATCCGGCATAATTCTCTATC 59.446 47.826 0.00 0.00 45.17 2.08
41 42 4.507710 GCATCCGGCATAATTCTCTATCA 58.492 43.478 0.00 0.00 43.97 2.15
42 43 4.331168 GCATCCGGCATAATTCTCTATCAC 59.669 45.833 0.00 0.00 43.97 3.06
43 44 4.537135 TCCGGCATAATTCTCTATCACC 57.463 45.455 0.00 0.00 0.00 4.02
44 45 3.056821 TCCGGCATAATTCTCTATCACCG 60.057 47.826 0.00 0.00 37.88 4.94
45 46 3.056821 CCGGCATAATTCTCTATCACCGA 60.057 47.826 0.00 0.00 40.49 4.69
46 47 4.382040 CCGGCATAATTCTCTATCACCGAT 60.382 45.833 0.00 0.00 40.49 4.18
47 48 4.800993 CGGCATAATTCTCTATCACCGATC 59.199 45.833 0.00 0.00 40.49 3.69
48 49 5.112686 GGCATAATTCTCTATCACCGATCC 58.887 45.833 0.00 0.00 0.00 3.36
49 50 5.337571 GGCATAATTCTCTATCACCGATCCA 60.338 44.000 0.00 0.00 0.00 3.41
50 51 6.166279 GCATAATTCTCTATCACCGATCCAA 58.834 40.000 0.00 0.00 0.00 3.53
51 52 6.820656 GCATAATTCTCTATCACCGATCCAAT 59.179 38.462 0.00 0.00 0.00 3.16
52 53 7.201591 GCATAATTCTCTATCACCGATCCAATG 60.202 40.741 0.00 0.00 0.00 2.82
53 54 3.667497 TCTCTATCACCGATCCAATGC 57.333 47.619 0.00 0.00 0.00 3.56
54 55 2.300152 TCTCTATCACCGATCCAATGCC 59.700 50.000 0.00 0.00 0.00 4.40
55 56 2.301296 CTCTATCACCGATCCAATGCCT 59.699 50.000 0.00 0.00 0.00 4.75
56 57 3.506398 TCTATCACCGATCCAATGCCTA 58.494 45.455 0.00 0.00 0.00 3.93
57 58 4.096681 TCTATCACCGATCCAATGCCTAT 58.903 43.478 0.00 0.00 0.00 2.57
58 59 2.549064 TCACCGATCCAATGCCTATG 57.451 50.000 0.00 0.00 0.00 2.23
59 60 2.046292 TCACCGATCCAATGCCTATGA 58.954 47.619 0.00 0.00 0.00 2.15
60 61 2.037641 TCACCGATCCAATGCCTATGAG 59.962 50.000 0.00 0.00 0.00 2.90
61 62 1.271054 ACCGATCCAATGCCTATGAGC 60.271 52.381 0.00 0.00 0.00 4.26
62 63 1.002888 CCGATCCAATGCCTATGAGCT 59.997 52.381 0.00 0.00 0.00 4.09
63 64 2.551721 CCGATCCAATGCCTATGAGCTT 60.552 50.000 0.00 0.00 0.00 3.74
64 65 3.144506 CGATCCAATGCCTATGAGCTTT 58.855 45.455 0.00 0.00 0.00 3.51
65 66 3.567164 CGATCCAATGCCTATGAGCTTTT 59.433 43.478 0.00 0.00 0.00 2.27
66 67 4.320057 CGATCCAATGCCTATGAGCTTTTC 60.320 45.833 0.00 0.00 0.00 2.29
67 68 3.966979 TCCAATGCCTATGAGCTTTTCA 58.033 40.909 0.00 0.00 40.85 2.69
68 69 3.696051 TCCAATGCCTATGAGCTTTTCAC 59.304 43.478 0.00 0.00 38.99 3.18
69 70 3.444742 CCAATGCCTATGAGCTTTTCACA 59.555 43.478 0.00 0.00 38.99 3.58
70 71 4.098960 CCAATGCCTATGAGCTTTTCACAT 59.901 41.667 0.00 0.00 38.99 3.21
71 72 5.300034 CCAATGCCTATGAGCTTTTCACATA 59.700 40.000 0.00 0.00 38.99 2.29
72 73 6.015688 CCAATGCCTATGAGCTTTTCACATAT 60.016 38.462 0.00 0.00 38.99 1.78
73 74 7.431249 CAATGCCTATGAGCTTTTCACATATT 58.569 34.615 0.00 0.00 38.99 1.28
74 75 6.381481 TGCCTATGAGCTTTTCACATATTG 57.619 37.500 0.00 0.00 38.99 1.90
75 76 5.887598 TGCCTATGAGCTTTTCACATATTGT 59.112 36.000 0.00 0.00 38.99 2.71
76 77 6.377996 TGCCTATGAGCTTTTCACATATTGTT 59.622 34.615 0.00 0.00 38.99 2.83
77 78 6.914757 GCCTATGAGCTTTTCACATATTGTTC 59.085 38.462 0.00 0.00 38.99 3.18
78 79 7.201767 GCCTATGAGCTTTTCACATATTGTTCT 60.202 37.037 0.00 0.00 38.99 3.01
79 80 8.341173 CCTATGAGCTTTTCACATATTGTTCTC 58.659 37.037 0.00 0.00 38.99 2.87
80 81 6.500684 TGAGCTTTTCACATATTGTTCTCC 57.499 37.500 0.00 0.00 0.00 3.71
81 82 5.122239 TGAGCTTTTCACATATTGTTCTCCG 59.878 40.000 0.00 0.00 0.00 4.63
82 83 4.098416 GCTTTTCACATATTGTTCTCCGC 58.902 43.478 0.00 0.00 0.00 5.54
83 84 4.142600 GCTTTTCACATATTGTTCTCCGCT 60.143 41.667 0.00 0.00 0.00 5.52
84 85 5.619981 GCTTTTCACATATTGTTCTCCGCTT 60.620 40.000 0.00 0.00 0.00 4.68
85 86 6.403200 GCTTTTCACATATTGTTCTCCGCTTA 60.403 38.462 0.00 0.00 0.00 3.09
86 87 7.624360 TTTTCACATATTGTTCTCCGCTTAT 57.376 32.000 0.00 0.00 0.00 1.73
87 88 7.624360 TTTCACATATTGTTCTCCGCTTATT 57.376 32.000 0.00 0.00 0.00 1.40
88 89 7.624360 TTCACATATTGTTCTCCGCTTATTT 57.376 32.000 0.00 0.00 0.00 1.40
89 90 8.725405 TTCACATATTGTTCTCCGCTTATTTA 57.275 30.769 0.00 0.00 0.00 1.40
90 91 8.138365 TCACATATTGTTCTCCGCTTATTTAC 57.862 34.615 0.00 0.00 0.00 2.01
91 92 7.985184 TCACATATTGTTCTCCGCTTATTTACT 59.015 33.333 0.00 0.00 0.00 2.24
92 93 8.612619 CACATATTGTTCTCCGCTTATTTACTT 58.387 33.333 0.00 0.00 0.00 2.24
93 94 9.174166 ACATATTGTTCTCCGCTTATTTACTTT 57.826 29.630 0.00 0.00 0.00 2.66
96 97 6.490566 TGTTCTCCGCTTATTTACTTTTCC 57.509 37.500 0.00 0.00 0.00 3.13
97 98 5.121142 TGTTCTCCGCTTATTTACTTTTCCG 59.879 40.000 0.00 0.00 0.00 4.30
98 99 4.824289 TCTCCGCTTATTTACTTTTCCGT 58.176 39.130 0.00 0.00 0.00 4.69
99 100 5.240121 TCTCCGCTTATTTACTTTTCCGTT 58.760 37.500 0.00 0.00 0.00 4.44
100 101 5.121142 TCTCCGCTTATTTACTTTTCCGTTG 59.879 40.000 0.00 0.00 0.00 4.10
101 102 3.849708 CCGCTTATTTACTTTTCCGTTGC 59.150 43.478 0.00 0.00 0.00 4.17
102 103 4.379082 CCGCTTATTTACTTTTCCGTTGCT 60.379 41.667 0.00 0.00 0.00 3.91
103 104 5.163834 CCGCTTATTTACTTTTCCGTTGCTA 60.164 40.000 0.00 0.00 0.00 3.49
104 105 5.731263 CGCTTATTTACTTTTCCGTTGCTAC 59.269 40.000 0.00 0.00 0.00 3.58
105 106 6.401796 CGCTTATTTACTTTTCCGTTGCTACT 60.402 38.462 0.00 0.00 0.00 2.57
106 107 7.201461 CGCTTATTTACTTTTCCGTTGCTACTA 60.201 37.037 0.00 0.00 0.00 1.82
107 108 8.610035 GCTTATTTACTTTTCCGTTGCTACTAT 58.390 33.333 0.00 0.00 0.00 2.12
144 145 9.402320 ACAAAACCCAAAAATATTACTTTTGCT 57.598 25.926 5.11 0.00 40.75 3.91
147 148 9.496873 AAACCCAAAAATATTACTTTTGCTACC 57.503 29.630 5.11 0.00 40.75 3.18
148 149 7.317390 ACCCAAAAATATTACTTTTGCTACCG 58.683 34.615 5.11 0.00 40.75 4.02
149 150 7.039574 ACCCAAAAATATTACTTTTGCTACCGT 60.040 33.333 5.11 0.00 40.75 4.83
150 151 7.815549 CCCAAAAATATTACTTTTGCTACCGTT 59.184 33.333 5.11 0.00 40.75 4.44
151 152 9.843334 CCAAAAATATTACTTTTGCTACCGTTA 57.157 29.630 5.11 0.00 40.75 3.18
153 154 9.844790 AAAAATATTACTTTTGCTACCGTTACC 57.155 29.630 0.00 0.00 0.00 2.85
154 155 6.833342 ATATTACTTTTGCTACCGTTACCG 57.167 37.500 0.00 0.00 0.00 4.02
155 156 2.531522 ACTTTTGCTACCGTTACCGT 57.468 45.000 0.00 0.00 0.00 4.83
156 157 2.837498 ACTTTTGCTACCGTTACCGTT 58.163 42.857 0.00 0.00 0.00 4.44
157 158 3.988819 ACTTTTGCTACCGTTACCGTTA 58.011 40.909 0.00 0.00 0.00 3.18
158 159 3.740832 ACTTTTGCTACCGTTACCGTTAC 59.259 43.478 0.00 0.00 0.00 2.50
159 160 3.658757 TTTGCTACCGTTACCGTTACT 57.341 42.857 0.00 0.00 0.00 2.24
160 161 3.658757 TTGCTACCGTTACCGTTACTT 57.341 42.857 0.00 0.00 0.00 2.24
161 162 3.216147 TGCTACCGTTACCGTTACTTC 57.784 47.619 0.00 0.00 0.00 3.01
162 163 2.094752 TGCTACCGTTACCGTTACTTCC 60.095 50.000 0.00 0.00 0.00 3.46
163 164 2.094752 GCTACCGTTACCGTTACTTCCA 60.095 50.000 0.00 0.00 0.00 3.53
164 165 3.429410 GCTACCGTTACCGTTACTTCCAT 60.429 47.826 0.00 0.00 0.00 3.41
165 166 4.202010 GCTACCGTTACCGTTACTTCCATA 60.202 45.833 0.00 0.00 0.00 2.74
166 167 4.110036 ACCGTTACCGTTACTTCCATAC 57.890 45.455 0.00 0.00 0.00 2.39
167 168 3.763897 ACCGTTACCGTTACTTCCATACT 59.236 43.478 0.00 0.00 0.00 2.12
168 169 4.947388 ACCGTTACCGTTACTTCCATACTA 59.053 41.667 0.00 0.00 0.00 1.82
169 170 5.163652 ACCGTTACCGTTACTTCCATACTAC 60.164 44.000 0.00 0.00 0.00 2.73
170 171 5.066505 CCGTTACCGTTACTTCCATACTACT 59.933 44.000 0.00 0.00 0.00 2.57
171 172 6.404734 CCGTTACCGTTACTTCCATACTACTT 60.405 42.308 0.00 0.00 0.00 2.24
172 173 7.029563 CGTTACCGTTACTTCCATACTACTTT 58.970 38.462 0.00 0.00 0.00 2.66
173 174 7.008628 CGTTACCGTTACTTCCATACTACTTTG 59.991 40.741 0.00 0.00 0.00 2.77
174 175 5.173664 ACCGTTACTTCCATACTACTTTGC 58.826 41.667 0.00 0.00 0.00 3.68
175 176 5.046807 ACCGTTACTTCCATACTACTTTGCT 60.047 40.000 0.00 0.00 0.00 3.91
176 177 6.153340 ACCGTTACTTCCATACTACTTTGCTA 59.847 38.462 0.00 0.00 0.00 3.49
177 178 6.474751 CCGTTACTTCCATACTACTTTGCTAC 59.525 42.308 0.00 0.00 0.00 3.58
178 179 7.256286 CGTTACTTCCATACTACTTTGCTACT 58.744 38.462 0.00 0.00 0.00 2.57
179 180 8.400947 CGTTACTTCCATACTACTTTGCTACTA 58.599 37.037 0.00 0.00 0.00 1.82
214 215 8.437360 TTGCAGATATTAAGTTATCAGGTGTG 57.563 34.615 0.00 0.00 32.10 3.82
215 216 6.992123 TGCAGATATTAAGTTATCAGGTGTGG 59.008 38.462 0.00 0.00 32.10 4.17
216 217 6.992715 GCAGATATTAAGTTATCAGGTGTGGT 59.007 38.462 0.23 0.00 32.10 4.16
217 218 7.499232 GCAGATATTAAGTTATCAGGTGTGGTT 59.501 37.037 0.23 0.00 32.10 3.67
218 219 8.830580 CAGATATTAAGTTATCAGGTGTGGTTG 58.169 37.037 0.23 0.00 32.10 3.77
219 220 8.768397 AGATATTAAGTTATCAGGTGTGGTTGA 58.232 33.333 0.23 0.00 32.10 3.18
220 221 9.391006 GATATTAAGTTATCAGGTGTGGTTGAA 57.609 33.333 0.00 0.00 0.00 2.69
221 222 9.920946 ATATTAAGTTATCAGGTGTGGTTGAAT 57.079 29.630 0.00 0.00 0.00 2.57
222 223 8.650143 ATTAAGTTATCAGGTGTGGTTGAATT 57.350 30.769 0.00 0.00 0.00 2.17
223 224 5.964958 AGTTATCAGGTGTGGTTGAATTG 57.035 39.130 0.00 0.00 0.00 2.32
224 225 5.630121 AGTTATCAGGTGTGGTTGAATTGA 58.370 37.500 0.00 0.00 0.00 2.57
225 226 5.473504 AGTTATCAGGTGTGGTTGAATTGAC 59.526 40.000 0.00 0.00 0.00 3.18
226 227 3.289407 TCAGGTGTGGTTGAATTGACA 57.711 42.857 0.00 0.00 0.00 3.58
227 228 3.625853 TCAGGTGTGGTTGAATTGACAA 58.374 40.909 0.00 0.00 0.00 3.18
228 229 3.380004 TCAGGTGTGGTTGAATTGACAAC 59.620 43.478 0.00 0.00 46.20 3.32
229 230 3.381272 CAGGTGTGGTTGAATTGACAACT 59.619 43.478 9.21 0.00 46.17 3.16
230 231 3.632145 AGGTGTGGTTGAATTGACAACTC 59.368 43.478 9.21 0.00 46.17 3.01
231 232 3.380004 GGTGTGGTTGAATTGACAACTCA 59.620 43.478 9.21 0.00 46.17 3.41
232 233 4.142271 GGTGTGGTTGAATTGACAACTCAA 60.142 41.667 7.94 7.94 46.17 3.02
233 234 4.798387 GTGTGGTTGAATTGACAACTCAAC 59.202 41.667 26.56 26.56 46.17 3.18
234 235 4.704540 TGTGGTTGAATTGACAACTCAACT 59.295 37.500 30.54 0.00 45.33 3.16
235 236 5.184864 TGTGGTTGAATTGACAACTCAACTT 59.815 36.000 30.54 5.91 45.33 2.66
236 237 5.743872 GTGGTTGAATTGACAACTCAACTTC 59.256 40.000 30.54 22.44 45.33 3.01
237 238 5.652014 TGGTTGAATTGACAACTCAACTTCT 59.348 36.000 30.54 0.00 45.33 2.85
238 239 6.826231 TGGTTGAATTGACAACTCAACTTCTA 59.174 34.615 30.54 17.71 45.33 2.10
239 240 7.338196 TGGTTGAATTGACAACTCAACTTCTAA 59.662 33.333 30.54 15.54 45.33 2.10
240 241 8.352942 GGTTGAATTGACAACTCAACTTCTAAT 58.647 33.333 30.54 0.00 45.33 1.73
243 244 9.778741 TGAATTGACAACTCAACTTCTAATACT 57.221 29.630 0.00 0.00 39.28 2.12
246 247 9.778741 ATTGACAACTCAACTTCTAATACTTGA 57.221 29.630 0.00 0.00 39.28 3.02
247 248 8.818141 TGACAACTCAACTTCTAATACTTGAG 57.182 34.615 4.99 4.99 43.51 3.02
248 249 8.638873 TGACAACTCAACTTCTAATACTTGAGA 58.361 33.333 12.09 0.00 41.42 3.27
249 250 9.477484 GACAACTCAACTTCTAATACTTGAGAA 57.523 33.333 12.09 0.00 41.42 2.87
264 265 6.765915 ACTTGAGAATATTCTTTGGCTTCC 57.234 37.500 18.88 4.72 37.73 3.46
265 266 5.654209 ACTTGAGAATATTCTTTGGCTTCCC 59.346 40.000 18.88 4.05 37.73 3.97
266 267 5.456921 TGAGAATATTCTTTGGCTTCCCT 57.543 39.130 18.88 0.00 37.73 4.20
267 268 5.831103 TGAGAATATTCTTTGGCTTCCCTT 58.169 37.500 18.88 0.00 37.73 3.95
268 269 5.653769 TGAGAATATTCTTTGGCTTCCCTTG 59.346 40.000 18.88 0.00 37.73 3.61
269 270 5.583932 AGAATATTCTTTGGCTTCCCTTGT 58.416 37.500 12.37 0.00 32.55 3.16
270 271 5.420104 AGAATATTCTTTGGCTTCCCTTGTG 59.580 40.000 12.37 0.00 32.55 3.33
271 272 2.452600 TTCTTTGGCTTCCCTTGTGT 57.547 45.000 0.00 0.00 0.00 3.72
272 273 1.981256 TCTTTGGCTTCCCTTGTGTC 58.019 50.000 0.00 0.00 0.00 3.67
273 274 0.593128 CTTTGGCTTCCCTTGTGTCG 59.407 55.000 0.00 0.00 0.00 4.35
274 275 0.181587 TTTGGCTTCCCTTGTGTCGA 59.818 50.000 0.00 0.00 0.00 4.20
275 276 0.181587 TTGGCTTCCCTTGTGTCGAA 59.818 50.000 0.00 0.00 0.00 3.71
276 277 0.400213 TGGCTTCCCTTGTGTCGAAT 59.600 50.000 0.00 0.00 0.00 3.34
277 278 1.087501 GGCTTCCCTTGTGTCGAATC 58.912 55.000 0.00 0.00 0.00 2.52
278 279 1.610624 GGCTTCCCTTGTGTCGAATCA 60.611 52.381 0.00 0.00 0.00 2.57
279 280 2.151202 GCTTCCCTTGTGTCGAATCAA 58.849 47.619 0.00 0.00 0.00 2.57
280 281 2.749621 GCTTCCCTTGTGTCGAATCAAT 59.250 45.455 4.42 0.00 0.00 2.57
281 282 3.938963 GCTTCCCTTGTGTCGAATCAATA 59.061 43.478 4.42 0.00 0.00 1.90
282 283 4.394920 GCTTCCCTTGTGTCGAATCAATAA 59.605 41.667 4.42 1.04 0.00 1.40
283 284 5.106317 GCTTCCCTTGTGTCGAATCAATAAA 60.106 40.000 4.42 0.80 0.00 1.40
284 285 6.404734 GCTTCCCTTGTGTCGAATCAATAAAT 60.405 38.462 4.42 0.00 0.00 1.40
285 286 7.461182 TTCCCTTGTGTCGAATCAATAAATT 57.539 32.000 4.42 0.00 0.00 1.82
286 287 7.461182 TCCCTTGTGTCGAATCAATAAATTT 57.539 32.000 0.00 0.00 0.00 1.82
287 288 7.312154 TCCCTTGTGTCGAATCAATAAATTTG 58.688 34.615 0.00 0.00 0.00 2.32
288 289 6.531240 CCCTTGTGTCGAATCAATAAATTTGG 59.469 38.462 0.00 1.78 0.00 3.28
289 290 6.531240 CCTTGTGTCGAATCAATAAATTTGGG 59.469 38.462 0.00 0.00 0.00 4.12
290 291 6.582677 TGTGTCGAATCAATAAATTTGGGT 57.417 33.333 0.00 0.00 0.00 4.51
291 292 6.987386 TGTGTCGAATCAATAAATTTGGGTT 58.013 32.000 0.00 0.00 0.00 4.11
292 293 6.865726 TGTGTCGAATCAATAAATTTGGGTTG 59.134 34.615 0.00 3.99 0.00 3.77
293 294 7.087639 GTGTCGAATCAATAAATTTGGGTTGA 58.912 34.615 14.00 14.00 35.33 3.18
294 295 7.596995 GTGTCGAATCAATAAATTTGGGTTGAA 59.403 33.333 15.01 2.31 34.62 2.69
295 296 8.310382 TGTCGAATCAATAAATTTGGGTTGAAT 58.690 29.630 15.01 9.74 34.62 2.57
296 297 9.796120 GTCGAATCAATAAATTTGGGTTGAATA 57.204 29.630 15.01 4.16 34.62 1.75
297 298 9.796120 TCGAATCAATAAATTTGGGTTGAATAC 57.204 29.630 15.01 10.41 34.62 1.89
298 299 9.801873 CGAATCAATAAATTTGGGTTGAATACT 57.198 29.630 15.01 5.42 34.62 2.12
308 309 3.729862 GGTTGAATACTCTACCCTCGG 57.270 52.381 0.00 0.00 40.45 4.63
309 310 3.294214 GGTTGAATACTCTACCCTCGGA 58.706 50.000 0.00 0.00 40.45 4.55
310 311 3.703052 GGTTGAATACTCTACCCTCGGAA 59.297 47.826 0.00 0.00 40.45 4.30
311 312 4.161001 GGTTGAATACTCTACCCTCGGAAA 59.839 45.833 0.00 0.00 40.45 3.13
312 313 4.996788 TGAATACTCTACCCTCGGAAAC 57.003 45.455 0.00 0.00 0.00 2.78
313 314 4.607239 TGAATACTCTACCCTCGGAAACT 58.393 43.478 0.00 0.00 0.00 2.66
314 315 4.401519 TGAATACTCTACCCTCGGAAACTG 59.598 45.833 0.00 0.00 0.00 3.16
315 316 2.305858 ACTCTACCCTCGGAAACTGT 57.694 50.000 0.00 0.00 0.00 3.55
316 317 2.606378 ACTCTACCCTCGGAAACTGTT 58.394 47.619 0.00 0.00 0.00 3.16
317 318 2.299297 ACTCTACCCTCGGAAACTGTTG 59.701 50.000 0.00 0.00 0.00 3.33
318 319 1.001633 TCTACCCTCGGAAACTGTTGC 59.998 52.381 0.00 0.00 0.00 4.17
330 331 6.216750 GGAAACTGTTGCGATCTCATATAC 57.783 41.667 0.00 0.00 0.00 1.47
331 332 5.986135 GGAAACTGTTGCGATCTCATATACT 59.014 40.000 0.00 0.00 0.00 2.12
332 333 6.480320 GGAAACTGTTGCGATCTCATATACTT 59.520 38.462 0.00 0.00 0.00 2.24
333 334 6.834959 AACTGTTGCGATCTCATATACTTG 57.165 37.500 0.00 0.00 0.00 3.16
334 335 5.907207 ACTGTTGCGATCTCATATACTTGT 58.093 37.500 0.00 0.00 0.00 3.16
335 336 5.750547 ACTGTTGCGATCTCATATACTTGTG 59.249 40.000 0.00 0.00 0.00 3.33
336 337 5.049828 TGTTGCGATCTCATATACTTGTGG 58.950 41.667 0.00 0.00 0.00 4.17
337 338 4.257267 TGCGATCTCATATACTTGTGGG 57.743 45.455 0.00 0.00 0.00 4.61
338 339 3.641436 TGCGATCTCATATACTTGTGGGT 59.359 43.478 0.00 0.00 0.00 4.51
339 340 4.100963 TGCGATCTCATATACTTGTGGGTT 59.899 41.667 0.00 0.00 0.00 4.11
340 341 5.303333 TGCGATCTCATATACTTGTGGGTTA 59.697 40.000 0.00 0.00 0.00 2.85
341 342 6.014584 TGCGATCTCATATACTTGTGGGTTAT 60.015 38.462 0.00 0.00 0.00 1.89
342 343 6.531948 GCGATCTCATATACTTGTGGGTTATC 59.468 42.308 0.00 0.00 0.00 1.75
343 344 7.602753 CGATCTCATATACTTGTGGGTTATCA 58.397 38.462 0.00 0.00 0.00 2.15
344 345 7.542477 CGATCTCATATACTTGTGGGTTATCAC 59.458 40.741 0.00 0.00 38.09 3.06
345 346 7.669089 TCTCATATACTTGTGGGTTATCACA 57.331 36.000 0.00 0.00 44.81 3.58
346 347 8.262601 TCTCATATACTTGTGGGTTATCACAT 57.737 34.615 0.00 0.00 45.63 3.21
347 348 8.367911 TCTCATATACTTGTGGGTTATCACATC 58.632 37.037 0.00 0.00 45.63 3.06
348 349 8.262601 TCATATACTTGTGGGTTATCACATCT 57.737 34.615 0.00 0.00 45.63 2.90
349 350 8.367911 TCATATACTTGTGGGTTATCACATCTC 58.632 37.037 0.00 0.00 45.63 2.75
350 351 6.814954 ATACTTGTGGGTTATCACATCTCT 57.185 37.500 0.00 0.00 45.63 3.10
351 352 5.091261 ACTTGTGGGTTATCACATCTCTC 57.909 43.478 0.00 0.00 45.63 3.20
352 353 4.780021 ACTTGTGGGTTATCACATCTCTCT 59.220 41.667 0.00 0.00 45.63 3.10
353 354 5.249393 ACTTGTGGGTTATCACATCTCTCTT 59.751 40.000 0.00 0.00 45.63 2.85
354 355 5.089970 TGTGGGTTATCACATCTCTCTTG 57.910 43.478 0.00 0.00 42.05 3.02
355 356 3.873952 GTGGGTTATCACATCTCTCTTGC 59.126 47.826 0.00 0.00 37.57 4.01
356 357 3.776969 TGGGTTATCACATCTCTCTTGCT 59.223 43.478 0.00 0.00 0.00 3.91
357 358 4.141846 TGGGTTATCACATCTCTCTTGCTC 60.142 45.833 0.00 0.00 0.00 4.26
358 359 4.100808 GGGTTATCACATCTCTCTTGCTCT 59.899 45.833 0.00 0.00 0.00 4.09
359 360 5.049167 GGTTATCACATCTCTCTTGCTCTG 58.951 45.833 0.00 0.00 0.00 3.35
360 361 2.669300 TCACATCTCTCTTGCTCTGC 57.331 50.000 0.00 0.00 0.00 4.26
361 362 2.177734 TCACATCTCTCTTGCTCTGCT 58.822 47.619 0.00 0.00 0.00 4.24
362 363 2.166050 TCACATCTCTCTTGCTCTGCTC 59.834 50.000 0.00 0.00 0.00 4.26
363 364 1.481772 ACATCTCTCTTGCTCTGCTCC 59.518 52.381 0.00 0.00 0.00 4.70
364 365 1.122227 ATCTCTCTTGCTCTGCTCCC 58.878 55.000 0.00 0.00 0.00 4.30
365 366 0.975040 TCTCTCTTGCTCTGCTCCCC 60.975 60.000 0.00 0.00 0.00 4.81
366 367 0.977108 CTCTCTTGCTCTGCTCCCCT 60.977 60.000 0.00 0.00 0.00 4.79
367 368 0.546267 TCTCTTGCTCTGCTCCCCTT 60.546 55.000 0.00 0.00 0.00 3.95
368 369 0.107752 CTCTTGCTCTGCTCCCCTTC 60.108 60.000 0.00 0.00 0.00 3.46
369 370 1.077858 CTTGCTCTGCTCCCCTTCC 60.078 63.158 0.00 0.00 0.00 3.46
370 371 2.549169 CTTGCTCTGCTCCCCTTCCC 62.549 65.000 0.00 0.00 0.00 3.97
371 372 2.690510 GCTCTGCTCCCCTTCCCT 60.691 66.667 0.00 0.00 0.00 4.20
372 373 1.383248 GCTCTGCTCCCCTTCCCTA 60.383 63.158 0.00 0.00 0.00 3.53
373 374 1.691195 GCTCTGCTCCCCTTCCCTAC 61.691 65.000 0.00 0.00 0.00 3.18
374 375 0.031616 CTCTGCTCCCCTTCCCTACT 60.032 60.000 0.00 0.00 0.00 2.57
375 376 0.032017 TCTGCTCCCCTTCCCTACTC 60.032 60.000 0.00 0.00 0.00 2.59
376 377 0.031616 CTGCTCCCCTTCCCTACTCT 60.032 60.000 0.00 0.00 0.00 3.24
377 378 0.325671 TGCTCCCCTTCCCTACTCTG 60.326 60.000 0.00 0.00 0.00 3.35
378 379 1.691195 GCTCCCCTTCCCTACTCTGC 61.691 65.000 0.00 0.00 0.00 4.26
379 380 0.031616 CTCCCCTTCCCTACTCTGCT 60.032 60.000 0.00 0.00 0.00 4.24
380 381 0.032017 TCCCCTTCCCTACTCTGCTC 60.032 60.000 0.00 0.00 0.00 4.26
381 382 1.395826 CCCCTTCCCTACTCTGCTCG 61.396 65.000 0.00 0.00 0.00 5.03
382 383 1.439644 CCTTCCCTACTCTGCTCGC 59.560 63.158 0.00 0.00 0.00 5.03
383 384 1.439644 CTTCCCTACTCTGCTCGCC 59.560 63.158 0.00 0.00 0.00 5.54
384 385 2.343163 CTTCCCTACTCTGCTCGCCG 62.343 65.000 0.00 0.00 0.00 6.46
385 386 3.141488 CCCTACTCTGCTCGCCGT 61.141 66.667 0.00 0.00 0.00 5.68
386 387 2.409651 CCTACTCTGCTCGCCGTC 59.590 66.667 0.00 0.00 0.00 4.79
387 388 2.023461 CTACTCTGCTCGCCGTCG 59.977 66.667 0.00 0.00 0.00 5.12
388 389 2.745100 TACTCTGCTCGCCGTCGT 60.745 61.111 0.00 0.00 36.96 4.34
389 390 2.634702 CTACTCTGCTCGCCGTCGTC 62.635 65.000 0.00 0.00 36.96 4.20
392 393 4.538283 CTGCTCGCCGTCGTCGAT 62.538 66.667 0.00 0.00 39.71 3.59
393 394 4.531912 TGCTCGCCGTCGTCGATC 62.532 66.667 0.00 0.00 39.71 3.69
395 396 4.609247 CTCGCCGTCGTCGATCCC 62.609 72.222 0.00 0.00 39.71 3.85
397 398 4.907034 CGCCGTCGTCGATCCCTG 62.907 72.222 2.98 0.00 39.71 4.45
398 399 3.823330 GCCGTCGTCGATCCCTGT 61.823 66.667 2.98 0.00 39.71 4.00
399 400 2.882876 CCGTCGTCGATCCCTGTT 59.117 61.111 2.98 0.00 39.71 3.16
400 401 1.226603 CCGTCGTCGATCCCTGTTC 60.227 63.158 2.98 0.00 39.71 3.18
401 402 1.582937 CGTCGTCGATCCCTGTTCG 60.583 63.158 0.00 0.00 39.71 3.95
402 403 1.872679 GTCGTCGATCCCTGTTCGC 60.873 63.158 0.00 0.00 36.56 4.70
403 404 2.582498 CGTCGATCCCTGTTCGCC 60.582 66.667 0.00 0.00 36.56 5.54
404 405 2.202892 GTCGATCCCTGTTCGCCC 60.203 66.667 0.00 0.00 36.56 6.13
405 406 2.363795 TCGATCCCTGTTCGCCCT 60.364 61.111 0.00 0.00 36.56 5.19
406 407 1.076559 TCGATCCCTGTTCGCCCTA 60.077 57.895 0.00 0.00 36.56 3.53
407 408 1.107538 TCGATCCCTGTTCGCCCTAG 61.108 60.000 0.00 0.00 36.56 3.02
408 409 1.749033 GATCCCTGTTCGCCCTAGG 59.251 63.158 0.06 0.06 0.00 3.02
410 411 2.687566 CCCTGTTCGCCCTAGGGT 60.688 66.667 28.96 0.00 45.00 4.34
411 412 2.584608 CCTGTTCGCCCTAGGGTG 59.415 66.667 32.35 32.35 46.45 4.61
412 413 2.291043 CCTGTTCGCCCTAGGGTGT 61.291 63.158 35.13 0.00 45.37 4.16
413 414 1.079127 CTGTTCGCCCTAGGGTGTG 60.079 63.158 35.13 22.39 45.37 3.82
414 415 1.534476 TGTTCGCCCTAGGGTGTGA 60.534 57.895 35.13 24.10 45.37 3.58
415 416 1.079336 GTTCGCCCTAGGGTGTGAC 60.079 63.158 35.13 29.20 45.37 3.67
434 435 4.565564 GTGACAACCGACAACCTGATATAC 59.434 45.833 0.00 0.00 0.00 1.47
468 469 6.961359 TCGTCATTAGTTTCACTAACCATG 57.039 37.500 0.00 0.00 42.78 3.66
486 487 1.300481 TGTCGTCATCACGCCAAAAA 58.700 45.000 0.00 0.00 46.28 1.94
569 571 4.299586 TGCTACCAACATGATGAGGAAA 57.700 40.909 13.81 3.24 0.00 3.13
583 585 1.091771 AGGAAATGTGCAGCGATCCG 61.092 55.000 0.00 0.00 32.22 4.18
653 662 1.451207 TTGTTCCTGCTGCGTGTGT 60.451 52.632 0.00 0.00 0.00 3.72
673 682 2.620585 GTTTCTGCTTGAAGGCTCTTGT 59.379 45.455 0.00 0.00 35.89 3.16
677 686 1.067516 TGCTTGAAGGCTCTTGTTTGC 59.932 47.619 0.00 0.00 0.00 3.68
787 800 3.448301 GCAATCAGGTTTTCATCCCATGA 59.552 43.478 0.00 0.00 37.55 3.07
886 899 4.760204 TCGGTAATATCTTGCTCGATCTGA 59.240 41.667 0.00 0.00 0.00 3.27
888 901 6.071896 TCGGTAATATCTTGCTCGATCTGAAT 60.072 38.462 0.00 0.00 0.00 2.57
965 978 2.039480 AGTAAAAACTCGACCCCTTCCC 59.961 50.000 0.00 0.00 0.00 3.97
1028 1332 0.394565 GGCGATATCTTGGCTCACCT 59.605 55.000 0.34 0.00 36.63 4.00
1035 1339 2.357034 TTGGCTCACCTTCGTCGC 60.357 61.111 0.00 0.00 36.63 5.19
1176 1482 3.132824 CCAGCAAAACCCCTCCAATTATC 59.867 47.826 0.00 0.00 0.00 1.75
1424 1745 3.790437 CCAGCCTCATCCACGCCT 61.790 66.667 0.00 0.00 0.00 5.52
1560 1883 0.107703 TCCATCTCCACACGCATTCC 60.108 55.000 0.00 0.00 0.00 3.01
1585 1909 3.670629 CTCTCCCCTCCTCGTGGCT 62.671 68.421 0.00 0.00 0.00 4.75
1586 1910 2.685380 CTCCCCTCCTCGTGGCTT 60.685 66.667 0.00 0.00 0.00 4.35
1593 1917 2.805353 CCTCGTGGCTTCGTCGTG 60.805 66.667 0.00 0.00 0.00 4.35
1594 1918 3.470567 CTCGTGGCTTCGTCGTGC 61.471 66.667 0.00 0.00 0.00 5.34
1634 1961 1.982226 TCCTAGATCTCGGAGGAGGAG 59.018 57.143 11.86 0.00 40.85 3.69
1785 2115 1.289982 TGGACGAGGAGGAGGAGGAT 61.290 60.000 0.00 0.00 0.00 3.24
2178 2539 5.886992 TCTGCTCGACGAATTGACTAATAA 58.113 37.500 0.00 0.00 0.00 1.40
2180 2541 5.041287 TGCTCGACGAATTGACTAATAAGG 58.959 41.667 0.00 0.00 0.00 2.69
2190 2551 7.905493 CGAATTGACTAATAAGGCTTTTGTCTC 59.095 37.037 4.45 0.00 30.01 3.36
2193 2554 6.407202 TGACTAATAAGGCTTTTGTCTCTCC 58.593 40.000 4.45 0.00 30.01 3.71
2311 2672 0.407139 AGGGCCAGACATTTGCTCTT 59.593 50.000 6.18 0.00 29.66 2.85
2376 2737 6.256321 GCAGATGTTTAATTTGCAGGTTATGG 59.744 38.462 0.00 0.00 34.99 2.74
2401 2762 6.959639 TTTGCTCTCTGGATAAAAACTTGT 57.040 33.333 0.00 0.00 0.00 3.16
2468 2829 7.976414 ATTCATATCCATTTTTGACAGGGAA 57.024 32.000 0.00 0.00 0.00 3.97
2486 2847 4.266714 GGGAACCGACCATGAAGAATTTA 58.733 43.478 0.00 0.00 40.86 1.40
2515 2876 1.790623 GCGACTGCTGAAAACGAAGTA 59.209 47.619 0.00 0.00 37.91 2.24
2527 2888 7.530861 GCTGAAAACGAAGTACAATTTGTAGAG 59.469 37.037 9.49 4.69 45.00 2.43
2620 2981 3.560068 TGAAAAGCGAACCAGAGAAGTTC 59.440 43.478 0.00 0.00 40.19 3.01
2653 3014 8.777865 TTGGTAAGTATCTAATATGCAGATGC 57.222 34.615 0.00 0.00 42.50 3.91
2685 3046 4.095946 TCCTTATTTGCATTCTGGCCTTT 58.904 39.130 3.32 0.00 0.00 3.11
2689 3050 4.563140 ATTTGCATTCTGGCCTTTCATT 57.437 36.364 3.32 0.00 0.00 2.57
2810 3172 3.633525 TGCTCATGCTTATCCATTTGGTC 59.366 43.478 0.00 0.00 40.48 4.02
2953 3315 7.174426 GCTTAACAAGTTCCCACTAATTACTGT 59.826 37.037 0.00 0.00 30.68 3.55
3040 3405 7.559897 TCCCAGCCTTTCTAAATATTAACAAGG 59.440 37.037 9.68 9.68 33.72 3.61
3316 3683 0.034670 GCCCTCTGCTCTGTCCATTT 60.035 55.000 0.00 0.00 36.87 2.32
3345 3712 9.013490 GTCATATCATGCAAATGACTAAAACAC 57.987 33.333 19.46 0.07 43.90 3.32
3504 3871 9.872684 ATTCTGGAGTGATGTTTCCATATTATT 57.127 29.630 0.00 0.00 42.32 1.40
3568 3935 2.289819 TGGTGGGAGTTGTTTCCGTATC 60.290 50.000 0.00 0.00 38.17 2.24
3575 3942 5.352293 GGGAGTTGTTTCCGTATCGTTTAAT 59.648 40.000 0.00 0.00 38.17 1.40
3581 3948 9.925268 GTTGTTTCCGTATCGTTTAATGATATT 57.075 29.630 9.72 0.00 29.71 1.28
3639 4006 3.127548 AGCATTTGATACGAGCAAAGGTG 59.872 43.478 10.30 4.51 38.75 4.00
3793 4160 2.795329 AGCCTTTTGGATGGTACACTG 58.205 47.619 0.00 0.00 44.07 3.66
3972 4339 5.683876 ACTCCTGACATGCATACTTAGTT 57.316 39.130 0.00 0.00 0.00 2.24
4044 4412 6.509418 TTGTAATTAGTTTCCTGGCATGTC 57.491 37.500 0.00 0.00 0.00 3.06
4080 4450 1.672898 CCACCCACCATTTTGCAGG 59.327 57.895 0.00 0.00 0.00 4.85
4146 4516 1.354031 TCCTGCAAAGCCCTCACAATA 59.646 47.619 0.00 0.00 0.00 1.90
4148 4518 2.762327 CCTGCAAAGCCCTCACAATATT 59.238 45.455 0.00 0.00 0.00 1.28
4175 4545 6.778069 TCCTCGAGGTATTTGATCTTACTCAT 59.222 38.462 30.17 0.00 36.34 2.90
4219 4589 9.952030 TTTGTATACTCCAATACTCACAATTCA 57.048 29.630 4.17 0.00 34.13 2.57
4264 4634 3.309296 TCTATCCAAGATCTCACACCCC 58.691 50.000 0.00 0.00 0.00 4.95
4384 4755 4.233789 TGGACAATCTTAAATTTGCACGC 58.766 39.130 0.00 0.00 0.00 5.34
4430 4801 5.913137 TCCAAAATTGCAGGTAATTCGAT 57.087 34.783 0.00 0.00 30.33 3.59
4520 4891 9.017509 CAGTCATGCCATCCATTAAATTATACT 57.982 33.333 0.00 0.00 29.71 2.12
4956 5433 6.153756 GGTGAGTTTGTTTGTTGTTTACTGT 58.846 36.000 0.00 0.00 0.00 3.55
5061 5539 6.446781 CATGCATGGACTTTCAAAGATAGT 57.553 37.500 19.40 0.00 0.00 2.12
5068 5546 5.997746 TGGACTTTCAAAGATAGTTCTGTGG 59.002 40.000 3.49 0.00 37.73 4.17
5105 5583 9.247861 AGCAGAAAAATGACTTCCTATATGTTT 57.752 29.630 0.00 0.00 0.00 2.83
5145 5623 1.825090 TTGCTGCCACTTATGACTGG 58.175 50.000 0.00 0.00 0.00 4.00
5255 5741 6.402222 TGAAAGAGATCTGAAGGTTTCTAGC 58.598 40.000 0.00 0.00 0.00 3.42
5292 5778 1.673168 CTGGAACCTGGAAGCATAGC 58.327 55.000 0.00 0.00 0.00 2.97
5293 5779 0.255890 TGGAACCTGGAAGCATAGCC 59.744 55.000 0.00 0.00 0.00 3.93
5331 5817 8.783093 TGCTGAATGAATTAATCTAATAACCCG 58.217 33.333 0.00 0.00 0.00 5.28
5332 5818 8.784043 GCTGAATGAATTAATCTAATAACCCGT 58.216 33.333 0.00 0.00 0.00 5.28
5462 5950 3.810373 GGTACGTCTGCTGAAACAAATG 58.190 45.455 0.00 0.00 0.00 2.32
5464 5952 1.949525 ACGTCTGCTGAAACAAATGCT 59.050 42.857 0.00 0.00 0.00 3.79
5467 5955 4.153986 CGTCTGCTGAAACAAATGCTAAG 58.846 43.478 0.00 0.00 0.00 2.18
5494 5982 1.821216 AAGTTACCCTTCGCCATGTG 58.179 50.000 0.00 0.00 0.00 3.21
5508 5996 7.817478 CCTTCGCCATGTGTTAGTGATATATTA 59.183 37.037 0.00 0.00 0.00 0.98
5577 6065 2.611292 CTGAAAGACATGGCGAGATTCC 59.389 50.000 0.00 0.00 34.07 3.01
5637 6158 4.273148 GAGAAGCTCCAAACTCCTAACA 57.727 45.455 0.00 0.00 0.00 2.41
5639 6160 5.248380 AGAAGCTCCAAACTCCTAACATT 57.752 39.130 0.00 0.00 0.00 2.71
5707 6229 1.136147 CTCGTTCAAGCATGCTGGC 59.864 57.895 23.48 10.70 0.00 4.85
5788 6339 1.074872 GGTCACGGTTACGCAGTAGC 61.075 60.000 0.00 0.00 46.93 3.58
5891 6493 6.162079 ACTCTAATATCGGATGTTGCATGAG 58.838 40.000 9.88 12.37 0.00 2.90
5914 6564 0.316204 CAAAGCTCAAGCAGGTTGGG 59.684 55.000 12.42 10.28 42.26 4.12
5922 6572 3.681593 TCAAGCAGGTTGGGTATGTTAC 58.318 45.455 12.42 0.00 36.71 2.50
5935 6585 6.533730 TGGGTATGTTACATGAGAATGATCC 58.466 40.000 8.26 0.00 0.00 3.36
5957 6608 9.899226 GATCCCAATTTATTTTGCAGTACTATC 57.101 33.333 0.00 0.00 0.00 2.08
5978 6629 9.959721 ACTATCTATTGGTTAGAAAATGTGTGT 57.040 29.630 0.00 0.00 40.32 3.72
6008 6689 3.255642 GGCTTCAAAGTTCCACTGCATTA 59.744 43.478 0.00 0.00 0.00 1.90
6096 6818 1.087501 GACCAGGACGAAATGAAGGC 58.912 55.000 0.00 0.00 0.00 4.35
6116 6842 6.350629 AGGCAAATAGAACAAAGCTCAAAT 57.649 33.333 0.00 0.00 0.00 2.32
6151 6877 4.967084 TGGTTTAGTTCTACAGGCTCAA 57.033 40.909 0.00 0.00 0.00 3.02
6152 6878 4.894784 TGGTTTAGTTCTACAGGCTCAAG 58.105 43.478 0.00 0.00 0.00 3.02
6153 6879 4.591498 TGGTTTAGTTCTACAGGCTCAAGA 59.409 41.667 0.00 0.00 0.00 3.02
6154 6880 5.071250 TGGTTTAGTTCTACAGGCTCAAGAA 59.929 40.000 4.36 4.36 0.00 2.52
6166 6892 2.353109 GGCTCAAGAACAAAATCAGGCC 60.353 50.000 0.00 0.00 0.00 5.19
6174 6900 7.989741 TCAAGAACAAAATCAGGCCAAATTTTA 59.010 29.630 21.07 7.45 34.25 1.52
6382 7108 2.180276 CCCCCTCTTATACCCATCTCG 58.820 57.143 0.00 0.00 0.00 4.04
6423 7149 0.030908 GAGCGAGGTGGGACTAATCG 59.969 60.000 0.00 0.00 36.51 3.34
6430 7156 1.600107 TGGGACTAATCGCACCACC 59.400 57.895 0.00 0.00 42.48 4.61
6432 7158 0.462047 GGGACTAATCGCACCACCAG 60.462 60.000 0.00 0.00 37.71 4.00
6452 7180 4.555709 AAGCCAACCGACGCACCA 62.556 61.111 0.00 0.00 0.00 4.17
6455 7183 4.920112 CCAACCGACGCACCACCA 62.920 66.667 0.00 0.00 0.00 4.17
6456 7184 3.645975 CAACCGACGCACCACCAC 61.646 66.667 0.00 0.00 0.00 4.16
6478 7209 4.020617 CGGACAGGCAAGCCAGGA 62.021 66.667 14.40 0.00 38.92 3.86
6484 7215 3.435186 GGCAAGCCAGGAAGCGAC 61.435 66.667 6.14 0.00 38.01 5.19
6547 7278 0.255890 TTCAGTGGGCCTGGATAAGC 59.744 55.000 4.53 0.00 41.83 3.09
6553 7284 0.538287 GGGCCTGGATAAGCATCACC 60.538 60.000 0.84 0.00 32.32 4.02
6589 7320 3.612371 GACTCACCGAGCGACGCTT 62.612 63.158 25.30 5.61 39.88 4.68
6590 7321 2.430921 CTCACCGAGCGACGCTTT 60.431 61.111 25.30 8.80 39.88 3.51
6594 7325 1.007336 CACCGAGCGACGCTTTACTT 61.007 55.000 25.30 0.00 39.88 2.24
6595 7326 0.319297 ACCGAGCGACGCTTTACTTT 60.319 50.000 25.30 0.00 39.88 2.66
6597 7328 1.319669 CCGAGCGACGCTTTACTTTAC 59.680 52.381 25.30 7.33 39.88 2.01
6598 7329 2.248487 CGAGCGACGCTTTACTTTACT 58.752 47.619 25.30 0.00 39.88 2.24
6599 7330 2.275767 CGAGCGACGCTTTACTTTACTC 59.724 50.000 25.30 6.06 39.88 2.59
6600 7331 2.597748 GAGCGACGCTTTACTTTACTCC 59.402 50.000 25.30 2.14 39.88 3.85
6601 7332 2.029649 AGCGACGCTTTACTTTACTCCA 60.030 45.455 18.46 0.00 33.89 3.86
6602 7333 2.733026 GCGACGCTTTACTTTACTCCAA 59.267 45.455 13.73 0.00 0.00 3.53
6603 7334 3.181533 GCGACGCTTTACTTTACTCCAAG 60.182 47.826 13.73 0.00 0.00 3.61
6604 7335 4.232221 CGACGCTTTACTTTACTCCAAGA 58.768 43.478 0.00 0.00 0.00 3.02
6605 7336 4.682860 CGACGCTTTACTTTACTCCAAGAA 59.317 41.667 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.277345 GGATGCGGTTTATCATGTAACAGTC 60.277 44.000 0.00 0.00 0.00 3.51
1 2 4.574828 GGATGCGGTTTATCATGTAACAGT 59.425 41.667 0.00 0.00 0.00 3.55
2 3 4.318760 CGGATGCGGTTTATCATGTAACAG 60.319 45.833 0.00 0.00 0.00 3.16
3 4 3.558006 CGGATGCGGTTTATCATGTAACA 59.442 43.478 0.00 0.00 0.00 2.41
4 5 3.059188 CCGGATGCGGTTTATCATGTAAC 60.059 47.826 18.74 0.00 0.00 2.50
5 6 3.135225 CCGGATGCGGTTTATCATGTAA 58.865 45.455 18.74 0.00 0.00 2.41
6 7 2.761559 CCGGATGCGGTTTATCATGTA 58.238 47.619 18.74 0.00 0.00 2.29
7 8 1.593196 CCGGATGCGGTTTATCATGT 58.407 50.000 18.74 0.00 0.00 3.21
8 9 0.238289 GCCGGATGCGGTTTATCATG 59.762 55.000 27.20 0.00 0.00 3.07
9 10 0.179032 TGCCGGATGCGGTTTATCAT 60.179 50.000 27.20 0.00 45.60 2.45
10 11 0.179032 ATGCCGGATGCGGTTTATCA 60.179 50.000 27.20 15.97 45.60 2.15
11 12 1.803334 TATGCCGGATGCGGTTTATC 58.197 50.000 27.20 10.37 45.60 1.75
12 13 2.264005 TTATGCCGGATGCGGTTTAT 57.736 45.000 27.20 19.63 45.60 1.40
13 14 2.264005 ATTATGCCGGATGCGGTTTA 57.736 45.000 27.20 15.55 45.60 2.01
14 15 1.336755 GAATTATGCCGGATGCGGTTT 59.663 47.619 27.20 16.58 45.60 3.27
15 16 0.951558 GAATTATGCCGGATGCGGTT 59.048 50.000 27.20 16.94 45.60 4.44
16 17 0.108585 AGAATTATGCCGGATGCGGT 59.891 50.000 27.20 10.89 45.60 5.68
17 18 0.798776 GAGAATTATGCCGGATGCGG 59.201 55.000 22.84 22.84 45.60 5.69
18 19 1.800805 AGAGAATTATGCCGGATGCG 58.199 50.000 5.05 0.00 45.60 4.73
19 20 4.331168 GTGATAGAGAATTATGCCGGATGC 59.669 45.833 5.05 0.00 41.77 3.91
20 21 4.872691 GGTGATAGAGAATTATGCCGGATG 59.127 45.833 5.05 0.00 0.00 3.51
21 22 4.382040 CGGTGATAGAGAATTATGCCGGAT 60.382 45.833 5.05 0.00 33.87 4.18
22 23 3.056821 CGGTGATAGAGAATTATGCCGGA 60.057 47.826 5.05 0.00 33.87 5.14
23 24 3.056821 TCGGTGATAGAGAATTATGCCGG 60.057 47.826 0.00 0.00 37.55 6.13
24 25 4.174411 TCGGTGATAGAGAATTATGCCG 57.826 45.455 0.00 0.00 38.20 5.69
25 26 5.112686 GGATCGGTGATAGAGAATTATGCC 58.887 45.833 0.00 0.00 0.00 4.40
26 27 5.724328 TGGATCGGTGATAGAGAATTATGC 58.276 41.667 0.00 0.00 0.00 3.14
27 28 7.201591 GCATTGGATCGGTGATAGAGAATTATG 60.202 40.741 0.00 0.00 0.00 1.90
28 29 6.820656 GCATTGGATCGGTGATAGAGAATTAT 59.179 38.462 0.00 0.00 0.00 1.28
29 30 6.166279 GCATTGGATCGGTGATAGAGAATTA 58.834 40.000 0.00 0.00 0.00 1.40
30 31 4.999950 GCATTGGATCGGTGATAGAGAATT 59.000 41.667 0.00 0.00 0.00 2.17
31 32 4.564406 GGCATTGGATCGGTGATAGAGAAT 60.564 45.833 0.00 0.00 0.00 2.40
32 33 3.244215 GGCATTGGATCGGTGATAGAGAA 60.244 47.826 0.00 0.00 0.00 2.87
33 34 2.300152 GGCATTGGATCGGTGATAGAGA 59.700 50.000 0.00 0.00 0.00 3.10
34 35 2.301296 AGGCATTGGATCGGTGATAGAG 59.699 50.000 0.00 0.00 0.00 2.43
35 36 2.329267 AGGCATTGGATCGGTGATAGA 58.671 47.619 0.00 0.00 0.00 1.98
36 37 2.847327 AGGCATTGGATCGGTGATAG 57.153 50.000 0.00 0.00 0.00 2.08
37 38 3.837731 TCATAGGCATTGGATCGGTGATA 59.162 43.478 0.00 0.00 0.00 2.15
38 39 2.639347 TCATAGGCATTGGATCGGTGAT 59.361 45.455 0.00 0.00 0.00 3.06
39 40 2.037641 CTCATAGGCATTGGATCGGTGA 59.962 50.000 0.00 0.00 0.00 4.02
40 41 2.420642 CTCATAGGCATTGGATCGGTG 58.579 52.381 0.00 0.00 0.00 4.94
41 42 1.271054 GCTCATAGGCATTGGATCGGT 60.271 52.381 0.00 0.00 0.00 4.69
42 43 1.002888 AGCTCATAGGCATTGGATCGG 59.997 52.381 0.00 0.00 34.17 4.18
43 44 2.469274 AGCTCATAGGCATTGGATCG 57.531 50.000 0.00 0.00 34.17 3.69
44 45 4.581824 TGAAAAGCTCATAGGCATTGGATC 59.418 41.667 0.00 0.00 34.17 3.36
45 46 4.340381 GTGAAAAGCTCATAGGCATTGGAT 59.660 41.667 0.00 0.00 36.14 3.41
46 47 3.696051 GTGAAAAGCTCATAGGCATTGGA 59.304 43.478 0.00 0.00 36.14 3.53
47 48 3.444742 TGTGAAAAGCTCATAGGCATTGG 59.555 43.478 0.00 0.00 36.14 3.16
48 49 4.707030 TGTGAAAAGCTCATAGGCATTG 57.293 40.909 0.00 0.00 36.14 2.82
49 50 7.069085 ACAATATGTGAAAAGCTCATAGGCATT 59.931 33.333 0.00 0.00 36.66 3.56
50 51 6.548622 ACAATATGTGAAAAGCTCATAGGCAT 59.451 34.615 0.00 0.00 36.66 4.40
51 52 5.887598 ACAATATGTGAAAAGCTCATAGGCA 59.112 36.000 0.00 0.00 36.66 4.75
52 53 6.382869 ACAATATGTGAAAAGCTCATAGGC 57.617 37.500 0.00 0.00 36.66 3.93
53 54 8.218338 AGAACAATATGTGAAAAGCTCATAGG 57.782 34.615 0.00 0.00 36.66 2.57
54 55 8.341173 GGAGAACAATATGTGAAAAGCTCATAG 58.659 37.037 0.00 0.00 36.66 2.23
55 56 7.011389 CGGAGAACAATATGTGAAAAGCTCATA 59.989 37.037 0.00 0.00 37.37 2.15
56 57 6.183360 CGGAGAACAATATGTGAAAAGCTCAT 60.183 38.462 0.00 0.00 36.14 2.90
57 58 5.122239 CGGAGAACAATATGTGAAAAGCTCA 59.878 40.000 0.00 0.00 0.00 4.26
58 59 5.563842 CGGAGAACAATATGTGAAAAGCTC 58.436 41.667 0.00 0.00 0.00 4.09
59 60 4.142600 GCGGAGAACAATATGTGAAAAGCT 60.143 41.667 0.00 0.00 0.00 3.74
60 61 4.098416 GCGGAGAACAATATGTGAAAAGC 58.902 43.478 0.00 0.00 0.00 3.51
61 62 5.551760 AGCGGAGAACAATATGTGAAAAG 57.448 39.130 0.00 0.00 0.00 2.27
62 63 5.957842 AAGCGGAGAACAATATGTGAAAA 57.042 34.783 0.00 0.00 0.00 2.29
63 64 7.624360 AATAAGCGGAGAACAATATGTGAAA 57.376 32.000 0.00 0.00 0.00 2.69
64 65 7.624360 AAATAAGCGGAGAACAATATGTGAA 57.376 32.000 0.00 0.00 0.00 3.18
65 66 7.985184 AGTAAATAAGCGGAGAACAATATGTGA 59.015 33.333 0.00 0.00 0.00 3.58
66 67 8.142994 AGTAAATAAGCGGAGAACAATATGTG 57.857 34.615 0.00 0.00 0.00 3.21
67 68 8.732746 AAGTAAATAAGCGGAGAACAATATGT 57.267 30.769 0.00 0.00 0.00 2.29
70 71 8.671028 GGAAAAGTAAATAAGCGGAGAACAATA 58.329 33.333 0.00 0.00 0.00 1.90
71 72 7.535997 GGAAAAGTAAATAAGCGGAGAACAAT 58.464 34.615 0.00 0.00 0.00 2.71
72 73 6.347888 CGGAAAAGTAAATAAGCGGAGAACAA 60.348 38.462 0.00 0.00 0.00 2.83
73 74 5.121142 CGGAAAAGTAAATAAGCGGAGAACA 59.879 40.000 0.00 0.00 0.00 3.18
74 75 5.121298 ACGGAAAAGTAAATAAGCGGAGAAC 59.879 40.000 0.00 0.00 0.00 3.01
75 76 5.240121 ACGGAAAAGTAAATAAGCGGAGAA 58.760 37.500 0.00 0.00 0.00 2.87
76 77 4.824289 ACGGAAAAGTAAATAAGCGGAGA 58.176 39.130 0.00 0.00 0.00 3.71
77 78 5.321516 CAACGGAAAAGTAAATAAGCGGAG 58.678 41.667 0.00 0.00 0.00 4.63
78 79 4.378666 GCAACGGAAAAGTAAATAAGCGGA 60.379 41.667 0.00 0.00 0.00 5.54
79 80 3.849708 GCAACGGAAAAGTAAATAAGCGG 59.150 43.478 0.00 0.00 0.00 5.52
80 81 4.719040 AGCAACGGAAAAGTAAATAAGCG 58.281 39.130 0.00 0.00 0.00 4.68
81 82 6.839033 AGTAGCAACGGAAAAGTAAATAAGC 58.161 36.000 0.00 0.00 0.00 3.09
118 119 9.402320 AGCAAAAGTAATATTTTTGGGTTTTGT 57.598 25.926 18.29 2.39 42.76 2.83
121 122 9.496873 GGTAGCAAAAGTAATATTTTTGGGTTT 57.503 29.630 18.29 0.00 42.76 3.27
122 123 7.815549 CGGTAGCAAAAGTAATATTTTTGGGTT 59.184 33.333 18.29 0.13 42.76 4.11
123 124 7.039574 ACGGTAGCAAAAGTAATATTTTTGGGT 60.040 33.333 18.29 9.97 42.76 4.51
124 125 7.317390 ACGGTAGCAAAAGTAATATTTTTGGG 58.683 34.615 18.29 0.30 42.76 4.12
125 126 8.751302 AACGGTAGCAAAAGTAATATTTTTGG 57.249 30.769 18.29 7.50 42.76 3.28
127 128 9.844790 GGTAACGGTAGCAAAAGTAATATTTTT 57.155 29.630 4.46 0.00 30.01 1.94
148 149 7.201470 GCAAAGTAGTATGGAAGTAACGGTAAC 60.201 40.741 0.00 0.00 0.00 2.50
149 150 6.813152 GCAAAGTAGTATGGAAGTAACGGTAA 59.187 38.462 0.00 0.00 0.00 2.85
150 151 6.153340 AGCAAAGTAGTATGGAAGTAACGGTA 59.847 38.462 0.00 0.00 0.00 4.02
151 152 5.046807 AGCAAAGTAGTATGGAAGTAACGGT 60.047 40.000 0.00 0.00 0.00 4.83
152 153 5.416947 AGCAAAGTAGTATGGAAGTAACGG 58.583 41.667 0.00 0.00 0.00 4.44
153 154 7.256286 AGTAGCAAAGTAGTATGGAAGTAACG 58.744 38.462 0.00 0.00 0.00 3.18
188 189 9.060347 CACACCTGATAACTTAATATCTGCAAT 57.940 33.333 0.00 0.00 34.14 3.56
189 190 7.498900 CCACACCTGATAACTTAATATCTGCAA 59.501 37.037 0.00 0.00 34.14 4.08
190 191 6.992123 CCACACCTGATAACTTAATATCTGCA 59.008 38.462 0.00 0.00 34.14 4.41
191 192 6.992715 ACCACACCTGATAACTTAATATCTGC 59.007 38.462 0.00 0.00 34.14 4.26
192 193 8.830580 CAACCACACCTGATAACTTAATATCTG 58.169 37.037 0.00 0.00 34.14 2.90
193 194 8.768397 TCAACCACACCTGATAACTTAATATCT 58.232 33.333 0.00 0.00 34.14 1.98
194 195 8.958119 TCAACCACACCTGATAACTTAATATC 57.042 34.615 0.00 0.00 33.71 1.63
195 196 9.920946 ATTCAACCACACCTGATAACTTAATAT 57.079 29.630 0.00 0.00 0.00 1.28
196 197 9.747898 AATTCAACCACACCTGATAACTTAATA 57.252 29.630 0.00 0.00 0.00 0.98
197 198 8.522830 CAATTCAACCACACCTGATAACTTAAT 58.477 33.333 0.00 0.00 0.00 1.40
198 199 7.721842 TCAATTCAACCACACCTGATAACTTAA 59.278 33.333 0.00 0.00 0.00 1.85
199 200 7.174253 GTCAATTCAACCACACCTGATAACTTA 59.826 37.037 0.00 0.00 0.00 2.24
200 201 6.016276 GTCAATTCAACCACACCTGATAACTT 60.016 38.462 0.00 0.00 0.00 2.66
201 202 5.473504 GTCAATTCAACCACACCTGATAACT 59.526 40.000 0.00 0.00 0.00 2.24
202 203 5.240623 TGTCAATTCAACCACACCTGATAAC 59.759 40.000 0.00 0.00 0.00 1.89
203 204 5.380900 TGTCAATTCAACCACACCTGATAA 58.619 37.500 0.00 0.00 0.00 1.75
204 205 4.979335 TGTCAATTCAACCACACCTGATA 58.021 39.130 0.00 0.00 0.00 2.15
205 206 3.831323 TGTCAATTCAACCACACCTGAT 58.169 40.909 0.00 0.00 0.00 2.90
206 207 3.289407 TGTCAATTCAACCACACCTGA 57.711 42.857 0.00 0.00 0.00 3.86
207 208 3.381272 AGTTGTCAATTCAACCACACCTG 59.619 43.478 6.44 0.00 45.90 4.00
208 209 3.631250 AGTTGTCAATTCAACCACACCT 58.369 40.909 6.44 0.00 45.90 4.00
209 210 3.380004 TGAGTTGTCAATTCAACCACACC 59.620 43.478 8.22 0.00 45.90 4.16
210 211 4.630894 TGAGTTGTCAATTCAACCACAC 57.369 40.909 8.22 0.00 45.90 3.82
211 212 4.992688 GTTGAGTTGTCAATTCAACCACA 58.007 39.130 29.81 8.46 46.35 4.17
217 218 9.778741 AGTATTAGAAGTTGAGTTGTCAATTCA 57.221 29.630 6.67 6.67 44.58 2.57
220 221 9.778741 TCAAGTATTAGAAGTTGAGTTGTCAAT 57.221 29.630 0.00 0.00 44.58 2.57
221 222 9.261180 CTCAAGTATTAGAAGTTGAGTTGTCAA 57.739 33.333 11.54 0.00 45.66 3.18
222 223 8.818141 CTCAAGTATTAGAAGTTGAGTTGTCA 57.182 34.615 11.54 0.00 45.66 3.58
238 239 8.907885 GGAAGCCAAAGAATATTCTCAAGTATT 58.092 33.333 18.19 9.34 36.28 1.89
239 240 7.503902 GGGAAGCCAAAGAATATTCTCAAGTAT 59.496 37.037 18.19 4.69 36.28 2.12
240 241 6.828785 GGGAAGCCAAAGAATATTCTCAAGTA 59.171 38.462 18.19 0.00 36.28 2.24
241 242 5.654209 GGGAAGCCAAAGAATATTCTCAAGT 59.346 40.000 18.19 0.00 36.28 3.16
242 243 5.890419 AGGGAAGCCAAAGAATATTCTCAAG 59.110 40.000 18.19 10.54 36.28 3.02
243 244 5.831103 AGGGAAGCCAAAGAATATTCTCAA 58.169 37.500 18.19 0.00 36.28 3.02
244 245 5.456921 AGGGAAGCCAAAGAATATTCTCA 57.543 39.130 18.19 0.00 36.28 3.27
245 246 5.654209 ACAAGGGAAGCCAAAGAATATTCTC 59.346 40.000 18.19 6.14 36.28 2.87
246 247 5.420104 CACAAGGGAAGCCAAAGAATATTCT 59.580 40.000 12.37 12.37 39.74 2.40
247 248 5.185828 ACACAAGGGAAGCCAAAGAATATTC 59.814 40.000 7.41 7.41 0.00 1.75
248 249 5.086621 ACACAAGGGAAGCCAAAGAATATT 58.913 37.500 0.00 0.00 0.00 1.28
249 250 4.677182 ACACAAGGGAAGCCAAAGAATAT 58.323 39.130 0.00 0.00 0.00 1.28
250 251 4.079253 GACACAAGGGAAGCCAAAGAATA 58.921 43.478 0.00 0.00 0.00 1.75
251 252 2.893489 GACACAAGGGAAGCCAAAGAAT 59.107 45.455 0.00 0.00 0.00 2.40
252 253 2.306847 GACACAAGGGAAGCCAAAGAA 58.693 47.619 0.00 0.00 0.00 2.52
253 254 1.813862 CGACACAAGGGAAGCCAAAGA 60.814 52.381 0.00 0.00 0.00 2.52
254 255 0.593128 CGACACAAGGGAAGCCAAAG 59.407 55.000 0.00 0.00 0.00 2.77
255 256 0.181587 TCGACACAAGGGAAGCCAAA 59.818 50.000 0.00 0.00 0.00 3.28
256 257 0.181587 TTCGACACAAGGGAAGCCAA 59.818 50.000 0.00 0.00 0.00 4.52
257 258 0.400213 ATTCGACACAAGGGAAGCCA 59.600 50.000 0.00 0.00 0.00 4.75
258 259 1.087501 GATTCGACACAAGGGAAGCC 58.912 55.000 0.00 0.00 0.00 4.35
259 260 1.808411 TGATTCGACACAAGGGAAGC 58.192 50.000 0.00 0.00 0.00 3.86
260 261 6.494893 TTTATTGATTCGACACAAGGGAAG 57.505 37.500 8.90 0.00 0.00 3.46
261 262 7.461182 AATTTATTGATTCGACACAAGGGAA 57.539 32.000 8.90 4.95 0.00 3.97
262 263 7.312154 CAAATTTATTGATTCGACACAAGGGA 58.688 34.615 8.90 0.00 0.00 4.20
263 264 6.531240 CCAAATTTATTGATTCGACACAAGGG 59.469 38.462 8.90 0.00 0.00 3.95
264 265 6.531240 CCCAAATTTATTGATTCGACACAAGG 59.469 38.462 8.90 3.91 0.00 3.61
265 266 7.090173 ACCCAAATTTATTGATTCGACACAAG 58.910 34.615 8.90 0.00 0.00 3.16
266 267 6.987386 ACCCAAATTTATTGATTCGACACAA 58.013 32.000 6.03 6.03 0.00 3.33
267 268 6.582677 ACCCAAATTTATTGATTCGACACA 57.417 33.333 0.00 0.00 0.00 3.72
268 269 7.087639 TCAACCCAAATTTATTGATTCGACAC 58.912 34.615 7.33 0.00 0.00 3.67
269 270 7.220741 TCAACCCAAATTTATTGATTCGACA 57.779 32.000 7.33 0.00 0.00 4.35
270 271 8.702163 ATTCAACCCAAATTTATTGATTCGAC 57.298 30.769 10.73 0.00 31.45 4.20
271 272 9.796120 GTATTCAACCCAAATTTATTGATTCGA 57.204 29.630 10.73 0.00 31.45 3.71
272 273 9.801873 AGTATTCAACCCAAATTTATTGATTCG 57.198 29.630 10.73 0.00 31.45 3.34
288 289 3.294214 TCCGAGGGTAGAGTATTCAACC 58.706 50.000 0.00 0.00 0.00 3.77
289 290 4.996788 TTCCGAGGGTAGAGTATTCAAC 57.003 45.455 0.00 0.00 0.00 3.18
290 291 5.021458 AGTTTCCGAGGGTAGAGTATTCAA 58.979 41.667 0.00 0.00 0.00 2.69
291 292 4.401519 CAGTTTCCGAGGGTAGAGTATTCA 59.598 45.833 0.00 0.00 0.00 2.57
292 293 4.401837 ACAGTTTCCGAGGGTAGAGTATTC 59.598 45.833 0.00 0.00 0.00 1.75
293 294 4.351127 ACAGTTTCCGAGGGTAGAGTATT 58.649 43.478 0.00 0.00 0.00 1.89
294 295 3.978610 ACAGTTTCCGAGGGTAGAGTAT 58.021 45.455 0.00 0.00 0.00 2.12
295 296 3.446442 ACAGTTTCCGAGGGTAGAGTA 57.554 47.619 0.00 0.00 0.00 2.59
296 297 2.299297 CAACAGTTTCCGAGGGTAGAGT 59.701 50.000 0.00 0.00 0.00 3.24
297 298 2.931320 GCAACAGTTTCCGAGGGTAGAG 60.931 54.545 0.00 0.00 0.00 2.43
298 299 1.001633 GCAACAGTTTCCGAGGGTAGA 59.998 52.381 0.00 0.00 0.00 2.59
299 300 1.439679 GCAACAGTTTCCGAGGGTAG 58.560 55.000 0.00 0.00 0.00 3.18
300 301 0.320073 CGCAACAGTTTCCGAGGGTA 60.320 55.000 0.00 0.00 0.00 3.69
301 302 1.597027 CGCAACAGTTTCCGAGGGT 60.597 57.895 0.00 0.00 0.00 4.34
302 303 0.673644 ATCGCAACAGTTTCCGAGGG 60.674 55.000 10.56 0.00 32.86 4.30
303 304 0.721718 GATCGCAACAGTTTCCGAGG 59.278 55.000 10.56 0.00 32.86 4.63
304 305 1.656095 GAGATCGCAACAGTTTCCGAG 59.344 52.381 10.56 0.00 32.86 4.63
305 306 1.000394 TGAGATCGCAACAGTTTCCGA 60.000 47.619 0.00 7.95 0.00 4.55
306 307 1.428448 TGAGATCGCAACAGTTTCCG 58.572 50.000 0.00 0.00 0.00 4.30
307 308 5.986135 AGTATATGAGATCGCAACAGTTTCC 59.014 40.000 2.39 0.00 0.00 3.13
308 309 7.010552 ACAAGTATATGAGATCGCAACAGTTTC 59.989 37.037 2.39 0.00 0.00 2.78
309 310 6.818644 ACAAGTATATGAGATCGCAACAGTTT 59.181 34.615 2.39 0.00 0.00 2.66
310 311 6.256539 CACAAGTATATGAGATCGCAACAGTT 59.743 38.462 2.39 0.00 0.00 3.16
311 312 5.750547 CACAAGTATATGAGATCGCAACAGT 59.249 40.000 2.39 0.00 0.00 3.55
312 313 5.176406 CCACAAGTATATGAGATCGCAACAG 59.824 44.000 2.39 0.00 0.00 3.16
313 314 5.049828 CCACAAGTATATGAGATCGCAACA 58.950 41.667 2.39 0.00 0.00 3.33
314 315 4.449068 CCCACAAGTATATGAGATCGCAAC 59.551 45.833 2.39 0.00 0.00 4.17
315 316 4.100963 ACCCACAAGTATATGAGATCGCAA 59.899 41.667 2.39 0.00 0.00 4.85
316 317 3.641436 ACCCACAAGTATATGAGATCGCA 59.359 43.478 0.28 0.28 0.00 5.10
317 318 4.258702 ACCCACAAGTATATGAGATCGC 57.741 45.455 0.00 0.00 0.00 4.58
318 319 7.542477 GTGATAACCCACAAGTATATGAGATCG 59.458 40.741 0.00 0.00 37.04 3.69
319 320 8.367911 TGTGATAACCCACAAGTATATGAGATC 58.632 37.037 0.00 0.00 43.32 2.75
320 321 8.262601 TGTGATAACCCACAAGTATATGAGAT 57.737 34.615 0.00 0.00 43.32 2.75
321 322 7.669089 TGTGATAACCCACAAGTATATGAGA 57.331 36.000 0.00 0.00 43.32 3.27
333 334 3.873952 GCAAGAGAGATGTGATAACCCAC 59.126 47.826 0.00 0.00 37.55 4.61
334 335 3.776969 AGCAAGAGAGATGTGATAACCCA 59.223 43.478 0.00 0.00 0.00 4.51
335 336 4.100808 AGAGCAAGAGAGATGTGATAACCC 59.899 45.833 0.00 0.00 0.00 4.11
336 337 5.049167 CAGAGCAAGAGAGATGTGATAACC 58.951 45.833 0.00 0.00 0.00 2.85
337 338 4.507388 GCAGAGCAAGAGAGATGTGATAAC 59.493 45.833 0.00 0.00 0.00 1.89
338 339 4.405036 AGCAGAGCAAGAGAGATGTGATAA 59.595 41.667 0.00 0.00 0.00 1.75
339 340 3.959449 AGCAGAGCAAGAGAGATGTGATA 59.041 43.478 0.00 0.00 0.00 2.15
340 341 2.767394 AGCAGAGCAAGAGAGATGTGAT 59.233 45.455 0.00 0.00 0.00 3.06
341 342 2.166050 GAGCAGAGCAAGAGAGATGTGA 59.834 50.000 0.00 0.00 0.00 3.58
342 343 2.542597 GAGCAGAGCAAGAGAGATGTG 58.457 52.381 0.00 0.00 0.00 3.21
343 344 1.481772 GGAGCAGAGCAAGAGAGATGT 59.518 52.381 0.00 0.00 0.00 3.06
344 345 1.202557 GGGAGCAGAGCAAGAGAGATG 60.203 57.143 0.00 0.00 0.00 2.90
345 346 1.122227 GGGAGCAGAGCAAGAGAGAT 58.878 55.000 0.00 0.00 0.00 2.75
346 347 0.975040 GGGGAGCAGAGCAAGAGAGA 60.975 60.000 0.00 0.00 0.00 3.10
347 348 0.977108 AGGGGAGCAGAGCAAGAGAG 60.977 60.000 0.00 0.00 0.00 3.20
348 349 0.546267 AAGGGGAGCAGAGCAAGAGA 60.546 55.000 0.00 0.00 0.00 3.10
349 350 0.107752 GAAGGGGAGCAGAGCAAGAG 60.108 60.000 0.00 0.00 0.00 2.85
350 351 1.557269 GGAAGGGGAGCAGAGCAAGA 61.557 60.000 0.00 0.00 0.00 3.02
351 352 1.077858 GGAAGGGGAGCAGAGCAAG 60.078 63.158 0.00 0.00 0.00 4.01
352 353 2.606587 GGGAAGGGGAGCAGAGCAA 61.607 63.158 0.00 0.00 0.00 3.91
353 354 2.181523 TAGGGAAGGGGAGCAGAGCA 62.182 60.000 0.00 0.00 0.00 4.26
354 355 1.383248 TAGGGAAGGGGAGCAGAGC 60.383 63.158 0.00 0.00 0.00 4.09
355 356 0.031616 AGTAGGGAAGGGGAGCAGAG 60.032 60.000 0.00 0.00 0.00 3.35
356 357 0.032017 GAGTAGGGAAGGGGAGCAGA 60.032 60.000 0.00 0.00 0.00 4.26
357 358 0.031616 AGAGTAGGGAAGGGGAGCAG 60.032 60.000 0.00 0.00 0.00 4.24
358 359 0.325671 CAGAGTAGGGAAGGGGAGCA 60.326 60.000 0.00 0.00 0.00 4.26
359 360 1.691195 GCAGAGTAGGGAAGGGGAGC 61.691 65.000 0.00 0.00 0.00 4.70
360 361 0.031616 AGCAGAGTAGGGAAGGGGAG 60.032 60.000 0.00 0.00 0.00 4.30
361 362 0.032017 GAGCAGAGTAGGGAAGGGGA 60.032 60.000 0.00 0.00 0.00 4.81
362 363 1.395826 CGAGCAGAGTAGGGAAGGGG 61.396 65.000 0.00 0.00 0.00 4.79
363 364 2.022240 GCGAGCAGAGTAGGGAAGGG 62.022 65.000 0.00 0.00 0.00 3.95
364 365 1.439644 GCGAGCAGAGTAGGGAAGG 59.560 63.158 0.00 0.00 0.00 3.46
365 366 1.439644 GGCGAGCAGAGTAGGGAAG 59.560 63.158 0.00 0.00 0.00 3.46
366 367 2.415608 CGGCGAGCAGAGTAGGGAA 61.416 63.158 0.00 0.00 0.00 3.97
367 368 2.829003 CGGCGAGCAGAGTAGGGA 60.829 66.667 0.00 0.00 0.00 4.20
368 369 3.127352 GACGGCGAGCAGAGTAGGG 62.127 68.421 16.62 0.00 0.00 3.53
369 370 2.409651 GACGGCGAGCAGAGTAGG 59.590 66.667 16.62 0.00 0.00 3.18
370 371 2.023461 CGACGGCGAGCAGAGTAG 59.977 66.667 16.62 0.00 40.82 2.57
371 372 2.745100 ACGACGGCGAGCAGAGTA 60.745 61.111 22.49 0.00 41.64 2.59
372 373 4.104417 GACGACGGCGAGCAGAGT 62.104 66.667 22.49 0.00 41.64 3.24
375 376 4.538283 ATCGACGACGGCGAGCAG 62.538 66.667 31.13 5.22 41.49 4.24
376 377 4.531912 GATCGACGACGGCGAGCA 62.532 66.667 34.02 11.31 43.01 4.26
378 379 4.609247 GGGATCGACGACGGCGAG 62.609 72.222 31.13 11.82 41.49 5.03
380 381 4.907034 CAGGGATCGACGACGGCG 62.907 72.222 19.07 19.07 44.79 6.46
381 382 3.352338 AACAGGGATCGACGACGGC 62.352 63.158 7.55 0.00 40.21 5.68
382 383 1.226603 GAACAGGGATCGACGACGG 60.227 63.158 7.55 0.00 40.21 4.79
383 384 1.582937 CGAACAGGGATCGACGACG 60.583 63.158 0.00 0.00 42.76 5.12
384 385 1.872679 GCGAACAGGGATCGACGAC 60.873 63.158 0.00 0.00 42.76 4.34
385 386 2.488355 GCGAACAGGGATCGACGA 59.512 61.111 0.00 0.00 42.76 4.20
386 387 2.582498 GGCGAACAGGGATCGACG 60.582 66.667 0.00 0.00 42.76 5.12
388 389 1.076559 TAGGGCGAACAGGGATCGA 60.077 57.895 0.00 0.00 42.76 3.59
389 390 1.364171 CTAGGGCGAACAGGGATCG 59.636 63.158 0.00 0.00 42.99 3.69
390 391 1.749033 CCTAGGGCGAACAGGGATC 59.251 63.158 0.00 0.00 0.00 3.36
391 392 3.971894 CCTAGGGCGAACAGGGAT 58.028 61.111 0.00 0.00 0.00 3.85
394 395 2.291043 ACACCCTAGGGCGAACAGG 61.291 63.158 28.88 10.81 39.32 4.00
395 396 1.079127 CACACCCTAGGGCGAACAG 60.079 63.158 28.88 12.89 39.32 3.16
396 397 1.534476 TCACACCCTAGGGCGAACA 60.534 57.895 28.88 5.29 39.32 3.18
397 398 1.079336 GTCACACCCTAGGGCGAAC 60.079 63.158 28.88 17.40 39.32 3.95
398 399 1.122632 TTGTCACACCCTAGGGCGAA 61.123 55.000 28.88 9.58 39.32 4.70
399 400 1.534476 TTGTCACACCCTAGGGCGA 60.534 57.895 28.88 18.70 39.32 5.54
400 401 1.375523 GTTGTCACACCCTAGGGCG 60.376 63.158 28.88 21.74 39.32 6.13
401 402 1.002502 GGTTGTCACACCCTAGGGC 60.003 63.158 28.88 11.67 39.32 5.19
402 403 1.189524 TCGGTTGTCACACCCTAGGG 61.190 60.000 27.36 27.36 42.03 3.53
403 404 0.037605 GTCGGTTGTCACACCCTAGG 60.038 60.000 0.06 0.06 32.48 3.02
404 405 0.677288 TGTCGGTTGTCACACCCTAG 59.323 55.000 0.00 0.00 32.48 3.02
405 406 1.121378 TTGTCGGTTGTCACACCCTA 58.879 50.000 0.00 0.00 32.48 3.53
406 407 0.463116 GTTGTCGGTTGTCACACCCT 60.463 55.000 0.00 0.00 32.48 4.34
407 408 1.441732 GGTTGTCGGTTGTCACACCC 61.442 60.000 0.00 0.00 32.48 4.61
408 409 0.463116 AGGTTGTCGGTTGTCACACC 60.463 55.000 0.00 0.00 0.00 4.16
409 410 0.655733 CAGGTTGTCGGTTGTCACAC 59.344 55.000 0.00 0.00 0.00 3.82
410 411 0.537653 TCAGGTTGTCGGTTGTCACA 59.462 50.000 0.00 0.00 0.00 3.58
411 412 1.878953 ATCAGGTTGTCGGTTGTCAC 58.121 50.000 0.00 0.00 0.00 3.67
412 413 3.973206 ATATCAGGTTGTCGGTTGTCA 57.027 42.857 0.00 0.00 0.00 3.58
413 414 4.751060 TGTATATCAGGTTGTCGGTTGTC 58.249 43.478 0.00 0.00 0.00 3.18
414 415 4.811969 TGTATATCAGGTTGTCGGTTGT 57.188 40.909 0.00 0.00 0.00 3.32
415 416 5.601662 AGATGTATATCAGGTTGTCGGTTG 58.398 41.667 2.04 0.00 35.70 3.77
420 421 8.839310 ATTGCTAAGATGTATATCAGGTTGTC 57.161 34.615 2.04 0.00 35.70 3.18
434 435 7.848051 GTGAAACTAATGACGATTGCTAAGATG 59.152 37.037 0.00 0.00 0.00 2.90
502 503 2.146342 ACCTCAGCGAATGAAAGTGTG 58.854 47.619 0.00 0.00 37.52 3.82
503 504 2.550830 ACCTCAGCGAATGAAAGTGT 57.449 45.000 0.00 0.00 37.52 3.55
512 514 1.681793 GTAGCTCCATACCTCAGCGAA 59.318 52.381 0.00 0.00 38.26 4.70
569 571 3.451556 CTCCCGGATCGCTGCACAT 62.452 63.158 0.73 0.00 0.00 3.21
583 585 1.562672 TTTAGCCTCAGTGCCCTCCC 61.563 60.000 0.00 0.00 0.00 4.30
593 595 3.770933 ACTATTACCCGTGTTTAGCCTCA 59.229 43.478 0.00 0.00 0.00 3.86
599 601 6.024552 ACGAAGAACTATTACCCGTGTTTA 57.975 37.500 0.00 0.00 0.00 2.01
653 662 2.936202 ACAAGAGCCTTCAAGCAGAAA 58.064 42.857 0.00 0.00 35.40 2.52
673 682 0.040514 CATCAAACGTCCAGCGCAAA 60.041 50.000 11.47 0.00 46.11 3.68
735 748 5.866159 AAACTAACCTACCGGAGATAAGG 57.134 43.478 9.46 9.21 35.14 2.69
745 758 5.251601 TGCACAACAAAAACTAACCTACC 57.748 39.130 0.00 0.00 0.00 3.18
746 759 6.975772 TGATTGCACAACAAAAACTAACCTAC 59.024 34.615 0.00 0.00 42.86 3.18
787 800 1.070821 CTCGCAATCGACACACACAT 58.929 50.000 0.00 0.00 40.21 3.21
842 855 3.545366 AAGCGAGAAAGGGGATAAGTC 57.455 47.619 0.00 0.00 0.00 3.01
843 856 3.679083 CGAAAGCGAGAAAGGGGATAAGT 60.679 47.826 0.00 0.00 40.82 2.24
908 921 1.612676 AACCCCTTTCCGTTACAAGC 58.387 50.000 0.00 0.00 0.00 4.01
965 978 2.223464 CTGGTATGGGTGGGTTGGGG 62.223 65.000 0.00 0.00 0.00 4.96
1061 1365 2.107204 CAATCGATTTGGAGGGAGGGAT 59.893 50.000 8.21 0.00 0.00 3.85
1110 1414 5.816449 TTCTTCGCAATTGCTATTCATCA 57.184 34.783 26.86 0.40 39.32 3.07
1113 1417 9.236691 GAAATATTTCTTCGCAATTGCTATTCA 57.763 29.630 26.86 8.04 35.11 2.57
1546 1868 0.179100 AGATCGGAATGCGTGTGGAG 60.179 55.000 0.00 0.00 0.00 3.86
1560 1883 0.251165 GAGGAGGGGAGAGGAGATCG 60.251 65.000 0.00 0.00 0.00 3.69
1773 2103 3.934962 GCCGCATCCTCCTCCTCC 61.935 72.222 0.00 0.00 0.00 4.30
2178 2539 2.439507 TCAACAGGAGAGACAAAAGCCT 59.560 45.455 0.00 0.00 0.00 4.58
2180 2541 3.206150 TGTCAACAGGAGAGACAAAAGC 58.794 45.455 0.00 0.00 39.15 3.51
2193 2554 0.172578 TATCGCGTCCCTGTCAACAG 59.827 55.000 5.77 3.08 43.40 3.16
2311 2672 5.741011 ACCTCGTAATTCTTGAATAAGCCA 58.259 37.500 0.00 0.00 33.82 4.75
2376 2737 7.168135 CACAAGTTTTTATCCAGAGAGCAAAAC 59.832 37.037 0.00 0.00 0.00 2.43
2401 2762 6.976636 TGAGCAAATGTATAACGTCATTCA 57.023 33.333 1.19 0.00 33.86 2.57
2468 2829 5.590259 CCTTCATAAATTCTTCATGGTCGGT 59.410 40.000 0.00 0.00 0.00 4.69
2472 2833 5.163478 GCTGCCTTCATAAATTCTTCATGGT 60.163 40.000 0.00 0.00 0.00 3.55
2476 2837 4.094887 GTCGCTGCCTTCATAAATTCTTCA 59.905 41.667 0.00 0.00 0.00 3.02
2515 2876 7.861629 TCCTATCATTGGTCTCTACAAATTGT 58.138 34.615 3.43 3.43 25.67 2.71
2527 2888 2.887152 GGCCACATTCCTATCATTGGTC 59.113 50.000 0.00 0.00 0.00 4.02
2861 3223 9.699410 TCTGGAAAATGGAATTACATGAGTTAT 57.301 29.630 3.26 0.00 33.67 1.89
2883 3245 5.395682 TTTTCTTCAAATGCTCCATCTGG 57.604 39.130 0.00 0.00 0.00 3.86
3040 3405 4.085357 TGTGATGTATATCCAAGGTGCC 57.915 45.455 0.00 0.00 32.09 5.01
3131 3498 9.975218 ATTAACCATGTAAAAGACCAAGAGTAT 57.025 29.630 0.00 0.00 0.00 2.12
3345 3712 1.805345 CTGCAGTGCCAGAGAGAAAAG 59.195 52.381 13.72 0.00 34.77 2.27
3504 3871 6.599244 CACCTGCATCTACTGGAAAAAGATAA 59.401 38.462 0.00 0.00 33.18 1.75
3568 3935 5.871531 GCAACAGGCAATATCATTAAACG 57.128 39.130 0.00 0.00 43.97 3.60
3581 3948 7.519032 AACTTTATAGTTTTAGCAACAGGCA 57.481 32.000 0.00 0.00 43.02 4.75
3639 4006 4.199310 TCTGCCTCCAACACATATTTAGC 58.801 43.478 0.00 0.00 0.00 3.09
3648 4015 3.002348 GCGTTAATATCTGCCTCCAACAC 59.998 47.826 0.00 0.00 0.00 3.32
3793 4160 0.249657 CTGAGCGGAAGTATGGAGGC 60.250 60.000 0.00 0.00 0.00 4.70
4044 4412 1.913419 TGGGGGTCAAAGGCTAAGTAG 59.087 52.381 0.00 0.00 0.00 2.57
4080 4450 3.699538 ACAACCTTTTCAACAAGTCCCTC 59.300 43.478 0.00 0.00 0.00 4.30
4146 4516 6.739331 AAGATCAAATACCTCGAGGAGAAT 57.261 37.500 37.69 22.80 38.94 2.40
4148 4518 6.366340 AGTAAGATCAAATACCTCGAGGAGA 58.634 40.000 37.69 24.05 38.94 3.71
4264 4634 8.087750 TGAGCCTATGGTTTTCAATGTAAAAAG 58.912 33.333 0.00 0.00 30.53 2.27
4384 4755 4.100529 GTTCATTCACCGAAGCATCAATG 58.899 43.478 0.00 0.00 0.00 2.82
4574 4945 9.482627 CCACCTCTGTATCAAAATATAAGACTC 57.517 37.037 0.00 0.00 0.00 3.36
4598 4969 6.214615 TCCCAATACTTCAATGAGAACTACCA 59.785 38.462 0.00 0.00 31.61 3.25
4599 4970 6.650120 TCCCAATACTTCAATGAGAACTACC 58.350 40.000 0.00 0.00 31.61 3.18
4606 4977 7.230108 AGCACATAATCCCAATACTTCAATGAG 59.770 37.037 0.00 0.00 0.00 2.90
4695 5171 4.154195 AGCAATCCAACAGATAACGTGAAC 59.846 41.667 0.00 0.00 33.66 3.18
4928 5405 3.426615 ACAACAAACAAACTCACCCTCA 58.573 40.909 0.00 0.00 0.00 3.86
5010 5488 2.917701 TGCAGTGAACAACAACTGTG 57.082 45.000 0.00 0.00 38.67 3.66
5012 5490 4.175516 ACATTTGCAGTGAACAACAACTG 58.824 39.130 8.02 0.00 33.82 3.16
5013 5491 4.454728 ACATTTGCAGTGAACAACAACT 57.545 36.364 8.02 0.00 0.00 3.16
5014 5492 4.884707 CAACATTTGCAGTGAACAACAAC 58.115 39.130 8.02 0.00 0.00 3.32
5061 5539 8.862325 TTTCTGCTTATTCTTTATCCACAGAA 57.138 30.769 0.00 0.00 39.21 3.02
5105 5583 5.500234 CAATTCCACCAGAACCTCATCTTA 58.500 41.667 0.00 0.00 37.29 2.10
5145 5623 8.499967 GCTTTTCTTCCTTATATAGCTGTTAGC 58.500 37.037 0.00 0.00 42.84 3.09
5146 5624 9.771534 AGCTTTTCTTCCTTATATAGCTGTTAG 57.228 33.333 0.00 0.00 36.46 2.34
5158 5636 7.668052 TGCCACTTATTAAGCTTTTCTTCCTTA 59.332 33.333 3.20 0.00 36.25 2.69
5159 5637 6.493458 TGCCACTTATTAAGCTTTTCTTCCTT 59.507 34.615 3.20 0.00 36.25 3.36
5160 5638 6.010219 TGCCACTTATTAAGCTTTTCTTCCT 58.990 36.000 3.20 0.00 36.25 3.36
5162 5640 9.855021 TTTATGCCACTTATTAAGCTTTTCTTC 57.145 29.630 3.20 0.00 36.25 2.87
5165 5643 9.801873 TCATTTATGCCACTTATTAAGCTTTTC 57.198 29.630 3.20 0.00 0.00 2.29
5179 5663 4.942761 ATCACCCATTCATTTATGCCAC 57.057 40.909 0.00 0.00 0.00 5.01
5231 5717 6.212388 AGCTAGAAACCTTCAGATCTCTTTCA 59.788 38.462 0.00 0.00 0.00 2.69
5232 5718 6.639563 AGCTAGAAACCTTCAGATCTCTTTC 58.360 40.000 0.00 0.00 0.00 2.62
5292 5778 3.604875 ATTCAGCAGAATGGCAAAAGG 57.395 42.857 3.20 0.00 42.72 3.11
5318 5804 6.503560 TGGGTCATAACGGGTTATTAGATT 57.496 37.500 1.41 0.00 33.79 2.40
5328 5814 2.297701 CCTTTGATGGGTCATAACGGG 58.702 52.381 0.00 0.00 33.56 5.28
5331 5817 8.747538 AAGTTATACCTTTGATGGGTCATAAC 57.252 34.615 0.00 0.00 38.19 1.89
5462 5950 3.129109 GGGTAACTTATGGCGTCTTAGC 58.871 50.000 0.00 0.00 0.00 3.09
5464 5952 4.440525 CGAAGGGTAACTTATGGCGTCTTA 60.441 45.833 0.00 0.00 40.21 2.10
5467 5955 2.199236 CGAAGGGTAACTTATGGCGTC 58.801 52.381 0.00 0.00 40.21 5.19
5508 5996 3.579586 TGCATTTCCAAAAGGAGAGCAAT 59.420 39.130 0.00 0.00 0.00 3.56
5577 6065 2.695127 ATCTGCAGCTTCTCCTTGAG 57.305 50.000 9.47 0.00 0.00 3.02
5634 6155 2.226437 CGGCAGCTACTGTTTCAATGTT 59.774 45.455 0.00 0.00 33.43 2.71
5637 6158 0.804989 GCGGCAGCTACTGTTTCAAT 59.195 50.000 0.00 0.00 41.01 2.57
5639 6160 3.966215 GCGGCAGCTACTGTTTCA 58.034 55.556 0.00 0.00 41.01 2.69
5707 6229 1.401018 GGTCATTTTCCTTCAACGCGG 60.401 52.381 12.47 0.00 0.00 6.46
5781 6330 6.194796 TGTTTGATTTTAGATGGCTACTGC 57.805 37.500 0.00 0.00 38.76 4.40
5865 6467 7.666623 TCATGCAACATCCGATATTAGAGTTA 58.333 34.615 0.00 0.00 0.00 2.24
5878 6480 4.337555 AGCTTTGATACTCATGCAACATCC 59.662 41.667 0.00 0.00 31.65 3.51
5891 6493 3.119708 CCAACCTGCTTGAGCTTTGATAC 60.120 47.826 4.44 0.00 42.66 2.24
5896 6498 0.106015 ACCCAACCTGCTTGAGCTTT 60.106 50.000 4.44 0.00 42.66 3.51
5914 6564 8.627208 ATTGGGATCATTCTCATGTAACATAC 57.373 34.615 0.00 0.00 30.68 2.39
5922 6572 8.770828 GCAAAATAAATTGGGATCATTCTCATG 58.229 33.333 0.00 0.00 30.68 3.07
5957 6608 8.567948 ACTCAACACACATTTTCTAACCAATAG 58.432 33.333 0.00 0.00 0.00 1.73
5966 6617 4.160252 AGCCAAACTCAACACACATTTTCT 59.840 37.500 0.00 0.00 0.00 2.52
5973 6624 3.502191 TTGAAGCCAAACTCAACACAC 57.498 42.857 0.00 0.00 0.00 3.82
5978 6629 3.766591 TGGAACTTTGAAGCCAAACTCAA 59.233 39.130 0.00 0.00 37.36 3.02
6008 6689 6.347696 TCAACATTTTGCATCCAAAGAAACT 58.652 32.000 0.00 0.00 41.58 2.66
6077 6799 1.087501 GCCTTCATTTCGTCCTGGTC 58.912 55.000 0.00 0.00 0.00 4.02
6078 6800 0.400213 TGCCTTCATTTCGTCCTGGT 59.600 50.000 0.00 0.00 0.00 4.00
6082 6804 5.106317 TGTTCTATTTGCCTTCATTTCGTCC 60.106 40.000 0.00 0.00 0.00 4.79
6096 6818 6.090358 CCTGCATTTGAGCTTTGTTCTATTTG 59.910 38.462 0.00 0.00 34.99 2.32
6132 6858 5.989777 TGTTCTTGAGCCTGTAGAACTAAAC 59.010 40.000 13.60 0.00 44.98 2.01
6133 6859 6.169557 TGTTCTTGAGCCTGTAGAACTAAA 57.830 37.500 13.60 0.00 44.98 1.85
6140 6866 5.106396 CCTGATTTTGTTCTTGAGCCTGTAG 60.106 44.000 0.00 0.00 0.00 2.74
6143 6869 3.613432 GCCTGATTTTGTTCTTGAGCCTG 60.613 47.826 0.00 0.00 0.00 4.85
6151 6877 8.744568 TTTAAAATTTGGCCTGATTTTGTTCT 57.255 26.923 26.31 12.17 36.46 3.01
6152 6878 9.964303 AATTTAAAATTTGGCCTGATTTTGTTC 57.036 25.926 26.31 0.00 36.46 3.18
6361 7087 1.909986 GAGATGGGTATAAGAGGGGGC 59.090 57.143 0.00 0.00 0.00 5.80
6423 7149 2.795110 TTGGCTTTGCTGGTGGTGC 61.795 57.895 0.00 0.00 0.00 5.01
6430 7156 2.252260 CGTCGGTTGGCTTTGCTG 59.748 61.111 0.00 0.00 0.00 4.41
6432 7158 3.959975 TGCGTCGGTTGGCTTTGC 61.960 61.111 0.00 0.00 0.00 3.68
6503 7234 3.636231 CCCAAGGCCACGAGACCA 61.636 66.667 5.01 0.00 0.00 4.02
6547 7278 1.890979 GCTGCCTGATCCGGTGATG 60.891 63.158 0.00 0.00 0.00 3.07
6553 7284 2.109799 ATTCGGCTGCCTGATCCG 59.890 61.111 17.92 1.99 44.16 4.18
6630 7361 3.005684 TGGGAGCACAAGTAGCATTTTTG 59.994 43.478 0.00 0.00 0.00 2.44
6633 7364 2.162681 GTGGGAGCACAAGTAGCATTT 58.837 47.619 0.00 0.00 0.00 2.32
6634 7365 1.614317 GGTGGGAGCACAAGTAGCATT 60.614 52.381 0.00 0.00 0.00 3.56
6635 7366 0.035056 GGTGGGAGCACAAGTAGCAT 60.035 55.000 0.00 0.00 0.00 3.79
6640 7371 3.168528 ACCGGTGGGAGCACAAGT 61.169 61.111 6.12 0.00 36.97 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.