Multiple sequence alignment - TraesCS7A01G123800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G123800 chr7A 100.000 2451 0 0 1 2451 80015480 80013030 0.000000e+00 4527
1 TraesCS7A01G123800 chr5D 96.954 2101 59 3 160 2256 549447505 549449604 0.000000e+00 3520
2 TraesCS7A01G123800 chr5D 96.480 2102 66 4 160 2257 486327537 486329634 0.000000e+00 3465
3 TraesCS7A01G123800 chr5D 94.924 197 10 0 2255 2451 25080656 25080460 2.370000e-80 309
4 TraesCS7A01G123800 chr5D 94.924 197 8 1 2255 2451 128599374 128599568 8.510000e-80 307
5 TraesCS7A01G123800 chr5D 94.924 197 8 1 2255 2451 302760660 302760854 8.510000e-80 307
6 TraesCS7A01G123800 chr5D 97.059 170 3 2 1 168 412033231 412033062 3.990000e-73 285
7 TraesCS7A01G123800 chr5D 95.480 177 4 3 1 173 263334248 263334072 1.860000e-71 279
8 TraesCS7A01G123800 chr5D 95.930 172 6 1 1 172 293183795 293183625 6.680000e-71 278
9 TraesCS7A01G123800 chr5D 94.886 176 9 0 1 176 187496922 187497097 2.400000e-70 276
10 TraesCS7A01G123800 chr1D 96.811 2101 63 1 160 2256 8787589 8789689 0.000000e+00 3506
11 TraesCS7A01G123800 chr1D 95.431 197 7 1 2255 2451 455889710 455889904 1.830000e-81 313
12 TraesCS7A01G123800 chr1D 94.924 197 9 1 2255 2451 269254704 269254509 8.510000e-80 307
13 TraesCS7A01G123800 chr1D 96.471 170 4 2 1 168 20504977 20504808 1.860000e-71 279
14 TraesCS7A01G123800 chr1D 96.471 170 4 2 1 168 118043920 118044089 1.860000e-71 279
15 TraesCS7A01G123800 chr1D 96.471 170 4 2 1 168 133803086 133803255 1.860000e-71 279
16 TraesCS7A01G123800 chr1D 95.954 173 5 1 1 171 139106996 139107168 1.860000e-71 279
17 TraesCS7A01G123800 chr1D 96.471 170 4 2 1 168 153822081 153822250 1.860000e-71 279
18 TraesCS7A01G123800 chr1D 96.471 170 4 2 1 168 188012127 188011958 1.860000e-71 279
19 TraesCS7A01G123800 chr1D 96.471 170 4 2 1 168 209643158 209642989 1.860000e-71 279
20 TraesCS7A01G123800 chr7D 96.717 2102 57 4 160 2256 614209005 614211099 0.000000e+00 3489
21 TraesCS7A01G123800 chr7D 96.665 2099 67 3 160 2256 611448301 611446204 0.000000e+00 3485
22 TraesCS7A01G123800 chr7D 94.924 197 8 1 2255 2451 159753834 159753640 8.510000e-80 307
23 TraesCS7A01G123800 chr7D 94.898 196 8 1 2255 2450 146615834 146616027 3.060000e-79 305
24 TraesCS7A01G123800 chr6D 96.625 2104 66 2 160 2258 437743557 437741454 0.000000e+00 3487
25 TraesCS7A01G123800 chr6D 96.476 2100 68 6 160 2256 54027649 54029745 0.000000e+00 3463
26 TraesCS7A01G123800 chr6D 97.059 170 3 2 1 168 130293067 130293236 3.990000e-73 285
27 TraesCS7A01G123800 chr2D 96.663 2098 67 3 160 2256 562183453 562181358 0.000000e+00 3483
28 TraesCS7A01G123800 chr2D 95.431 197 7 1 2255 2451 619112785 619112979 1.830000e-81 313
29 TraesCS7A01G123800 chr2D 97.059 170 3 2 1 168 304762883 304762714 3.990000e-73 285
30 TraesCS7A01G123800 chr3D 96.520 2098 71 2 160 2256 550751020 550753116 0.000000e+00 3469
31 TraesCS7A01G123800 chr3D 97.059 170 3 2 1 168 358851586 358851755 3.990000e-73 285
32 TraesCS7A01G123800 chr3D 97.059 170 3 2 1 168 502587426 502587257 3.990000e-73 285
33 TraesCS7A01G123800 chr4D 94.924 197 8 1 2255 2451 340527707 340527901 8.510000e-80 307
34 TraesCS7A01G123800 chr4D 97.059 170 3 2 1 168 487686625 487686456 3.990000e-73 285
35 TraesCS7A01G123800 chr6A 97.041 169 4 1 1 168 456136075 456136243 1.430000e-72 283
36 TraesCS7A01G123800 chrUn 98.125 160 3 0 1 160 79051842 79052001 1.860000e-71 279
37 TraesCS7A01G123800 chrUn 97.516 161 4 0 1 161 92153733 92153573 2.400000e-70 276
38 TraesCS7A01G123800 chrUn 97.516 161 4 0 1 161 96386359 96386199 2.400000e-70 276
39 TraesCS7A01G123800 chrUn 94.886 176 9 0 1 176 105800210 105800385 2.400000e-70 276
40 TraesCS7A01G123800 chrUn 96.951 164 5 0 1 164 126780254 126780417 2.400000e-70 276
41 TraesCS7A01G123800 chrUn 95.882 170 5 2 1 168 24183701 24183870 8.630000e-70 274
42 TraesCS7A01G123800 chrUn 96.951 164 4 1 1 164 28665232 28665394 8.630000e-70 274
43 TraesCS7A01G123800 chrUn 95.882 170 5 2 1 168 89018469 89018300 8.630000e-70 274
44 TraesCS7A01G123800 chrUn 95.882 170 5 2 1 168 93667646 93667815 8.630000e-70 274
45 TraesCS7A01G123800 chrUn 95.882 170 5 2 1 168 97485843 97486012 8.630000e-70 274
46 TraesCS7A01G123800 chrUn 95.882 170 5 2 1 168 99890278 99890447 8.630000e-70 274
47 TraesCS7A01G123800 chrUn 95.882 170 5 2 1 168 103635206 103635037 8.630000e-70 274
48 TraesCS7A01G123800 chrUn 95.882 170 5 2 1 168 127161667 127161836 8.630000e-70 274
49 TraesCS7A01G123800 chrUn 95.882 170 5 2 1 168 154354995 154355164 8.630000e-70 274
50 TraesCS7A01G123800 chrUn 94.886 176 5 4 1 172 23333556 23333381 3.110000e-69 272
51 TraesCS7A01G123800 chrUn 91.710 193 12 3 1 191 56850990 56851180 5.200000e-67 265


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G123800 chr7A 80013030 80015480 2450 True 4527 4527 100.000 1 2451 1 chr7A.!!$R1 2450
1 TraesCS7A01G123800 chr5D 549447505 549449604 2099 False 3520 3520 96.954 160 2256 1 chr5D.!!$F5 2096
2 TraesCS7A01G123800 chr5D 486327537 486329634 2097 False 3465 3465 96.480 160 2257 1 chr5D.!!$F4 2097
3 TraesCS7A01G123800 chr1D 8787589 8789689 2100 False 3506 3506 96.811 160 2256 1 chr1D.!!$F1 2096
4 TraesCS7A01G123800 chr7D 614209005 614211099 2094 False 3489 3489 96.717 160 2256 1 chr7D.!!$F2 2096
5 TraesCS7A01G123800 chr7D 611446204 611448301 2097 True 3485 3485 96.665 160 2256 1 chr7D.!!$R2 2096
6 TraesCS7A01G123800 chr6D 437741454 437743557 2103 True 3487 3487 96.625 160 2258 1 chr6D.!!$R1 2098
7 TraesCS7A01G123800 chr6D 54027649 54029745 2096 False 3463 3463 96.476 160 2256 1 chr6D.!!$F1 2096
8 TraesCS7A01G123800 chr2D 562181358 562183453 2095 True 3483 3483 96.663 160 2256 1 chr2D.!!$R2 2096
9 TraesCS7A01G123800 chr3D 550751020 550753116 2096 False 3469 3469 96.520 160 2256 1 chr3D.!!$F2 2096

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
94 95 0.036388 GCTCCCCTTGTGTCGAATCA 60.036 55.0 0.0 0.0 0.00 2.57 F
144 145 0.107654 AAGCTGTTGCGATCCCCTAC 60.108 55.0 0.0 0.0 45.42 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1316 1319 0.661552 CGAAGGCTGCCATTCTGATG 59.338 55.000 22.65 5.5 0.0 3.07 R
1985 1991 1.146359 GGAGGTGGTTTAGGGGTTTGT 59.854 52.381 0.00 0.0 0.0 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.734924 TTGCTGCAGATATTAAGTTATCCAG 57.265 36.000 20.43 0.00 30.29 3.86
26 27 6.233434 TGCTGCAGATATTAAGTTATCCAGG 58.767 40.000 20.43 0.00 30.29 4.45
27 28 6.183361 TGCTGCAGATATTAAGTTATCCAGGT 60.183 38.462 20.43 0.00 30.29 4.00
28 29 6.148480 GCTGCAGATATTAAGTTATCCAGGTG 59.852 42.308 20.43 0.00 30.29 4.00
29 30 7.136822 TGCAGATATTAAGTTATCCAGGTGT 57.863 36.000 0.00 0.00 30.29 4.16
30 31 6.992123 TGCAGATATTAAGTTATCCAGGTGTG 59.008 38.462 0.00 0.00 30.29 3.82
31 32 6.428159 GCAGATATTAAGTTATCCAGGTGTGG 59.572 42.308 0.00 0.00 46.63 4.17
32 33 7.509546 CAGATATTAAGTTATCCAGGTGTGGT 58.490 38.462 0.00 0.00 45.28 4.16
33 34 7.993183 CAGATATTAAGTTATCCAGGTGTGGTT 59.007 37.037 0.00 0.00 45.28 3.67
34 35 7.993183 AGATATTAAGTTATCCAGGTGTGGTTG 59.007 37.037 0.00 0.00 45.28 3.77
35 36 5.570205 TTAAGTTATCCAGGTGTGGTTGA 57.430 39.130 0.00 0.00 45.28 3.18
36 37 4.447138 AAGTTATCCAGGTGTGGTTGAA 57.553 40.909 0.00 0.00 45.28 2.69
37 38 4.657814 AGTTATCCAGGTGTGGTTGAAT 57.342 40.909 0.00 0.00 45.28 2.57
38 39 4.998051 AGTTATCCAGGTGTGGTTGAATT 58.002 39.130 0.00 0.00 45.28 2.17
39 40 4.766891 AGTTATCCAGGTGTGGTTGAATTG 59.233 41.667 0.00 0.00 45.28 2.32
40 41 3.524095 ATCCAGGTGTGGTTGAATTGA 57.476 42.857 0.00 0.00 45.28 2.57
41 42 2.582052 TCCAGGTGTGGTTGAATTGAC 58.418 47.619 0.00 0.00 45.28 3.18
42 43 2.092158 TCCAGGTGTGGTTGAATTGACA 60.092 45.455 0.00 0.00 45.28 3.58
43 44 2.692557 CCAGGTGTGGTTGAATTGACAA 59.307 45.455 0.00 0.00 39.30 3.18
44 45 3.490761 CCAGGTGTGGTTGAATTGACAAC 60.491 47.826 0.00 0.00 46.20 3.32
45 46 3.381272 CAGGTGTGGTTGAATTGACAACT 59.619 43.478 9.21 0.00 46.17 3.16
46 47 3.632145 AGGTGTGGTTGAATTGACAACTC 59.368 43.478 9.21 0.00 46.17 3.01
47 48 3.380004 GGTGTGGTTGAATTGACAACTCA 59.620 43.478 9.21 0.00 46.17 3.41
48 49 4.142271 GGTGTGGTTGAATTGACAACTCAA 60.142 41.667 7.94 7.94 46.17 3.02
49 50 4.798387 GTGTGGTTGAATTGACAACTCAAC 59.202 41.667 26.56 26.56 46.17 3.18
50 51 4.704540 TGTGGTTGAATTGACAACTCAACT 59.295 37.500 30.54 0.00 45.33 3.16
51 52 5.036737 GTGGTTGAATTGACAACTCAACTG 58.963 41.667 30.54 0.00 45.33 3.16
52 53 4.044426 GGTTGAATTGACAACTCAACTGC 58.956 43.478 30.54 17.88 45.33 4.40
53 54 4.202050 GGTTGAATTGACAACTCAACTGCT 60.202 41.667 30.54 0.00 45.33 4.24
54 55 5.008613 GGTTGAATTGACAACTCAACTGCTA 59.991 40.000 30.54 2.98 45.33 3.49
55 56 6.459573 GGTTGAATTGACAACTCAACTGCTAA 60.460 38.462 30.54 2.33 45.33 3.09
56 57 6.882610 TGAATTGACAACTCAACTGCTAAT 57.117 33.333 0.00 0.00 39.28 1.73
57 58 7.977789 TGAATTGACAACTCAACTGCTAATA 57.022 32.000 0.00 0.00 39.28 0.98
58 59 7.806690 TGAATTGACAACTCAACTGCTAATAC 58.193 34.615 0.00 0.00 39.28 1.89
59 60 7.661437 TGAATTGACAACTCAACTGCTAATACT 59.339 33.333 0.00 0.00 39.28 2.12
60 61 7.986085 ATTGACAACTCAACTGCTAATACTT 57.014 32.000 0.00 0.00 39.28 2.24
61 62 6.785488 TGACAACTCAACTGCTAATACTTG 57.215 37.500 0.00 0.00 0.00 3.16
62 63 6.521162 TGACAACTCAACTGCTAATACTTGA 58.479 36.000 0.00 0.00 0.00 3.02
63 64 6.646653 TGACAACTCAACTGCTAATACTTGAG 59.353 38.462 4.99 4.99 43.51 3.02
64 65 6.759272 ACAACTCAACTGCTAATACTTGAGA 58.241 36.000 12.09 0.00 41.42 3.27
65 66 7.217200 ACAACTCAACTGCTAATACTTGAGAA 58.783 34.615 12.09 0.00 41.42 2.87
66 67 7.880195 ACAACTCAACTGCTAATACTTGAGAAT 59.120 33.333 12.09 0.14 41.42 2.40
67 68 9.371136 CAACTCAACTGCTAATACTTGAGAATA 57.629 33.333 12.09 0.00 41.42 1.75
87 88 3.625314 TTTTTGGCTCCCCTTGTGT 57.375 47.368 0.00 0.00 0.00 3.72
88 89 1.408969 TTTTTGGCTCCCCTTGTGTC 58.591 50.000 0.00 0.00 0.00 3.67
89 90 0.821711 TTTTGGCTCCCCTTGTGTCG 60.822 55.000 0.00 0.00 0.00 4.35
90 91 1.701031 TTTGGCTCCCCTTGTGTCGA 61.701 55.000 0.00 0.00 0.00 4.20
91 92 1.701031 TTGGCTCCCCTTGTGTCGAA 61.701 55.000 0.00 0.00 0.00 3.71
92 93 1.299976 GGCTCCCCTTGTGTCGAAT 59.700 57.895 0.00 0.00 0.00 3.34
93 94 0.744771 GGCTCCCCTTGTGTCGAATC 60.745 60.000 0.00 0.00 0.00 2.52
94 95 0.036388 GCTCCCCTTGTGTCGAATCA 60.036 55.000 0.00 0.00 0.00 2.57
95 96 1.610624 GCTCCCCTTGTGTCGAATCAA 60.611 52.381 0.00 0.00 0.00 2.57
96 97 2.941415 GCTCCCCTTGTGTCGAATCAAT 60.941 50.000 4.42 0.00 0.00 2.57
97 98 3.681594 GCTCCCCTTGTGTCGAATCAATA 60.682 47.826 4.42 0.00 0.00 1.90
98 99 4.513442 CTCCCCTTGTGTCGAATCAATAA 58.487 43.478 4.42 0.00 0.00 1.40
99 100 4.912586 TCCCCTTGTGTCGAATCAATAAA 58.087 39.130 4.42 0.00 0.00 1.40
100 101 5.505780 TCCCCTTGTGTCGAATCAATAAAT 58.494 37.500 4.42 0.00 0.00 1.40
101 102 5.949354 TCCCCTTGTGTCGAATCAATAAATT 59.051 36.000 4.42 0.00 0.00 1.82
102 103 6.435904 TCCCCTTGTGTCGAATCAATAAATTT 59.564 34.615 0.00 0.00 0.00 1.82
103 104 6.531240 CCCCTTGTGTCGAATCAATAAATTTG 59.469 38.462 0.00 0.00 0.00 2.32
104 105 6.531240 CCCTTGTGTCGAATCAATAAATTTGG 59.469 38.462 0.00 1.78 0.00 3.28
105 106 6.531240 CCTTGTGTCGAATCAATAAATTTGGG 59.469 38.462 0.00 0.00 0.00 4.12
106 107 6.582677 TGTGTCGAATCAATAAATTTGGGT 57.417 33.333 0.00 0.00 0.00 4.51
107 108 6.987386 TGTGTCGAATCAATAAATTTGGGTT 58.013 32.000 0.00 0.00 0.00 4.11
108 109 6.865726 TGTGTCGAATCAATAAATTTGGGTTG 59.134 34.615 0.00 3.99 0.00 3.77
109 110 7.087639 GTGTCGAATCAATAAATTTGGGTTGA 58.912 34.615 14.00 14.00 35.33 3.18
110 111 7.596995 GTGTCGAATCAATAAATTTGGGTTGAA 59.403 33.333 15.01 2.31 34.62 2.69
111 112 8.310382 TGTCGAATCAATAAATTTGGGTTGAAT 58.690 29.630 15.01 9.74 34.62 2.57
112 113 9.796120 GTCGAATCAATAAATTTGGGTTGAATA 57.204 29.630 15.01 4.16 34.62 1.75
113 114 9.796120 TCGAATCAATAAATTTGGGTTGAATAC 57.204 29.630 15.01 10.41 34.62 1.89
114 115 9.801873 CGAATCAATAAATTTGGGTTGAATACT 57.198 29.630 15.01 5.42 34.62 2.12
127 128 6.986904 GGTTGAATACTCTACCCTTGAAAG 57.013 41.667 0.00 0.00 40.45 2.62
128 129 5.354513 GGTTGAATACTCTACCCTTGAAAGC 59.645 44.000 0.00 0.00 40.45 3.51
129 130 6.174049 GTTGAATACTCTACCCTTGAAAGCT 58.826 40.000 0.00 0.00 0.00 3.74
130 131 5.734720 TGAATACTCTACCCTTGAAAGCTG 58.265 41.667 0.00 0.00 0.00 4.24
131 132 5.248477 TGAATACTCTACCCTTGAAAGCTGT 59.752 40.000 0.00 0.00 0.00 4.40
132 133 5.763876 ATACTCTACCCTTGAAAGCTGTT 57.236 39.130 0.00 0.00 0.00 3.16
133 134 3.744660 ACTCTACCCTTGAAAGCTGTTG 58.255 45.455 0.00 0.00 0.00 3.33
134 135 2.485814 CTCTACCCTTGAAAGCTGTTGC 59.514 50.000 0.00 0.00 40.05 4.17
135 136 1.197721 CTACCCTTGAAAGCTGTTGCG 59.802 52.381 0.00 0.00 45.42 4.85
136 137 0.465460 ACCCTTGAAAGCTGTTGCGA 60.465 50.000 0.00 0.00 45.42 5.10
137 138 0.883833 CCCTTGAAAGCTGTTGCGAT 59.116 50.000 0.00 0.00 45.42 4.58
138 139 1.135575 CCCTTGAAAGCTGTTGCGATC 60.136 52.381 0.00 0.00 45.42 3.69
139 140 1.135575 CCTTGAAAGCTGTTGCGATCC 60.136 52.381 0.00 0.00 45.42 3.36
140 141 0.881118 TTGAAAGCTGTTGCGATCCC 59.119 50.000 0.00 0.00 45.42 3.85
141 142 0.960364 TGAAAGCTGTTGCGATCCCC 60.960 55.000 0.00 0.00 45.42 4.81
142 143 0.678048 GAAAGCTGTTGCGATCCCCT 60.678 55.000 0.00 0.00 45.42 4.79
143 144 0.618458 AAAGCTGTTGCGATCCCCTA 59.382 50.000 0.00 0.00 45.42 3.53
144 145 0.107654 AAGCTGTTGCGATCCCCTAC 60.108 55.000 0.00 0.00 45.42 3.18
145 146 1.220749 GCTGTTGCGATCCCCTACA 59.779 57.895 0.00 0.00 0.00 2.74
146 147 1.090052 GCTGTTGCGATCCCCTACAC 61.090 60.000 0.00 0.00 0.00 2.90
147 148 0.537188 CTGTTGCGATCCCCTACACT 59.463 55.000 0.00 0.00 0.00 3.55
148 149 0.981183 TGTTGCGATCCCCTACACTT 59.019 50.000 0.00 0.00 0.00 3.16
149 150 1.338674 TGTTGCGATCCCCTACACTTG 60.339 52.381 0.00 0.00 0.00 3.16
150 151 0.981183 TTGCGATCCCCTACACTTGT 59.019 50.000 0.00 0.00 0.00 3.16
151 152 0.249120 TGCGATCCCCTACACTTGTG 59.751 55.000 0.00 0.00 0.00 3.33
152 153 0.462047 GCGATCCCCTACACTTGTGG 60.462 60.000 5.72 0.00 0.00 4.17
153 154 0.178068 CGATCCCCTACACTTGTGGG 59.822 60.000 4.80 4.80 45.14 4.61
154 155 1.286248 GATCCCCTACACTTGTGGGT 58.714 55.000 10.56 0.00 44.20 4.51
155 156 1.633945 GATCCCCTACACTTGTGGGTT 59.366 52.381 10.56 0.33 44.20 4.11
156 157 2.419457 TCCCCTACACTTGTGGGTTA 57.581 50.000 10.56 0.00 44.20 2.85
157 158 2.923908 TCCCCTACACTTGTGGGTTAT 58.076 47.619 10.56 0.00 44.20 1.89
158 159 2.841881 TCCCCTACACTTGTGGGTTATC 59.158 50.000 10.56 0.00 44.20 1.75
199 200 0.546747 TCGGGGACAAATGGAGGAGT 60.547 55.000 0.00 0.00 0.00 3.85
242 243 1.257743 ATACACCACGTGAGCTGAGT 58.742 50.000 19.30 7.47 36.96 3.41
280 281 4.062293 CTCAACAAACCGATAGTCAACCA 58.938 43.478 0.00 0.00 0.00 3.67
377 378 8.731275 TTATGAACGTAGGAAATGTCATCATT 57.269 30.769 0.00 0.00 44.94 2.57
468 469 3.706140 GACGATGATCGGCGCTTT 58.294 55.556 19.82 0.00 45.59 3.51
562 565 6.882610 AGCATGACTTCAACTATTTCAACA 57.117 33.333 0.00 0.00 0.00 3.33
977 980 6.973229 ATTTCCATTGACAGCTTATTTTGC 57.027 33.333 0.00 0.00 0.00 3.68
1054 1057 7.254488 GCTCCGAATTAACTTATCAGGAGAAAC 60.254 40.741 11.82 0.00 44.87 2.78
1067 1070 3.099905 AGGAGAAACATCATCTGGTCGA 58.900 45.455 0.00 0.00 0.00 4.20
1117 1120 9.388506 ACAATATCTACAATCAAACTCCTCAAG 57.611 33.333 0.00 0.00 0.00 3.02
1131 1134 9.347240 CAAACTCCTCAAGATTATGGTCAATAT 57.653 33.333 0.00 0.00 0.00 1.28
1152 1155 0.389757 TGCCACTAGTGCACGTGTTA 59.610 50.000 17.86 3.81 32.85 2.41
1158 1161 4.927425 CCACTAGTGCACGTGTTAAACTAT 59.073 41.667 17.86 7.77 0.00 2.12
1159 1162 5.407387 CCACTAGTGCACGTGTTAAACTATT 59.593 40.000 17.86 11.05 0.00 1.73
1316 1319 2.728690 TTGTGTGCCTCATTTGATGC 57.271 45.000 1.41 1.41 36.43 3.91
1365 1368 8.685257 TTGAACATATATCCAGGTCATCCTAT 57.315 34.615 0.00 0.00 43.07 2.57
1385 1388 6.841229 TCCTATGAATCTCAACTGTCCATACT 59.159 38.462 0.00 0.00 0.00 2.12
1920 1926 4.214986 TGTTTAGGCATAGCAGTAGCAA 57.785 40.909 0.00 0.00 45.49 3.91
1946 1952 3.018149 ACGGAGATAAGAGAGGACACAC 58.982 50.000 0.00 0.00 0.00 3.82
1985 1991 6.451010 ACCTATACCAACCTAAATTAACCCCA 59.549 38.462 0.00 0.00 0.00 4.96
1986 1992 6.774170 CCTATACCAACCTAAATTAACCCCAC 59.226 42.308 0.00 0.00 0.00 4.61
2150 2160 4.529377 TCTGTCCCGGTTTGTATAAGAACT 59.471 41.667 0.00 0.00 0.00 3.01
2163 2173 5.486063 TGTATAAGAACTGGGACTAAAGGCA 59.514 40.000 0.00 0.00 0.00 4.75
2193 2203 3.181393 AGTAACGACCCTTTAGTCCCT 57.819 47.619 0.00 0.00 32.91 4.20
2203 2213 2.311841 CCTTTAGTCCCTGTTCCCCAAT 59.688 50.000 0.00 0.00 0.00 3.16
2238 2248 3.616219 CCTTATGAACCGGGACAAATGA 58.384 45.455 6.32 0.00 0.00 2.57
2258 2268 5.562298 TGAGCCTTTTTCTACTAGTGGTT 57.438 39.130 5.39 0.00 0.00 3.67
2259 2269 5.305585 TGAGCCTTTTTCTACTAGTGGTTG 58.694 41.667 5.39 0.00 0.00 3.77
2260 2270 5.163237 TGAGCCTTTTTCTACTAGTGGTTGT 60.163 40.000 5.39 0.00 0.00 3.32
2261 2271 5.691896 AGCCTTTTTCTACTAGTGGTTGTT 58.308 37.500 5.39 0.00 0.00 2.83
2262 2272 5.531287 AGCCTTTTTCTACTAGTGGTTGTTG 59.469 40.000 5.39 0.00 0.00 3.33
2263 2273 5.529800 GCCTTTTTCTACTAGTGGTTGTTGA 59.470 40.000 5.39 0.00 0.00 3.18
2264 2274 6.206829 GCCTTTTTCTACTAGTGGTTGTTGAT 59.793 38.462 5.39 0.00 0.00 2.57
2265 2275 7.584987 CCTTTTTCTACTAGTGGTTGTTGATG 58.415 38.462 5.39 0.00 0.00 3.07
2266 2276 7.444183 CCTTTTTCTACTAGTGGTTGTTGATGA 59.556 37.037 5.39 0.00 0.00 2.92
2267 2277 8.918202 TTTTTCTACTAGTGGTTGTTGATGAT 57.082 30.769 5.39 0.00 0.00 2.45
2268 2278 7.905604 TTTCTACTAGTGGTTGTTGATGATG 57.094 36.000 5.39 0.00 0.00 3.07
2269 2279 6.850752 TCTACTAGTGGTTGTTGATGATGA 57.149 37.500 5.39 0.00 0.00 2.92
2270 2280 7.423844 TCTACTAGTGGTTGTTGATGATGAT 57.576 36.000 5.39 0.00 0.00 2.45
2271 2281 7.267857 TCTACTAGTGGTTGTTGATGATGATG 58.732 38.462 5.39 0.00 0.00 3.07
2272 2282 5.188434 ACTAGTGGTTGTTGATGATGATGG 58.812 41.667 0.00 0.00 0.00 3.51
2273 2283 2.756760 AGTGGTTGTTGATGATGATGGC 59.243 45.455 0.00 0.00 0.00 4.40
2274 2284 1.744522 TGGTTGTTGATGATGATGGCG 59.255 47.619 0.00 0.00 0.00 5.69
2275 2285 2.016318 GGTTGTTGATGATGATGGCGA 58.984 47.619 0.00 0.00 0.00 5.54
2276 2286 2.620115 GGTTGTTGATGATGATGGCGAT 59.380 45.455 0.00 0.00 0.00 4.58
2277 2287 3.549423 GGTTGTTGATGATGATGGCGATG 60.549 47.826 0.00 0.00 0.00 3.84
2278 2288 2.223745 TGTTGATGATGATGGCGATGG 58.776 47.619 0.00 0.00 0.00 3.51
2279 2289 2.158784 TGTTGATGATGATGGCGATGGA 60.159 45.455 0.00 0.00 0.00 3.41
2280 2290 3.079578 GTTGATGATGATGGCGATGGAT 58.920 45.455 0.00 0.00 0.00 3.41
2281 2291 3.428413 TGATGATGATGGCGATGGATT 57.572 42.857 0.00 0.00 0.00 3.01
2282 2292 3.340928 TGATGATGATGGCGATGGATTC 58.659 45.455 0.00 0.00 0.00 2.52
2283 2293 2.189594 TGATGATGGCGATGGATTCC 57.810 50.000 0.00 0.00 0.00 3.01
2284 2294 1.271543 TGATGATGGCGATGGATTCCC 60.272 52.381 0.00 0.00 0.00 3.97
2285 2295 0.038744 ATGATGGCGATGGATTCCCC 59.961 55.000 0.00 0.00 0.00 4.81
2286 2296 1.061905 TGATGGCGATGGATTCCCCT 61.062 55.000 0.00 0.00 35.38 4.79
2287 2297 0.322008 GATGGCGATGGATTCCCCTC 60.322 60.000 0.00 0.00 35.38 4.30
2288 2298 0.769776 ATGGCGATGGATTCCCCTCT 60.770 55.000 0.00 0.00 35.38 3.69
2289 2299 1.373059 GGCGATGGATTCCCCTCTC 59.627 63.158 0.00 0.00 35.38 3.20
2290 2300 1.373059 GCGATGGATTCCCCTCTCC 59.627 63.158 0.00 0.00 35.38 3.71
2291 2301 1.668294 CGATGGATTCCCCTCTCCG 59.332 63.158 0.00 0.00 34.05 4.63
2292 2302 1.821061 CGATGGATTCCCCTCTCCGG 61.821 65.000 0.00 0.00 34.05 5.14
2293 2303 0.471971 GATGGATTCCCCTCTCCGGA 60.472 60.000 2.93 2.93 34.05 5.14
2294 2304 0.472734 ATGGATTCCCCTCTCCGGAG 60.473 60.000 26.32 26.32 39.18 4.63
2295 2305 2.512355 GGATTCCCCTCTCCGGAGC 61.512 68.421 27.39 9.73 38.21 4.70
2296 2306 2.446802 ATTCCCCTCTCCGGAGCC 60.447 66.667 27.39 0.00 38.21 4.70
2297 2307 4.798682 TTCCCCTCTCCGGAGCCC 62.799 72.222 27.39 0.00 38.21 5.19
2308 2318 4.144703 GGAGCCCCGAACGGACTC 62.145 72.222 15.07 18.11 37.47 3.36
2309 2319 3.069318 GAGCCCCGAACGGACTCT 61.069 66.667 15.07 7.99 36.21 3.24
2310 2320 1.751927 GAGCCCCGAACGGACTCTA 60.752 63.158 15.07 0.00 36.21 2.43
2311 2321 1.726533 GAGCCCCGAACGGACTCTAG 61.727 65.000 15.07 0.00 36.21 2.43
2312 2322 1.751927 GCCCCGAACGGACTCTAGA 60.752 63.158 15.07 0.00 37.50 2.43
2313 2323 1.108132 GCCCCGAACGGACTCTAGAT 61.108 60.000 15.07 0.00 37.50 1.98
2314 2324 0.953003 CCCCGAACGGACTCTAGATC 59.047 60.000 15.07 0.00 37.50 2.75
2315 2325 1.676746 CCCGAACGGACTCTAGATCA 58.323 55.000 15.07 0.00 37.50 2.92
2316 2326 1.604755 CCCGAACGGACTCTAGATCAG 59.395 57.143 15.07 0.00 37.50 2.90
2317 2327 1.002251 CCGAACGGACTCTAGATCAGC 60.002 57.143 7.53 0.00 37.50 4.26
2318 2328 1.002251 CGAACGGACTCTAGATCAGCC 60.002 57.143 0.00 0.00 0.00 4.85
2319 2329 1.338655 GAACGGACTCTAGATCAGCCC 59.661 57.143 0.00 0.00 0.00 5.19
2320 2330 0.553819 ACGGACTCTAGATCAGCCCT 59.446 55.000 0.00 0.00 0.00 5.19
2321 2331 1.243902 CGGACTCTAGATCAGCCCTC 58.756 60.000 0.00 0.00 0.00 4.30
2322 2332 1.627864 GGACTCTAGATCAGCCCTCC 58.372 60.000 0.00 0.00 0.00 4.30
2323 2333 1.627864 GACTCTAGATCAGCCCTCCC 58.372 60.000 0.00 0.00 0.00 4.30
2324 2334 0.178975 ACTCTAGATCAGCCCTCCCG 60.179 60.000 0.00 0.00 0.00 5.14
2325 2335 0.111446 CTCTAGATCAGCCCTCCCGA 59.889 60.000 0.00 0.00 0.00 5.14
2326 2336 0.111446 TCTAGATCAGCCCTCCCGAG 59.889 60.000 0.00 0.00 0.00 4.63
2327 2337 0.111446 CTAGATCAGCCCTCCCGAGA 59.889 60.000 0.00 0.00 0.00 4.04
2328 2338 0.111446 TAGATCAGCCCTCCCGAGAG 59.889 60.000 0.00 0.00 40.09 3.20
2329 2339 1.152652 GATCAGCCCTCCCGAGAGA 60.153 63.158 0.00 0.00 43.39 3.10
2330 2340 1.152567 ATCAGCCCTCCCGAGAGAG 60.153 63.158 0.00 0.00 43.39 3.20
2331 2341 1.943730 ATCAGCCCTCCCGAGAGAGT 61.944 60.000 0.00 0.00 43.39 3.24
2332 2342 1.684049 CAGCCCTCCCGAGAGAGTT 60.684 63.158 0.00 0.00 43.39 3.01
2333 2343 1.079438 AGCCCTCCCGAGAGAGTTT 59.921 57.895 0.00 0.00 43.39 2.66
2334 2344 0.335361 AGCCCTCCCGAGAGAGTTTA 59.665 55.000 0.00 0.00 43.39 2.01
2335 2345 0.747852 GCCCTCCCGAGAGAGTTTAG 59.252 60.000 0.00 0.00 43.39 1.85
2336 2346 1.404843 CCCTCCCGAGAGAGTTTAGG 58.595 60.000 0.00 0.00 43.39 2.69
2337 2347 1.404843 CCTCCCGAGAGAGTTTAGGG 58.595 60.000 0.00 0.00 43.39 3.53
2338 2348 0.747852 CTCCCGAGAGAGTTTAGGGC 59.252 60.000 0.00 0.00 43.39 5.19
2339 2349 0.335361 TCCCGAGAGAGTTTAGGGCT 59.665 55.000 0.00 0.00 41.76 5.19
2340 2350 1.196012 CCCGAGAGAGTTTAGGGCTT 58.804 55.000 0.00 0.00 35.09 4.35
2341 2351 1.134670 CCCGAGAGAGTTTAGGGCTTG 60.135 57.143 0.00 0.00 35.09 4.01
2342 2352 1.134670 CCGAGAGAGTTTAGGGCTTGG 60.135 57.143 0.00 0.00 0.00 3.61
2343 2353 1.740718 CGAGAGAGTTTAGGGCTTGGC 60.741 57.143 0.00 0.00 0.00 4.52
2344 2354 0.250513 AGAGAGTTTAGGGCTTGGCG 59.749 55.000 0.00 0.00 0.00 5.69
2345 2355 0.744771 GAGAGTTTAGGGCTTGGCGG 60.745 60.000 0.00 0.00 0.00 6.13
2346 2356 2.361230 AGTTTAGGGCTTGGCGGC 60.361 61.111 0.00 0.00 37.49 6.53
2347 2357 3.810896 GTTTAGGGCTTGGCGGCG 61.811 66.667 0.51 0.51 39.52 6.46
2361 2371 2.723746 GGCGGCTCCGTATCGTAA 59.276 61.111 10.24 0.00 42.09 3.18
2362 2372 1.066257 GGCGGCTCCGTATCGTAAA 59.934 57.895 10.24 0.00 42.09 2.01
2363 2373 0.528249 GGCGGCTCCGTATCGTAAAA 60.528 55.000 10.24 0.00 42.09 1.52
2364 2374 0.573987 GCGGCTCCGTATCGTAAAAC 59.426 55.000 10.24 0.00 42.09 2.43
2365 2375 1.912001 CGGCTCCGTATCGTAAAACA 58.088 50.000 0.00 0.00 34.35 2.83
2366 2376 1.585214 CGGCTCCGTATCGTAAAACAC 59.415 52.381 0.00 0.00 34.35 3.32
2367 2377 3.901298 CGGCTCCGTATCGTAAAACACG 61.901 54.545 0.00 0.00 42.36 4.49
2381 2391 6.541111 GTAAAACACGATGAACCTTTCTCT 57.459 37.500 0.00 0.00 0.00 3.10
2382 2392 5.674933 AAAACACGATGAACCTTTCTCTC 57.325 39.130 0.00 0.00 0.00 3.20
2383 2393 4.608948 AACACGATGAACCTTTCTCTCT 57.391 40.909 0.00 0.00 0.00 3.10
2384 2394 5.723672 AACACGATGAACCTTTCTCTCTA 57.276 39.130 0.00 0.00 0.00 2.43
2385 2395 5.723672 ACACGATGAACCTTTCTCTCTAA 57.276 39.130 0.00 0.00 0.00 2.10
2386 2396 6.287589 ACACGATGAACCTTTCTCTCTAAT 57.712 37.500 0.00 0.00 0.00 1.73
2387 2397 6.702329 ACACGATGAACCTTTCTCTCTAATT 58.298 36.000 0.00 0.00 0.00 1.40
2388 2398 7.162082 ACACGATGAACCTTTCTCTCTAATTT 58.838 34.615 0.00 0.00 0.00 1.82
2389 2399 7.661847 ACACGATGAACCTTTCTCTCTAATTTT 59.338 33.333 0.00 0.00 0.00 1.82
2390 2400 8.507249 CACGATGAACCTTTCTCTCTAATTTTT 58.493 33.333 0.00 0.00 0.00 1.94
2412 2422 7.852971 TTTTTATCTTCCCGAACACGAATAT 57.147 32.000 0.00 0.00 0.00 1.28
2413 2423 8.945481 TTTTTATCTTCCCGAACACGAATATA 57.055 30.769 0.00 0.00 0.00 0.86
2414 2424 9.550406 TTTTTATCTTCCCGAACACGAATATAT 57.450 29.630 0.00 0.00 0.00 0.86
2415 2425 8.528917 TTTATCTTCCCGAACACGAATATATG 57.471 34.615 0.00 0.00 0.00 1.78
2416 2426 4.878439 TCTTCCCGAACACGAATATATGG 58.122 43.478 0.00 0.00 0.00 2.74
2417 2427 4.585581 TCTTCCCGAACACGAATATATGGA 59.414 41.667 0.00 0.00 0.00 3.41
2418 2428 4.514781 TCCCGAACACGAATATATGGAG 57.485 45.455 0.00 0.00 0.00 3.86
2419 2429 3.893200 TCCCGAACACGAATATATGGAGT 59.107 43.478 0.00 0.00 0.00 3.85
2420 2430 4.342951 TCCCGAACACGAATATATGGAGTT 59.657 41.667 0.00 0.00 0.00 3.01
2421 2431 4.447724 CCCGAACACGAATATATGGAGTTG 59.552 45.833 0.00 0.00 0.00 3.16
2422 2432 4.447724 CCGAACACGAATATATGGAGTTGG 59.552 45.833 0.00 4.49 0.00 3.77
2423 2433 5.286438 CGAACACGAATATATGGAGTTGGA 58.714 41.667 0.00 0.00 0.00 3.53
2424 2434 5.402568 CGAACACGAATATATGGAGTTGGAG 59.597 44.000 0.00 0.00 0.00 3.86
2425 2435 5.871396 ACACGAATATATGGAGTTGGAGT 57.129 39.130 0.00 0.00 0.00 3.85
2426 2436 6.235231 ACACGAATATATGGAGTTGGAGTT 57.765 37.500 0.00 0.00 0.00 3.01
2427 2437 6.049149 ACACGAATATATGGAGTTGGAGTTG 58.951 40.000 0.00 0.00 0.00 3.16
2428 2438 6.127168 ACACGAATATATGGAGTTGGAGTTGA 60.127 38.462 0.00 0.00 0.00 3.18
2429 2439 6.422100 CACGAATATATGGAGTTGGAGTTGAG 59.578 42.308 0.00 0.00 0.00 3.02
2430 2440 5.928839 CGAATATATGGAGTTGGAGTTGAGG 59.071 44.000 0.00 0.00 0.00 3.86
2431 2441 6.463049 CGAATATATGGAGTTGGAGTTGAGGT 60.463 42.308 0.00 0.00 0.00 3.85
2432 2442 4.762289 ATATGGAGTTGGAGTTGAGGTC 57.238 45.455 0.00 0.00 0.00 3.85
2433 2443 1.801242 TGGAGTTGGAGTTGAGGTCA 58.199 50.000 0.00 0.00 0.00 4.02
2434 2444 1.694150 TGGAGTTGGAGTTGAGGTCAG 59.306 52.381 0.00 0.00 0.00 3.51
2435 2445 1.694696 GGAGTTGGAGTTGAGGTCAGT 59.305 52.381 0.00 0.00 0.00 3.41
2436 2446 2.548920 GGAGTTGGAGTTGAGGTCAGTG 60.549 54.545 0.00 0.00 0.00 3.66
2437 2447 1.417890 AGTTGGAGTTGAGGTCAGTGG 59.582 52.381 0.00 0.00 0.00 4.00
2438 2448 1.416401 GTTGGAGTTGAGGTCAGTGGA 59.584 52.381 0.00 0.00 0.00 4.02
2439 2449 1.342074 TGGAGTTGAGGTCAGTGGAG 58.658 55.000 0.00 0.00 0.00 3.86
2440 2450 0.036858 GGAGTTGAGGTCAGTGGAGC 60.037 60.000 0.00 0.00 41.86 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.229306 CCTGGATAACTTAATATCTGCAGCAAA 59.771 37.037 9.47 0.00 33.63 3.68
1 2 6.712095 CCTGGATAACTTAATATCTGCAGCAA 59.288 38.462 9.47 0.00 33.63 3.91
2 3 6.183361 ACCTGGATAACTTAATATCTGCAGCA 60.183 38.462 9.47 0.00 33.63 4.41
3 4 6.148480 CACCTGGATAACTTAATATCTGCAGC 59.852 42.308 9.47 0.00 33.63 5.25
4 5 7.172190 CACACCTGGATAACTTAATATCTGCAG 59.828 40.741 7.63 7.63 33.63 4.41
5 6 6.992123 CACACCTGGATAACTTAATATCTGCA 59.008 38.462 0.00 0.00 33.63 4.41
6 7 6.428159 CCACACCTGGATAACTTAATATCTGC 59.572 42.308 0.00 0.00 40.55 4.26
7 8 7.509546 ACCACACCTGGATAACTTAATATCTG 58.490 38.462 0.00 0.00 40.55 2.90
8 9 7.691993 ACCACACCTGGATAACTTAATATCT 57.308 36.000 0.00 0.00 40.55 1.98
9 10 7.990886 TCAACCACACCTGGATAACTTAATATC 59.009 37.037 0.00 0.00 40.55 1.63
10 11 7.867921 TCAACCACACCTGGATAACTTAATAT 58.132 34.615 0.00 0.00 40.55 1.28
11 12 7.260387 TCAACCACACCTGGATAACTTAATA 57.740 36.000 0.00 0.00 40.55 0.98
12 13 6.134535 TCAACCACACCTGGATAACTTAAT 57.865 37.500 0.00 0.00 40.55 1.40
13 14 5.570205 TCAACCACACCTGGATAACTTAA 57.430 39.130 0.00 0.00 40.55 1.85
14 15 5.570205 TTCAACCACACCTGGATAACTTA 57.430 39.130 0.00 0.00 40.55 2.24
15 16 4.447138 TTCAACCACACCTGGATAACTT 57.553 40.909 0.00 0.00 40.55 2.66
16 17 4.657814 ATTCAACCACACCTGGATAACT 57.342 40.909 0.00 0.00 40.55 2.24
17 18 4.764823 TCAATTCAACCACACCTGGATAAC 59.235 41.667 0.00 0.00 40.55 1.89
18 19 4.764823 GTCAATTCAACCACACCTGGATAA 59.235 41.667 0.00 0.00 40.55 1.75
19 20 4.202514 TGTCAATTCAACCACACCTGGATA 60.203 41.667 0.00 0.00 40.55 2.59
20 21 3.157087 GTCAATTCAACCACACCTGGAT 58.843 45.455 0.00 0.00 40.55 3.41
21 22 2.092158 TGTCAATTCAACCACACCTGGA 60.092 45.455 0.00 0.00 40.55 3.86
22 23 2.305928 TGTCAATTCAACCACACCTGG 58.694 47.619 0.00 0.00 44.26 4.45
23 24 3.381272 AGTTGTCAATTCAACCACACCTG 59.619 43.478 6.44 0.00 45.90 4.00
24 25 3.631250 AGTTGTCAATTCAACCACACCT 58.369 40.909 6.44 0.00 45.90 4.00
25 26 3.380004 TGAGTTGTCAATTCAACCACACC 59.620 43.478 8.22 0.00 45.90 4.16
26 27 4.630894 TGAGTTGTCAATTCAACCACAC 57.369 40.909 8.22 0.00 45.90 3.82
27 28 4.992688 GTTGAGTTGTCAATTCAACCACA 58.007 39.130 29.81 8.46 46.35 4.17
32 33 6.691754 TTAGCAGTTGAGTTGTCAATTCAA 57.308 33.333 16.95 16.95 44.58 2.69
33 34 6.882610 ATTAGCAGTTGAGTTGTCAATTCA 57.117 33.333 6.67 6.67 44.58 2.57
34 35 8.034058 AGTATTAGCAGTTGAGTTGTCAATTC 57.966 34.615 1.25 1.25 44.58 2.17
35 36 7.986085 AGTATTAGCAGTTGAGTTGTCAATT 57.014 32.000 0.00 0.00 44.58 2.32
36 37 7.661437 TCAAGTATTAGCAGTTGAGTTGTCAAT 59.339 33.333 0.00 0.00 44.58 2.57
37 38 6.989759 TCAAGTATTAGCAGTTGAGTTGTCAA 59.010 34.615 0.00 0.00 40.55 3.18
38 39 6.521162 TCAAGTATTAGCAGTTGAGTTGTCA 58.479 36.000 0.00 0.00 33.85 3.58
39 40 7.054855 CTCAAGTATTAGCAGTTGAGTTGTC 57.945 40.000 11.00 0.00 45.15 3.18
69 70 1.408969 GACACAAGGGGAGCCAAAAA 58.591 50.000 0.00 0.00 0.00 1.94
70 71 0.821711 CGACACAAGGGGAGCCAAAA 60.822 55.000 0.00 0.00 0.00 2.44
71 72 1.228124 CGACACAAGGGGAGCCAAA 60.228 57.895 0.00 0.00 0.00 3.28
72 73 1.701031 TTCGACACAAGGGGAGCCAA 61.701 55.000 0.00 0.00 0.00 4.52
73 74 1.488705 ATTCGACACAAGGGGAGCCA 61.489 55.000 0.00 0.00 0.00 4.75
74 75 0.744771 GATTCGACACAAGGGGAGCC 60.745 60.000 0.00 0.00 0.00 4.70
75 76 0.036388 TGATTCGACACAAGGGGAGC 60.036 55.000 0.00 0.00 0.00 4.70
76 77 2.472695 TTGATTCGACACAAGGGGAG 57.527 50.000 0.00 0.00 0.00 4.30
77 78 4.561500 TTATTGATTCGACACAAGGGGA 57.438 40.909 8.90 0.00 0.00 4.81
78 79 5.835113 ATTTATTGATTCGACACAAGGGG 57.165 39.130 8.90 0.00 0.00 4.79
79 80 6.531240 CCAAATTTATTGATTCGACACAAGGG 59.469 38.462 8.90 0.00 0.00 3.95
80 81 6.531240 CCCAAATTTATTGATTCGACACAAGG 59.469 38.462 8.90 3.91 0.00 3.61
81 82 7.090173 ACCCAAATTTATTGATTCGACACAAG 58.910 34.615 8.90 0.00 0.00 3.16
82 83 6.987386 ACCCAAATTTATTGATTCGACACAA 58.013 32.000 6.03 6.03 0.00 3.33
83 84 6.582677 ACCCAAATTTATTGATTCGACACA 57.417 33.333 0.00 0.00 0.00 3.72
84 85 7.087639 TCAACCCAAATTTATTGATTCGACAC 58.912 34.615 7.33 0.00 0.00 3.67
85 86 7.220741 TCAACCCAAATTTATTGATTCGACA 57.779 32.000 7.33 0.00 0.00 4.35
86 87 8.702163 ATTCAACCCAAATTTATTGATTCGAC 57.298 30.769 10.73 0.00 31.45 4.20
87 88 9.796120 GTATTCAACCCAAATTTATTGATTCGA 57.204 29.630 10.73 0.00 31.45 3.71
88 89 9.801873 AGTATTCAACCCAAATTTATTGATTCG 57.198 29.630 10.73 0.00 31.45 3.34
104 105 5.354513 GCTTTCAAGGGTAGAGTATTCAACC 59.645 44.000 0.00 0.00 0.00 3.77
105 106 6.092807 CAGCTTTCAAGGGTAGAGTATTCAAC 59.907 42.308 0.00 0.00 0.00 3.18
106 107 6.173339 CAGCTTTCAAGGGTAGAGTATTCAA 58.827 40.000 0.00 0.00 0.00 2.69
107 108 5.248477 ACAGCTTTCAAGGGTAGAGTATTCA 59.752 40.000 0.00 0.00 0.00 2.57
108 109 5.735766 ACAGCTTTCAAGGGTAGAGTATTC 58.264 41.667 0.00 0.00 0.00 1.75
109 110 5.763876 ACAGCTTTCAAGGGTAGAGTATT 57.236 39.130 0.00 0.00 0.00 1.89
110 111 5.491982 CAACAGCTTTCAAGGGTAGAGTAT 58.508 41.667 0.00 0.00 0.00 2.12
111 112 4.802918 GCAACAGCTTTCAAGGGTAGAGTA 60.803 45.833 0.00 0.00 0.00 2.59
112 113 3.744660 CAACAGCTTTCAAGGGTAGAGT 58.255 45.455 0.00 0.00 0.00 3.24
113 114 2.485814 GCAACAGCTTTCAAGGGTAGAG 59.514 50.000 0.00 0.00 0.00 2.43
114 115 2.504367 GCAACAGCTTTCAAGGGTAGA 58.496 47.619 0.00 0.00 0.00 2.59
115 116 1.197721 CGCAACAGCTTTCAAGGGTAG 59.802 52.381 0.00 0.00 0.00 3.18
116 117 1.202710 TCGCAACAGCTTTCAAGGGTA 60.203 47.619 0.00 0.00 0.00 3.69
117 118 0.465460 TCGCAACAGCTTTCAAGGGT 60.465 50.000 0.00 0.00 0.00 4.34
118 119 0.883833 ATCGCAACAGCTTTCAAGGG 59.116 50.000 0.00 0.00 0.00 3.95
119 120 1.135575 GGATCGCAACAGCTTTCAAGG 60.136 52.381 0.00 0.00 0.00 3.61
120 121 1.135575 GGGATCGCAACAGCTTTCAAG 60.136 52.381 4.64 0.00 0.00 3.02
121 122 0.881118 GGGATCGCAACAGCTTTCAA 59.119 50.000 4.64 0.00 0.00 2.69
122 123 0.960364 GGGGATCGCAACAGCTTTCA 60.960 55.000 12.32 0.00 0.00 2.69
123 124 0.678048 AGGGGATCGCAACAGCTTTC 60.678 55.000 12.32 0.00 0.00 2.62
124 125 0.618458 TAGGGGATCGCAACAGCTTT 59.382 50.000 12.32 0.00 0.00 3.51
125 126 0.107654 GTAGGGGATCGCAACAGCTT 60.108 55.000 12.32 0.00 0.00 3.74
126 127 1.264749 TGTAGGGGATCGCAACAGCT 61.265 55.000 12.32 1.62 0.00 4.24
127 128 1.090052 GTGTAGGGGATCGCAACAGC 61.090 60.000 12.32 6.69 0.00 4.40
128 129 0.537188 AGTGTAGGGGATCGCAACAG 59.463 55.000 12.32 0.00 0.00 3.16
129 130 0.981183 AAGTGTAGGGGATCGCAACA 59.019 50.000 12.32 11.91 0.00 3.33
130 131 1.338769 ACAAGTGTAGGGGATCGCAAC 60.339 52.381 12.32 9.48 0.00 4.17
131 132 0.981183 ACAAGTGTAGGGGATCGCAA 59.019 50.000 12.32 0.00 0.00 4.85
132 133 0.249120 CACAAGTGTAGGGGATCGCA 59.751 55.000 12.32 0.00 0.00 5.10
133 134 0.462047 CCACAAGTGTAGGGGATCGC 60.462 60.000 0.06 0.06 0.00 4.58
134 135 0.178068 CCCACAAGTGTAGGGGATCG 59.822 60.000 1.36 0.00 43.57 3.69
140 141 4.020573 TGTCTGATAACCCACAAGTGTAGG 60.021 45.833 0.00 0.00 32.88 3.18
141 142 5.147330 TGTCTGATAACCCACAAGTGTAG 57.853 43.478 0.00 0.00 0.00 2.74
142 143 5.755409 ATGTCTGATAACCCACAAGTGTA 57.245 39.130 0.00 0.00 0.00 2.90
143 144 4.640771 ATGTCTGATAACCCACAAGTGT 57.359 40.909 0.00 0.00 0.00 3.55
144 145 5.964958 AAATGTCTGATAACCCACAAGTG 57.035 39.130 0.00 0.00 0.00 3.16
145 146 5.243730 CCAAAATGTCTGATAACCCACAAGT 59.756 40.000 0.00 0.00 0.00 3.16
146 147 5.243730 ACCAAAATGTCTGATAACCCACAAG 59.756 40.000 0.00 0.00 0.00 3.16
147 148 5.010516 CACCAAAATGTCTGATAACCCACAA 59.989 40.000 0.00 0.00 0.00 3.33
148 149 4.522405 CACCAAAATGTCTGATAACCCACA 59.478 41.667 0.00 0.00 0.00 4.17
149 150 4.522789 ACACCAAAATGTCTGATAACCCAC 59.477 41.667 0.00 0.00 0.00 4.61
150 151 4.735369 ACACCAAAATGTCTGATAACCCA 58.265 39.130 0.00 0.00 0.00 4.51
151 152 6.827586 TTACACCAAAATGTCTGATAACCC 57.172 37.500 0.00 0.00 33.85 4.11
152 153 6.751888 GCATTACACCAAAATGTCTGATAACC 59.248 38.462 0.00 0.00 36.82 2.85
153 154 7.273381 GTGCATTACACCAAAATGTCTGATAAC 59.727 37.037 0.00 0.00 44.02 1.89
154 155 7.312154 GTGCATTACACCAAAATGTCTGATAA 58.688 34.615 0.00 0.00 44.02 1.75
155 156 6.851609 GTGCATTACACCAAAATGTCTGATA 58.148 36.000 0.00 0.00 44.02 2.15
156 157 5.713025 GTGCATTACACCAAAATGTCTGAT 58.287 37.500 0.00 0.00 44.02 2.90
157 158 5.119931 GTGCATTACACCAAAATGTCTGA 57.880 39.130 0.00 0.00 44.02 3.27
242 243 7.383843 GGTTTGTTGAGTCTTTTCTTGAAAACA 59.616 33.333 4.61 0.00 0.00 2.83
261 262 5.067273 TCATTGGTTGACTATCGGTTTGTT 58.933 37.500 0.00 0.00 0.00 2.83
450 451 0.101579 TAAAGCGCCGATCATCGTCA 59.898 50.000 2.29 0.00 38.40 4.35
600 603 2.409055 GCGTCTTGCATGGCATGGA 61.409 57.895 27.48 23.25 45.45 3.41
680 683 2.092267 TCCACATCATGATGGGTCCTTG 60.092 50.000 33.31 22.48 40.54 3.61
1054 1057 6.313658 TCAGTACAAAATTCGACCAGATGATG 59.686 38.462 0.00 0.00 0.00 3.07
1117 1120 6.936900 ACTAGTGGCACATATTGACCATAATC 59.063 38.462 21.41 0.00 44.52 1.75
1158 1161 5.365605 CAGGGTATCTCCATGGTAGTTACAA 59.634 44.000 12.58 0.00 43.43 2.41
1159 1162 4.899457 CAGGGTATCTCCATGGTAGTTACA 59.101 45.833 12.58 0.00 43.43 2.41
1202 1205 0.865111 CAAAAGATGCACGGACGTCA 59.135 50.000 18.91 0.00 0.00 4.35
1316 1319 0.661552 CGAAGGCTGCCATTCTGATG 59.338 55.000 22.65 5.50 0.00 3.07
1385 1388 5.163205 TGTCTCCACTTCTTTGAGAAATCCA 60.163 40.000 0.00 0.00 36.93 3.41
1447 1450 6.015095 CCTTTTGCTTTCAAGAACCTCCTTAT 60.015 38.462 0.00 0.00 33.12 1.73
1586 1589 7.330262 TGTTCTTAGCACATGATCATCAGTAA 58.670 34.615 4.86 1.29 0.00 2.24
1920 1926 4.076394 GTCCTCTCTTATCTCCGTGCTAT 58.924 47.826 0.00 0.00 0.00 2.97
1946 1952 7.339976 GGTTGGTATAGGTAGCTAATAGAGAGG 59.660 44.444 5.62 0.00 0.00 3.69
1985 1991 1.146359 GGAGGTGGTTTAGGGGTTTGT 59.854 52.381 0.00 0.00 0.00 2.83
1986 1992 1.427753 AGGAGGTGGTTTAGGGGTTTG 59.572 52.381 0.00 0.00 0.00 2.93
2150 2160 0.843984 GCCCTATGCCTTTAGTCCCA 59.156 55.000 0.00 0.00 0.00 4.37
2163 2173 3.584294 AGGGTCGTTACTAATGCCCTAT 58.416 45.455 15.90 1.41 40.21 2.57
2203 2213 0.399949 ATAAGGCCCATCTGTCCCGA 60.400 55.000 0.00 0.00 0.00 5.14
2238 2248 5.306114 ACAACCACTAGTAGAAAAAGGCT 57.694 39.130 3.59 0.00 0.00 4.58
2258 2268 2.158784 TCCATCGCCATCATCATCAACA 60.159 45.455 0.00 0.00 0.00 3.33
2259 2269 2.497138 TCCATCGCCATCATCATCAAC 58.503 47.619 0.00 0.00 0.00 3.18
2260 2270 2.934886 TCCATCGCCATCATCATCAA 57.065 45.000 0.00 0.00 0.00 2.57
2261 2271 3.340928 GAATCCATCGCCATCATCATCA 58.659 45.455 0.00 0.00 0.00 3.07
2262 2272 2.681848 GGAATCCATCGCCATCATCATC 59.318 50.000 0.00 0.00 0.00 2.92
2263 2273 2.619849 GGGAATCCATCGCCATCATCAT 60.620 50.000 0.09 0.00 35.03 2.45
2264 2274 1.271543 GGGAATCCATCGCCATCATCA 60.272 52.381 0.09 0.00 35.03 3.07
2265 2275 1.457346 GGGAATCCATCGCCATCATC 58.543 55.000 0.09 0.00 35.03 2.92
2266 2276 3.658398 GGGAATCCATCGCCATCAT 57.342 52.632 0.09 0.00 35.03 2.45
2274 2284 0.471971 TCCGGAGAGGGGAATCCATC 60.472 60.000 0.00 0.00 43.71 3.51
2275 2285 0.472734 CTCCGGAGAGGGGAATCCAT 60.473 60.000 28.21 0.00 46.06 3.41
2276 2286 1.075226 CTCCGGAGAGGGGAATCCA 60.075 63.158 28.21 0.00 46.06 3.41
2277 2287 2.512355 GCTCCGGAGAGGGGAATCC 61.512 68.421 35.69 9.98 46.06 3.01
2278 2288 2.512355 GGCTCCGGAGAGGGGAATC 61.512 68.421 35.69 14.09 46.06 2.52
2279 2289 2.446802 GGCTCCGGAGAGGGGAAT 60.447 66.667 35.69 0.00 46.06 3.01
2280 2290 4.798682 GGGCTCCGGAGAGGGGAA 62.799 72.222 35.69 0.00 46.06 3.97
2294 2304 1.108132 ATCTAGAGTCCGTTCGGGGC 61.108 60.000 11.37 5.21 42.41 5.80
2295 2305 0.953003 GATCTAGAGTCCGTTCGGGG 59.047 60.000 11.37 0.00 36.01 5.73
2296 2306 1.604755 CTGATCTAGAGTCCGTTCGGG 59.395 57.143 11.37 0.00 37.02 5.14
2297 2307 1.002251 GCTGATCTAGAGTCCGTTCGG 60.002 57.143 4.74 4.74 0.00 4.30
2298 2308 1.002251 GGCTGATCTAGAGTCCGTTCG 60.002 57.143 0.00 0.00 0.00 3.95
2299 2309 1.338655 GGGCTGATCTAGAGTCCGTTC 59.661 57.143 0.00 0.00 0.00 3.95
2300 2310 1.063567 AGGGCTGATCTAGAGTCCGTT 60.064 52.381 0.00 0.00 0.00 4.44
2301 2311 0.553819 AGGGCTGATCTAGAGTCCGT 59.446 55.000 0.00 0.00 0.00 4.69
2302 2312 1.243902 GAGGGCTGATCTAGAGTCCG 58.756 60.000 0.00 0.00 0.00 4.79
2303 2313 1.627864 GGAGGGCTGATCTAGAGTCC 58.372 60.000 0.00 0.00 0.00 3.85
2304 2314 1.627864 GGGAGGGCTGATCTAGAGTC 58.372 60.000 0.00 0.00 0.00 3.36
2305 2315 0.178975 CGGGAGGGCTGATCTAGAGT 60.179 60.000 0.00 0.00 0.00 3.24
2306 2316 0.111446 TCGGGAGGGCTGATCTAGAG 59.889 60.000 0.00 0.00 0.00 2.43
2307 2317 0.111446 CTCGGGAGGGCTGATCTAGA 59.889 60.000 0.00 0.00 0.00 2.43
2308 2318 0.111446 TCTCGGGAGGGCTGATCTAG 59.889 60.000 0.00 0.00 0.00 2.43
2309 2319 0.111446 CTCTCGGGAGGGCTGATCTA 59.889 60.000 3.69 0.00 36.03 1.98
2310 2320 1.152567 CTCTCGGGAGGGCTGATCT 60.153 63.158 3.69 0.00 36.03 2.75
2311 2321 1.152652 TCTCTCGGGAGGGCTGATC 60.153 63.158 13.54 0.00 39.86 2.92
2312 2322 1.152567 CTCTCTCGGGAGGGCTGAT 60.153 63.158 13.54 0.00 39.86 2.90
2313 2323 2.156496 AACTCTCTCGGGAGGGCTGA 62.156 60.000 13.56 0.00 43.59 4.26
2314 2324 1.261238 AAACTCTCTCGGGAGGGCTG 61.261 60.000 13.56 3.05 43.59 4.85
2315 2325 0.335361 TAAACTCTCTCGGGAGGGCT 59.665 55.000 13.56 0.00 43.59 5.19
2316 2326 0.747852 CTAAACTCTCTCGGGAGGGC 59.252 60.000 13.56 0.00 43.59 5.19
2317 2327 1.404843 CCTAAACTCTCTCGGGAGGG 58.595 60.000 11.71 11.71 45.20 4.30
2318 2328 1.404843 CCCTAAACTCTCTCGGGAGG 58.595 60.000 13.54 5.83 39.86 4.30
2319 2329 0.747852 GCCCTAAACTCTCTCGGGAG 59.252 60.000 5.75 5.75 40.73 4.30
2320 2330 0.335361 AGCCCTAAACTCTCTCGGGA 59.665 55.000 0.00 0.00 37.05 5.14
2321 2331 1.134670 CAAGCCCTAAACTCTCTCGGG 60.135 57.143 0.00 0.00 37.97 5.14
2322 2332 1.134670 CCAAGCCCTAAACTCTCTCGG 60.135 57.143 0.00 0.00 0.00 4.63
2323 2333 1.740718 GCCAAGCCCTAAACTCTCTCG 60.741 57.143 0.00 0.00 0.00 4.04
2324 2334 1.740718 CGCCAAGCCCTAAACTCTCTC 60.741 57.143 0.00 0.00 0.00 3.20
2325 2335 0.250513 CGCCAAGCCCTAAACTCTCT 59.749 55.000 0.00 0.00 0.00 3.10
2326 2336 0.744771 CCGCCAAGCCCTAAACTCTC 60.745 60.000 0.00 0.00 0.00 3.20
2327 2337 1.299976 CCGCCAAGCCCTAAACTCT 59.700 57.895 0.00 0.00 0.00 3.24
2328 2338 2.407428 GCCGCCAAGCCCTAAACTC 61.407 63.158 0.00 0.00 0.00 3.01
2329 2339 2.361230 GCCGCCAAGCCCTAAACT 60.361 61.111 0.00 0.00 0.00 2.66
2330 2340 3.810896 CGCCGCCAAGCCCTAAAC 61.811 66.667 0.00 0.00 0.00 2.01
2344 2354 0.528249 TTTTACGATACGGAGCCGCC 60.528 55.000 9.14 0.00 44.19 6.13
2345 2355 0.573987 GTTTTACGATACGGAGCCGC 59.426 55.000 9.14 0.00 44.19 6.53
2346 2356 1.585214 GTGTTTTACGATACGGAGCCG 59.415 52.381 7.48 7.48 46.03 5.52
2358 2368 6.424207 AGAGAGAAAGGTTCATCGTGTTTTAC 59.576 38.462 0.00 0.00 0.00 2.01
2359 2369 6.522054 AGAGAGAAAGGTTCATCGTGTTTTA 58.478 36.000 0.00 0.00 0.00 1.52
2360 2370 5.368989 AGAGAGAAAGGTTCATCGTGTTTT 58.631 37.500 0.00 0.00 0.00 2.43
2361 2371 4.962155 AGAGAGAAAGGTTCATCGTGTTT 58.038 39.130 0.00 0.00 0.00 2.83
2362 2372 4.608948 AGAGAGAAAGGTTCATCGTGTT 57.391 40.909 0.00 0.00 0.00 3.32
2363 2373 5.723672 TTAGAGAGAAAGGTTCATCGTGT 57.276 39.130 0.00 0.00 0.00 4.49
2364 2374 7.602517 AAATTAGAGAGAAAGGTTCATCGTG 57.397 36.000 0.00 0.00 0.00 4.35
2365 2375 8.622948 AAAAATTAGAGAGAAAGGTTCATCGT 57.377 30.769 0.00 0.00 0.00 3.73
2388 2398 7.852971 ATATTCGTGTTCGGGAAGATAAAAA 57.147 32.000 0.00 0.00 37.69 1.94
2389 2399 8.984764 CATATATTCGTGTTCGGGAAGATAAAA 58.015 33.333 0.00 0.00 32.17 1.52
2390 2400 7.601130 CCATATATTCGTGTTCGGGAAGATAAA 59.399 37.037 0.00 0.00 32.17 1.40
2391 2401 7.039574 TCCATATATTCGTGTTCGGGAAGATAA 60.040 37.037 0.00 0.00 32.17 1.75
2392 2402 6.434965 TCCATATATTCGTGTTCGGGAAGATA 59.565 38.462 0.00 0.00 37.69 1.98
2393 2403 5.245301 TCCATATATTCGTGTTCGGGAAGAT 59.755 40.000 0.00 0.00 37.69 2.40
2394 2404 4.585581 TCCATATATTCGTGTTCGGGAAGA 59.414 41.667 0.00 0.00 37.69 2.87
2395 2405 4.878439 TCCATATATTCGTGTTCGGGAAG 58.122 43.478 0.00 0.00 37.69 3.46
2396 2406 4.342951 ACTCCATATATTCGTGTTCGGGAA 59.657 41.667 0.00 0.00 37.69 3.97
2397 2407 3.893200 ACTCCATATATTCGTGTTCGGGA 59.107 43.478 0.00 0.00 37.69 5.14
2398 2408 4.252971 ACTCCATATATTCGTGTTCGGG 57.747 45.455 0.00 0.00 37.69 5.14
2399 2409 4.447724 CCAACTCCATATATTCGTGTTCGG 59.552 45.833 0.00 0.00 37.69 4.30
2400 2410 5.286438 TCCAACTCCATATATTCGTGTTCG 58.714 41.667 0.00 0.00 38.55 3.95
2401 2411 6.281405 ACTCCAACTCCATATATTCGTGTTC 58.719 40.000 0.00 0.00 0.00 3.18
2402 2412 6.235231 ACTCCAACTCCATATATTCGTGTT 57.765 37.500 0.00 0.00 0.00 3.32
2403 2413 5.871396 ACTCCAACTCCATATATTCGTGT 57.129 39.130 0.00 0.00 0.00 4.49
2404 2414 6.280643 TCAACTCCAACTCCATATATTCGTG 58.719 40.000 0.00 0.00 0.00 4.35
2405 2415 6.463049 CCTCAACTCCAACTCCATATATTCGT 60.463 42.308 0.00 0.00 0.00 3.85
2406 2416 5.928839 CCTCAACTCCAACTCCATATATTCG 59.071 44.000 0.00 0.00 0.00 3.34
2407 2417 6.831976 ACCTCAACTCCAACTCCATATATTC 58.168 40.000 0.00 0.00 0.00 1.75
2408 2418 6.386927 TGACCTCAACTCCAACTCCATATATT 59.613 38.462 0.00 0.00 0.00 1.28
2409 2419 5.905331 TGACCTCAACTCCAACTCCATATAT 59.095 40.000 0.00 0.00 0.00 0.86
2410 2420 5.277250 TGACCTCAACTCCAACTCCATATA 58.723 41.667 0.00 0.00 0.00 0.86
2411 2421 4.104086 TGACCTCAACTCCAACTCCATAT 58.896 43.478 0.00 0.00 0.00 1.78
2412 2422 3.515502 CTGACCTCAACTCCAACTCCATA 59.484 47.826 0.00 0.00 0.00 2.74
2413 2423 2.304180 CTGACCTCAACTCCAACTCCAT 59.696 50.000 0.00 0.00 0.00 3.41
2414 2424 1.694150 CTGACCTCAACTCCAACTCCA 59.306 52.381 0.00 0.00 0.00 3.86
2415 2425 1.694696 ACTGACCTCAACTCCAACTCC 59.305 52.381 0.00 0.00 0.00 3.85
2416 2426 2.548920 CCACTGACCTCAACTCCAACTC 60.549 54.545 0.00 0.00 0.00 3.01
2417 2427 1.417890 CCACTGACCTCAACTCCAACT 59.582 52.381 0.00 0.00 0.00 3.16
2418 2428 1.416401 TCCACTGACCTCAACTCCAAC 59.584 52.381 0.00 0.00 0.00 3.77
2419 2429 1.694150 CTCCACTGACCTCAACTCCAA 59.306 52.381 0.00 0.00 0.00 3.53
2420 2430 1.342074 CTCCACTGACCTCAACTCCA 58.658 55.000 0.00 0.00 0.00 3.86
2421 2431 0.036858 GCTCCACTGACCTCAACTCC 60.037 60.000 0.00 0.00 0.00 3.85
2422 2432 0.972883 AGCTCCACTGACCTCAACTC 59.027 55.000 0.00 0.00 0.00 3.01
2423 2433 0.972883 GAGCTCCACTGACCTCAACT 59.027 55.000 0.87 0.00 0.00 3.16
2424 2434 0.036858 GGAGCTCCACTGACCTCAAC 60.037 60.000 28.43 0.00 35.64 3.18
2425 2435 0.471780 TGGAGCTCCACTGACCTCAA 60.472 55.000 32.00 4.48 42.01 3.02
2426 2436 0.902048 CTGGAGCTCCACTGACCTCA 60.902 60.000 32.00 7.44 42.01 3.86
2427 2437 1.612395 CCTGGAGCTCCACTGACCTC 61.612 65.000 32.00 2.34 42.01 3.85
2428 2438 1.611851 CCTGGAGCTCCACTGACCT 60.612 63.158 32.00 0.00 42.01 3.85
2429 2439 2.664081 CCCTGGAGCTCCACTGACC 61.664 68.421 32.00 4.67 42.01 4.02
2430 2440 2.664081 CCCCTGGAGCTCCACTGAC 61.664 68.421 32.00 4.77 42.01 3.51
2431 2441 2.284921 CCCCTGGAGCTCCACTGA 60.285 66.667 32.00 11.08 42.01 3.41
2432 2442 3.406200 CCCCCTGGAGCTCCACTG 61.406 72.222 32.00 23.52 42.01 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.