Multiple sequence alignment - TraesCS7A01G121400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G121400 chr7A 100.000 4508 0 0 1 4508 78424683 78420176 0.000000e+00 8325.0
1 TraesCS7A01G121400 chr7A 85.714 154 17 4 4236 4388 78415941 78415792 1.680000e-34 158.0
2 TraesCS7A01G121400 chr7A 95.556 90 3 1 4248 4336 285696840 285696929 4.700000e-30 143.0
3 TraesCS7A01G121400 chr7A 92.929 99 5 2 4237 4333 733832407 733832309 4.700000e-30 143.0
4 TraesCS7A01G121400 chr7A 91.509 106 3 5 4249 4351 80581355 80581457 1.690000e-29 141.0
5 TraesCS7A01G121400 chr7A 100.000 74 0 0 4435 4508 15776982 15776909 2.190000e-28 137.0
6 TraesCS7A01G121400 chr7A 100.000 74 0 0 4435 4508 15805107 15805034 2.190000e-28 137.0
7 TraesCS7A01G121400 chr7B 96.865 1212 35 3 2490 3701 17613203 17611995 0.000000e+00 2025.0
8 TraesCS7A01G121400 chr7B 90.313 1053 58 28 848 1883 17614958 17613933 0.000000e+00 1339.0
9 TraesCS7A01G121400 chr7B 93.592 515 19 7 1963 2466 17613935 17613424 0.000000e+00 756.0
10 TraesCS7A01G121400 chr7B 79.742 775 118 15 34 799 17615777 17615033 3.990000e-145 525.0
11 TraesCS7A01G121400 chr7B 83.138 427 29 15 4124 4508 17611841 17611416 2.580000e-92 350.0
12 TraesCS7A01G121400 chr7B 85.811 148 15 5 4247 4391 17534351 17534207 7.810000e-33 152.0
13 TraesCS7A01G121400 chr7B 93.407 91 5 1 1880 1969 509514031 509514121 2.830000e-27 134.0
14 TraesCS7A01G121400 chr7B 93.421 76 1 3 4007 4082 17611912 17611841 4.770000e-20 110.0
15 TraesCS7A01G121400 chr7D 97.647 1105 23 3 2598 3701 74402640 74401538 0.000000e+00 1893.0
16 TraesCS7A01G121400 chr7D 93.122 756 21 11 1963 2690 74403392 74402640 0.000000e+00 1079.0
17 TraesCS7A01G121400 chr7D 90.683 644 30 17 859 1497 74404360 74403742 0.000000e+00 830.0
18 TraesCS7A01G121400 chr7D 86.640 494 29 17 3910 4372 74401065 74400578 3.110000e-141 512.0
19 TraesCS7A01G121400 chr7D 79.373 766 92 28 2 749 74405148 74404431 3.150000e-131 479.0
20 TraesCS7A01G121400 chr7D 87.363 182 9 2 1706 1883 74403561 74403390 3.560000e-46 196.0
21 TraesCS7A01G121400 chr7D 96.739 92 3 0 4247 4338 74395373 74395282 2.170000e-33 154.0
22 TraesCS7A01G121400 chr7D 86.014 143 17 2 4247 4388 74399241 74399101 2.810000e-32 150.0
23 TraesCS7A01G121400 chr7D 95.556 90 2 1 4421 4508 46965418 46965329 4.700000e-30 143.0
24 TraesCS7A01G121400 chr7D 100.000 74 0 0 4435 4508 16766064 16765991 2.190000e-28 137.0
25 TraesCS7A01G121400 chr7D 97.436 78 2 0 1497 1574 74403709 74403632 2.830000e-27 134.0
26 TraesCS7A01G121400 chr7D 87.611 113 7 6 4225 4330 76728534 76728646 1.700000e-24 124.0
27 TraesCS7A01G121400 chr7D 92.958 71 4 1 1594 1664 74403635 74403566 7.980000e-18 102.0
28 TraesCS7A01G121400 chr7D 90.698 43 1 3 3860 3901 414512778 414512818 2.000000e-03 54.7
29 TraesCS7A01G121400 chr2B 87.915 331 31 8 990 1312 407225455 407225126 9.150000e-102 381.0
30 TraesCS7A01G121400 chr2B 88.614 202 22 1 2458 2659 42881504 42881304 1.250000e-60 244.0
31 TraesCS7A01G121400 chr2B 88.177 203 22 2 2458 2659 42849670 42849469 1.620000e-59 241.0
32 TraesCS7A01G121400 chr2B 88.119 202 23 1 2458 2659 42711508 42711308 5.830000e-59 239.0
33 TraesCS7A01G121400 chr2B 88.119 202 23 1 2458 2659 42778373 42778173 5.830000e-59 239.0
34 TraesCS7A01G121400 chr2B 95.455 88 2 2 1880 1965 70878984 70878897 6.080000e-29 139.0
35 TraesCS7A01G121400 chr1D 84.195 329 39 5 987 1309 480672742 480673063 1.580000e-79 307.0
36 TraesCS7A01G121400 chr1D 94.186 86 3 2 4425 4508 377177817 377177732 3.660000e-26 130.0
37 TraesCS7A01G121400 chr3B 99.375 160 1 0 3700 3859 659458380 659458539 1.590000e-74 291.0
38 TraesCS7A01G121400 chr3B 87.692 65 8 0 3860 3924 802760064 802760128 4.840000e-10 76.8
39 TraesCS7A01G121400 chrUn 96.319 163 4 1 3698 3858 31210739 31210901 2.670000e-67 267.0
40 TraesCS7A01G121400 chrUn 88.614 202 22 1 2458 2659 391856955 391857155 1.250000e-60 244.0
41 TraesCS7A01G121400 chrUn 93.333 90 5 1 1877 1965 101630888 101630799 1.020000e-26 132.0
42 TraesCS7A01G121400 chr2A 95.238 168 6 2 3697 3862 574968932 574969099 9.620000e-67 265.0
43 TraesCS7A01G121400 chr2A 98.701 77 1 0 4432 4508 718943768 718943692 2.190000e-28 137.0
44 TraesCS7A01G121400 chr2A 92.473 93 5 2 1877 1967 350738222 350738130 1.020000e-26 132.0
45 TraesCS7A01G121400 chr6A 95.210 167 5 2 3700 3863 23859551 23859717 1.240000e-65 261.0
46 TraesCS7A01G121400 chr1A 95.210 167 4 3 3695 3858 254349080 254348915 1.240000e-65 261.0
47 TraesCS7A01G121400 chr1A 95.349 86 2 2 4425 4508 477696950 477696865 7.870000e-28 135.0
48 TraesCS7A01G121400 chr4A 93.605 172 8 2 3693 3861 729702038 729701867 2.080000e-63 254.0
49 TraesCS7A01G121400 chr5B 92.135 178 10 3 3686 3861 247548590 247548765 9.680000e-62 248.0
50 TraesCS7A01G121400 chr5B 94.505 91 3 2 1881 1969 440023747 440023837 6.080000e-29 139.0
51 TraesCS7A01G121400 chr5B 95.349 86 3 1 1881 1965 62940323 62940408 7.870000e-28 135.0
52 TraesCS7A01G121400 chr6B 93.865 163 10 0 3699 3861 365862822 365862660 3.480000e-61 246.0
53 TraesCS7A01G121400 chr6B 92.899 169 10 1 3699 3865 191654055 191653887 1.250000e-60 244.0
54 TraesCS7A01G121400 chr6B 95.455 88 3 1 1880 1966 472612146 472612059 6.080000e-29 139.0
55 TraesCS7A01G121400 chr3D 88.889 198 21 1 2462 2659 308276774 308276970 4.510000e-60 243.0
56 TraesCS7A01G121400 chr2D 88.889 198 21 1 2462 2659 527683287 527683483 4.510000e-60 243.0
57 TraesCS7A01G121400 chr2D 93.407 91 4 2 1876 1965 525715520 525715431 2.830000e-27 134.0
58 TraesCS7A01G121400 chr4B 100.000 74 0 0 4435 4508 596374772 596374845 2.190000e-28 137.0
59 TraesCS7A01G121400 chr4B 94.253 87 4 1 1879 1964 673204472 673204558 1.020000e-26 132.0
60 TraesCS7A01G121400 chr1B 92.553 94 2 4 4415 4508 39224211 39224123 3.660000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G121400 chr7A 78420176 78424683 4507 True 8325.000000 8325 100.000000 1 4508 1 chr7A.!!$R4 4507
1 TraesCS7A01G121400 chr7B 17611416 17615777 4361 True 850.833333 2025 89.511833 34 4508 6 chr7B.!!$R2 4474
2 TraesCS7A01G121400 chr7D 74395282 74405148 9866 True 552.900000 1893 90.797500 2 4388 10 chr7D.!!$R3 4386

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
223 240 0.111639 TTGAGCCTGTTGGTTACCCC 59.888 55.000 0.00 0.00 35.27 4.95 F
325 342 0.240945 GGTTTCTCGGTGGCACATTG 59.759 55.000 20.82 8.68 44.52 2.82 F
438 455 0.249322 ACGGGCATAAATCCTCGTCG 60.249 55.000 0.00 0.00 0.00 5.12 F
745 766 0.318529 CGAGGATGGAGAGTCATGCG 60.319 60.000 0.00 0.00 39.88 4.73 F
960 1041 0.320247 AGCACAGCACAGTAGCAGTC 60.320 55.000 0.00 0.00 36.85 3.51 F
970 1051 1.374252 GTAGCAGTCACCACCACGG 60.374 63.158 0.00 0.00 42.50 4.94 F
1506 1630 1.455217 GCCCTGGTAGCTCCTACGA 60.455 63.158 0.00 0.00 37.79 3.43 F
1975 2108 1.580658 AGGGGAGTACATCTCATGGGA 59.419 52.381 0.00 0.00 44.40 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1845 1974 0.109412 AGCGACCGTGTTACAGTAGC 60.109 55.000 2.60 2.6 33.00 3.58 R
1854 1983 1.132643 GAATCTCAGTAGCGACCGTGT 59.867 52.381 0.00 0.0 0.00 4.49 R
2433 2577 0.395724 CCCTGCCCAAGTGATTACCC 60.396 60.000 0.00 0.0 0.00 3.69 R
2542 2883 1.534729 AATTCGTGGGCAGAGTTTCC 58.465 50.000 0.00 0.0 0.00 3.13 R
2636 3070 4.349048 TCACTGATTGATTAGAGGGGATGG 59.651 45.833 0.00 0.0 0.00 3.51 R
2937 3372 6.751157 AGAAAGAAAATTGTGTCATGATGCA 58.249 32.000 0.00 0.0 0.00 3.96 R
3158 3593 2.649531 AGGATCAACGGTTTGGTCAA 57.350 45.000 1.95 0.0 43.77 3.18 R
3842 4278 1.921748 AGTACTACTCCCTCCGTTCCT 59.078 52.381 0.00 0.0 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 7.273381 GGTAGTTCACATTGATTTATTGTGTGC 59.727 37.037 0.00 0.00 40.09 4.57
115 119 6.678568 ACCCATGTGGAATCAAACAATTTA 57.321 33.333 0.00 0.00 37.39 1.40
117 121 7.330262 ACCCATGTGGAATCAAACAATTTATC 58.670 34.615 0.00 0.00 37.39 1.75
118 122 6.476380 CCCATGTGGAATCAAACAATTTATCG 59.524 38.462 0.00 0.00 37.39 2.92
123 127 8.447833 TGTGGAATCAAACAATTTATCGTAGTC 58.552 33.333 0.00 0.00 0.00 2.59
124 128 8.665685 GTGGAATCAAACAATTTATCGTAGTCT 58.334 33.333 0.00 0.00 0.00 3.24
125 129 9.878667 TGGAATCAAACAATTTATCGTAGTCTA 57.121 29.630 0.00 0.00 0.00 2.59
136 140 9.747898 AATTTATCGTAGTCTATCTCTCCTCAT 57.252 33.333 0.00 0.00 0.00 2.90
171 175 0.543277 TGAGAGGCAATCAAGGCGAT 59.457 50.000 0.00 0.00 39.37 4.58
188 192 0.931005 GATTCGTCATTCCTCGCCAC 59.069 55.000 0.00 0.00 0.00 5.01
221 238 1.607148 GTGTTGAGCCTGTTGGTTACC 59.393 52.381 0.00 0.00 35.27 2.85
222 239 1.244816 GTTGAGCCTGTTGGTTACCC 58.755 55.000 0.00 0.00 35.27 3.69
223 240 0.111639 TTGAGCCTGTTGGTTACCCC 59.888 55.000 0.00 0.00 35.27 4.95
224 241 0.770557 TGAGCCTGTTGGTTACCCCT 60.771 55.000 0.00 0.00 35.27 4.79
225 242 0.404426 GAGCCTGTTGGTTACCCCTT 59.596 55.000 0.00 0.00 35.27 3.95
226 243 0.857675 AGCCTGTTGGTTACCCCTTT 59.142 50.000 0.00 0.00 35.27 3.11
227 244 1.203013 AGCCTGTTGGTTACCCCTTTC 60.203 52.381 0.00 0.00 35.27 2.62
232 249 2.719705 TGTTGGTTACCCCTTTCTCCAT 59.280 45.455 0.00 0.00 0.00 3.41
240 257 0.464554 CCCTTTCTCCATCGGCTTCC 60.465 60.000 0.00 0.00 0.00 3.46
243 260 1.204786 TTTCTCCATCGGCTTCCCCA 61.205 55.000 0.00 0.00 0.00 4.96
278 295 0.958876 GGCAACCCTAGTGTTTCGGG 60.959 60.000 0.00 0.00 43.79 5.14
287 304 1.808390 GTGTTTCGGGGTCGATCCG 60.808 63.158 19.78 19.78 45.51 4.18
301 318 4.516698 GGTCGATCCGTACATAGTTAAGGA 59.483 45.833 0.00 0.00 0.00 3.36
320 337 0.988832 ATTAGGGTTTCTCGGTGGCA 59.011 50.000 0.00 0.00 0.00 4.92
324 341 0.893727 GGGTTTCTCGGTGGCACATT 60.894 55.000 20.82 0.00 44.52 2.71
325 342 0.240945 GGTTTCTCGGTGGCACATTG 59.759 55.000 20.82 8.68 44.52 2.82
409 426 2.240612 GATGTCGTCTTTGGCGGCAC 62.241 60.000 12.92 0.00 46.75 5.01
438 455 0.249322 ACGGGCATAAATCCTCGTCG 60.249 55.000 0.00 0.00 0.00 5.12
440 457 1.499049 GGGCATAAATCCTCGTCGAC 58.501 55.000 5.18 5.18 0.00 4.20
442 459 2.395654 GGCATAAATCCTCGTCGACTC 58.604 52.381 14.70 0.00 0.00 3.36
446 463 1.997669 AAATCCTCGTCGACTCTTGC 58.002 50.000 14.70 0.00 0.00 4.01
448 465 0.965866 ATCCTCGTCGACTCTTGCCA 60.966 55.000 14.70 0.00 0.00 4.92
460 478 0.843309 TCTTGCCACCTTTCAGGACA 59.157 50.000 0.00 0.00 37.67 4.02
470 488 2.289444 CCTTTCAGGACAACGAGGCTAA 60.289 50.000 0.00 0.00 37.67 3.09
485 503 2.498885 AGGCTAAGGTTTACAGGGTACG 59.501 50.000 0.00 0.00 0.00 3.67
509 527 4.059459 CGACGCGCTCACAACCAC 62.059 66.667 5.73 0.00 0.00 4.16
510 528 2.661866 GACGCGCTCACAACCACT 60.662 61.111 5.73 0.00 0.00 4.00
511 529 2.658707 GACGCGCTCACAACCACTC 61.659 63.158 5.73 0.00 0.00 3.51
512 530 3.414700 CGCGCTCACAACCACTCC 61.415 66.667 5.56 0.00 0.00 3.85
513 531 3.050275 GCGCTCACAACCACTCCC 61.050 66.667 0.00 0.00 0.00 4.30
514 532 2.358737 CGCTCACAACCACTCCCC 60.359 66.667 0.00 0.00 0.00 4.81
515 533 2.034221 GCTCACAACCACTCCCCC 59.966 66.667 0.00 0.00 0.00 5.40
530 548 3.743017 CCCCTCCCACCCCATGTG 61.743 72.222 0.00 0.00 45.01 3.21
543 561 0.827089 CCATGTGGTTTGGTGCTCCA 60.827 55.000 2.64 2.64 42.66 3.86
545 563 0.478072 ATGTGGTTTGGTGCTCCAGA 59.522 50.000 7.68 0.03 45.22 3.86
571 590 0.527169 TTTGTCACGTCGGTGCGTTA 60.527 50.000 0.00 0.00 43.83 3.18
594 613 3.371097 ATGCCGGTGTGACGCCTAG 62.371 63.158 13.93 5.68 0.00 3.02
595 614 3.755628 GCCGGTGTGACGCCTAGA 61.756 66.667 13.93 0.00 0.00 2.43
604 623 4.329256 GGTGTGACGCCTAGAAGAAATAAC 59.671 45.833 8.15 0.00 0.00 1.89
609 628 3.446516 ACGCCTAGAAGAAATAACGAGGT 59.553 43.478 0.00 0.00 0.00 3.85
615 634 7.523380 GCCTAGAAGAAATAACGAGGTATGCTA 60.523 40.741 0.00 0.00 0.00 3.49
617 636 9.915629 CTAGAAGAAATAACGAGGTATGCTATT 57.084 33.333 0.00 0.00 0.00 1.73
633 652 8.470002 GGTATGCTATTGGATTTTCAACTCTTT 58.530 33.333 0.00 0.00 0.00 2.52
635 654 7.523293 TGCTATTGGATTTTCAACTCTTTCA 57.477 32.000 0.00 0.00 0.00 2.69
636 655 7.950512 TGCTATTGGATTTTCAACTCTTTCAA 58.049 30.769 0.00 0.00 0.00 2.69
667 687 9.668497 GATGACTTATTCTTAAAGGTGTTAGGT 57.332 33.333 0.00 0.00 0.00 3.08
671 691 7.606839 ACTTATTCTTAAAGGTGTTAGGTCAGC 59.393 37.037 0.00 0.00 36.27 4.26
675 695 2.922740 AAGGTGTTAGGTCAGCGAAA 57.077 45.000 0.00 0.00 40.23 3.46
676 696 2.165319 AGGTGTTAGGTCAGCGAAAC 57.835 50.000 0.00 0.00 40.23 2.78
678 698 2.895404 AGGTGTTAGGTCAGCGAAACTA 59.105 45.455 0.00 0.00 40.23 2.24
686 707 1.666189 GTCAGCGAAACTATGGCCTTC 59.334 52.381 3.32 0.00 32.32 3.46
693 714 4.693283 CGAAACTATGGCCTTCATGACTA 58.307 43.478 3.32 0.00 37.30 2.59
695 716 5.675538 GAAACTATGGCCTTCATGACTACT 58.324 41.667 3.32 0.00 37.30 2.57
699 720 6.136857 ACTATGGCCTTCATGACTACTCTTA 58.863 40.000 3.32 0.00 37.30 2.10
717 738 5.635280 ACTCTTATGTGATCAACAACGACAG 59.365 40.000 0.00 0.00 43.61 3.51
725 746 3.188159 TCAACAACGACAGGCTTACTT 57.812 42.857 0.00 0.00 0.00 2.24
729 750 1.986378 CAACGACAGGCTTACTTCGAG 59.014 52.381 10.53 1.42 35.31 4.04
737 758 2.032620 GGCTTACTTCGAGGATGGAGA 58.967 52.381 0.00 0.00 0.00 3.71
745 766 0.318529 CGAGGATGGAGAGTCATGCG 60.319 60.000 0.00 0.00 39.88 4.73
749 770 1.539929 GGATGGAGAGTCATGCGAAGG 60.540 57.143 0.00 0.00 0.00 3.46
770 791 2.203209 GCCATCGCCCCTACCAAG 60.203 66.667 0.00 0.00 0.00 3.61
785 806 3.864789 ACCAAGGAGAAGACAATGTGT 57.135 42.857 0.00 0.00 0.00 3.72
787 808 8.963455 CCTACCAAGGAGAAGACAATGTGTCC 62.963 50.000 4.79 0.00 46.17 4.02
827 848 1.533625 TTGCCGGAAAGACTCCAATG 58.466 50.000 5.05 0.00 45.74 2.82
835 856 5.163652 CCGGAAAGACTCCAATGTAATTTCC 60.164 44.000 0.00 0.00 45.74 3.13
844 865 9.285770 GACTCCAATGTAATTTCCGTATTTTTC 57.714 33.333 0.00 0.00 31.22 2.29
845 866 8.798402 ACTCCAATGTAATTTCCGTATTTTTCA 58.202 29.630 0.00 0.00 31.22 2.69
846 867 9.632807 CTCCAATGTAATTTCCGTATTTTTCAA 57.367 29.630 0.00 0.00 31.22 2.69
867 948 5.124776 TCAAGTTGTTTGTACTCCTGGTTTG 59.875 40.000 2.11 0.00 38.01 2.93
876 957 3.806949 ACTCCTGGTTTGGCAGAAATA 57.193 42.857 0.00 0.00 0.00 1.40
928 1009 0.523546 CTCCATTCGTCAGTCGGTCG 60.524 60.000 0.00 0.00 40.32 4.79
929 1010 1.516386 CCATTCGTCAGTCGGTCGG 60.516 63.158 0.00 0.00 40.32 4.79
930 1011 1.211969 CATTCGTCAGTCGGTCGGT 59.788 57.895 0.00 0.00 40.32 4.69
932 1013 2.249557 ATTCGTCAGTCGGTCGGTCG 62.250 60.000 0.00 0.00 40.32 4.79
933 1014 4.456253 CGTCAGTCGGTCGGTCGG 62.456 72.222 0.00 0.00 35.71 4.79
934 1015 3.360340 GTCAGTCGGTCGGTCGGT 61.360 66.667 0.00 0.00 0.00 4.69
935 1016 3.052082 TCAGTCGGTCGGTCGGTC 61.052 66.667 0.00 0.00 0.00 4.79
936 1017 3.054503 CAGTCGGTCGGTCGGTCT 61.055 66.667 0.00 0.00 0.00 3.85
937 1018 2.282040 AGTCGGTCGGTCGGTCTT 60.282 61.111 0.00 0.00 0.00 3.01
938 1019 1.003355 AGTCGGTCGGTCGGTCTTA 60.003 57.895 0.00 0.00 0.00 2.10
939 1020 1.135523 GTCGGTCGGTCGGTCTTAC 59.864 63.158 0.00 0.00 0.00 2.34
940 1021 2.040544 TCGGTCGGTCGGTCTTACC 61.041 63.158 0.00 0.00 34.05 2.85
941 1022 2.334946 CGGTCGGTCGGTCTTACCA 61.335 63.158 0.00 0.00 38.47 3.25
942 1023 1.509923 GGTCGGTCGGTCTTACCAG 59.490 63.158 0.00 0.00 38.47 4.00
943 1024 1.153881 GTCGGTCGGTCTTACCAGC 60.154 63.158 0.00 0.00 38.47 4.85
944 1025 1.604308 TCGGTCGGTCTTACCAGCA 60.604 57.895 0.00 0.00 38.47 4.41
957 1038 1.301953 CCAGCACAGCACAGTAGCA 60.302 57.895 0.00 0.00 36.85 3.49
960 1041 0.320247 AGCACAGCACAGTAGCAGTC 60.320 55.000 0.00 0.00 36.85 3.51
970 1051 1.374252 GTAGCAGTCACCACCACGG 60.374 63.158 0.00 0.00 42.50 4.94
982 1063 4.003788 CCACGGCACCGGAGAGTT 62.004 66.667 9.46 0.00 44.69 3.01
984 1065 4.681978 ACGGCACCGGAGAGTTGC 62.682 66.667 9.46 7.02 44.69 4.17
987 1068 4.329545 GCACCGGAGAGTTGCCCA 62.330 66.667 9.46 0.00 0.00 5.36
988 1069 2.429930 CACCGGAGAGTTGCCCAA 59.570 61.111 9.46 0.00 0.00 4.12
994 1080 2.032681 AGAGTTGCCCAACCGCTC 59.967 61.111 7.48 0.04 42.06 5.03
996 1082 3.842925 GAGTTGCCCAACCGCTCCA 62.843 63.158 7.48 0.00 42.06 3.86
1152 1244 2.113433 CGTCGTGGACCTCTCGGAT 61.113 63.158 0.00 0.00 0.00 4.18
1458 1550 3.353836 CGGTGGCCCAACTTCGTG 61.354 66.667 0.00 0.00 0.00 4.35
1478 1570 3.958798 GTGCCAGGATACAGGTAAGAGTA 59.041 47.826 0.00 0.00 46.97 2.59
1506 1630 1.455217 GCCCTGGTAGCTCCTACGA 60.455 63.158 0.00 0.00 37.79 3.43
1568 1695 4.322650 GGACTGCTTTGGCCATTTTATGAA 60.323 41.667 6.09 0.00 37.74 2.57
1656 1783 4.759693 TGACAAAACACACTGTCTCTGTTT 59.240 37.500 4.07 3.20 42.06 2.83
1696 1823 3.682858 TCAGGAAAAACTTTATCTCGCCG 59.317 43.478 0.00 0.00 0.00 6.46
1697 1824 3.682858 CAGGAAAAACTTTATCTCGCCGA 59.317 43.478 0.00 0.00 0.00 5.54
1698 1825 3.683340 AGGAAAAACTTTATCTCGCCGAC 59.317 43.478 0.00 0.00 0.00 4.79
1699 1826 3.683340 GGAAAAACTTTATCTCGCCGACT 59.317 43.478 0.00 0.00 0.00 4.18
1700 1827 4.201695 GGAAAAACTTTATCTCGCCGACTC 60.202 45.833 0.00 0.00 0.00 3.36
1704 1831 3.806380 ACTTTATCTCGCCGACTCTCTA 58.194 45.455 0.00 0.00 0.00 2.43
1714 1841 2.656002 CCGACTCTCTATTGGACCAGA 58.344 52.381 0.00 0.00 0.00 3.86
1726 1853 3.289407 TGGACCAGAATTTCACACACA 57.711 42.857 0.00 0.00 0.00 3.72
1845 1974 6.748333 TTTGAGTAGAAATTCAGCCAGATG 57.252 37.500 0.00 0.00 0.00 2.90
1859 1988 2.540515 CCAGATGCTACTGTAACACGG 58.459 52.381 9.15 0.00 36.30 4.94
1883 2016 7.371936 GGTCGCTACTGAGATTCATTAATACT 58.628 38.462 0.00 0.00 0.00 2.12
1884 2017 7.539366 GGTCGCTACTGAGATTCATTAATACTC 59.461 40.741 0.00 0.00 0.00 2.59
1885 2018 7.539366 GTCGCTACTGAGATTCATTAATACTCC 59.461 40.741 0.00 0.00 0.00 3.85
1886 2019 6.809196 CGCTACTGAGATTCATTAATACTCCC 59.191 42.308 0.00 0.00 0.00 4.30
1887 2020 7.309499 CGCTACTGAGATTCATTAATACTCCCT 60.309 40.741 0.00 0.00 0.00 4.20
1888 2021 8.032451 GCTACTGAGATTCATTAATACTCCCTC 58.968 40.741 0.00 0.00 0.00 4.30
1889 2022 7.309770 ACTGAGATTCATTAATACTCCCTCC 57.690 40.000 0.00 0.00 0.00 4.30
1890 2023 6.015010 ACTGAGATTCATTAATACTCCCTCCG 60.015 42.308 0.00 0.00 0.00 4.63
1891 2024 5.839063 TGAGATTCATTAATACTCCCTCCGT 59.161 40.000 0.00 0.00 0.00 4.69
1892 2025 7.008332 TGAGATTCATTAATACTCCCTCCGTA 58.992 38.462 0.00 0.00 0.00 4.02
1893 2026 7.507956 TGAGATTCATTAATACTCCCTCCGTAA 59.492 37.037 0.00 0.00 0.00 3.18
1894 2027 8.258850 AGATTCATTAATACTCCCTCCGTAAA 57.741 34.615 0.00 0.00 0.00 2.01
1895 2028 8.368668 AGATTCATTAATACTCCCTCCGTAAAG 58.631 37.037 0.00 0.00 0.00 1.85
1896 2029 7.664552 TTCATTAATACTCCCTCCGTAAAGA 57.335 36.000 0.00 0.00 0.00 2.52
1897 2030 7.664552 TCATTAATACTCCCTCCGTAAAGAA 57.335 36.000 0.00 0.00 0.00 2.52
1898 2031 8.081517 TCATTAATACTCCCTCCGTAAAGAAA 57.918 34.615 0.00 0.00 0.00 2.52
1899 2032 8.711170 TCATTAATACTCCCTCCGTAAAGAAAT 58.289 33.333 0.00 0.00 0.00 2.17
1900 2033 9.991906 CATTAATACTCCCTCCGTAAAGAAATA 57.008 33.333 0.00 0.00 0.00 1.40
1901 2034 9.993454 ATTAATACTCCCTCCGTAAAGAAATAC 57.007 33.333 0.00 0.00 0.00 1.89
1902 2035 7.427989 AATACTCCCTCCGTAAAGAAATACA 57.572 36.000 0.00 0.00 0.00 2.29
1903 2036 5.750352 ACTCCCTCCGTAAAGAAATACAA 57.250 39.130 0.00 0.00 0.00 2.41
1904 2037 5.731591 ACTCCCTCCGTAAAGAAATACAAG 58.268 41.667 0.00 0.00 0.00 3.16
1905 2038 5.482878 ACTCCCTCCGTAAAGAAATACAAGA 59.517 40.000 0.00 0.00 0.00 3.02
1906 2039 5.974108 TCCCTCCGTAAAGAAATACAAGAG 58.026 41.667 0.00 0.00 0.00 2.85
1907 2040 4.571176 CCCTCCGTAAAGAAATACAAGAGC 59.429 45.833 0.00 0.00 30.25 4.09
1908 2041 5.175859 CCTCCGTAAAGAAATACAAGAGCA 58.824 41.667 0.00 0.00 30.25 4.26
1909 2042 5.817816 CCTCCGTAAAGAAATACAAGAGCAT 59.182 40.000 0.00 0.00 30.25 3.79
1910 2043 6.316390 CCTCCGTAAAGAAATACAAGAGCATT 59.684 38.462 0.00 0.00 30.25 3.56
1911 2044 7.148239 CCTCCGTAAAGAAATACAAGAGCATTT 60.148 37.037 0.00 0.00 30.25 2.32
1912 2045 8.780846 TCCGTAAAGAAATACAAGAGCATTTA 57.219 30.769 0.00 0.00 0.00 1.40
1913 2046 8.879759 TCCGTAAAGAAATACAAGAGCATTTAG 58.120 33.333 0.00 0.00 0.00 1.85
1914 2047 8.879759 CCGTAAAGAAATACAAGAGCATTTAGA 58.120 33.333 0.00 0.00 0.00 2.10
1919 2052 9.678260 AAGAAATACAAGAGCATTTAGATCACT 57.322 29.630 0.00 0.00 34.30 3.41
1923 2056 9.757227 AATACAAGAGCATTTAGATCACTACTC 57.243 33.333 0.00 0.00 34.30 2.59
1924 2057 7.416964 ACAAGAGCATTTAGATCACTACTCT 57.583 36.000 0.00 0.00 34.30 3.24
1925 2058 8.526667 ACAAGAGCATTTAGATCACTACTCTA 57.473 34.615 0.00 0.00 34.30 2.43
1926 2059 8.629158 ACAAGAGCATTTAGATCACTACTCTAG 58.371 37.037 0.00 0.00 34.30 2.43
1927 2060 8.629158 CAAGAGCATTTAGATCACTACTCTAGT 58.371 37.037 0.00 0.00 40.28 2.57
1959 2092 9.462606 AAACACTCTTATATTTCTTTACAGGGG 57.537 33.333 0.00 0.00 0.00 4.79
1960 2093 8.388656 ACACTCTTATATTTCTTTACAGGGGA 57.611 34.615 0.00 0.00 0.00 4.81
1961 2094 8.487028 ACACTCTTATATTTCTTTACAGGGGAG 58.513 37.037 0.00 0.00 0.00 4.30
1962 2095 8.487028 CACTCTTATATTTCTTTACAGGGGAGT 58.513 37.037 0.00 0.00 0.00 3.85
1963 2096 9.725206 ACTCTTATATTTCTTTACAGGGGAGTA 57.275 33.333 0.00 0.00 0.00 2.59
1964 2097 9.984190 CTCTTATATTTCTTTACAGGGGAGTAC 57.016 37.037 0.00 0.00 0.00 2.73
1973 2106 2.402564 ACAGGGGAGTACATCTCATGG 58.597 52.381 10.27 0.00 44.40 3.66
1975 2108 1.580658 AGGGGAGTACATCTCATGGGA 59.419 52.381 0.00 0.00 44.40 4.37
2002 2135 7.709947 ACCTTGTATCATTATTGCTCATGTTG 58.290 34.615 0.00 0.00 0.00 3.33
2010 2143 7.774134 TCATTATTGCTCATGTTGCTACAATT 58.226 30.769 4.79 0.00 37.91 2.32
2150 2284 5.063691 GTGCATCATCTCTGAAAGTCTGAAG 59.936 44.000 0.00 0.00 34.37 3.02
2433 2577 6.908825 TGCTTTATTACTTAACAGCCTGTTG 58.091 36.000 20.12 6.85 41.30 3.33
2488 2646 2.091333 GGAGGGATTAGGCAATGGGAAA 60.091 50.000 0.00 0.00 0.00 3.13
2542 2883 7.607991 GGTATATGATTGGAATTAGTGTGGGAG 59.392 40.741 0.00 0.00 0.00 4.30
2636 3070 1.990327 TCCCCTTCCCACTTAAACTCC 59.010 52.381 0.00 0.00 0.00 3.85
2640 3074 3.621558 CCTTCCCACTTAAACTCCCATC 58.378 50.000 0.00 0.00 0.00 3.51
2738 3172 7.974675 TGGACGACTTCAATTCAATATTTCTC 58.025 34.615 0.00 0.00 0.00 2.87
2937 3372 4.336433 GGCAGCACATAATGTACTGATTGT 59.664 41.667 8.36 0.00 42.83 2.71
3113 3548 9.658475 TTTTGTTATGTTTTCACTAGATTGACG 57.342 29.630 0.00 0.00 0.00 4.35
3175 3610 3.885358 GTCTTTGACCAAACCGTTGATC 58.115 45.455 0.00 0.00 36.83 2.92
3526 3961 3.737559 AGACAGGGCCATTGAAATGTA 57.262 42.857 6.18 0.00 34.60 2.29
3535 3970 5.059833 GGCCATTGAAATGTACCACAAAAA 58.940 37.500 0.00 0.00 34.60 1.94
3595 4030 6.648879 TCAATAAAGAGGTGGAAAACAAGG 57.351 37.500 0.00 0.00 0.00 3.61
3601 4036 4.204799 AGAGGTGGAAAACAAGGTTGTAC 58.795 43.478 0.00 0.00 41.31 2.90
3638 4074 7.422399 TGTTTGTGTGAAATTTTACTCTAGCC 58.578 34.615 13.55 4.05 0.00 3.93
3640 4076 7.435068 TTGTGTGAAATTTTACTCTAGCCTC 57.565 36.000 13.55 0.00 0.00 4.70
3698 4134 1.798283 TTTGGTCGACCCGTGTTATG 58.202 50.000 31.19 0.00 35.15 1.90
3699 4135 0.680618 TTGGTCGACCCGTGTTATGT 59.319 50.000 31.19 0.00 35.15 2.29
3700 4136 1.543607 TGGTCGACCCGTGTTATGTA 58.456 50.000 31.19 5.95 35.15 2.29
3701 4137 1.202114 TGGTCGACCCGTGTTATGTAC 59.798 52.381 31.19 2.33 35.15 2.90
3702 4138 1.474077 GGTCGACCCGTGTTATGTACT 59.526 52.381 24.75 0.00 0.00 2.73
3703 4139 2.478539 GGTCGACCCGTGTTATGTACTC 60.479 54.545 24.75 0.00 0.00 2.59
3704 4140 1.745087 TCGACCCGTGTTATGTACTCC 59.255 52.381 0.00 0.00 0.00 3.85
3705 4141 1.202336 CGACCCGTGTTATGTACTCCC 60.202 57.143 0.00 0.00 0.00 4.30
3706 4142 2.105766 GACCCGTGTTATGTACTCCCT 58.894 52.381 0.00 0.00 0.00 4.20
3707 4143 2.100418 GACCCGTGTTATGTACTCCCTC 59.900 54.545 0.00 0.00 0.00 4.30
3708 4144 1.411612 CCCGTGTTATGTACTCCCTCC 59.588 57.143 0.00 0.00 0.00 4.30
3709 4145 1.066605 CCGTGTTATGTACTCCCTCCG 59.933 57.143 0.00 0.00 0.00 4.63
3710 4146 1.747355 CGTGTTATGTACTCCCTCCGT 59.253 52.381 0.00 0.00 0.00 4.69
3711 4147 2.165030 CGTGTTATGTACTCCCTCCGTT 59.835 50.000 0.00 0.00 0.00 4.44
3712 4148 3.733077 CGTGTTATGTACTCCCTCCGTTC 60.733 52.174 0.00 0.00 0.00 3.95
3713 4149 2.762327 TGTTATGTACTCCCTCCGTTCC 59.238 50.000 0.00 0.00 0.00 3.62
3714 4150 3.029570 GTTATGTACTCCCTCCGTTCCT 58.970 50.000 0.00 0.00 0.00 3.36
3715 4151 4.210331 GTTATGTACTCCCTCCGTTCCTA 58.790 47.826 0.00 0.00 0.00 2.94
3716 4152 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
3717 4153 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
3718 4154 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
3719 4155 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
3720 4156 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
3721 4157 6.613699 TGTACTCCCTCCGTTCCTAAATATA 58.386 40.000 0.00 0.00 0.00 0.86
3722 4158 7.068702 TGTACTCCCTCCGTTCCTAAATATAA 58.931 38.462 0.00 0.00 0.00 0.98
3723 4159 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3724 4160 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
3725 4161 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
3726 4162 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
3727 4163 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
3728 4164 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
3729 4165 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
3730 4166 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
3748 4184 9.646427 AGTCTTTGTAGAGATTTCACTATGAAC 57.354 33.333 0.00 0.00 35.89 3.18
3749 4185 8.874816 GTCTTTGTAGAGATTTCACTATGAACC 58.125 37.037 0.00 0.00 35.89 3.62
3750 4186 8.593679 TCTTTGTAGAGATTTCACTATGAACCA 58.406 33.333 0.00 0.00 35.89 3.67
3751 4187 8.547967 TTTGTAGAGATTTCACTATGAACCAC 57.452 34.615 0.00 0.00 35.89 4.16
3752 4188 7.239763 TGTAGAGATTTCACTATGAACCACA 57.760 36.000 0.00 0.00 35.89 4.17
3753 4189 7.851228 TGTAGAGATTTCACTATGAACCACAT 58.149 34.615 0.00 0.00 35.89 3.21
3754 4190 8.977412 TGTAGAGATTTCACTATGAACCACATA 58.023 33.333 0.00 0.00 35.89 2.29
3755 4191 9.250624 GTAGAGATTTCACTATGAACCACATAC 57.749 37.037 0.00 0.00 35.89 2.39
3756 4192 6.980978 AGAGATTTCACTATGAACCACATACG 59.019 38.462 0.00 0.00 35.89 3.06
3757 4193 6.049149 AGATTTCACTATGAACCACATACGG 58.951 40.000 0.00 0.00 35.89 4.02
3758 4194 5.408880 TTTCACTATGAACCACATACGGA 57.591 39.130 0.00 0.00 35.89 4.69
3759 4195 5.607939 TTCACTATGAACCACATACGGAT 57.392 39.130 0.00 0.00 40.07 4.18
3760 4196 4.944048 TCACTATGAACCACATACGGATG 58.056 43.478 5.94 5.94 40.07 3.51
3761 4197 5.105106 TTCACTATGAACCACATACGGATGT 60.105 40.000 7.68 7.68 37.89 3.06
3762 4198 5.595133 TCACTATGAACCACATACGGATGTA 59.405 40.000 14.23 0.00 44.82 2.29
3763 4199 6.266786 TCACTATGAACCACATACGGATGTAT 59.733 38.462 14.23 5.54 44.82 2.29
3764 4200 7.449086 TCACTATGAACCACATACGGATGTATA 59.551 37.037 14.23 6.48 44.82 1.47
3765 4201 8.251026 CACTATGAACCACATACGGATGTATAT 58.749 37.037 14.23 1.68 44.82 0.86
3766 4202 9.470399 ACTATGAACCACATACGGATGTATATA 57.530 33.333 14.23 7.10 44.82 0.86
3767 4203 9.952188 CTATGAACCACATACGGATGTATATAG 57.048 37.037 14.23 12.28 44.82 1.31
3768 4204 8.589701 ATGAACCACATACGGATGTATATAGA 57.410 34.615 14.23 0.00 44.82 1.98
3769 4205 8.589701 TGAACCACATACGGATGTATATAGAT 57.410 34.615 14.23 0.00 44.82 1.98
3770 4206 8.466798 TGAACCACATACGGATGTATATAGATG 58.533 37.037 14.23 0.00 44.82 2.90
3771 4207 6.806751 ACCACATACGGATGTATATAGATGC 58.193 40.000 14.23 0.00 44.82 3.91
3772 4208 6.379988 ACCACATACGGATGTATATAGATGCA 59.620 38.462 14.23 0.00 44.82 3.96
3773 4209 7.069950 ACCACATACGGATGTATATAGATGCAT 59.930 37.037 14.23 0.00 44.82 3.96
3774 4210 7.928167 CCACATACGGATGTATATAGATGCATT 59.072 37.037 14.23 1.23 44.82 3.56
3775 4211 9.317936 CACATACGGATGTATATAGATGCATTT 57.682 33.333 14.23 0.00 44.82 2.32
3776 4212 9.890629 ACATACGGATGTATATAGATGCATTTT 57.109 29.630 12.79 0.00 44.77 1.82
3780 4216 9.944376 ACGGATGTATATAGATGCATTTTAAGT 57.056 29.630 11.19 0.00 38.38 2.24
3803 4239 8.136057 AGTATAGATTCACTCATTTTGCTTCG 57.864 34.615 0.00 0.00 0.00 3.79
3804 4240 6.992063 ATAGATTCACTCATTTTGCTTCGT 57.008 33.333 0.00 0.00 0.00 3.85
3805 4241 9.031360 GTATAGATTCACTCATTTTGCTTCGTA 57.969 33.333 0.00 0.00 0.00 3.43
3806 4242 6.992063 AGATTCACTCATTTTGCTTCGTAT 57.008 33.333 0.00 0.00 0.00 3.06
3807 4243 6.779117 AGATTCACTCATTTTGCTTCGTATG 58.221 36.000 0.00 0.00 0.00 2.39
3808 4244 5.940192 TTCACTCATTTTGCTTCGTATGT 57.060 34.783 0.00 0.00 0.00 2.29
3809 4245 5.281693 TCACTCATTTTGCTTCGTATGTG 57.718 39.130 0.00 0.00 0.00 3.21
3810 4246 4.154015 TCACTCATTTTGCTTCGTATGTGG 59.846 41.667 0.00 0.00 0.00 4.17
3811 4247 4.072131 ACTCATTTTGCTTCGTATGTGGT 58.928 39.130 0.00 0.00 0.00 4.16
3812 4248 4.154195 ACTCATTTTGCTTCGTATGTGGTC 59.846 41.667 0.00 0.00 0.00 4.02
3813 4249 3.438781 TCATTTTGCTTCGTATGTGGTCC 59.561 43.478 0.00 0.00 0.00 4.46
3814 4250 2.552599 TTTGCTTCGTATGTGGTCCA 57.447 45.000 0.00 0.00 0.00 4.02
3815 4251 2.779755 TTGCTTCGTATGTGGTCCAT 57.220 45.000 0.00 0.00 37.58 3.41
3816 4252 3.897141 TTGCTTCGTATGTGGTCCATA 57.103 42.857 0.00 0.00 34.86 2.74
3817 4253 3.452755 TGCTTCGTATGTGGTCCATAG 57.547 47.619 0.00 0.00 36.71 2.23
3818 4254 3.028130 TGCTTCGTATGTGGTCCATAGA 58.972 45.455 0.00 0.00 36.71 1.98
3819 4255 3.449377 TGCTTCGTATGTGGTCCATAGAA 59.551 43.478 0.00 0.00 36.71 2.10
3820 4256 4.081365 TGCTTCGTATGTGGTCCATAGAAA 60.081 41.667 0.00 0.00 36.71 2.52
3821 4257 5.057149 GCTTCGTATGTGGTCCATAGAAAT 58.943 41.667 0.00 0.00 36.71 2.17
3822 4258 5.527582 GCTTCGTATGTGGTCCATAGAAATT 59.472 40.000 0.00 0.00 36.71 1.82
3823 4259 6.704493 GCTTCGTATGTGGTCCATAGAAATTA 59.296 38.462 0.00 0.00 36.71 1.40
3824 4260 7.307219 GCTTCGTATGTGGTCCATAGAAATTAC 60.307 40.741 0.00 0.00 36.71 1.89
3825 4261 7.356089 TCGTATGTGGTCCATAGAAATTACT 57.644 36.000 0.00 0.00 36.71 2.24
3826 4262 7.431249 TCGTATGTGGTCCATAGAAATTACTC 58.569 38.462 0.00 0.00 36.71 2.59
3827 4263 6.645415 CGTATGTGGTCCATAGAAATTACTCC 59.355 42.308 0.00 0.00 36.71 3.85
3828 4264 6.575244 ATGTGGTCCATAGAAATTACTCCA 57.425 37.500 0.00 0.00 29.82 3.86
3829 4265 6.381498 TGTGGTCCATAGAAATTACTCCAA 57.619 37.500 0.00 0.00 0.00 3.53
3830 4266 6.785076 TGTGGTCCATAGAAATTACTCCAAA 58.215 36.000 0.00 0.00 0.00 3.28
3831 4267 6.884295 TGTGGTCCATAGAAATTACTCCAAAG 59.116 38.462 0.00 0.00 0.00 2.77
3832 4268 7.110155 GTGGTCCATAGAAATTACTCCAAAGA 58.890 38.462 0.00 0.00 0.00 2.52
3833 4269 7.065923 GTGGTCCATAGAAATTACTCCAAAGAC 59.934 40.741 0.00 0.00 0.00 3.01
3834 4270 7.037586 TGGTCCATAGAAATTACTCCAAAGACT 60.038 37.037 0.00 0.00 0.00 3.24
3835 4271 7.829706 GGTCCATAGAAATTACTCCAAAGACTT 59.170 37.037 0.00 0.00 0.00 3.01
3836 4272 9.886132 GTCCATAGAAATTACTCCAAAGACTTA 57.114 33.333 0.00 0.00 0.00 2.24
3848 4284 8.943909 ACTCCAAAGACTTATATTTAGGAACG 57.056 34.615 0.00 0.00 0.00 3.95
3849 4285 7.985752 ACTCCAAAGACTTATATTTAGGAACGG 59.014 37.037 0.00 0.00 0.00 4.44
3850 4286 8.081517 TCCAAAGACTTATATTTAGGAACGGA 57.918 34.615 0.00 0.00 0.00 4.69
3851 4287 8.202137 TCCAAAGACTTATATTTAGGAACGGAG 58.798 37.037 0.00 0.00 0.00 4.63
3852 4288 7.441458 CCAAAGACTTATATTTAGGAACGGAGG 59.559 40.741 0.00 0.00 0.00 4.30
3853 4289 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
3854 4290 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
3877 4313 6.183360 GGAGTAGTACTCTCTCCATTCCAAAG 60.183 46.154 27.83 0.00 44.46 2.77
3886 4322 4.566004 TCTCCATTCCAAAGTAAGTGTCG 58.434 43.478 0.00 0.00 0.00 4.35
3889 4325 3.120199 CCATTCCAAAGTAAGTGTCGCTG 60.120 47.826 0.00 0.00 0.00 5.18
3907 4343 4.743151 TCGCTGACTTAGTACAAAGTTGTG 59.257 41.667 6.94 0.00 42.31 3.33
3919 4355 5.493133 ACAAAGTTGTGCTAAATCAACGA 57.507 34.783 0.00 0.00 45.56 3.85
3920 4356 6.072112 ACAAAGTTGTGCTAAATCAACGAT 57.928 33.333 0.00 0.00 45.56 3.73
3939 4797 9.483916 TCAACGATACTTATTTTTGAGACAGAA 57.516 29.630 0.00 0.00 0.00 3.02
3964 4822 6.787458 AGGATTATTGGACAACCCTTTCTTTT 59.213 34.615 0.00 0.00 35.38 2.27
3965 4823 7.292356 AGGATTATTGGACAACCCTTTCTTTTT 59.708 33.333 0.00 0.00 35.38 1.94
4001 4872 6.183360 GGACAACCCTTTCTTTGGTTAATTGA 60.183 38.462 0.00 0.00 42.88 2.57
4002 4873 7.189079 ACAACCCTTTCTTTGGTTAATTGAA 57.811 32.000 0.00 0.00 42.88 2.69
4004 4875 7.714813 ACAACCCTTTCTTTGGTTAATTGAATG 59.285 33.333 0.00 0.00 42.88 2.67
4005 4876 7.610580 ACCCTTTCTTTGGTTAATTGAATGA 57.389 32.000 0.00 0.00 0.00 2.57
4069 4940 1.373570 GTACAATCTGCCAGTGAGCC 58.626 55.000 0.00 0.00 0.00 4.70
4218 5100 3.552384 ACCGGCGTTCACTGGGAA 61.552 61.111 6.01 0.00 40.73 3.97
4244 5127 5.791336 AAAATCAGGGGTGAGAAGAAAAC 57.209 39.130 0.00 0.00 0.00 2.43
4249 5132 6.008696 TCAGGGGTGAGAAGAAAACTAAAA 57.991 37.500 0.00 0.00 0.00 1.52
4313 5203 2.285220 CACCCAAAGCGAGAATCATACG 59.715 50.000 0.00 0.00 33.17 3.06
4338 5228 1.543802 GACCAAACGCCCAATTGATGA 59.456 47.619 7.12 0.00 0.00 2.92
4393 5283 1.686355 AAAATCAGCCACAACCACGA 58.314 45.000 0.00 0.00 0.00 4.35
4398 5288 0.813610 CAGCCACAACCACGACTTGA 60.814 55.000 0.00 0.00 0.00 3.02
4400 5290 0.814010 GCCACAACCACGACTTGAGT 60.814 55.000 0.00 0.00 0.00 3.41
4405 5295 2.806244 ACAACCACGACTTGAGTAATGC 59.194 45.455 0.00 0.00 0.00 3.56
4413 5303 3.326747 GACTTGAGTAATGCGTTCAGGT 58.673 45.455 0.00 0.00 34.39 4.00
4417 5307 4.729227 TGAGTAATGCGTTCAGGTGATA 57.271 40.909 0.00 0.00 0.00 2.15
4419 5309 5.670485 TGAGTAATGCGTTCAGGTGATAAT 58.330 37.500 0.00 0.00 0.00 1.28
4421 5311 7.269316 TGAGTAATGCGTTCAGGTGATAATAA 58.731 34.615 0.00 0.00 0.00 1.40
4422 5312 7.931407 TGAGTAATGCGTTCAGGTGATAATAAT 59.069 33.333 0.00 0.00 0.00 1.28
4424 5314 9.772973 AGTAATGCGTTCAGGTGATAATAATAA 57.227 29.630 0.00 0.00 0.00 1.40
4425 5315 9.807386 GTAATGCGTTCAGGTGATAATAATAAC 57.193 33.333 0.00 0.00 0.00 1.89
4427 5317 7.477144 TGCGTTCAGGTGATAATAATAACAG 57.523 36.000 0.00 0.00 0.00 3.16
4429 5319 7.438160 TGCGTTCAGGTGATAATAATAACAGAG 59.562 37.037 0.00 0.00 0.00 3.35
4430 5320 7.652105 GCGTTCAGGTGATAATAATAACAGAGA 59.348 37.037 0.00 0.00 0.00 3.10
4431 5321 9.698309 CGTTCAGGTGATAATAATAACAGAGAT 57.302 33.333 0.00 0.00 0.00 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.693739 ACAATAAATCAATGTGAACTACCCATA 57.306 29.630 0.00 0.00 0.00 2.74
3 4 8.469200 CACAATAAATCAATGTGAACTACCCAT 58.531 33.333 0.00 0.00 45.61 4.00
4 5 7.450014 ACACAATAAATCAATGTGAACTACCCA 59.550 33.333 11.66 0.00 45.61 4.51
63 64 8.938906 CGAAAATGATTCCCTTCATGAAATTTT 58.061 29.630 18.07 18.07 36.48 1.82
67 68 6.588719 ACGAAAATGATTCCCTTCATGAAA 57.411 33.333 9.88 0.00 36.48 2.69
70 71 6.265577 GGTAACGAAAATGATTCCCTTCATG 58.734 40.000 0.00 0.00 36.48 3.07
115 119 6.620877 AGATGAGGAGAGATAGACTACGAT 57.379 41.667 0.00 0.00 0.00 3.73
117 121 6.148811 GGAAAGATGAGGAGAGATAGACTACG 59.851 46.154 0.00 0.00 0.00 3.51
118 122 6.433093 GGGAAAGATGAGGAGAGATAGACTAC 59.567 46.154 0.00 0.00 0.00 2.73
123 127 4.750941 AGGGGAAAGATGAGGAGAGATAG 58.249 47.826 0.00 0.00 0.00 2.08
124 128 4.841813 AGGGGAAAGATGAGGAGAGATA 57.158 45.455 0.00 0.00 0.00 1.98
125 129 3.723098 AGGGGAAAGATGAGGAGAGAT 57.277 47.619 0.00 0.00 0.00 2.75
136 140 3.009473 CCTCTCATGACAAAGGGGAAAGA 59.991 47.826 1.60 0.00 34.86 2.52
171 175 1.079405 GGTGGCGAGGAATGACGAA 60.079 57.895 0.00 0.00 0.00 3.85
188 192 2.216046 CTCAACACCGATGATGATGGG 58.784 52.381 0.00 0.00 37.05 4.00
221 238 0.464554 GGAAGCCGATGGAGAAAGGG 60.465 60.000 0.00 0.00 0.00 3.95
222 239 0.464554 GGGAAGCCGATGGAGAAAGG 60.465 60.000 0.00 0.00 0.00 3.11
223 240 0.464554 GGGGAAGCCGATGGAGAAAG 60.465 60.000 0.00 0.00 0.00 2.62
224 241 1.204786 TGGGGAAGCCGATGGAGAAA 61.205 55.000 0.00 0.00 0.00 2.52
225 242 1.615124 TGGGGAAGCCGATGGAGAA 60.615 57.895 0.00 0.00 0.00 2.87
226 243 2.040442 TGGGGAAGCCGATGGAGA 59.960 61.111 0.00 0.00 0.00 3.71
227 244 2.507944 CTGGGGAAGCCGATGGAG 59.492 66.667 0.00 0.00 0.00 3.86
243 260 4.096003 CCCACCCATCGAACCGCT 62.096 66.667 0.00 0.00 0.00 5.52
278 295 4.516698 TCCTTAACTATGTACGGATCGACC 59.483 45.833 0.00 0.00 0.00 4.79
287 304 9.761504 GAGAAACCCTAATCCTTAACTATGTAC 57.238 37.037 0.00 0.00 0.00 2.90
301 318 0.988832 TGCCACCGAGAAACCCTAAT 59.011 50.000 0.00 0.00 0.00 1.73
320 337 1.687660 TGCTGCCACAATCAACAATGT 59.312 42.857 0.00 0.00 0.00 2.71
324 341 0.669619 CACTGCTGCCACAATCAACA 59.330 50.000 0.00 0.00 0.00 3.33
325 342 0.665369 GCACTGCTGCCACAATCAAC 60.665 55.000 0.00 0.00 37.45 3.18
367 384 0.103937 GAGATGGACAAGCCGGAGAG 59.896 60.000 5.05 0.00 40.66 3.20
402 419 4.980805 TGAGTCGTTGGTGCCGCC 62.981 66.667 0.00 0.00 37.90 6.13
409 426 0.390603 TTATGCCCGTGAGTCGTTGG 60.391 55.000 0.00 0.00 37.94 3.77
413 430 1.202533 AGGATTTATGCCCGTGAGTCG 60.203 52.381 0.00 0.00 39.52 4.18
460 478 2.027469 CCCTGTAAACCTTAGCCTCGTT 60.027 50.000 0.00 0.00 0.00 3.85
470 488 1.909700 TCGACGTACCCTGTAAACCT 58.090 50.000 0.00 0.00 0.00 3.50
497 515 2.358737 GGGGAGTGGTTGTGAGCG 60.359 66.667 0.00 0.00 0.00 5.03
498 516 2.034221 GGGGGAGTGGTTGTGAGC 59.966 66.667 0.00 0.00 0.00 4.26
513 531 3.743017 CACATGGGGTGGGAGGGG 61.743 72.222 0.00 0.00 44.04 4.79
520 538 2.098426 GCACCAAACCACATGGGGTG 62.098 60.000 23.37 11.30 43.60 4.61
521 539 1.836604 GCACCAAACCACATGGGGT 60.837 57.895 15.92 15.92 43.60 4.95
524 542 0.827089 TGGAGCACCAAACCACATGG 60.827 55.000 0.00 0.00 43.91 3.66
530 548 0.108585 TGAGTCTGGAGCACCAAACC 59.891 55.000 3.90 0.00 46.32 3.27
533 551 1.649321 AGATGAGTCTGGAGCACCAA 58.351 50.000 3.90 0.00 46.32 3.67
543 561 2.351835 CCGACGTGACAAAGATGAGTCT 60.352 50.000 0.00 0.00 35.81 3.24
545 563 1.340248 ACCGACGTGACAAAGATGAGT 59.660 47.619 0.00 0.00 0.00 3.41
571 590 1.153568 CGTCACACCGGCATGAGAT 60.154 57.895 8.45 0.00 0.00 2.75
594 613 7.656137 TCCAATAGCATACCTCGTTATTTCTTC 59.344 37.037 0.00 0.00 0.00 2.87
595 614 7.506114 TCCAATAGCATACCTCGTTATTTCTT 58.494 34.615 0.00 0.00 0.00 2.52
604 623 6.260936 AGTTGAAAATCCAATAGCATACCTCG 59.739 38.462 0.00 0.00 0.00 4.63
609 628 9.241919 TGAAAGAGTTGAAAATCCAATAGCATA 57.758 29.630 0.00 0.00 0.00 3.14
649 669 4.935808 CGCTGACCTAACACCTTTAAGAAT 59.064 41.667 0.00 0.00 0.00 2.40
654 674 4.060205 GTTTCGCTGACCTAACACCTTTA 58.940 43.478 0.00 0.00 0.00 1.85
657 677 1.692519 AGTTTCGCTGACCTAACACCT 59.307 47.619 0.00 0.00 0.00 4.00
667 687 1.277842 TGAAGGCCATAGTTTCGCTGA 59.722 47.619 5.01 0.00 0.00 4.26
671 691 3.535561 AGTCATGAAGGCCATAGTTTCG 58.464 45.455 5.01 0.00 33.31 3.46
675 695 4.551671 AGAGTAGTCATGAAGGCCATAGT 58.448 43.478 5.01 0.00 33.31 2.12
676 696 5.543507 AAGAGTAGTCATGAAGGCCATAG 57.456 43.478 5.01 0.00 33.31 2.23
678 698 5.367937 ACATAAGAGTAGTCATGAAGGCCAT 59.632 40.000 5.01 0.00 35.44 4.40
686 707 8.598924 GTTGTTGATCACATAAGAGTAGTCATG 58.401 37.037 0.00 0.00 34.43 3.07
693 714 5.538118 TGTCGTTGTTGATCACATAAGAGT 58.462 37.500 0.00 0.00 34.43 3.24
695 716 4.929211 CCTGTCGTTGTTGATCACATAAGA 59.071 41.667 0.00 0.00 34.43 2.10
699 720 1.806542 GCCTGTCGTTGTTGATCACAT 59.193 47.619 0.00 0.00 34.43 3.21
717 738 2.032620 TCTCCATCCTCGAAGTAAGCC 58.967 52.381 0.00 0.00 0.00 4.35
725 746 1.035923 GCATGACTCTCCATCCTCGA 58.964 55.000 0.00 0.00 0.00 4.04
729 750 1.539929 CCTTCGCATGACTCTCCATCC 60.540 57.143 0.00 0.00 0.00 3.51
737 758 2.437359 GCCTGCCTTCGCATGACT 60.437 61.111 0.00 0.00 46.11 3.41
763 784 4.899502 ACACATTGTCTTCTCCTTGGTAG 58.100 43.478 0.00 0.00 0.00 3.18
767 788 3.077359 GGGACACATTGTCTTCTCCTTG 58.923 50.000 6.29 0.00 46.19 3.61
768 789 2.711009 TGGGACACATTGTCTTCTCCTT 59.289 45.455 6.29 0.00 46.19 3.36
769 790 2.338809 TGGGACACATTGTCTTCTCCT 58.661 47.619 6.29 0.00 46.19 3.69
770 791 2.859165 TGGGACACATTGTCTTCTCC 57.141 50.000 6.29 0.24 46.19 3.71
813 834 5.414765 ACGGAAATTACATTGGAGTCTTTCC 59.585 40.000 6.30 6.30 46.98 3.13
814 835 6.496338 ACGGAAATTACATTGGAGTCTTTC 57.504 37.500 0.00 0.00 0.00 2.62
817 838 8.575649 AAAATACGGAAATTACATTGGAGTCT 57.424 30.769 0.00 0.00 0.00 3.24
835 856 8.126700 AGGAGTACAAACAACTTGAAAAATACG 58.873 33.333 0.00 0.00 38.50 3.06
844 865 5.339990 CAAACCAGGAGTACAAACAACTTG 58.660 41.667 0.00 0.00 41.19 3.16
845 866 4.401202 CCAAACCAGGAGTACAAACAACTT 59.599 41.667 0.00 0.00 0.00 2.66
846 867 3.951680 CCAAACCAGGAGTACAAACAACT 59.048 43.478 0.00 0.00 0.00 3.16
867 948 8.218338 TCAGATTCAGAATTTCTATTTCTGCC 57.782 34.615 18.05 2.00 46.23 4.85
876 957 8.930846 TTTCCTTCTTCAGATTCAGAATTTCT 57.069 30.769 0.00 0.00 0.00 2.52
906 987 1.067776 ACCGACTGACGAATGGAGTTC 60.068 52.381 0.22 0.00 45.77 3.01
908 989 0.526662 GACCGACTGACGAATGGAGT 59.473 55.000 0.22 0.00 45.77 3.85
920 1001 1.003355 TAAGACCGACCGACCGACT 60.003 57.895 0.00 0.00 0.00 4.18
928 1009 0.389948 CTGTGCTGGTAAGACCGACC 60.390 60.000 0.00 0.00 42.58 4.79
929 1010 1.014564 GCTGTGCTGGTAAGACCGAC 61.015 60.000 0.00 0.00 42.58 4.79
930 1011 1.292223 GCTGTGCTGGTAAGACCGA 59.708 57.895 0.00 0.00 42.58 4.69
932 1013 0.250295 TGTGCTGTGCTGGTAAGACC 60.250 55.000 0.00 0.00 39.22 3.85
933 1014 1.151668 CTGTGCTGTGCTGGTAAGAC 58.848 55.000 0.00 0.00 0.00 3.01
934 1015 0.758734 ACTGTGCTGTGCTGGTAAGA 59.241 50.000 0.00 0.00 0.00 2.10
935 1016 2.341257 CTACTGTGCTGTGCTGGTAAG 58.659 52.381 0.00 0.00 0.00 2.34
936 1017 1.608025 GCTACTGTGCTGTGCTGGTAA 60.608 52.381 0.00 0.00 0.00 2.85
937 1018 0.037326 GCTACTGTGCTGTGCTGGTA 60.037 55.000 0.00 0.00 0.00 3.25
938 1019 1.302033 GCTACTGTGCTGTGCTGGT 60.302 57.895 0.00 0.00 0.00 4.00
939 1020 1.296755 CTGCTACTGTGCTGTGCTGG 61.297 60.000 0.00 0.00 0.00 4.85
940 1021 0.602106 ACTGCTACTGTGCTGTGCTG 60.602 55.000 11.61 0.00 42.14 4.41
941 1022 0.320247 GACTGCTACTGTGCTGTGCT 60.320 55.000 15.29 0.00 43.38 4.40
942 1023 0.601046 TGACTGCTACTGTGCTGTGC 60.601 55.000 15.29 9.85 43.38 4.57
943 1024 1.143305 GTGACTGCTACTGTGCTGTG 58.857 55.000 15.29 5.03 43.38 3.66
944 1025 0.034059 GGTGACTGCTACTGTGCTGT 59.966 55.000 12.01 12.01 45.40 4.40
957 1038 4.250305 GGTGCCGTGGTGGTGACT 62.250 66.667 0.00 0.00 41.21 3.41
970 1051 3.842925 TTGGGCAACTCTCCGGTGC 62.843 63.158 0.00 2.79 0.00 5.01
977 1058 2.032681 GAGCGGTTGGGCAACTCT 59.967 61.111 0.00 0.00 40.94 3.24
979 1060 3.884774 TGGAGCGGTTGGGCAACT 61.885 61.111 0.00 0.00 40.94 3.16
984 1065 4.096003 ATCGGTGGAGCGGTTGGG 62.096 66.667 0.00 0.00 0.00 4.12
1458 1550 5.609533 TTTACTCTTACCTGTATCCTGGC 57.390 43.478 0.00 0.00 33.14 4.85
1487 1579 1.756950 CGTAGGAGCTACCAGGGCA 60.757 63.158 0.00 0.00 42.04 5.36
1488 1580 1.455217 TCGTAGGAGCTACCAGGGC 60.455 63.158 0.00 0.00 42.04 5.19
1491 1583 4.978083 TTTAACTCGTAGGAGCTACCAG 57.022 45.455 12.30 0.00 44.48 4.00
1492 1584 4.708421 ACATTTAACTCGTAGGAGCTACCA 59.292 41.667 12.30 0.00 44.48 3.25
1494 1586 4.503370 GCACATTTAACTCGTAGGAGCTAC 59.497 45.833 12.30 0.00 44.48 3.58
1495 1587 4.158949 TGCACATTTAACTCGTAGGAGCTA 59.841 41.667 12.30 1.90 44.48 3.32
1506 1630 1.890876 TGGAGCGTGCACATTTAACT 58.109 45.000 18.64 3.45 0.00 2.24
1628 1755 5.415701 AGAGACAGTGTGTTTTGTCAACATT 59.584 36.000 0.00 0.00 44.72 2.71
1629 1756 4.943705 AGAGACAGTGTGTTTTGTCAACAT 59.056 37.500 0.00 0.00 44.72 2.71
1632 1759 4.323417 ACAGAGACAGTGTGTTTTGTCAA 58.677 39.130 0.00 0.00 44.72 3.18
1656 1783 9.581289 TTTTCCTGAACCTAAACATGAATCTAA 57.419 29.630 0.00 0.00 0.00 2.10
1696 1823 6.536941 GTGAAATTCTGGTCCAATAGAGAGTC 59.463 42.308 0.00 0.00 0.00 3.36
1697 1824 6.013379 TGTGAAATTCTGGTCCAATAGAGAGT 60.013 38.462 0.00 0.00 0.00 3.24
1698 1825 6.314896 GTGTGAAATTCTGGTCCAATAGAGAG 59.685 42.308 0.00 0.00 0.00 3.20
1699 1826 6.173339 GTGTGAAATTCTGGTCCAATAGAGA 58.827 40.000 0.00 0.00 0.00 3.10
1700 1827 5.939883 TGTGTGAAATTCTGGTCCAATAGAG 59.060 40.000 0.00 0.00 0.00 2.43
1704 1831 4.214310 TGTGTGTGAAATTCTGGTCCAAT 58.786 39.130 0.00 0.00 0.00 3.16
1823 1952 4.637534 GCATCTGGCTGAATTTCTACTCAA 59.362 41.667 0.00 0.00 40.25 3.02
1845 1974 0.109412 AGCGACCGTGTTACAGTAGC 60.109 55.000 2.60 2.60 33.00 3.58
1854 1983 1.132643 GAATCTCAGTAGCGACCGTGT 59.867 52.381 0.00 0.00 0.00 4.49
1859 1988 7.539366 GGAGTATTAATGAATCTCAGTAGCGAC 59.461 40.741 0.00 0.00 28.20 5.19
1883 2016 5.626116 GCTCTTGTATTTCTTTACGGAGGGA 60.626 44.000 0.00 0.00 31.29 4.20
1884 2017 4.571176 GCTCTTGTATTTCTTTACGGAGGG 59.429 45.833 0.00 0.00 31.29 4.30
1885 2018 5.175859 TGCTCTTGTATTTCTTTACGGAGG 58.824 41.667 0.00 0.00 31.29 4.30
1886 2019 6.910536 ATGCTCTTGTATTTCTTTACGGAG 57.089 37.500 0.00 0.00 32.54 4.63
1887 2020 7.681939 AAATGCTCTTGTATTTCTTTACGGA 57.318 32.000 0.00 0.00 34.22 4.69
1888 2021 8.879759 TCTAAATGCTCTTGTATTTCTTTACGG 58.120 33.333 0.00 0.00 38.89 4.02
1893 2026 9.678260 AGTGATCTAAATGCTCTTGTATTTCTT 57.322 29.630 0.00 0.00 38.89 2.52
1897 2030 9.757227 GAGTAGTGATCTAAATGCTCTTGTATT 57.243 33.333 0.00 0.00 0.00 1.89
1898 2031 9.142014 AGAGTAGTGATCTAAATGCTCTTGTAT 57.858 33.333 0.00 0.00 28.20 2.29
1899 2032 8.526667 AGAGTAGTGATCTAAATGCTCTTGTA 57.473 34.615 0.00 0.00 28.20 2.41
1900 2033 7.416964 AGAGTAGTGATCTAAATGCTCTTGT 57.583 36.000 0.00 0.00 28.20 3.16
1901 2034 8.629158 ACTAGAGTAGTGATCTAAATGCTCTTG 58.371 37.037 6.46 7.23 37.69 3.02
1902 2035 8.760980 ACTAGAGTAGTGATCTAAATGCTCTT 57.239 34.615 6.46 0.00 37.69 2.85
1933 2066 9.462606 CCCCTGTAAAGAAATATAAGAGTGTTT 57.537 33.333 0.00 0.00 0.00 2.83
1934 2067 8.832735 TCCCCTGTAAAGAAATATAAGAGTGTT 58.167 33.333 0.00 0.00 0.00 3.32
1935 2068 8.388656 TCCCCTGTAAAGAAATATAAGAGTGT 57.611 34.615 0.00 0.00 0.00 3.55
1936 2069 8.487028 ACTCCCCTGTAAAGAAATATAAGAGTG 58.513 37.037 0.00 0.00 0.00 3.51
1937 2070 8.625467 ACTCCCCTGTAAAGAAATATAAGAGT 57.375 34.615 0.00 0.00 0.00 3.24
1938 2071 9.984190 GTACTCCCCTGTAAAGAAATATAAGAG 57.016 37.037 0.00 0.00 0.00 2.85
1939 2072 9.496710 TGTACTCCCCTGTAAAGAAATATAAGA 57.503 33.333 0.00 0.00 0.00 2.10
1942 2075 9.670442 AGATGTACTCCCCTGTAAAGAAATATA 57.330 33.333 0.00 0.00 0.00 0.86
1943 2076 8.568617 AGATGTACTCCCCTGTAAAGAAATAT 57.431 34.615 0.00 0.00 0.00 1.28
1944 2077 7.622081 TGAGATGTACTCCCCTGTAAAGAAATA 59.378 37.037 0.00 0.00 44.34 1.40
1945 2078 6.443849 TGAGATGTACTCCCCTGTAAAGAAAT 59.556 38.462 0.00 0.00 44.34 2.17
1946 2079 5.783360 TGAGATGTACTCCCCTGTAAAGAAA 59.217 40.000 0.00 0.00 44.34 2.52
1947 2080 5.338632 TGAGATGTACTCCCCTGTAAAGAA 58.661 41.667 0.00 0.00 44.34 2.52
1948 2081 4.942944 TGAGATGTACTCCCCTGTAAAGA 58.057 43.478 0.00 0.00 44.34 2.52
1949 2082 5.453903 CCATGAGATGTACTCCCCTGTAAAG 60.454 48.000 0.00 0.00 44.34 1.85
1950 2083 4.408921 CCATGAGATGTACTCCCCTGTAAA 59.591 45.833 0.00 0.00 44.34 2.01
1951 2084 3.967326 CCATGAGATGTACTCCCCTGTAA 59.033 47.826 0.00 0.00 44.34 2.41
1952 2085 3.576861 CCATGAGATGTACTCCCCTGTA 58.423 50.000 0.00 0.00 44.34 2.74
1953 2086 2.402564 CCATGAGATGTACTCCCCTGT 58.597 52.381 0.00 0.00 44.34 4.00
1954 2087 1.696336 CCCATGAGATGTACTCCCCTG 59.304 57.143 0.00 0.00 44.34 4.45
1955 2088 1.580658 TCCCATGAGATGTACTCCCCT 59.419 52.381 0.00 0.00 44.34 4.79
1956 2089 2.103153 TCCCATGAGATGTACTCCCC 57.897 55.000 0.00 0.00 44.34 4.81
1957 2090 3.515901 GGTATCCCATGAGATGTACTCCC 59.484 52.174 0.00 0.00 44.34 4.30
1958 2091 4.421131 AGGTATCCCATGAGATGTACTCC 58.579 47.826 0.00 0.00 44.34 3.85
1959 2092 5.305644 ACAAGGTATCCCATGAGATGTACTC 59.694 44.000 0.00 0.00 45.11 2.59
1960 2093 5.219739 ACAAGGTATCCCATGAGATGTACT 58.780 41.667 0.00 0.00 33.58 2.73
1961 2094 5.552870 ACAAGGTATCCCATGAGATGTAC 57.447 43.478 0.00 0.00 33.58 2.90
1962 2095 7.016296 TGATACAAGGTATCCCATGAGATGTA 58.984 38.462 12.44 0.00 33.58 2.29
1963 2096 5.846164 TGATACAAGGTATCCCATGAGATGT 59.154 40.000 12.44 0.00 33.58 3.06
1964 2097 6.364568 TGATACAAGGTATCCCATGAGATG 57.635 41.667 12.44 0.00 33.58 2.90
1973 2106 8.671921 CATGAGCAATAATGATACAAGGTATCC 58.328 37.037 12.44 0.00 0.00 2.59
1975 2108 9.578576 AACATGAGCAATAATGATACAAGGTAT 57.421 29.630 0.00 0.00 0.00 2.73
1990 2123 6.276832 AGAAATTGTAGCAACATGAGCAAT 57.723 33.333 15.23 5.71 34.97 3.56
1991 2124 5.710513 AGAAATTGTAGCAACATGAGCAA 57.289 34.783 15.23 3.92 34.97 3.91
1992 2125 6.598850 TGATAGAAATTGTAGCAACATGAGCA 59.401 34.615 15.23 1.75 34.97 4.26
1995 2128 7.920160 TGTGATAGAAATTGTAGCAACATGA 57.080 32.000 0.00 0.00 34.97 3.07
2150 2284 1.299976 CAGGTAGGAGGGTGGCAAC 59.700 63.158 0.00 0.00 0.00 4.17
2433 2577 0.395724 CCCTGCCCAAGTGATTACCC 60.396 60.000 0.00 0.00 0.00 3.69
2488 2646 7.699878 ACAAGGGAATGGAAGTAAAAGTCTAT 58.300 34.615 0.00 0.00 0.00 1.98
2542 2883 1.534729 AATTCGTGGGCAGAGTTTCC 58.465 50.000 0.00 0.00 0.00 3.13
2636 3070 4.349048 TCACTGATTGATTAGAGGGGATGG 59.651 45.833 0.00 0.00 0.00 3.51
2640 3074 7.038445 AGTCATATCACTGATTGATTAGAGGGG 60.038 40.741 0.00 0.00 42.87 4.79
2738 3172 7.880059 TTGATCAGATTCATACAAGCTATCG 57.120 36.000 0.00 0.00 0.00 2.92
2937 3372 6.751157 AGAAAGAAAATTGTGTCATGATGCA 58.249 32.000 0.00 0.00 0.00 3.96
3113 3548 8.970691 AAAGATAACAAAATGTACATGCAGAC 57.029 30.769 9.63 0.00 0.00 3.51
3158 3593 2.649531 AGGATCAACGGTTTGGTCAA 57.350 45.000 1.95 0.00 43.77 3.18
3175 3610 7.066404 GGAGGAGATTTTCAGCTTAAGTTTAGG 59.934 40.741 4.02 0.00 0.00 2.69
3595 4030 9.243637 ACACAAACAAATCACATTATGTACAAC 57.756 29.630 0.00 0.00 0.00 3.32
3638 4074 4.682787 TCATAGCATTCAACTACACGGAG 58.317 43.478 0.00 0.00 0.00 4.63
3640 4076 5.049828 TGATCATAGCATTCAACTACACGG 58.950 41.667 0.00 0.00 0.00 4.94
3698 4134 7.232330 ACTTATATTTAGGAACGGAGGGAGTAC 59.768 40.741 0.00 0.00 0.00 2.73
3699 4135 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
3700 4136 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
3701 4137 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
3702 4138 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
3703 4139 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
3704 4140 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
3705 4141 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
3722 4158 9.646427 GTTCATAGTGAAATCTCTACAAAGACT 57.354 33.333 0.00 0.00 38.22 3.24
3723 4159 8.874816 GGTTCATAGTGAAATCTCTACAAAGAC 58.125 37.037 0.00 0.00 38.22 3.01
3724 4160 8.593679 TGGTTCATAGTGAAATCTCTACAAAGA 58.406 33.333 0.00 0.00 38.22 2.52
3725 4161 8.660373 GTGGTTCATAGTGAAATCTCTACAAAG 58.340 37.037 0.00 0.00 38.22 2.77
3726 4162 8.154203 TGTGGTTCATAGTGAAATCTCTACAAA 58.846 33.333 0.00 0.00 38.22 2.83
3727 4163 7.676004 TGTGGTTCATAGTGAAATCTCTACAA 58.324 34.615 0.00 0.00 38.22 2.41
3728 4164 7.239763 TGTGGTTCATAGTGAAATCTCTACA 57.760 36.000 0.00 0.00 38.22 2.74
3729 4165 9.250624 GTATGTGGTTCATAGTGAAATCTCTAC 57.749 37.037 0.00 0.00 38.22 2.59
3730 4166 8.135529 CGTATGTGGTTCATAGTGAAATCTCTA 58.864 37.037 0.00 0.00 38.22 2.43
3731 4167 6.980978 CGTATGTGGTTCATAGTGAAATCTCT 59.019 38.462 0.00 0.00 38.22 3.10
3732 4168 6.201044 CCGTATGTGGTTCATAGTGAAATCTC 59.799 42.308 0.00 0.00 38.22 2.75
3733 4169 6.049149 CCGTATGTGGTTCATAGTGAAATCT 58.951 40.000 0.00 0.00 38.22 2.40
3734 4170 6.046593 TCCGTATGTGGTTCATAGTGAAATC 58.953 40.000 0.00 0.00 38.22 2.17
3735 4171 5.984725 TCCGTATGTGGTTCATAGTGAAAT 58.015 37.500 0.00 0.00 38.22 2.17
3736 4172 5.408880 TCCGTATGTGGTTCATAGTGAAA 57.591 39.130 0.00 0.00 38.22 2.69
3737 4173 5.105106 ACATCCGTATGTGGTTCATAGTGAA 60.105 40.000 0.00 0.00 44.79 3.18
3738 4174 4.404394 ACATCCGTATGTGGTTCATAGTGA 59.596 41.667 0.00 0.00 44.79 3.41
3739 4175 4.693283 ACATCCGTATGTGGTTCATAGTG 58.307 43.478 0.00 0.00 44.79 2.74
3740 4176 6.665992 ATACATCCGTATGTGGTTCATAGT 57.334 37.500 3.56 0.00 45.99 2.12
3741 4177 9.952188 CTATATACATCCGTATGTGGTTCATAG 57.048 37.037 3.56 0.80 45.99 2.23
3742 4178 9.689501 TCTATATACATCCGTATGTGGTTCATA 57.310 33.333 3.56 0.00 45.99 2.15
3743 4179 8.589701 TCTATATACATCCGTATGTGGTTCAT 57.410 34.615 3.56 0.00 45.99 2.57
3744 4180 8.466798 CATCTATATACATCCGTATGTGGTTCA 58.533 37.037 3.56 0.00 45.99 3.18
3745 4181 7.435488 GCATCTATATACATCCGTATGTGGTTC 59.565 40.741 3.56 0.00 45.99 3.62
3746 4182 7.093509 TGCATCTATATACATCCGTATGTGGTT 60.094 37.037 3.56 0.00 45.99 3.67
3747 4183 6.379988 TGCATCTATATACATCCGTATGTGGT 59.620 38.462 3.56 0.00 45.99 4.16
3748 4184 6.805713 TGCATCTATATACATCCGTATGTGG 58.194 40.000 3.56 0.00 45.99 4.17
3749 4185 8.877808 AATGCATCTATATACATCCGTATGTG 57.122 34.615 3.56 0.00 45.99 3.21
3754 4190 9.944376 ACTTAAAATGCATCTATATACATCCGT 57.056 29.630 0.00 0.00 0.00 4.69
3777 4213 8.607459 CGAAGCAAAATGAGTGAATCTATACTT 58.393 33.333 0.00 0.00 0.00 2.24
3778 4214 7.766278 ACGAAGCAAAATGAGTGAATCTATACT 59.234 33.333 0.00 0.00 0.00 2.12
3779 4215 7.910304 ACGAAGCAAAATGAGTGAATCTATAC 58.090 34.615 0.00 0.00 0.00 1.47
3780 4216 9.764363 ATACGAAGCAAAATGAGTGAATCTATA 57.236 29.630 0.00 0.00 0.00 1.31
3781 4217 6.992063 ACGAAGCAAAATGAGTGAATCTAT 57.008 33.333 0.00 0.00 0.00 1.98
3782 4218 7.549134 ACATACGAAGCAAAATGAGTGAATCTA 59.451 33.333 0.00 0.00 0.00 1.98
3783 4219 6.372659 ACATACGAAGCAAAATGAGTGAATCT 59.627 34.615 0.00 0.00 0.00 2.40
3784 4220 6.467047 CACATACGAAGCAAAATGAGTGAATC 59.533 38.462 0.00 0.00 0.00 2.52
3785 4221 6.317088 CACATACGAAGCAAAATGAGTGAAT 58.683 36.000 0.00 0.00 0.00 2.57
3786 4222 5.334802 CCACATACGAAGCAAAATGAGTGAA 60.335 40.000 0.00 0.00 0.00 3.18
3787 4223 4.154015 CCACATACGAAGCAAAATGAGTGA 59.846 41.667 0.00 0.00 0.00 3.41
3788 4224 4.083324 ACCACATACGAAGCAAAATGAGTG 60.083 41.667 0.00 0.00 0.00 3.51
3789 4225 4.072131 ACCACATACGAAGCAAAATGAGT 58.928 39.130 0.00 0.00 0.00 3.41
3790 4226 4.437390 GGACCACATACGAAGCAAAATGAG 60.437 45.833 0.00 0.00 0.00 2.90
3791 4227 3.438781 GGACCACATACGAAGCAAAATGA 59.561 43.478 0.00 0.00 0.00 2.57
3792 4228 3.190327 TGGACCACATACGAAGCAAAATG 59.810 43.478 0.00 0.00 0.00 2.32
3793 4229 3.417101 TGGACCACATACGAAGCAAAAT 58.583 40.909 0.00 0.00 0.00 1.82
3794 4230 2.852449 TGGACCACATACGAAGCAAAA 58.148 42.857 0.00 0.00 0.00 2.44
3795 4231 2.552599 TGGACCACATACGAAGCAAA 57.447 45.000 0.00 0.00 0.00 3.68
3796 4232 2.779755 ATGGACCACATACGAAGCAA 57.220 45.000 0.00 0.00 38.26 3.91
3797 4233 3.028130 TCTATGGACCACATACGAAGCA 58.972 45.455 0.00 0.00 41.03 3.91
3798 4234 3.728076 TCTATGGACCACATACGAAGC 57.272 47.619 0.00 0.00 41.03 3.86
3799 4235 7.926555 AGTAATTTCTATGGACCACATACGAAG 59.073 37.037 0.00 0.00 41.03 3.79
3800 4236 7.788026 AGTAATTTCTATGGACCACATACGAA 58.212 34.615 0.00 0.00 41.03 3.85
3801 4237 7.356089 AGTAATTTCTATGGACCACATACGA 57.644 36.000 0.00 0.00 41.03 3.43
3802 4238 6.645415 GGAGTAATTTCTATGGACCACATACG 59.355 42.308 0.00 0.00 41.03 3.06
3803 4239 7.506114 TGGAGTAATTTCTATGGACCACATAC 58.494 38.462 0.00 0.00 41.03 2.39
3804 4240 7.684317 TGGAGTAATTTCTATGGACCACATA 57.316 36.000 0.00 0.00 41.03 2.29
3805 4241 6.575244 TGGAGTAATTTCTATGGACCACAT 57.425 37.500 0.00 0.00 43.68 3.21
3806 4242 6.381498 TTGGAGTAATTTCTATGGACCACA 57.619 37.500 0.00 0.00 0.00 4.17
3807 4243 7.065923 GTCTTTGGAGTAATTTCTATGGACCAC 59.934 40.741 0.00 0.00 0.00 4.16
3808 4244 7.037586 AGTCTTTGGAGTAATTTCTATGGACCA 60.038 37.037 0.00 0.00 0.00 4.02
3809 4245 7.339482 AGTCTTTGGAGTAATTTCTATGGACC 58.661 38.462 0.00 0.00 0.00 4.46
3810 4246 8.794335 AAGTCTTTGGAGTAATTTCTATGGAC 57.206 34.615 0.00 0.00 0.00 4.02
3823 4259 7.985752 CCGTTCCTAAATATAAGTCTTTGGAGT 59.014 37.037 0.00 0.00 0.00 3.85
3824 4260 8.202137 TCCGTTCCTAAATATAAGTCTTTGGAG 58.798 37.037 0.00 0.00 0.00 3.86
3825 4261 8.081517 TCCGTTCCTAAATATAAGTCTTTGGA 57.918 34.615 0.00 0.00 0.00 3.53
3826 4262 7.441458 CCTCCGTTCCTAAATATAAGTCTTTGG 59.559 40.741 0.00 0.00 0.00 3.28
3827 4263 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
3828 4264 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
3829 4265 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
3830 4266 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
3831 4267 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
3832 4268 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
3833 4269 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3834 4270 7.300658 ACTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
3835 4271 6.856757 ACTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
3836 4272 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
3837 4273 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
3838 4274 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
3839 4275 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
3840 4276 3.525199 AGTACTACTCCCTCCGTTCCTAA 59.475 47.826 0.00 0.00 0.00 2.69
3841 4277 3.118531 AGTACTACTCCCTCCGTTCCTA 58.881 50.000 0.00 0.00 0.00 2.94
3842 4278 1.921748 AGTACTACTCCCTCCGTTCCT 59.078 52.381 0.00 0.00 0.00 3.36
3843 4279 2.092484 AGAGTACTACTCCCTCCGTTCC 60.092 54.545 11.94 0.00 46.18 3.62
3844 4280 3.118298 AGAGAGTACTACTCCCTCCGTTC 60.118 52.174 11.94 2.75 46.18 3.95
3845 4281 2.845586 AGAGAGTACTACTCCCTCCGTT 59.154 50.000 11.94 0.00 46.18 4.44
3846 4282 2.435437 GAGAGAGTACTACTCCCTCCGT 59.565 54.545 14.16 0.00 46.18 4.69
3847 4283 3.116079 GAGAGAGTACTACTCCCTCCG 57.884 57.143 14.16 0.00 46.18 4.63
3849 4285 4.717279 ATGGAGAGAGTACTACTCCCTC 57.283 50.000 29.69 16.03 45.81 4.30
3850 4286 4.141111 GGAATGGAGAGAGTACTACTCCCT 60.141 50.000 29.69 22.90 46.18 4.20
3851 4287 4.146564 GGAATGGAGAGAGTACTACTCCC 58.853 52.174 29.69 22.04 46.18 4.30
3852 4288 4.794334 TGGAATGGAGAGAGTACTACTCC 58.206 47.826 27.85 27.85 46.18 3.85
3853 4289 6.378848 ACTTTGGAATGGAGAGAGTACTACTC 59.621 42.308 16.54 16.54 45.38 2.59
3854 4290 6.257586 ACTTTGGAATGGAGAGAGTACTACT 58.742 40.000 0.00 0.00 0.00 2.57
3871 4307 2.364324 AGTCAGCGACACTTACTTTGGA 59.636 45.455 10.52 0.00 34.60 3.53
3877 4313 5.039480 TGTACTAAGTCAGCGACACTTAC 57.961 43.478 10.52 6.97 35.63 2.34
3886 4322 4.511826 AGCACAACTTTGTACTAAGTCAGC 59.488 41.667 20.50 21.28 39.91 4.26
3889 4325 8.770828 TGATTTAGCACAACTTTGTACTAAGTC 58.229 33.333 20.50 20.40 44.96 3.01
3936 4794 5.536497 AAGGGTTGTCCAATAATCCTTCT 57.464 39.130 0.00 0.00 38.24 2.85
3939 4797 5.536497 AGAAAGGGTTGTCCAATAATCCT 57.464 39.130 0.00 0.00 38.24 3.24
3981 4852 7.610580 TCATTCAATTAACCAAAGAAAGGGT 57.389 32.000 0.00 0.00 39.65 4.34
4203 5085 2.026522 TTTTTCCCAGTGAACGCCG 58.973 52.632 0.00 0.00 31.05 6.46
4255 5138 3.254024 ATTCTCGCAACGCCCCACT 62.254 57.895 0.00 0.00 0.00 4.00
4256 5139 2.746277 ATTCTCGCAACGCCCCAC 60.746 61.111 0.00 0.00 0.00 4.61
4313 5203 2.109425 ATTGGGCGTTTGGTCTAGTC 57.891 50.000 0.00 0.00 0.00 2.59
4393 5283 3.067106 CACCTGAACGCATTACTCAAGT 58.933 45.455 0.00 0.00 0.00 3.16
4398 5288 9.772973 TTATTATTATCACCTGAACGCATTACT 57.227 29.630 0.00 0.00 0.00 2.24
4400 5290 9.549078 TGTTATTATTATCACCTGAACGCATTA 57.451 29.630 0.00 0.00 0.00 1.90
4405 5295 9.698309 ATCTCTGTTATTATTATCACCTGAACG 57.302 33.333 0.00 0.00 0.00 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.