Multiple sequence alignment - TraesCS7A01G120400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G120400 chr7A 100.000 4096 0 0 1 4096 77529319 77533414 0.000000e+00 7564.0
1 TraesCS7A01G120400 chr7A 94.891 274 12 2 2443 2715 84864141 84863869 1.050000e-115 427.0
2 TraesCS7A01G120400 chr7A 87.742 310 31 7 3495 3799 77590644 77590951 5.040000e-94 355.0
3 TraesCS7A01G120400 chr7D 94.339 2314 85 14 1 2303 72433698 72435976 0.000000e+00 3506.0
4 TraesCS7A01G120400 chr7D 93.640 566 24 9 2791 3349 72436169 72436729 0.000000e+00 835.0
5 TraesCS7A01G120400 chr7D 89.412 255 21 4 3421 3670 72436741 72436994 2.380000e-82 316.0
6 TraesCS7A01G120400 chr7D 94.203 138 5 3 2304 2441 72436006 72436140 1.490000e-49 207.0
7 TraesCS7A01G120400 chr7D 100.000 30 0 0 4019 4048 106597807 106597836 5.720000e-04 56.5
8 TraesCS7A01G120400 chr7B 89.030 1103 75 17 2714 3806 15827137 15826071 0.000000e+00 1325.0
9 TraesCS7A01G120400 chr7B 93.238 562 33 3 1297 1858 15828372 15827816 0.000000e+00 822.0
10 TraesCS7A01G120400 chr7B 94.159 428 22 3 1876 2303 15827728 15827304 0.000000e+00 649.0
11 TraesCS7A01G120400 chr7B 84.934 604 67 17 699 1296 15828998 15828413 1.270000e-164 590.0
12 TraesCS7A01G120400 chr7B 93.262 282 18 1 2436 2717 463311122 463311402 8.190000e-112 414.0
13 TraesCS7A01G120400 chr7B 95.070 142 4 3 2304 2443 15827274 15827134 1.920000e-53 220.0
14 TraesCS7A01G120400 chr7B 100.000 28 0 0 7 34 552568561 552568534 7.000000e-03 52.8
15 TraesCS7A01G120400 chr3D 86.771 446 41 7 852 1297 611541596 611542023 7.960000e-132 481.0
16 TraesCS7A01G120400 chr5B 94.643 280 15 0 2438 2717 111623799 111623520 6.290000e-118 435.0
17 TraesCS7A01G120400 chr5B 94.465 271 14 1 2440 2710 320410910 320411179 2.280000e-112 416.0
18 TraesCS7A01G120400 chr5B 100.000 29 0 0 4020 4048 505793018 505793046 2.000000e-03 54.7
19 TraesCS7A01G120400 chr6A 95.522 268 12 0 2443 2710 531702307 531702040 2.930000e-116 429.0
20 TraesCS7A01G120400 chr6A 93.548 279 17 1 2441 2718 48508771 48508493 8.190000e-112 414.0
21 TraesCS7A01G120400 chr6A 93.525 278 17 1 2441 2717 373666582 373666859 2.950000e-111 412.0
22 TraesCS7A01G120400 chr6A 93.525 278 17 1 2441 2717 608314272 608314549 2.950000e-111 412.0
23 TraesCS7A01G120400 chr6A 80.193 207 30 10 202 398 115529913 115529708 1.190000e-30 145.0
24 TraesCS7A01G120400 chr2B 95.185 270 13 0 2441 2710 481884131 481884400 1.050000e-115 427.0
25 TraesCS7A01G120400 chr2B 100.000 28 0 0 7 34 337073770 337073743 7.000000e-03 52.8
26 TraesCS7A01G120400 chr4D 78.138 247 38 13 192 426 25461248 25461490 4.270000e-30 143.0
27 TraesCS7A01G120400 chr4B 79.227 207 32 9 202 398 421735093 421735298 2.570000e-27 134.0
28 TraesCS7A01G120400 chr4B 100.000 31 0 0 4020 4050 533744394 533744424 1.590000e-04 58.4
29 TraesCS7A01G120400 chr2A 79.426 209 28 13 202 398 738969269 738969474 2.570000e-27 134.0
30 TraesCS7A01G120400 chr2A 77.178 241 39 13 202 428 197420218 197419980 4.300000e-25 126.0
31 TraesCS7A01G120400 chr2A 76.793 237 45 8 202 428 758105097 758104861 1.550000e-24 124.0
32 TraesCS7A01G120400 chr2A 100.000 31 0 0 4020 4050 523453584 523453614 1.590000e-04 58.4
33 TraesCS7A01G120400 chr2A 100.000 31 0 0 4020 4050 523454449 523454479 1.590000e-04 58.4
34 TraesCS7A01G120400 chr2A 100.000 28 0 0 7 34 283949389 283949416 7.000000e-03 52.8
35 TraesCS7A01G120400 chr3A 78.125 224 35 12 214 426 523540190 523539970 3.320000e-26 130.0
36 TraesCS7A01G120400 chr5D 77.215 237 40 12 202 426 24615561 24615795 4.300000e-25 126.0
37 TraesCS7A01G120400 chr2D 100.000 33 0 0 3 35 421145650 421145618 1.230000e-05 62.1
38 TraesCS7A01G120400 chr2D 100.000 28 0 0 7 34 243664295 243664322 7.000000e-03 52.8
39 TraesCS7A01G120400 chr5A 100.000 31 0 0 4020 4050 607624484 607624514 1.590000e-04 58.4
40 TraesCS7A01G120400 chr1A 100.000 31 0 0 4020 4050 304941957 304941927 1.590000e-04 58.4
41 TraesCS7A01G120400 chr6D 100.000 29 0 0 4020 4048 132652072 132652100 2.000000e-03 54.7
42 TraesCS7A01G120400 chr6D 100.000 29 0 0 4020 4048 132652204 132652232 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G120400 chr7A 77529319 77533414 4095 False 7564.0 7564 100.0000 1 4096 1 chr7A.!!$F1 4095
1 TraesCS7A01G120400 chr7D 72433698 72436994 3296 False 1216.0 3506 92.8985 1 3670 4 chr7D.!!$F2 3669
2 TraesCS7A01G120400 chr7B 15826071 15828998 2927 True 721.2 1325 91.2862 699 3806 5 chr7B.!!$R2 3107

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
444 446 0.254747 AATCGGATGGCCTTTTCGGA 59.745 50.0 3.32 8.82 33.16 4.55 F
1498 1548 0.531532 CTTTCGCCTCTCATGCCGAT 60.532 55.0 0.00 0.00 0.00 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1718 1768 0.473755 TCCCAGCCATATCGCACAAT 59.526 50.0 0.0 0.0 0.0 2.71 R
3141 3307 0.107268 CCCGGCACATGATCTGATGA 59.893 55.0 0.0 0.0 0.0 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 4.587584 TTTTTCCGACGCCCTAAAATTT 57.412 36.364 0.00 0.00 0.00 1.82
61 62 3.562567 TTTCCGACGCCCTAAAATTTG 57.437 42.857 0.00 0.00 0.00 2.32
83 84 3.119209 GCGTTCTAGTAGCCTAAACCACT 60.119 47.826 0.00 0.00 0.00 4.00
90 91 7.511268 TCTAGTAGCCTAAACCACTTTTTCAA 58.489 34.615 0.00 0.00 0.00 2.69
139 140 6.609212 TGGAGATGCTCTTCTATGTAAGTTCT 59.391 38.462 0.00 0.00 0.00 3.01
188 189 6.893759 TGTTGAACGTTGGTTAATGTATCTG 58.106 36.000 5.00 0.00 36.24 2.90
201 202 3.719268 TGTATCTGGTGACTTGGCATT 57.281 42.857 0.00 0.00 0.00 3.56
269 270 2.325661 TCAGTGGGAGGAGATGTTCA 57.674 50.000 0.00 0.00 0.00 3.18
301 302 3.068165 TGAGTGTCTGTGATGACTTCGTT 59.932 43.478 0.00 0.00 37.79 3.85
306 307 4.202172 TGTCTGTGATGACTTCGTTAACCA 60.202 41.667 0.00 0.00 37.79 3.67
346 347 1.457643 CGGGAGGTGCTCATAGGGA 60.458 63.158 0.00 0.00 31.08 4.20
351 352 2.183679 GAGGTGCTCATAGGGATAGGG 58.816 57.143 0.00 0.00 0.00 3.53
354 355 2.330216 GTGCTCATAGGGATAGGGTGT 58.670 52.381 0.00 0.00 0.00 4.16
373 375 3.924238 GCGTTGTGCATTCATAGGG 57.076 52.632 0.00 0.00 45.45 3.53
382 384 5.424757 TGTGCATTCATAGGGTAAGTGTAC 58.575 41.667 0.00 0.00 0.00 2.90
413 415 7.154656 TGTATGTGAGTATCTATGATTGTGCC 58.845 38.462 0.00 0.00 34.92 5.01
443 445 1.102978 AAATCGGATGGCCTTTTCGG 58.897 50.000 3.32 3.27 0.00 4.30
444 446 0.254747 AATCGGATGGCCTTTTCGGA 59.745 50.000 3.32 8.82 33.16 4.55
455 457 3.802139 GGCCTTTTCGGACAAAGAAAAAG 59.198 43.478 0.00 0.00 44.02 2.27
459 461 5.229260 CCTTTTCGGACAAAGAAAAAGAACG 59.771 40.000 7.75 0.00 44.02 3.95
475 477 0.976641 AACGGAATGCACCAGAGAGA 59.023 50.000 0.00 0.00 0.00 3.10
516 518 4.512571 GCATTTTTGCCAGTTTGACTCAAT 59.487 37.500 0.00 0.00 0.00 2.57
542 544 6.879962 TGTGTACTCTTTGTAATACGTTTGC 58.120 36.000 0.00 0.00 32.25 3.68
605 608 1.816835 GACCACAGAGACATACGACCA 59.183 52.381 0.00 0.00 0.00 4.02
615 618 5.998981 AGAGACATACGACCATCTAAGTAGG 59.001 44.000 0.00 0.00 0.00 3.18
616 619 5.692928 AGACATACGACCATCTAAGTAGGT 58.307 41.667 0.00 0.00 36.90 3.08
648 651 6.701145 TTACCACACAACATTTGTACACAT 57.299 33.333 0.00 0.00 43.23 3.21
649 652 5.181690 ACCACACAACATTTGTACACATC 57.818 39.130 0.00 0.00 43.23 3.06
650 653 4.887071 ACCACACAACATTTGTACACATCT 59.113 37.500 0.00 0.00 43.23 2.90
651 654 5.359576 ACCACACAACATTTGTACACATCTT 59.640 36.000 0.00 0.00 43.23 2.40
652 655 5.686841 CCACACAACATTTGTACACATCTTG 59.313 40.000 8.05 8.05 43.23 3.02
653 656 5.173673 CACACAACATTTGTACACATCTTGC 59.826 40.000 9.19 0.00 43.23 4.01
654 657 5.163571 ACACAACATTTGTACACATCTTGCA 60.164 36.000 9.19 0.00 43.23 4.08
655 658 5.747675 CACAACATTTGTACACATCTTGCAA 59.252 36.000 9.19 0.00 43.23 4.08
656 659 6.255237 CACAACATTTGTACACATCTTGCAAA 59.745 34.615 9.19 0.00 43.23 3.68
657 660 6.815641 ACAACATTTGTACACATCTTGCAAAA 59.184 30.769 9.19 0.00 43.27 2.44
658 661 7.332926 ACAACATTTGTACACATCTTGCAAAAA 59.667 29.630 9.19 0.00 43.27 1.94
742 745 4.041198 GCCTAATTACTACCTACATGCCCA 59.959 45.833 0.00 0.00 0.00 5.36
743 746 5.794894 CCTAATTACTACCTACATGCCCAG 58.205 45.833 0.00 0.00 0.00 4.45
767 771 2.023223 GGTTCGAGCGCCGTACAAA 61.023 57.895 22.00 7.77 39.82 2.83
788 792 7.021196 ACAAAACGTGAAATGGAAAGATATCG 58.979 34.615 0.00 0.00 0.00 2.92
869 873 1.545582 CCATCAGTGATTGCCCGTTTT 59.454 47.619 1.86 0.00 0.00 2.43
891 895 4.403734 TCAAACCGGGCTTATTTCTTTCT 58.596 39.130 6.32 0.00 0.00 2.52
929 933 1.085091 GTCGAGCTTCTCACCGTCTA 58.915 55.000 0.00 0.00 0.00 2.59
1063 1068 7.712639 CCATTAGTGTTGTAGCACTCTTCATAT 59.287 37.037 4.61 0.00 45.63 1.78
1095 1100 1.227089 GACATCTCACCGCTGCGAT 60.227 57.895 25.45 1.85 0.00 4.58
1134 1139 2.135664 AAAGTGTCTTCGTCGACCAG 57.864 50.000 10.58 6.52 32.97 4.00
1205 1210 0.671251 TTCGGCAACAACCAATGGAC 59.329 50.000 6.16 0.00 0.00 4.02
1483 1533 2.741211 GCCGACACCCCGACTTTC 60.741 66.667 0.00 0.00 0.00 2.62
1498 1548 0.531532 CTTTCGCCTCTCATGCCGAT 60.532 55.000 0.00 0.00 0.00 4.18
1546 1596 4.901868 TCAAGGTTAGTATGTCACCCAAC 58.098 43.478 0.00 0.00 0.00 3.77
1667 1717 1.609783 GGTGGCTGCCCTAGTTGAT 59.390 57.895 17.53 0.00 0.00 2.57
1749 1799 1.219469 TGGCTGGGAGGCACTACTATA 59.781 52.381 0.00 0.00 46.47 1.31
1869 1992 0.812014 TGTGCGTTGTCAATGACGGT 60.812 50.000 9.00 0.00 39.52 4.83
1870 1993 0.384230 GTGCGTTGTCAATGACGGTG 60.384 55.000 9.00 1.81 39.52 4.94
1871 1994 1.440353 GCGTTGTCAATGACGGTGC 60.440 57.895 9.00 8.18 39.52 5.01
2002 2130 1.748950 TGTGTTCAAGCAGTGCAAGA 58.251 45.000 19.20 11.68 0.00 3.02
2157 2285 6.016276 AGTGAGTTTTAAACAAGCGGATCATT 60.016 34.615 10.60 0.00 0.00 2.57
2357 2516 8.157476 AGAATAGTTCCATTTTGTACACTCAGT 58.843 33.333 0.00 0.00 0.00 3.41
2422 2582 8.918202 TTCTTCACCAAACTTAATGTCTACAT 57.082 30.769 0.00 0.00 38.41 2.29
2441 2601 3.838317 ACATGTGCTCCCTCTGTAAACTA 59.162 43.478 0.00 0.00 0.00 2.24
2442 2602 4.286032 ACATGTGCTCCCTCTGTAAACTAA 59.714 41.667 0.00 0.00 0.00 2.24
2443 2603 4.537135 TGTGCTCCCTCTGTAAACTAAG 57.463 45.455 0.00 0.00 0.00 2.18
2444 2604 3.260884 TGTGCTCCCTCTGTAAACTAAGG 59.739 47.826 0.00 0.00 0.00 2.69
2446 2606 2.420269 GCTCCCTCTGTAAACTAAGGGC 60.420 54.545 12.83 2.82 46.84 5.19
2447 2607 2.838202 CTCCCTCTGTAAACTAAGGGCA 59.162 50.000 12.83 4.89 46.84 5.36
2449 2609 3.199946 TCCCTCTGTAAACTAAGGGCATG 59.800 47.826 12.83 0.00 46.84 4.06
2450 2610 3.054361 CCCTCTGTAAACTAAGGGCATGT 60.054 47.826 7.25 0.00 41.98 3.21
2451 2611 4.163458 CCCTCTGTAAACTAAGGGCATGTA 59.837 45.833 7.25 0.00 41.98 2.29
2452 2612 5.116882 CCTCTGTAAACTAAGGGCATGTAC 58.883 45.833 0.00 0.00 0.00 2.90
2453 2613 5.338056 CCTCTGTAAACTAAGGGCATGTACA 60.338 44.000 0.00 0.00 0.00 2.90
2454 2614 6.116711 TCTGTAAACTAAGGGCATGTACAA 57.883 37.500 0.00 0.00 0.00 2.41
2455 2615 6.717289 TCTGTAAACTAAGGGCATGTACAAT 58.283 36.000 0.00 0.00 0.00 2.71
2456 2616 6.597672 TCTGTAAACTAAGGGCATGTACAATG 59.402 38.462 0.00 0.12 0.00 2.82
2457 2617 5.650266 TGTAAACTAAGGGCATGTACAATGG 59.350 40.000 0.00 0.00 0.00 3.16
2458 2618 4.316025 AACTAAGGGCATGTACAATGGT 57.684 40.909 0.00 0.00 0.00 3.55
2459 2619 4.316025 ACTAAGGGCATGTACAATGGTT 57.684 40.909 0.00 0.00 0.00 3.67
2460 2620 4.016444 ACTAAGGGCATGTACAATGGTTG 58.984 43.478 0.00 0.00 0.00 3.77
2461 2621 2.897271 AGGGCATGTACAATGGTTGA 57.103 45.000 0.00 0.00 0.00 3.18
2462 2622 3.386932 AGGGCATGTACAATGGTTGAT 57.613 42.857 0.00 0.00 0.00 2.57
2463 2623 4.518278 AGGGCATGTACAATGGTTGATA 57.482 40.909 0.00 0.00 0.00 2.15
2464 2624 4.865905 AGGGCATGTACAATGGTTGATAA 58.134 39.130 0.00 0.00 0.00 1.75
2465 2625 4.889409 AGGGCATGTACAATGGTTGATAAG 59.111 41.667 0.00 0.00 0.00 1.73
2466 2626 4.887071 GGGCATGTACAATGGTTGATAAGA 59.113 41.667 0.00 0.00 0.00 2.10
2467 2627 5.536161 GGGCATGTACAATGGTTGATAAGAT 59.464 40.000 0.00 0.00 0.00 2.40
2468 2628 6.714810 GGGCATGTACAATGGTTGATAAGATA 59.285 38.462 0.00 0.00 0.00 1.98
2469 2629 7.094634 GGGCATGTACAATGGTTGATAAGATAG 60.095 40.741 0.00 0.00 0.00 2.08
2470 2630 7.445402 GGCATGTACAATGGTTGATAAGATAGT 59.555 37.037 0.00 0.00 0.00 2.12
2471 2631 8.499162 GCATGTACAATGGTTGATAAGATAGTC 58.501 37.037 0.00 0.00 0.00 2.59
2472 2632 9.770097 CATGTACAATGGTTGATAAGATAGTCT 57.230 33.333 0.00 0.00 0.00 3.24
2532 2692 6.380079 AAAAGAGTCTACAATGGGTCATCT 57.620 37.500 0.00 0.00 0.00 2.90
2533 2693 5.606348 AAGAGTCTACAATGGGTCATCTC 57.394 43.478 0.00 0.00 0.00 2.75
2534 2694 4.877773 AGAGTCTACAATGGGTCATCTCT 58.122 43.478 0.00 0.00 0.00 3.10
2535 2695 5.276440 AGAGTCTACAATGGGTCATCTCTT 58.724 41.667 0.00 0.00 30.83 2.85
2536 2696 6.436027 AGAGTCTACAATGGGTCATCTCTTA 58.564 40.000 0.00 0.00 30.83 2.10
2537 2697 6.549364 AGAGTCTACAATGGGTCATCTCTTAG 59.451 42.308 0.00 0.00 30.83 2.18
2538 2698 5.069781 AGTCTACAATGGGTCATCTCTTAGC 59.930 44.000 0.00 0.00 0.00 3.09
2539 2699 3.567478 ACAATGGGTCATCTCTTAGCC 57.433 47.619 0.00 0.00 0.00 3.93
2540 2700 3.118531 ACAATGGGTCATCTCTTAGCCT 58.881 45.455 0.00 0.00 34.30 4.58
2541 2701 3.525199 ACAATGGGTCATCTCTTAGCCTT 59.475 43.478 0.00 0.00 34.30 4.35
2542 2702 4.721776 ACAATGGGTCATCTCTTAGCCTTA 59.278 41.667 0.00 0.00 34.30 2.69
2543 2703 5.370880 ACAATGGGTCATCTCTTAGCCTTAT 59.629 40.000 0.00 0.00 34.30 1.73
2544 2704 5.753721 ATGGGTCATCTCTTAGCCTTATC 57.246 43.478 0.00 0.00 34.30 1.75
2545 2705 4.556697 TGGGTCATCTCTTAGCCTTATCA 58.443 43.478 0.00 0.00 34.30 2.15
2546 2706 5.158141 TGGGTCATCTCTTAGCCTTATCAT 58.842 41.667 0.00 0.00 34.30 2.45
2547 2707 5.247110 TGGGTCATCTCTTAGCCTTATCATC 59.753 44.000 0.00 0.00 34.30 2.92
2548 2708 5.247110 GGGTCATCTCTTAGCCTTATCATCA 59.753 44.000 0.00 0.00 0.00 3.07
2549 2709 6.239714 GGGTCATCTCTTAGCCTTATCATCAA 60.240 42.308 0.00 0.00 0.00 2.57
2550 2710 7.393216 GGTCATCTCTTAGCCTTATCATCAAT 58.607 38.462 0.00 0.00 0.00 2.57
2551 2711 8.535335 GGTCATCTCTTAGCCTTATCATCAATA 58.465 37.037 0.00 0.00 0.00 1.90
2552 2712 9.935241 GTCATCTCTTAGCCTTATCATCAATAA 57.065 33.333 0.00 0.00 0.00 1.40
2553 2713 9.935241 TCATCTCTTAGCCTTATCATCAATAAC 57.065 33.333 0.00 0.00 0.00 1.89
2554 2714 9.941325 CATCTCTTAGCCTTATCATCAATAACT 57.059 33.333 0.00 0.00 0.00 2.24
2557 2717 9.364989 CTCTTAGCCTTATCATCAATAACTAGC 57.635 37.037 0.00 0.00 0.00 3.42
2558 2718 8.870116 TCTTAGCCTTATCATCAATAACTAGCA 58.130 33.333 0.00 0.00 0.00 3.49
2559 2719 9.494271 CTTAGCCTTATCATCAATAACTAGCAA 57.506 33.333 0.00 0.00 0.00 3.91
2561 2721 8.930846 AGCCTTATCATCAATAACTAGCAATT 57.069 30.769 0.00 0.00 0.00 2.32
2562 2722 9.359653 AGCCTTATCATCAATAACTAGCAATTT 57.640 29.630 0.00 0.00 0.00 1.82
2563 2723 9.617975 GCCTTATCATCAATAACTAGCAATTTC 57.382 33.333 0.00 0.00 0.00 2.17
2575 2735 9.686683 ATAACTAGCAATTTCTAAAGACATGGT 57.313 29.630 0.00 0.00 0.00 3.55
2576 2736 7.383102 ACTAGCAATTTCTAAAGACATGGTG 57.617 36.000 0.00 0.00 0.00 4.17
2577 2737 7.168219 ACTAGCAATTTCTAAAGACATGGTGA 58.832 34.615 0.00 0.00 0.00 4.02
2578 2738 6.506500 AGCAATTTCTAAAGACATGGTGAG 57.493 37.500 0.00 0.00 0.00 3.51
2579 2739 6.240894 AGCAATTTCTAAAGACATGGTGAGA 58.759 36.000 0.00 0.00 0.00 3.27
2580 2740 6.150140 AGCAATTTCTAAAGACATGGTGAGAC 59.850 38.462 0.00 0.00 0.00 3.36
2581 2741 6.072508 GCAATTTCTAAAGACATGGTGAGACA 60.073 38.462 0.00 0.00 0.00 3.41
2582 2742 7.362401 GCAATTTCTAAAGACATGGTGAGACAT 60.362 37.037 0.00 0.00 0.00 3.06
2583 2743 9.166173 CAATTTCTAAAGACATGGTGAGACATA 57.834 33.333 0.00 0.00 0.00 2.29
2584 2744 9.911788 AATTTCTAAAGACATGGTGAGACATAT 57.088 29.630 0.00 0.00 0.00 1.78
2585 2745 9.911788 ATTTCTAAAGACATGGTGAGACATATT 57.088 29.630 0.00 0.00 0.00 1.28
2586 2746 8.722480 TTCTAAAGACATGGTGAGACATATTG 57.278 34.615 0.00 0.00 0.00 1.90
2587 2747 7.851228 TCTAAAGACATGGTGAGACATATTGT 58.149 34.615 0.00 0.00 0.00 2.71
2588 2748 6.748333 AAAGACATGGTGAGACATATTGTG 57.252 37.500 0.00 0.00 0.00 3.33
2589 2749 4.194640 AGACATGGTGAGACATATTGTGC 58.805 43.478 0.00 0.00 0.00 4.57
2590 2750 4.080695 AGACATGGTGAGACATATTGTGCT 60.081 41.667 0.00 0.00 0.00 4.40
2591 2751 5.129320 AGACATGGTGAGACATATTGTGCTA 59.871 40.000 0.00 0.00 0.00 3.49
2592 2752 5.744171 ACATGGTGAGACATATTGTGCTAA 58.256 37.500 0.00 0.00 0.00 3.09
2593 2753 6.179756 ACATGGTGAGACATATTGTGCTAAA 58.820 36.000 0.00 0.00 0.00 1.85
2594 2754 6.658816 ACATGGTGAGACATATTGTGCTAAAA 59.341 34.615 0.00 0.00 0.00 1.52
2595 2755 6.741992 TGGTGAGACATATTGTGCTAAAAG 57.258 37.500 0.00 0.00 0.00 2.27
2596 2756 6.472016 TGGTGAGACATATTGTGCTAAAAGA 58.528 36.000 0.00 0.00 0.00 2.52
2597 2757 7.112122 TGGTGAGACATATTGTGCTAAAAGAT 58.888 34.615 0.00 0.00 0.00 2.40
2598 2758 7.280876 TGGTGAGACATATTGTGCTAAAAGATC 59.719 37.037 0.00 0.00 0.00 2.75
2599 2759 7.280876 GGTGAGACATATTGTGCTAAAAGATCA 59.719 37.037 0.00 0.00 0.00 2.92
2600 2760 8.834465 GTGAGACATATTGTGCTAAAAGATCAT 58.166 33.333 0.00 0.00 0.00 2.45
2601 2761 9.049523 TGAGACATATTGTGCTAAAAGATCATC 57.950 33.333 0.00 0.00 0.00 2.92
2602 2762 9.270640 GAGACATATTGTGCTAAAAGATCATCT 57.729 33.333 0.00 0.00 0.00 2.90
2603 2763 9.270640 AGACATATTGTGCTAAAAGATCATCTC 57.729 33.333 0.00 0.00 0.00 2.75
2604 2764 9.270640 GACATATTGTGCTAAAAGATCATCTCT 57.729 33.333 0.00 0.00 34.96 3.10
2605 2765 9.624373 ACATATTGTGCTAAAAGATCATCTCTT 57.376 29.630 0.00 0.00 46.44 2.85
2606 2766 9.880064 CATATTGTGCTAAAAGATCATCTCTTG 57.120 33.333 0.00 0.00 43.60 3.02
2607 2767 7.934855 ATTGTGCTAAAAGATCATCTCTTGT 57.065 32.000 0.00 0.00 43.60 3.16
2608 2768 6.974932 TGTGCTAAAAGATCATCTCTTGTC 57.025 37.500 0.00 0.00 43.60 3.18
2609 2769 6.705302 TGTGCTAAAAGATCATCTCTTGTCT 58.295 36.000 0.00 0.00 43.60 3.41
2610 2770 7.164122 TGTGCTAAAAGATCATCTCTTGTCTT 58.836 34.615 0.00 0.00 43.60 3.01
2611 2771 7.332926 TGTGCTAAAAGATCATCTCTTGTCTTC 59.667 37.037 0.00 0.00 43.60 2.87
2612 2772 7.548780 GTGCTAAAAGATCATCTCTTGTCTTCT 59.451 37.037 0.00 0.00 43.60 2.85
2613 2773 7.763528 TGCTAAAAGATCATCTCTTGTCTTCTC 59.236 37.037 0.00 0.00 43.60 2.87
2614 2774 7.981225 GCTAAAAGATCATCTCTTGTCTTCTCT 59.019 37.037 0.00 0.00 43.60 3.10
2615 2775 9.874205 CTAAAAGATCATCTCTTGTCTTCTCTT 57.126 33.333 0.00 0.00 43.60 2.85
2638 2798 9.574516 TCTTAAATAAGAGAAGACAAGCCTTTT 57.425 29.630 0.00 0.00 37.40 2.27
2639 2799 9.833182 CTTAAATAAGAGAAGACAAGCCTTTTC 57.167 33.333 0.00 0.00 35.33 2.29
2640 2800 9.574516 TTAAATAAGAGAAGACAAGCCTTTTCT 57.425 29.630 0.00 0.00 38.69 2.52
2641 2801 8.470657 AAATAAGAGAAGACAAGCCTTTTCTT 57.529 30.769 5.57 5.57 44.56 2.52
2642 2802 9.574516 AAATAAGAGAAGACAAGCCTTTTCTTA 57.425 29.630 5.86 14.67 45.53 2.10
2644 2804 7.446001 AAGAGAAGACAAGCCTTTTCTTATG 57.554 36.000 5.29 0.00 42.29 1.90
2645 2805 6.773638 AGAGAAGACAAGCCTTTTCTTATGA 58.226 36.000 5.29 0.00 35.01 2.15
2646 2806 6.878389 AGAGAAGACAAGCCTTTTCTTATGAG 59.122 38.462 5.29 0.00 35.01 2.90
2647 2807 6.538263 AGAAGACAAGCCTTTTCTTATGAGT 58.462 36.000 5.86 0.00 29.54 3.41
2648 2808 7.001073 AGAAGACAAGCCTTTTCTTATGAGTT 58.999 34.615 5.86 0.00 29.54 3.01
2649 2809 6.809630 AGACAAGCCTTTTCTTATGAGTTC 57.190 37.500 0.00 0.00 0.00 3.01
2650 2810 6.538263 AGACAAGCCTTTTCTTATGAGTTCT 58.462 36.000 0.00 0.00 0.00 3.01
2651 2811 6.652900 AGACAAGCCTTTTCTTATGAGTTCTC 59.347 38.462 0.00 0.00 0.00 2.87
2652 2812 6.538263 ACAAGCCTTTTCTTATGAGTTCTCT 58.462 36.000 1.53 0.00 0.00 3.10
2653 2813 6.652900 ACAAGCCTTTTCTTATGAGTTCTCTC 59.347 38.462 1.53 0.00 40.79 3.20
2654 2814 6.619329 AGCCTTTTCTTATGAGTTCTCTCT 57.381 37.500 1.53 0.00 40.98 3.10
2655 2815 6.639563 AGCCTTTTCTTATGAGTTCTCTCTC 58.360 40.000 1.53 0.00 40.98 3.20
2656 2816 6.440328 AGCCTTTTCTTATGAGTTCTCTCTCT 59.560 38.462 1.53 0.00 40.98 3.10
2657 2817 7.038373 AGCCTTTTCTTATGAGTTCTCTCTCTT 60.038 37.037 1.53 0.00 40.98 2.85
2658 2818 7.277760 GCCTTTTCTTATGAGTTCTCTCTCTTC 59.722 40.741 1.53 0.00 40.98 2.87
2659 2819 7.763985 CCTTTTCTTATGAGTTCTCTCTCTTCC 59.236 40.741 1.53 0.00 40.98 3.46
2660 2820 7.782897 TTTCTTATGAGTTCTCTCTCTTCCA 57.217 36.000 1.53 0.00 40.98 3.53
2661 2821 6.767524 TCTTATGAGTTCTCTCTCTTCCAC 57.232 41.667 1.53 0.00 40.98 4.02
2662 2822 5.654650 TCTTATGAGTTCTCTCTCTTCCACC 59.345 44.000 1.53 0.00 40.98 4.61
2663 2823 3.534357 TGAGTTCTCTCTCTTCCACCT 57.466 47.619 1.53 0.00 40.98 4.00
2664 2824 3.426615 TGAGTTCTCTCTCTTCCACCTC 58.573 50.000 1.53 0.00 40.98 3.85
2665 2825 3.181428 TGAGTTCTCTCTCTTCCACCTCA 60.181 47.826 1.53 0.00 40.98 3.86
2666 2826 4.023291 GAGTTCTCTCTCTTCCACCTCAT 58.977 47.826 0.00 0.00 37.68 2.90
2667 2827 4.023291 AGTTCTCTCTCTTCCACCTCATC 58.977 47.826 0.00 0.00 0.00 2.92
2668 2828 3.746792 TCTCTCTCTTCCACCTCATCA 57.253 47.619 0.00 0.00 0.00 3.07
2669 2829 4.262891 TCTCTCTCTTCCACCTCATCAT 57.737 45.455 0.00 0.00 0.00 2.45
2670 2830 4.618635 TCTCTCTCTTCCACCTCATCATT 58.381 43.478 0.00 0.00 0.00 2.57
2671 2831 5.028802 TCTCTCTCTTCCACCTCATCATTT 58.971 41.667 0.00 0.00 0.00 2.32
2672 2832 6.197903 TCTCTCTCTTCCACCTCATCATTTA 58.802 40.000 0.00 0.00 0.00 1.40
2673 2833 6.843333 TCTCTCTCTTCCACCTCATCATTTAT 59.157 38.462 0.00 0.00 0.00 1.40
2674 2834 7.015098 TCTCTCTCTTCCACCTCATCATTTATC 59.985 40.741 0.00 0.00 0.00 1.75
2675 2835 6.042552 TCTCTCTTCCACCTCATCATTTATCC 59.957 42.308 0.00 0.00 0.00 2.59
2676 2836 5.907662 TCTCTTCCACCTCATCATTTATCCT 59.092 40.000 0.00 0.00 0.00 3.24
2677 2837 7.075797 TCTCTTCCACCTCATCATTTATCCTA 58.924 38.462 0.00 0.00 0.00 2.94
2678 2838 7.015682 TCTCTTCCACCTCATCATTTATCCTAC 59.984 40.741 0.00 0.00 0.00 3.18
2679 2839 5.468540 TCCACCTCATCATTTATCCTACG 57.531 43.478 0.00 0.00 0.00 3.51
2680 2840 4.899457 TCCACCTCATCATTTATCCTACGT 59.101 41.667 0.00 0.00 0.00 3.57
2681 2841 4.991056 CCACCTCATCATTTATCCTACGTG 59.009 45.833 0.00 0.00 0.00 4.49
2682 2842 4.991056 CACCTCATCATTTATCCTACGTGG 59.009 45.833 0.00 0.00 37.10 4.94
2683 2843 3.997021 CCTCATCATTTATCCTACGTGGC 59.003 47.826 0.00 0.00 35.26 5.01
2684 2844 4.503123 CCTCATCATTTATCCTACGTGGCA 60.503 45.833 0.00 0.00 35.26 4.92
2685 2845 4.377021 TCATCATTTATCCTACGTGGCAC 58.623 43.478 7.79 7.79 35.26 5.01
2686 2846 4.100963 TCATCATTTATCCTACGTGGCACT 59.899 41.667 16.72 5.47 35.26 4.40
2687 2847 4.054780 TCATTTATCCTACGTGGCACTC 57.945 45.455 16.72 0.00 35.26 3.51
2688 2848 2.973694 TTTATCCTACGTGGCACTCC 57.026 50.000 16.72 0.00 35.26 3.85
2689 2849 2.154567 TTATCCTACGTGGCACTCCT 57.845 50.000 16.72 0.21 35.26 3.69
2690 2850 3.301794 TTATCCTACGTGGCACTCCTA 57.698 47.619 16.72 1.46 35.26 2.94
2691 2851 2.154567 ATCCTACGTGGCACTCCTAA 57.845 50.000 16.72 0.00 35.26 2.69
2692 2852 1.471119 TCCTACGTGGCACTCCTAAG 58.529 55.000 16.72 0.92 35.26 2.18
2693 2853 1.005097 TCCTACGTGGCACTCCTAAGA 59.995 52.381 16.72 2.12 35.26 2.10
2694 2854 2.032620 CCTACGTGGCACTCCTAAGAT 58.967 52.381 16.72 0.00 0.00 2.40
2695 2855 3.117776 TCCTACGTGGCACTCCTAAGATA 60.118 47.826 16.72 0.00 35.26 1.98
2696 2856 3.253677 CCTACGTGGCACTCCTAAGATAG 59.746 52.174 16.72 0.00 0.00 2.08
2697 2857 1.409427 ACGTGGCACTCCTAAGATAGC 59.591 52.381 16.72 0.00 0.00 2.97
2698 2858 1.409064 CGTGGCACTCCTAAGATAGCA 59.591 52.381 16.72 0.00 0.00 3.49
2699 2859 2.799917 CGTGGCACTCCTAAGATAGCAC 60.800 54.545 16.72 0.00 0.00 4.40
2700 2860 1.762957 TGGCACTCCTAAGATAGCACC 59.237 52.381 0.00 0.00 0.00 5.01
2701 2861 1.762957 GGCACTCCTAAGATAGCACCA 59.237 52.381 0.00 0.00 0.00 4.17
2702 2862 2.370189 GGCACTCCTAAGATAGCACCAT 59.630 50.000 0.00 0.00 0.00 3.55
2703 2863 3.181450 GGCACTCCTAAGATAGCACCATT 60.181 47.826 0.00 0.00 0.00 3.16
2704 2864 3.812053 GCACTCCTAAGATAGCACCATTG 59.188 47.826 0.00 0.00 0.00 2.82
2705 2865 4.684485 GCACTCCTAAGATAGCACCATTGT 60.684 45.833 0.00 0.00 0.00 2.71
2706 2866 5.453339 GCACTCCTAAGATAGCACCATTGTA 60.453 44.000 0.00 0.00 0.00 2.41
2707 2867 5.986135 CACTCCTAAGATAGCACCATTGTAC 59.014 44.000 0.00 0.00 0.00 2.90
2708 2868 5.661312 ACTCCTAAGATAGCACCATTGTACA 59.339 40.000 0.00 0.00 0.00 2.90
2709 2869 6.327626 ACTCCTAAGATAGCACCATTGTACAT 59.672 38.462 0.00 0.00 0.00 2.29
2710 2870 7.509318 ACTCCTAAGATAGCACCATTGTACATA 59.491 37.037 0.00 0.00 0.00 2.29
2711 2871 8.435931 TCCTAAGATAGCACCATTGTACATAT 57.564 34.615 0.00 0.00 0.00 1.78
2712 2872 8.531982 TCCTAAGATAGCACCATTGTACATATC 58.468 37.037 0.00 0.00 0.00 1.63
2773 2933 9.500864 GTTTACAGAGGAAGTAATACTTAGTCG 57.499 37.037 5.55 5.47 38.80 4.18
2795 2955 6.411782 GTCGTGTGTATGCATGATTGTTATTG 59.588 38.462 10.16 0.00 36.85 1.90
2796 2956 6.093357 TCGTGTGTATGCATGATTGTTATTGT 59.907 34.615 10.16 0.00 30.27 2.71
2797 2957 6.746822 CGTGTGTATGCATGATTGTTATTGTT 59.253 34.615 10.16 0.00 0.00 2.83
2798 2958 7.907563 CGTGTGTATGCATGATTGTTATTGTTA 59.092 33.333 10.16 0.00 0.00 2.41
2799 2959 9.734620 GTGTGTATGCATGATTGTTATTGTTAT 57.265 29.630 10.16 0.00 0.00 1.89
2851 3011 1.630369 AGCCAGGATTGTGTGCTTCTA 59.370 47.619 0.00 0.00 0.00 2.10
2882 3042 7.167468 CACATAATAGTTTCATGTCGATCGTGA 59.833 37.037 15.94 8.95 39.93 4.35
2945 3105 1.838112 TTACTTGCAGGGGATTGCTG 58.162 50.000 0.00 0.00 44.38 4.41
3123 3289 0.305922 GCAGCCTAGTTAGCATTGCG 59.694 55.000 2.38 0.00 0.00 4.85
3141 3307 2.231964 TGCGTAGGAAGTTTACCACGAT 59.768 45.455 0.00 0.00 35.60 3.73
3213 3384 0.807667 GCACTCTGCGTGTATGGAGG 60.808 60.000 0.00 0.00 45.57 4.30
3285 3457 5.105675 GGATCTATTACCTTTCTCCCGCTAG 60.106 48.000 0.00 0.00 0.00 3.42
3312 3484 1.117150 CCTCATTTTCCATGCCAGGG 58.883 55.000 0.00 0.00 0.00 4.45
3320 3492 2.051334 TCCATGCCAGGGAAAATACG 57.949 50.000 0.00 0.00 0.00 3.06
3349 3521 8.749354 GGAACAACCTGAAAATGGTAATAGAAT 58.251 33.333 0.00 0.00 36.69 2.40
3377 3550 9.541143 TTTCCTTATGACAATTCAAAGAAAACC 57.459 29.630 0.00 0.00 34.61 3.27
3399 3572 4.595762 CGAGAGGGGAATAACCGAATAA 57.404 45.455 0.00 0.00 40.11 1.40
3401 3574 4.560919 CGAGAGGGGAATAACCGAATAAGG 60.561 50.000 0.00 0.00 40.11 2.69
3402 3575 4.563782 AGAGGGGAATAACCGAATAAGGA 58.436 43.478 0.00 0.00 40.11 3.36
3404 3577 5.611408 AGAGGGGAATAACCGAATAAGGAAT 59.389 40.000 0.00 0.00 40.11 3.01
3405 3578 6.790963 AGAGGGGAATAACCGAATAAGGAATA 59.209 38.462 0.00 0.00 40.11 1.75
3406 3579 7.461363 AGAGGGGAATAACCGAATAAGGAATAT 59.539 37.037 0.00 0.00 40.11 1.28
3407 3580 7.996788 AGGGGAATAACCGAATAAGGAATATT 58.003 34.615 0.00 0.00 40.11 1.28
3408 3581 7.888546 AGGGGAATAACCGAATAAGGAATATTG 59.111 37.037 0.00 0.00 40.11 1.90
3409 3582 7.886446 GGGGAATAACCGAATAAGGAATATTGA 59.114 37.037 0.00 0.00 40.11 2.57
3410 3583 9.462606 GGGAATAACCGAATAAGGAATATTGAT 57.537 33.333 0.00 0.00 40.11 2.57
3418 3591 8.299570 CCGAATAAGGAATATTGATGGGAAAAG 58.700 37.037 0.00 0.00 34.30 2.27
3450 3623 8.364129 GAAATCCTTTCTTATTGTTTTGTGCA 57.636 30.769 0.00 0.00 36.73 4.57
3469 3642 5.184671 TGTGCATACAAATGTAAGGAATGCA 59.815 36.000 13.93 13.93 40.55 3.96
3486 3659 4.741321 ATGCATCGATCCCAACAATTTT 57.259 36.364 0.00 0.00 0.00 1.82
3487 3660 4.533919 TGCATCGATCCCAACAATTTTT 57.466 36.364 0.00 0.00 0.00 1.94
3491 3664 6.931281 TGCATCGATCCCAACAATTTTTAAAA 59.069 30.769 0.00 0.00 0.00 1.52
3565 3743 2.165167 TCTCTTGCTGGGCTGAAATTG 58.835 47.619 0.00 0.00 0.00 2.32
3675 3854 5.265350 TCACATATTCACATGCATTTGGG 57.735 39.130 12.73 0.00 0.00 4.12
3719 3898 1.691801 GGGAACGAGGAATAGGGAGGT 60.692 57.143 0.00 0.00 0.00 3.85
3739 3919 0.253327 GCGGACCAGGGAGAGAAAAT 59.747 55.000 0.00 0.00 0.00 1.82
3742 3922 3.733337 CGGACCAGGGAGAGAAAATATG 58.267 50.000 0.00 0.00 0.00 1.78
3800 3980 1.818522 CGTAGGATAACCTCTCGGGCT 60.819 57.143 0.00 0.00 46.43 5.19
3801 3981 1.887854 GTAGGATAACCTCTCGGGCTC 59.112 57.143 0.00 0.00 46.43 4.70
3806 3986 2.516048 TAACCTCTCGGGCTCAGGCT 62.516 60.000 0.00 0.00 39.10 4.58
3807 3987 3.535962 CCTCTCGGGCTCAGGCTC 61.536 72.222 0.00 0.00 38.73 4.70
3808 3988 3.535962 CTCTCGGGCTCAGGCTCC 61.536 72.222 0.00 0.00 35.01 4.70
3815 3995 4.154347 GCTCAGGCTCCCCGTGAG 62.154 72.222 8.25 8.25 44.47 3.51
3825 4005 2.363795 CCCGTGAGCCTGGGTCTA 60.364 66.667 24.79 10.16 40.76 2.59
3826 4006 2.722201 CCCGTGAGCCTGGGTCTAC 61.722 68.421 24.79 18.92 40.76 2.59
3827 4007 1.982395 CCGTGAGCCTGGGTCTACA 60.982 63.158 24.79 4.58 0.00 2.74
3828 4008 1.541310 CCGTGAGCCTGGGTCTACAA 61.541 60.000 24.79 3.54 0.00 2.41
3829 4009 0.537188 CGTGAGCCTGGGTCTACAAT 59.463 55.000 24.79 0.00 0.00 2.71
3830 4010 1.740380 CGTGAGCCTGGGTCTACAATG 60.740 57.143 24.79 7.94 0.00 2.82
3831 4011 0.911769 TGAGCCTGGGTCTACAATGG 59.088 55.000 24.79 0.00 0.00 3.16
3832 4012 1.204146 GAGCCTGGGTCTACAATGGA 58.796 55.000 18.30 0.00 0.00 3.41
3833 4013 1.559682 GAGCCTGGGTCTACAATGGAA 59.440 52.381 18.30 0.00 0.00 3.53
3834 4014 1.992557 AGCCTGGGTCTACAATGGAAA 59.007 47.619 0.00 0.00 0.00 3.13
3835 4015 2.582636 AGCCTGGGTCTACAATGGAAAT 59.417 45.455 0.00 0.00 0.00 2.17
3836 4016 2.952310 GCCTGGGTCTACAATGGAAATC 59.048 50.000 0.00 0.00 0.00 2.17
3837 4017 3.624707 GCCTGGGTCTACAATGGAAATCA 60.625 47.826 0.00 0.00 0.00 2.57
3838 4018 4.796606 CCTGGGTCTACAATGGAAATCAT 58.203 43.478 0.00 0.00 37.79 2.45
3839 4019 4.581824 CCTGGGTCTACAATGGAAATCATG 59.418 45.833 0.00 0.00 35.99 3.07
3840 4020 5.191727 TGGGTCTACAATGGAAATCATGT 57.808 39.130 0.00 0.00 35.99 3.21
3841 4021 4.949238 TGGGTCTACAATGGAAATCATGTG 59.051 41.667 0.00 0.00 35.99 3.21
3842 4022 4.949856 GGGTCTACAATGGAAATCATGTGT 59.050 41.667 0.00 0.00 35.99 3.72
3843 4023 6.119536 GGGTCTACAATGGAAATCATGTGTA 58.880 40.000 0.00 0.00 35.99 2.90
3844 4024 6.601613 GGGTCTACAATGGAAATCATGTGTAA 59.398 38.462 0.00 0.00 35.99 2.41
3845 4025 7.415206 GGGTCTACAATGGAAATCATGTGTAAC 60.415 40.741 0.00 0.00 35.99 2.50
3846 4026 7.336931 GGTCTACAATGGAAATCATGTGTAACT 59.663 37.037 0.00 0.00 38.04 2.24
3847 4027 8.391106 GTCTACAATGGAAATCATGTGTAACTC 58.609 37.037 0.00 0.00 38.04 3.01
3848 4028 6.182039 ACAATGGAAATCATGTGTAACTCG 57.818 37.500 0.00 0.00 38.04 4.18
3849 4029 5.123820 ACAATGGAAATCATGTGTAACTCGG 59.876 40.000 0.00 0.00 38.04 4.63
3850 4030 3.605634 TGGAAATCATGTGTAACTCGGG 58.394 45.455 0.00 0.00 38.04 5.14
3851 4031 2.354821 GGAAATCATGTGTAACTCGGGC 59.645 50.000 0.00 0.00 38.04 6.13
3852 4032 2.779755 AATCATGTGTAACTCGGGCA 57.220 45.000 0.00 0.00 38.04 5.36
3853 4033 2.315925 ATCATGTGTAACTCGGGCAG 57.684 50.000 0.00 0.00 38.04 4.85
3854 4034 1.262417 TCATGTGTAACTCGGGCAGA 58.738 50.000 0.00 0.00 38.04 4.26
3855 4035 1.831106 TCATGTGTAACTCGGGCAGAT 59.169 47.619 0.00 0.00 38.04 2.90
3856 4036 2.236146 TCATGTGTAACTCGGGCAGATT 59.764 45.455 0.00 0.00 38.04 2.40
3857 4037 2.093306 TGTGTAACTCGGGCAGATTG 57.907 50.000 0.00 0.00 38.04 2.67
3858 4038 0.727398 GTGTAACTCGGGCAGATTGC 59.273 55.000 0.00 0.00 44.08 3.56
3871 4051 3.966154 GCAGATTGCCAATCAGATCAAG 58.034 45.455 19.04 2.04 40.42 3.02
3872 4052 3.243434 GCAGATTGCCAATCAGATCAAGG 60.243 47.826 19.04 0.48 40.42 3.61
3873 4053 2.957006 AGATTGCCAATCAGATCAAGGC 59.043 45.455 19.04 12.43 45.41 4.35
3875 4055 2.785868 GCCAATCAGATCAAGGCGT 58.214 52.632 5.90 0.00 35.42 5.68
3876 4056 0.659957 GCCAATCAGATCAAGGCGTC 59.340 55.000 5.90 0.00 35.42 5.19
3877 4057 1.745141 GCCAATCAGATCAAGGCGTCT 60.745 52.381 5.90 0.00 35.42 4.18
3878 4058 2.208431 CCAATCAGATCAAGGCGTCTC 58.792 52.381 0.00 0.00 0.00 3.36
3879 4059 1.857217 CAATCAGATCAAGGCGTCTCG 59.143 52.381 0.00 0.00 0.00 4.04
3880 4060 1.107114 ATCAGATCAAGGCGTCTCGT 58.893 50.000 0.00 0.00 0.00 4.18
3881 4061 0.888619 TCAGATCAAGGCGTCTCGTT 59.111 50.000 0.00 0.00 0.00 3.85
3882 4062 1.135373 TCAGATCAAGGCGTCTCGTTC 60.135 52.381 0.00 0.00 0.00 3.95
3883 4063 0.179161 AGATCAAGGCGTCTCGTTCG 60.179 55.000 0.00 0.00 0.00 3.95
3884 4064 1.140407 GATCAAGGCGTCTCGTTCGG 61.140 60.000 0.00 0.00 0.00 4.30
3891 4071 3.039588 GTCTCGTTCGGCCGCAAA 61.040 61.111 23.51 7.95 0.00 3.68
3892 4072 2.736995 TCTCGTTCGGCCGCAAAG 60.737 61.111 23.51 17.37 0.00 2.77
3893 4073 4.445545 CTCGTTCGGCCGCAAAGC 62.446 66.667 23.51 4.40 0.00 3.51
3904 4084 4.043200 GCAAAGCCCCACGAGCAC 62.043 66.667 0.00 0.00 0.00 4.40
3905 4085 3.726517 CAAAGCCCCACGAGCACG 61.727 66.667 0.76 0.76 45.75 5.34
3910 4090 3.499737 CCCCACGAGCACGCAATC 61.500 66.667 2.62 0.00 43.96 2.67
3911 4091 2.741985 CCCACGAGCACGCAATCA 60.742 61.111 2.62 0.00 43.96 2.57
3912 4092 2.743752 CCCACGAGCACGCAATCAG 61.744 63.158 2.62 0.00 43.96 2.90
3913 4093 2.029288 CCACGAGCACGCAATCAGT 61.029 57.895 2.62 0.00 43.96 3.41
3914 4094 0.735978 CCACGAGCACGCAATCAGTA 60.736 55.000 2.62 0.00 43.96 2.74
3915 4095 1.067693 CACGAGCACGCAATCAGTAA 58.932 50.000 2.62 0.00 43.96 2.24
3916 4096 1.059692 CACGAGCACGCAATCAGTAAG 59.940 52.381 2.62 0.00 43.96 2.34
3917 4097 0.647410 CGAGCACGCAATCAGTAAGG 59.353 55.000 0.00 0.00 0.00 2.69
3918 4098 0.375106 GAGCACGCAATCAGTAAGGC 59.625 55.000 0.00 0.00 0.00 4.35
3919 4099 0.321564 AGCACGCAATCAGTAAGGCA 60.322 50.000 0.00 0.00 0.00 4.75
3920 4100 0.179189 GCACGCAATCAGTAAGGCAC 60.179 55.000 0.00 0.00 0.00 5.01
3921 4101 1.155889 CACGCAATCAGTAAGGCACA 58.844 50.000 0.00 0.00 0.00 4.57
3922 4102 1.535028 CACGCAATCAGTAAGGCACAA 59.465 47.619 0.00 0.00 0.00 3.33
3923 4103 1.535462 ACGCAATCAGTAAGGCACAAC 59.465 47.619 0.00 0.00 0.00 3.32
3924 4104 1.135689 CGCAATCAGTAAGGCACAACC 60.136 52.381 0.00 0.00 39.61 3.77
3933 4113 3.050275 GGCACAACCTCTGTCCGC 61.050 66.667 0.00 0.00 35.47 5.54
3934 4114 3.050275 GCACAACCTCTGTCCGCC 61.050 66.667 0.00 0.00 35.47 6.13
3935 4115 2.743718 CACAACCTCTGTCCGCCT 59.256 61.111 0.00 0.00 35.47 5.52
3936 4116 1.374758 CACAACCTCTGTCCGCCTC 60.375 63.158 0.00 0.00 35.47 4.70
3937 4117 2.266055 CAACCTCTGTCCGCCTCC 59.734 66.667 0.00 0.00 0.00 4.30
3938 4118 2.203788 AACCTCTGTCCGCCTCCA 60.204 61.111 0.00 0.00 0.00 3.86
3939 4119 2.286523 AACCTCTGTCCGCCTCCAG 61.287 63.158 0.00 0.00 0.00 3.86
3940 4120 2.681778 CCTCTGTCCGCCTCCAGT 60.682 66.667 0.00 0.00 0.00 4.00
3941 4121 2.286523 CCTCTGTCCGCCTCCAGTT 61.287 63.158 0.00 0.00 0.00 3.16
3942 4122 1.216710 CTCTGTCCGCCTCCAGTTC 59.783 63.158 0.00 0.00 0.00 3.01
3943 4123 2.232298 CTCTGTCCGCCTCCAGTTCC 62.232 65.000 0.00 0.00 0.00 3.62
3944 4124 2.525629 TGTCCGCCTCCAGTTCCA 60.526 61.111 0.00 0.00 0.00 3.53
3945 4125 2.047179 GTCCGCCTCCAGTTCCAC 60.047 66.667 0.00 0.00 0.00 4.02
3946 4126 2.203788 TCCGCCTCCAGTTCCACT 60.204 61.111 0.00 0.00 0.00 4.00
3947 4127 1.841556 TCCGCCTCCAGTTCCACTT 60.842 57.895 0.00 0.00 0.00 3.16
3948 4128 1.376037 CCGCCTCCAGTTCCACTTC 60.376 63.158 0.00 0.00 0.00 3.01
3949 4129 1.371183 CGCCTCCAGTTCCACTTCA 59.629 57.895 0.00 0.00 0.00 3.02
3950 4130 0.250295 CGCCTCCAGTTCCACTTCAA 60.250 55.000 0.00 0.00 0.00 2.69
3951 4131 1.528129 GCCTCCAGTTCCACTTCAAG 58.472 55.000 0.00 0.00 0.00 3.02
3952 4132 1.884067 GCCTCCAGTTCCACTTCAAGG 60.884 57.143 0.00 0.00 0.00 3.61
3953 4133 1.699634 CCTCCAGTTCCACTTCAAGGA 59.300 52.381 0.00 0.00 0.00 3.36
3954 4134 2.289945 CCTCCAGTTCCACTTCAAGGAG 60.290 54.545 0.00 0.00 40.58 3.69
3955 4135 1.699634 TCCAGTTCCACTTCAAGGAGG 59.300 52.381 0.00 0.00 36.33 4.30
3956 4136 1.528129 CAGTTCCACTTCAAGGAGGC 58.472 55.000 0.00 0.00 36.33 4.70
3957 4137 1.140312 AGTTCCACTTCAAGGAGGCA 58.860 50.000 0.00 0.00 36.33 4.75
3958 4138 1.494721 AGTTCCACTTCAAGGAGGCAA 59.505 47.619 0.00 0.00 36.33 4.52
3959 4139 2.091885 AGTTCCACTTCAAGGAGGCAAA 60.092 45.455 0.00 0.00 36.33 3.68
3960 4140 2.276732 TCCACTTCAAGGAGGCAAAG 57.723 50.000 0.00 0.00 0.00 2.77
3961 4141 1.494721 TCCACTTCAAGGAGGCAAAGT 59.505 47.619 0.00 0.00 32.34 2.66
3962 4142 2.091885 TCCACTTCAAGGAGGCAAAGTT 60.092 45.455 0.00 0.00 29.78 2.66
3963 4143 2.035066 CCACTTCAAGGAGGCAAAGTTG 59.965 50.000 0.00 0.00 29.78 3.16
3974 4154 3.845625 CAAAGTTGCCCGAGTTGTC 57.154 52.632 0.00 0.00 0.00 3.18
3975 4155 1.021202 CAAAGTTGCCCGAGTTGTCA 58.979 50.000 0.00 0.00 0.00 3.58
3976 4156 1.002468 CAAAGTTGCCCGAGTTGTCAG 60.002 52.381 0.00 0.00 0.00 3.51
3977 4157 0.468226 AAGTTGCCCGAGTTGTCAGA 59.532 50.000 0.00 0.00 0.00 3.27
3978 4158 0.249911 AGTTGCCCGAGTTGTCAGAC 60.250 55.000 0.00 0.00 0.00 3.51
3979 4159 1.300620 TTGCCCGAGTTGTCAGACG 60.301 57.895 0.00 0.00 0.00 4.18
3980 4160 2.432628 GCCCGAGTTGTCAGACGG 60.433 66.667 0.00 0.00 44.16 4.79
3981 4161 2.927580 GCCCGAGTTGTCAGACGGA 61.928 63.158 13.38 0.00 46.94 4.69
3982 4162 1.663739 CCCGAGTTGTCAGACGGAA 59.336 57.895 13.38 0.00 46.94 4.30
3983 4163 0.032952 CCCGAGTTGTCAGACGGAAA 59.967 55.000 13.38 0.00 46.94 3.13
3984 4164 1.539496 CCCGAGTTGTCAGACGGAAAA 60.539 52.381 13.38 0.00 46.94 2.29
3985 4165 1.792949 CCGAGTTGTCAGACGGAAAAG 59.207 52.381 0.00 0.00 46.94 2.27
3986 4166 2.545113 CCGAGTTGTCAGACGGAAAAGA 60.545 50.000 0.00 0.00 46.94 2.52
3987 4167 2.471743 CGAGTTGTCAGACGGAAAAGAC 59.528 50.000 0.00 0.00 0.00 3.01
3988 4168 3.454375 GAGTTGTCAGACGGAAAAGACA 58.546 45.455 0.00 0.00 39.06 3.41
3989 4169 4.058817 GAGTTGTCAGACGGAAAAGACAT 58.941 43.478 0.00 0.00 40.32 3.06
3990 4170 3.809832 AGTTGTCAGACGGAAAAGACATG 59.190 43.478 0.00 0.00 40.32 3.21
3991 4171 2.766313 TGTCAGACGGAAAAGACATGG 58.234 47.619 0.00 0.00 36.20 3.66
3992 4172 2.367241 TGTCAGACGGAAAAGACATGGA 59.633 45.455 0.00 0.00 36.20 3.41
3993 4173 2.737252 GTCAGACGGAAAAGACATGGAC 59.263 50.000 0.00 0.00 0.00 4.02
3994 4174 2.367241 TCAGACGGAAAAGACATGGACA 59.633 45.455 0.00 0.00 0.00 4.02
3995 4175 3.138304 CAGACGGAAAAGACATGGACAA 58.862 45.455 0.00 0.00 0.00 3.18
3996 4176 3.058914 CAGACGGAAAAGACATGGACAAC 60.059 47.826 0.00 0.00 0.00 3.32
3997 4177 2.225727 GACGGAAAAGACATGGACAACC 59.774 50.000 0.00 0.00 0.00 3.77
3998 4178 2.158667 ACGGAAAAGACATGGACAACCT 60.159 45.455 0.00 0.00 37.04 3.50
3999 4179 2.226437 CGGAAAAGACATGGACAACCTG 59.774 50.000 0.00 0.00 37.04 4.00
4000 4180 2.029918 GGAAAAGACATGGACAACCTGC 60.030 50.000 0.00 0.00 37.04 4.85
4001 4181 2.363306 AAAGACATGGACAACCTGCA 57.637 45.000 0.00 0.00 37.04 4.41
4002 4182 2.363306 AAGACATGGACAACCTGCAA 57.637 45.000 0.00 0.00 37.04 4.08
4003 4183 1.609208 AGACATGGACAACCTGCAAC 58.391 50.000 0.00 0.00 37.04 4.17
4004 4184 0.238289 GACATGGACAACCTGCAACG 59.762 55.000 0.00 0.00 37.04 4.10
4005 4185 1.172180 ACATGGACAACCTGCAACGG 61.172 55.000 0.00 0.00 37.04 4.44
4006 4186 2.268076 ATGGACAACCTGCAACGGC 61.268 57.895 0.00 0.00 41.68 5.68
4007 4187 4.025401 GGACAACCTGCAACGGCG 62.025 66.667 4.80 4.80 45.35 6.46
4008 4188 4.683334 GACAACCTGCAACGGCGC 62.683 66.667 6.90 0.00 45.35 6.53
4010 4190 4.980903 CAACCTGCAACGGCGCAC 62.981 66.667 10.83 0.00 45.35 5.34
4034 4214 3.825143 CCCAAGGCATTTCCTATTTGG 57.175 47.619 0.00 0.00 46.94 3.28
4035 4215 2.158914 CCCAAGGCATTTCCTATTTGGC 60.159 50.000 0.00 0.00 46.94 4.52
4036 4216 2.481795 CCAAGGCATTTCCTATTTGGCG 60.482 50.000 0.00 0.00 46.94 5.69
4037 4217 2.143876 AGGCATTTCCTATTTGGCGT 57.856 45.000 0.00 0.00 45.41 5.68
4038 4218 2.456577 AGGCATTTCCTATTTGGCGTT 58.543 42.857 0.00 0.00 45.41 4.84
4039 4219 2.166254 AGGCATTTCCTATTTGGCGTTG 59.834 45.455 0.00 0.00 45.41 4.10
4040 4220 1.926510 GCATTTCCTATTTGGCGTTGC 59.073 47.619 0.00 0.00 35.26 4.17
4041 4221 2.673610 GCATTTCCTATTTGGCGTTGCA 60.674 45.455 0.00 0.00 35.20 4.08
4042 4222 3.181397 CATTTCCTATTTGGCGTTGCAG 58.819 45.455 0.00 0.00 35.26 4.41
4043 4223 1.173043 TTCCTATTTGGCGTTGCAGG 58.827 50.000 0.00 0.00 35.26 4.85
4044 4224 1.139520 CCTATTTGGCGTTGCAGGC 59.860 57.895 3.41 3.41 37.19 4.85
4045 4225 1.226379 CTATTTGGCGTTGCAGGCG 60.226 57.895 8.16 8.16 39.82 5.52
4066 4246 4.907457 GGTGCATACCCCATCCTG 57.093 61.111 0.00 0.00 41.36 3.86
4067 4247 1.529244 GGTGCATACCCCATCCTGC 60.529 63.158 0.00 0.00 41.36 4.85
4068 4248 1.893808 GTGCATACCCCATCCTGCG 60.894 63.158 0.00 0.00 37.44 5.18
4069 4249 2.069430 TGCATACCCCATCCTGCGA 61.069 57.895 0.00 0.00 37.44 5.10
4070 4250 1.302033 GCATACCCCATCCTGCGAG 60.302 63.158 0.00 0.00 0.00 5.03
4071 4251 1.302033 CATACCCCATCCTGCGAGC 60.302 63.158 0.00 0.00 0.00 5.03
4072 4252 1.460305 ATACCCCATCCTGCGAGCT 60.460 57.895 0.00 0.00 0.00 4.09
4073 4253 1.762522 ATACCCCATCCTGCGAGCTG 61.763 60.000 0.00 0.00 0.00 4.24
4074 4254 4.559063 CCCCATCCTGCGAGCTGG 62.559 72.222 13.85 13.85 36.53 4.85
4075 4255 4.559063 CCCATCCTGCGAGCTGGG 62.559 72.222 18.66 12.40 42.29 4.45
4077 4257 4.172512 CATCCTGCGAGCTGGGCT 62.173 66.667 18.66 6.25 43.88 5.19
4078 4258 2.444706 ATCCTGCGAGCTGGGCTA 60.445 61.111 18.66 2.76 39.88 3.93
4079 4259 2.506061 ATCCTGCGAGCTGGGCTAG 61.506 63.158 18.66 0.00 39.88 3.42
4095 4275 4.092116 GGCTAGCCCATCTATCTTTTGT 57.908 45.455 24.19 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 5.220796 GGCTACTAGAACGCAAATTTTAGGG 60.221 44.000 0.00 0.00 0.00 3.53
60 61 2.827322 TGGTTTAGGCTACTAGAACGCA 59.173 45.455 0.00 0.00 0.00 5.24
61 62 3.119209 AGTGGTTTAGGCTACTAGAACGC 60.119 47.826 0.00 0.00 33.10 4.84
188 189 1.290009 GCACCAATGCCAAGTCACC 59.710 57.895 0.00 0.00 46.97 4.02
232 233 3.251004 ACTGAATGAACTTCACCGAAAGC 59.749 43.478 0.00 0.00 38.97 3.51
283 284 4.202172 TGGTTAACGAAGTCATCACAGACA 60.202 41.667 0.00 0.00 45.00 3.41
301 302 3.275143 CCGGCACAACATCTTATGGTTA 58.725 45.455 0.00 0.00 33.60 2.85
306 307 1.065491 TGAGCCGGCACAACATCTTAT 60.065 47.619 31.54 1.71 0.00 1.73
346 347 3.981308 GCACAACGCACACCCTAT 58.019 55.556 0.00 0.00 41.79 2.57
373 375 4.919168 TCACATACAAGCACGTACACTTAC 59.081 41.667 0.00 0.00 0.00 2.34
382 384 6.438763 TCATAGATACTCACATACAAGCACG 58.561 40.000 0.00 0.00 0.00 5.34
427 429 1.078708 GTCCGAAAAGGCCATCCGA 60.079 57.895 5.01 0.00 40.77 4.55
443 445 5.040635 TGCATTCCGTTCTTTTTCTTTGTC 58.959 37.500 0.00 0.00 0.00 3.18
444 446 4.803613 GTGCATTCCGTTCTTTTTCTTTGT 59.196 37.500 0.00 0.00 0.00 2.83
455 457 1.066858 TCTCTCTGGTGCATTCCGTTC 60.067 52.381 0.00 0.00 0.00 3.95
459 461 1.307097 GCATCTCTCTGGTGCATTCC 58.693 55.000 0.00 0.00 38.68 3.01
492 494 2.472488 GAGTCAAACTGGCAAAAATGCG 59.528 45.455 0.00 0.00 35.24 4.73
516 518 8.649841 GCAAACGTATTACAAAGAGTACACATA 58.350 33.333 0.00 0.00 30.91 2.29
665 668 9.804667 CATGGTGCATGAGTTGTGTGTACAAAT 62.805 40.741 0.00 0.00 46.62 2.32
666 669 8.602006 CATGGTGCATGAGTTGTGTGTACAAA 62.602 42.308 0.00 0.00 44.47 2.83
667 670 2.616376 GGTGCATGAGTTGTGTGTACAA 59.384 45.455 0.00 0.00 44.17 2.41
668 671 2.217750 GGTGCATGAGTTGTGTGTACA 58.782 47.619 0.00 0.00 31.30 2.90
669 672 2.217750 TGGTGCATGAGTTGTGTGTAC 58.782 47.619 0.00 0.00 0.00 2.90
670 673 2.629336 TGGTGCATGAGTTGTGTGTA 57.371 45.000 0.00 0.00 0.00 2.90
671 674 1.610038 CATGGTGCATGAGTTGTGTGT 59.390 47.619 0.00 0.00 43.81 3.72
672 675 1.068125 CCATGGTGCATGAGTTGTGTG 60.068 52.381 2.57 0.00 43.81 3.82
673 676 1.250328 CCATGGTGCATGAGTTGTGT 58.750 50.000 2.57 0.00 43.81 3.72
674 677 0.108992 GCCATGGTGCATGAGTTGTG 60.109 55.000 14.67 0.00 43.81 3.33
675 678 0.540133 TGCCATGGTGCATGAGTTGT 60.540 50.000 14.67 0.00 43.81 3.32
742 745 3.121030 GCGCTCGAACCATGCACT 61.121 61.111 0.00 0.00 0.00 4.40
743 746 4.166011 GGCGCTCGAACCATGCAC 62.166 66.667 7.64 0.00 0.00 4.57
767 771 4.876107 AGCGATATCTTTCCATTTCACGTT 59.124 37.500 0.34 0.00 0.00 3.99
788 792 1.514678 TTCCATGCGTGGTGAACAGC 61.515 55.000 24.24 0.00 46.16 4.40
869 873 4.403734 AGAAAGAAATAAGCCCGGTTTGA 58.596 39.130 0.00 0.00 0.00 2.69
943 947 8.370940 CAGATGAGAAAGTAAGGGCTAATGATA 58.629 37.037 0.00 0.00 0.00 2.15
945 949 6.156949 ACAGATGAGAAAGTAAGGGCTAATGA 59.843 38.462 0.00 0.00 0.00 2.57
988 992 4.636249 AGCTTCTTCATGTCTCTTCGTTT 58.364 39.130 0.00 0.00 0.00 3.60
989 993 4.241681 GAGCTTCTTCATGTCTCTTCGTT 58.758 43.478 0.00 0.00 0.00 3.85
1063 1068 2.758979 GAGATGTCTCGGGTGTAAAGGA 59.241 50.000 0.00 0.00 32.78 3.36
1095 1100 2.034048 TAACCACCGTCTGTGCAGCA 62.034 55.000 0.00 0.00 44.01 4.41
1105 1110 2.867975 CGAAGACACTTTTAACCACCGT 59.132 45.455 0.00 0.00 0.00 4.83
1134 1139 3.991536 GAAGTCGCCTCGGCCAGTC 62.992 68.421 2.24 0.00 37.98 3.51
1498 1548 2.112198 GTCGCGGGCCATGAAATCA 61.112 57.895 6.13 0.00 0.00 2.57
1718 1768 0.473755 TCCCAGCCATATCGCACAAT 59.526 50.000 0.00 0.00 0.00 2.71
1749 1799 1.086696 CCGCCGATGACACAATTCTT 58.913 50.000 0.00 0.00 0.00 2.52
1871 1994 0.518969 CATGCATGCGTACACACACG 60.519 55.000 14.93 0.00 44.71 4.49
1961 2089 1.990799 TGCGGTATCGTCTTTGTCAG 58.009 50.000 0.00 0.00 38.89 3.51
2157 2285 5.072055 TCAGAAGCACAAAATCCATTCTCA 58.928 37.500 0.00 0.00 0.00 3.27
2357 2516 4.193090 TGTGTCGCTTGGAAGAAACTAAA 58.807 39.130 0.00 0.00 0.00 1.85
2422 2582 3.260884 CCTTAGTTTACAGAGGGAGCACA 59.739 47.826 0.00 0.00 0.00 4.57
2441 2601 3.168035 TCAACCATTGTACATGCCCTT 57.832 42.857 0.00 0.00 0.00 3.95
2442 2602 2.897271 TCAACCATTGTACATGCCCT 57.103 45.000 0.00 0.00 0.00 5.19
2443 2603 4.887071 TCTTATCAACCATTGTACATGCCC 59.113 41.667 0.00 0.00 0.00 5.36
2444 2604 6.639632 ATCTTATCAACCATTGTACATGCC 57.360 37.500 0.00 0.00 0.00 4.40
2445 2605 8.383318 ACTATCTTATCAACCATTGTACATGC 57.617 34.615 0.00 0.00 0.00 4.06
2446 2606 9.770097 AGACTATCTTATCAACCATTGTACATG 57.230 33.333 0.00 0.00 0.00 3.21
2508 2668 6.784031 AGATGACCCATTGTAGACTCTTTTT 58.216 36.000 0.00 0.00 0.00 1.94
2509 2669 6.214412 AGAGATGACCCATTGTAGACTCTTTT 59.786 38.462 0.00 0.00 30.66 2.27
2510 2670 5.723887 AGAGATGACCCATTGTAGACTCTTT 59.276 40.000 0.00 0.00 30.66 2.52
2511 2671 5.276440 AGAGATGACCCATTGTAGACTCTT 58.724 41.667 0.00 0.00 30.66 2.85
2512 2672 4.877773 AGAGATGACCCATTGTAGACTCT 58.122 43.478 0.00 0.00 0.00 3.24
2513 2673 5.606348 AAGAGATGACCCATTGTAGACTC 57.394 43.478 0.00 0.00 0.00 3.36
2514 2674 5.069781 GCTAAGAGATGACCCATTGTAGACT 59.930 44.000 0.00 0.00 0.00 3.24
2515 2675 5.293560 GCTAAGAGATGACCCATTGTAGAC 58.706 45.833 0.00 0.00 0.00 2.59
2516 2676 4.345257 GGCTAAGAGATGACCCATTGTAGA 59.655 45.833 0.00 0.00 0.00 2.59
2517 2677 4.346418 AGGCTAAGAGATGACCCATTGTAG 59.654 45.833 0.00 0.00 0.00 2.74
2518 2678 4.298626 AGGCTAAGAGATGACCCATTGTA 58.701 43.478 0.00 0.00 0.00 2.41
2519 2679 3.118531 AGGCTAAGAGATGACCCATTGT 58.881 45.455 0.00 0.00 0.00 2.71
2520 2680 3.853355 AGGCTAAGAGATGACCCATTG 57.147 47.619 0.00 0.00 0.00 2.82
2521 2681 5.608437 TGATAAGGCTAAGAGATGACCCATT 59.392 40.000 0.00 0.00 0.00 3.16
2522 2682 5.158141 TGATAAGGCTAAGAGATGACCCAT 58.842 41.667 0.00 0.00 0.00 4.00
2523 2683 4.556697 TGATAAGGCTAAGAGATGACCCA 58.443 43.478 0.00 0.00 0.00 4.51
2524 2684 5.247110 TGATGATAAGGCTAAGAGATGACCC 59.753 44.000 0.00 0.00 0.00 4.46
2525 2685 6.352016 TGATGATAAGGCTAAGAGATGACC 57.648 41.667 0.00 0.00 0.00 4.02
2526 2686 9.935241 TTATTGATGATAAGGCTAAGAGATGAC 57.065 33.333 0.00 0.00 0.00 3.06
2527 2687 9.935241 GTTATTGATGATAAGGCTAAGAGATGA 57.065 33.333 0.00 0.00 31.01 2.92
2528 2688 9.941325 AGTTATTGATGATAAGGCTAAGAGATG 57.059 33.333 0.00 0.00 31.01 2.90
2531 2691 9.364989 GCTAGTTATTGATGATAAGGCTAAGAG 57.635 37.037 0.00 0.00 31.01 2.85
2532 2692 8.870116 TGCTAGTTATTGATGATAAGGCTAAGA 58.130 33.333 0.00 0.00 31.01 2.10
2533 2693 9.494271 TTGCTAGTTATTGATGATAAGGCTAAG 57.506 33.333 0.00 0.00 31.01 2.18
2536 2696 8.930846 AATTGCTAGTTATTGATGATAAGGCT 57.069 30.769 0.00 0.00 31.01 4.58
2537 2697 9.617975 GAAATTGCTAGTTATTGATGATAAGGC 57.382 33.333 0.00 0.00 31.01 4.35
2549 2709 9.686683 ACCATGTCTTTAGAAATTGCTAGTTAT 57.313 29.630 0.00 0.00 0.00 1.89
2550 2710 8.946085 CACCATGTCTTTAGAAATTGCTAGTTA 58.054 33.333 0.00 0.00 0.00 2.24
2551 2711 7.665559 TCACCATGTCTTTAGAAATTGCTAGTT 59.334 33.333 0.00 0.00 0.00 2.24
2552 2712 7.168219 TCACCATGTCTTTAGAAATTGCTAGT 58.832 34.615 0.00 0.00 0.00 2.57
2553 2713 7.550551 TCTCACCATGTCTTTAGAAATTGCTAG 59.449 37.037 0.00 0.00 0.00 3.42
2554 2714 7.334421 GTCTCACCATGTCTTTAGAAATTGCTA 59.666 37.037 0.00 0.00 0.00 3.49
2555 2715 6.150140 GTCTCACCATGTCTTTAGAAATTGCT 59.850 38.462 0.00 0.00 0.00 3.91
2556 2716 6.072508 TGTCTCACCATGTCTTTAGAAATTGC 60.073 38.462 0.00 0.00 0.00 3.56
2557 2717 7.439157 TGTCTCACCATGTCTTTAGAAATTG 57.561 36.000 0.00 0.00 0.00 2.32
2558 2718 9.911788 ATATGTCTCACCATGTCTTTAGAAATT 57.088 29.630 0.00 0.00 0.00 1.82
2559 2719 9.911788 AATATGTCTCACCATGTCTTTAGAAAT 57.088 29.630 0.00 0.00 0.00 2.17
2560 2720 9.166173 CAATATGTCTCACCATGTCTTTAGAAA 57.834 33.333 0.00 0.00 0.00 2.52
2561 2721 8.321353 ACAATATGTCTCACCATGTCTTTAGAA 58.679 33.333 0.00 0.00 0.00 2.10
2562 2722 7.765819 CACAATATGTCTCACCATGTCTTTAGA 59.234 37.037 0.00 0.00 0.00 2.10
2563 2723 7.466455 GCACAATATGTCTCACCATGTCTTTAG 60.466 40.741 0.00 0.00 0.00 1.85
2564 2724 6.316140 GCACAATATGTCTCACCATGTCTTTA 59.684 38.462 0.00 0.00 0.00 1.85
2565 2725 5.124457 GCACAATATGTCTCACCATGTCTTT 59.876 40.000 0.00 0.00 0.00 2.52
2566 2726 4.637534 GCACAATATGTCTCACCATGTCTT 59.362 41.667 0.00 0.00 0.00 3.01
2567 2727 4.080695 AGCACAATATGTCTCACCATGTCT 60.081 41.667 0.00 0.00 0.00 3.41
2568 2728 4.194640 AGCACAATATGTCTCACCATGTC 58.805 43.478 0.00 0.00 0.00 3.06
2569 2729 4.226427 AGCACAATATGTCTCACCATGT 57.774 40.909 0.00 0.00 0.00 3.21
2570 2730 6.682423 TTTAGCACAATATGTCTCACCATG 57.318 37.500 0.00 0.00 0.00 3.66
2571 2731 7.112122 TCTTTTAGCACAATATGTCTCACCAT 58.888 34.615 0.00 0.00 0.00 3.55
2572 2732 6.472016 TCTTTTAGCACAATATGTCTCACCA 58.528 36.000 0.00 0.00 0.00 4.17
2573 2733 6.985188 TCTTTTAGCACAATATGTCTCACC 57.015 37.500 0.00 0.00 0.00 4.02
2574 2734 8.201554 TGATCTTTTAGCACAATATGTCTCAC 57.798 34.615 0.00 0.00 0.00 3.51
2575 2735 8.969260 ATGATCTTTTAGCACAATATGTCTCA 57.031 30.769 0.00 0.00 0.00 3.27
2576 2736 9.270640 AGATGATCTTTTAGCACAATATGTCTC 57.729 33.333 0.00 0.00 0.00 3.36
2577 2737 9.270640 GAGATGATCTTTTAGCACAATATGTCT 57.729 33.333 0.00 0.00 0.00 3.41
2578 2738 9.270640 AGAGATGATCTTTTAGCACAATATGTC 57.729 33.333 0.00 0.00 32.99 3.06
2579 2739 9.624373 AAGAGATGATCTTTTAGCACAATATGT 57.376 29.630 0.00 0.00 46.49 2.29
2580 2740 9.880064 CAAGAGATGATCTTTTAGCACAATATG 57.120 33.333 0.00 0.00 46.49 1.78
2581 2741 9.624373 ACAAGAGATGATCTTTTAGCACAATAT 57.376 29.630 0.00 0.00 46.49 1.28
2582 2742 9.102757 GACAAGAGATGATCTTTTAGCACAATA 57.897 33.333 0.00 0.00 46.49 1.90
2583 2743 7.828223 AGACAAGAGATGATCTTTTAGCACAAT 59.172 33.333 0.00 0.00 46.49 2.71
2584 2744 7.164122 AGACAAGAGATGATCTTTTAGCACAA 58.836 34.615 0.00 0.00 46.49 3.33
2585 2745 6.705302 AGACAAGAGATGATCTTTTAGCACA 58.295 36.000 0.00 0.00 46.49 4.57
2586 2746 7.548780 AGAAGACAAGAGATGATCTTTTAGCAC 59.451 37.037 0.00 0.00 46.49 4.40
2587 2747 7.619050 AGAAGACAAGAGATGATCTTTTAGCA 58.381 34.615 0.00 0.00 46.49 3.49
2588 2748 7.981225 AGAGAAGACAAGAGATGATCTTTTAGC 59.019 37.037 0.00 0.00 46.49 3.09
2589 2749 9.874205 AAGAGAAGACAAGAGATGATCTTTTAG 57.126 33.333 0.00 0.00 46.49 1.85
2612 2772 9.574516 AAAAGGCTTGTCTTCTCTTATTTAAGA 57.425 29.630 0.00 0.44 39.82 2.10
2613 2773 9.833182 GAAAAGGCTTGTCTTCTCTTATTTAAG 57.167 33.333 10.26 0.00 34.65 1.85
2614 2774 9.574516 AGAAAAGGCTTGTCTTCTCTTATTTAA 57.425 29.630 14.33 0.00 0.00 1.52
2615 2775 9.574516 AAGAAAAGGCTTGTCTTCTCTTATTTA 57.425 29.630 23.96 0.00 33.68 1.40
2616 2776 8.470657 AAGAAAAGGCTTGTCTTCTCTTATTT 57.529 30.769 23.96 2.07 33.68 1.40
2617 2777 9.746457 ATAAGAAAAGGCTTGTCTTCTCTTATT 57.254 29.630 30.86 11.70 40.94 1.40
2618 2778 9.171877 CATAAGAAAAGGCTTGTCTTCTCTTAT 57.828 33.333 30.86 18.17 42.82 1.73
2619 2779 8.375506 TCATAAGAAAAGGCTTGTCTTCTCTTA 58.624 33.333 30.86 16.85 39.30 2.10
2620 2780 7.227156 TCATAAGAAAAGGCTTGTCTTCTCTT 58.773 34.615 30.86 18.21 37.66 2.85
2621 2781 6.773638 TCATAAGAAAAGGCTTGTCTTCTCT 58.226 36.000 30.86 16.87 33.70 3.10
2622 2782 6.652900 ACTCATAAGAAAAGGCTTGTCTTCTC 59.347 38.462 30.86 8.39 33.70 2.87
2623 2783 6.538263 ACTCATAAGAAAAGGCTTGTCTTCT 58.462 36.000 30.86 21.01 33.70 2.85
2624 2784 6.809630 ACTCATAAGAAAAGGCTTGTCTTC 57.190 37.500 30.86 17.17 33.70 2.87
2625 2785 7.001073 AGAACTCATAAGAAAAGGCTTGTCTT 58.999 34.615 30.04 30.04 35.77 3.01
2626 2786 6.538263 AGAACTCATAAGAAAAGGCTTGTCT 58.462 36.000 14.33 14.33 0.00 3.41
2627 2787 6.652900 AGAGAACTCATAAGAAAAGGCTTGTC 59.347 38.462 9.51 9.51 0.00 3.18
2628 2788 6.538263 AGAGAACTCATAAGAAAAGGCTTGT 58.462 36.000 0.00 0.00 0.00 3.16
2629 2789 6.878389 AGAGAGAACTCATAAGAAAAGGCTTG 59.122 38.462 0.00 0.00 44.79 4.01
2630 2790 7.014988 AGAGAGAACTCATAAGAAAAGGCTT 57.985 36.000 0.00 0.00 44.79 4.35
2631 2791 6.440328 AGAGAGAGAACTCATAAGAAAAGGCT 59.560 38.462 4.64 0.00 44.79 4.58
2632 2792 6.639563 AGAGAGAGAACTCATAAGAAAAGGC 58.360 40.000 4.64 0.00 44.79 4.35
2633 2793 7.763985 GGAAGAGAGAGAACTCATAAGAAAAGG 59.236 40.741 4.64 0.00 44.79 3.11
2634 2794 8.310382 TGGAAGAGAGAGAACTCATAAGAAAAG 58.690 37.037 4.64 0.00 44.79 2.27
2635 2795 8.091449 GTGGAAGAGAGAGAACTCATAAGAAAA 58.909 37.037 4.64 0.00 44.79 2.29
2636 2796 7.310113 GGTGGAAGAGAGAGAACTCATAAGAAA 60.310 40.741 4.64 0.00 44.79 2.52
2637 2797 6.153680 GGTGGAAGAGAGAGAACTCATAAGAA 59.846 42.308 4.64 0.00 44.79 2.52
2638 2798 5.654650 GGTGGAAGAGAGAGAACTCATAAGA 59.345 44.000 4.64 0.00 44.79 2.10
2639 2799 5.656416 AGGTGGAAGAGAGAGAACTCATAAG 59.344 44.000 4.64 0.00 44.79 1.73
2640 2800 5.584913 AGGTGGAAGAGAGAGAACTCATAA 58.415 41.667 4.64 0.00 44.79 1.90
2641 2801 5.197451 GAGGTGGAAGAGAGAGAACTCATA 58.803 45.833 4.64 0.00 44.79 2.15
2642 2802 4.023291 GAGGTGGAAGAGAGAGAACTCAT 58.977 47.826 4.64 0.00 44.79 2.90
2643 2803 3.181428 TGAGGTGGAAGAGAGAGAACTCA 60.181 47.826 4.64 0.00 44.79 3.41
2644 2804 3.426615 TGAGGTGGAAGAGAGAGAACTC 58.573 50.000 0.00 0.00 42.90 3.01
2645 2805 3.534357 TGAGGTGGAAGAGAGAGAACT 57.466 47.619 0.00 0.00 0.00 3.01
2646 2806 3.766591 TGATGAGGTGGAAGAGAGAGAAC 59.233 47.826 0.00 0.00 0.00 3.01
2647 2807 4.053009 TGATGAGGTGGAAGAGAGAGAA 57.947 45.455 0.00 0.00 0.00 2.87
2648 2808 3.746792 TGATGAGGTGGAAGAGAGAGA 57.253 47.619 0.00 0.00 0.00 3.10
2649 2809 5.356291 AAATGATGAGGTGGAAGAGAGAG 57.644 43.478 0.00 0.00 0.00 3.20
2650 2810 6.042552 GGATAAATGATGAGGTGGAAGAGAGA 59.957 42.308 0.00 0.00 0.00 3.10
2651 2811 6.043012 AGGATAAATGATGAGGTGGAAGAGAG 59.957 42.308 0.00 0.00 0.00 3.20
2652 2812 5.907662 AGGATAAATGATGAGGTGGAAGAGA 59.092 40.000 0.00 0.00 0.00 3.10
2653 2813 6.185114 AGGATAAATGATGAGGTGGAAGAG 57.815 41.667 0.00 0.00 0.00 2.85
2654 2814 6.239317 CGTAGGATAAATGATGAGGTGGAAGA 60.239 42.308 0.00 0.00 0.00 2.87
2655 2815 5.928839 CGTAGGATAAATGATGAGGTGGAAG 59.071 44.000 0.00 0.00 0.00 3.46
2656 2816 5.365605 ACGTAGGATAAATGATGAGGTGGAA 59.634 40.000 0.00 0.00 0.00 3.53
2657 2817 4.899457 ACGTAGGATAAATGATGAGGTGGA 59.101 41.667 0.00 0.00 0.00 4.02
2658 2818 4.991056 CACGTAGGATAAATGATGAGGTGG 59.009 45.833 0.00 0.00 0.00 4.61
2659 2819 4.991056 CCACGTAGGATAAATGATGAGGTG 59.009 45.833 0.00 0.00 41.22 4.00
2660 2820 4.503296 GCCACGTAGGATAAATGATGAGGT 60.503 45.833 8.04 0.00 41.22 3.85
2661 2821 3.997021 GCCACGTAGGATAAATGATGAGG 59.003 47.826 8.04 0.00 41.22 3.86
2662 2822 4.449068 GTGCCACGTAGGATAAATGATGAG 59.551 45.833 8.04 0.00 41.22 2.90
2663 2823 4.100963 AGTGCCACGTAGGATAAATGATGA 59.899 41.667 8.04 0.00 41.22 2.92
2664 2824 4.380531 AGTGCCACGTAGGATAAATGATG 58.619 43.478 8.04 0.00 41.22 3.07
2665 2825 4.503296 GGAGTGCCACGTAGGATAAATGAT 60.503 45.833 8.04 0.00 41.22 2.45
2666 2826 3.181469 GGAGTGCCACGTAGGATAAATGA 60.181 47.826 8.04 0.00 41.22 2.57
2667 2827 3.131396 GGAGTGCCACGTAGGATAAATG 58.869 50.000 8.04 0.00 41.22 2.32
2668 2828 3.039011 AGGAGTGCCACGTAGGATAAAT 58.961 45.455 8.04 0.00 41.22 1.40
2669 2829 2.463752 AGGAGTGCCACGTAGGATAAA 58.536 47.619 8.04 0.00 41.22 1.40
2670 2830 2.154567 AGGAGTGCCACGTAGGATAA 57.845 50.000 8.04 0.00 41.22 1.75
2671 2831 3.117776 TCTTAGGAGTGCCACGTAGGATA 60.118 47.826 8.04 0.00 41.22 2.59
2672 2832 2.032620 CTTAGGAGTGCCACGTAGGAT 58.967 52.381 8.04 0.00 41.22 3.24
2673 2833 1.005097 TCTTAGGAGTGCCACGTAGGA 59.995 52.381 8.04 0.00 41.22 2.94
2674 2834 1.471119 TCTTAGGAGTGCCACGTAGG 58.529 55.000 0.00 0.00 41.84 3.18
2675 2835 3.304794 GCTATCTTAGGAGTGCCACGTAG 60.305 52.174 0.00 0.00 36.29 3.51
2676 2836 2.621998 GCTATCTTAGGAGTGCCACGTA 59.378 50.000 0.00 0.00 36.29 3.57
2677 2837 1.409427 GCTATCTTAGGAGTGCCACGT 59.591 52.381 0.00 0.00 36.29 4.49
2678 2838 1.409064 TGCTATCTTAGGAGTGCCACG 59.591 52.381 0.00 0.00 36.29 4.94
2679 2839 2.483889 GGTGCTATCTTAGGAGTGCCAC 60.484 54.545 0.00 0.00 36.29 5.01
2680 2840 1.762957 GGTGCTATCTTAGGAGTGCCA 59.237 52.381 0.00 0.00 36.29 4.92
2681 2841 1.762957 TGGTGCTATCTTAGGAGTGCC 59.237 52.381 0.70 0.00 0.00 5.01
2682 2842 3.760580 ATGGTGCTATCTTAGGAGTGC 57.239 47.619 0.00 0.00 0.00 4.40
2683 2843 5.028549 ACAATGGTGCTATCTTAGGAGTG 57.971 43.478 0.00 0.00 0.00 3.51
2684 2844 5.661312 TGTACAATGGTGCTATCTTAGGAGT 59.339 40.000 0.00 0.00 0.00 3.85
2685 2845 6.161855 TGTACAATGGTGCTATCTTAGGAG 57.838 41.667 0.00 0.00 0.00 3.69
2686 2846 6.747414 ATGTACAATGGTGCTATCTTAGGA 57.253 37.500 0.00 0.00 0.00 2.94
2687 2847 7.766278 GGATATGTACAATGGTGCTATCTTAGG 59.234 40.741 0.00 0.00 0.00 2.69
2688 2848 8.535335 AGGATATGTACAATGGTGCTATCTTAG 58.465 37.037 0.00 0.00 0.00 2.18
2689 2849 8.435931 AGGATATGTACAATGGTGCTATCTTA 57.564 34.615 0.00 0.00 0.00 2.10
2690 2850 7.321717 AGGATATGTACAATGGTGCTATCTT 57.678 36.000 0.00 0.00 0.00 2.40
2691 2851 6.942163 AGGATATGTACAATGGTGCTATCT 57.058 37.500 0.00 0.00 0.00 1.98
2773 2933 9.734620 ATAACAATAACAATCATGCATACACAC 57.265 29.630 0.00 0.00 0.00 3.82
2851 3011 6.986231 TCGACATGAAACTATTATGTGAGCAT 59.014 34.615 0.00 0.00 35.35 3.79
2882 3042 9.332502 TCATATATATGTGCAACCGTTTAACTT 57.667 29.630 19.78 0.00 34.36 2.66
2945 3105 2.544685 CACTCTGATTCCACCATCGTC 58.455 52.381 0.00 0.00 0.00 4.20
3123 3289 5.657474 TGATGATCGTGGTAAACTTCCTAC 58.343 41.667 0.00 0.00 0.00 3.18
3141 3307 0.107268 CCCGGCACATGATCTGATGA 59.893 55.000 0.00 0.00 0.00 2.92
3261 3433 3.579151 AGCGGGAGAAAGGTAATAGATCC 59.421 47.826 0.00 0.00 0.00 3.36
3266 3438 5.945310 TCTACTAGCGGGAGAAAGGTAATA 58.055 41.667 0.00 0.00 0.00 0.98
3285 3457 5.360714 TGGCATGGAAAATGAGGATTTCTAC 59.639 40.000 0.00 0.00 37.06 2.59
3312 3484 5.934935 TCAGGTTGTTCCTTCGTATTTTC 57.065 39.130 0.00 0.00 45.67 2.29
3320 3492 4.937201 ACCATTTTCAGGTTGTTCCTTC 57.063 40.909 0.00 0.00 45.67 3.46
3359 3532 4.884744 TCTCGGGTTTTCTTTGAATTGTCA 59.115 37.500 0.00 0.00 0.00 3.58
3361 3534 4.278419 CCTCTCGGGTTTTCTTTGAATTGT 59.722 41.667 0.00 0.00 0.00 2.71
3362 3535 4.321230 CCCTCTCGGGTTTTCTTTGAATTG 60.321 45.833 0.00 0.00 46.12 2.32
3363 3536 3.826729 CCCTCTCGGGTTTTCTTTGAATT 59.173 43.478 0.00 0.00 46.12 2.17
3377 3550 1.117150 TTCGGTTATTCCCCTCTCGG 58.883 55.000 0.00 0.00 0.00 4.63
3391 3564 6.448369 TCCCATCAATATTCCTTATTCGGT 57.552 37.500 0.00 0.00 0.00 4.69
3392 3565 7.759489 TTTCCCATCAATATTCCTTATTCGG 57.241 36.000 0.00 0.00 0.00 4.30
3393 3566 8.299570 CCTTTTCCCATCAATATTCCTTATTCG 58.700 37.037 0.00 0.00 0.00 3.34
3394 3567 8.588472 CCCTTTTCCCATCAATATTCCTTATTC 58.412 37.037 0.00 0.00 0.00 1.75
3396 3569 7.018769 CCCCTTTTCCCATCAATATTCCTTAT 58.981 38.462 0.00 0.00 0.00 1.73
3397 3570 6.163139 TCCCCTTTTCCCATCAATATTCCTTA 59.837 38.462 0.00 0.00 0.00 2.69
3398 3571 5.042676 TCCCCTTTTCCCATCAATATTCCTT 60.043 40.000 0.00 0.00 0.00 3.36
3399 3572 4.485775 TCCCCTTTTCCCATCAATATTCCT 59.514 41.667 0.00 0.00 0.00 3.36
3401 3574 6.611236 TCTTTCCCCTTTTCCCATCAATATTC 59.389 38.462 0.00 0.00 0.00 1.75
3402 3575 6.511208 TCTTTCCCCTTTTCCCATCAATATT 58.489 36.000 0.00 0.00 0.00 1.28
3404 3577 5.544441 TCTTTCCCCTTTTCCCATCAATA 57.456 39.130 0.00 0.00 0.00 1.90
3405 3578 4.418395 TCTTTCCCCTTTTCCCATCAAT 57.582 40.909 0.00 0.00 0.00 2.57
3406 3579 3.913370 TCTTTCCCCTTTTCCCATCAA 57.087 42.857 0.00 0.00 0.00 2.57
3407 3580 3.913370 TTCTTTCCCCTTTTCCCATCA 57.087 42.857 0.00 0.00 0.00 3.07
3408 3581 4.162320 GGATTTCTTTCCCCTTTTCCCATC 59.838 45.833 0.00 0.00 0.00 3.51
3409 3582 4.104086 GGATTTCTTTCCCCTTTTCCCAT 58.896 43.478 0.00 0.00 0.00 4.00
3410 3583 3.143933 AGGATTTCTTTCCCCTTTTCCCA 59.856 43.478 0.00 0.00 36.35 4.37
3411 3584 3.791320 AGGATTTCTTTCCCCTTTTCCC 58.209 45.455 0.00 0.00 36.35 3.97
3450 3623 7.094634 GGATCGATGCATTCCTTACATTTGTAT 60.095 37.037 12.54 0.00 0.00 2.29
3486 3659 9.796120 CCATGTGTTCAAAGTTCTACTTTTTAA 57.204 29.630 2.22 0.00 45.38 1.52
3487 3660 7.918562 GCCATGTGTTCAAAGTTCTACTTTTTA 59.081 33.333 2.22 0.00 45.38 1.52
3491 3664 5.009010 CAGCCATGTGTTCAAAGTTCTACTT 59.991 40.000 0.00 0.00 40.80 2.24
3565 3743 6.940867 ACTTATACTCAACCTTTCCCTGAAAC 59.059 38.462 0.00 0.00 0.00 2.78
3675 3854 3.748048 TGTCACTCTTGCATAGACTTTGC 59.252 43.478 10.61 10.61 40.55 3.68
3679 3858 2.094494 CCGTGTCACTCTTGCATAGACT 60.094 50.000 0.65 0.00 0.00 3.24
3684 3863 0.396435 TTCCCGTGTCACTCTTGCAT 59.604 50.000 0.65 0.00 0.00 3.96
3710 3889 1.762460 CTGGTCCGCACCTCCCTAT 60.762 63.158 0.00 0.00 44.17 2.57
3711 3890 2.363795 CTGGTCCGCACCTCCCTA 60.364 66.667 0.00 0.00 44.17 3.53
3716 3895 4.316823 TCTCCCTGGTCCGCACCT 62.317 66.667 0.00 0.00 44.17 4.00
3717 3896 3.775654 CTCTCCCTGGTCCGCACC 61.776 72.222 0.00 0.00 44.10 5.01
3719 3898 1.125093 TTTTCTCTCCCTGGTCCGCA 61.125 55.000 0.00 0.00 0.00 5.69
3739 3919 5.710646 AGCTATTGTCTCCTTCCTCTCATA 58.289 41.667 0.00 0.00 0.00 2.15
3742 3922 3.957497 TGAGCTATTGTCTCCTTCCTCTC 59.043 47.826 0.00 0.00 0.00 3.20
3776 3956 0.597072 GAGAGGTTATCCTACGGGCG 59.403 60.000 0.00 0.00 45.24 6.13
3809 3989 1.541310 TTGTAGACCCAGGCTCACGG 61.541 60.000 0.00 0.00 0.00 4.94
3810 3990 0.537188 ATTGTAGACCCAGGCTCACG 59.463 55.000 0.00 0.00 0.00 4.35
3811 3991 1.407437 CCATTGTAGACCCAGGCTCAC 60.407 57.143 0.00 0.00 0.00 3.51
3812 3992 0.911769 CCATTGTAGACCCAGGCTCA 59.088 55.000 0.00 0.00 0.00 4.26
3813 3993 1.204146 TCCATTGTAGACCCAGGCTC 58.796 55.000 0.00 0.00 0.00 4.70
3814 3994 1.668826 TTCCATTGTAGACCCAGGCT 58.331 50.000 0.00 0.00 0.00 4.58
3815 3995 2.507407 TTTCCATTGTAGACCCAGGC 57.493 50.000 0.00 0.00 0.00 4.85
3816 3996 4.235079 TGATTTCCATTGTAGACCCAGG 57.765 45.455 0.00 0.00 0.00 4.45
3817 3997 5.066893 CACATGATTTCCATTGTAGACCCAG 59.933 44.000 0.00 0.00 31.94 4.45
3818 3998 4.949238 CACATGATTTCCATTGTAGACCCA 59.051 41.667 0.00 0.00 31.94 4.51
3819 3999 4.949856 ACACATGATTTCCATTGTAGACCC 59.050 41.667 0.00 0.00 31.94 4.46
3820 4000 7.336931 AGTTACACATGATTTCCATTGTAGACC 59.663 37.037 0.00 0.00 34.02 3.85
3821 4001 8.268850 AGTTACACATGATTTCCATTGTAGAC 57.731 34.615 0.00 0.00 34.02 2.59
3822 4002 7.277760 CGAGTTACACATGATTTCCATTGTAGA 59.722 37.037 0.00 0.00 34.02 2.59
3823 4003 7.401860 CGAGTTACACATGATTTCCATTGTAG 58.598 38.462 0.00 0.00 34.02 2.74
3824 4004 6.315144 CCGAGTTACACATGATTTCCATTGTA 59.685 38.462 0.00 0.00 31.94 2.41
3825 4005 5.123820 CCGAGTTACACATGATTTCCATTGT 59.876 40.000 0.00 0.00 31.94 2.71
3826 4006 5.449041 CCCGAGTTACACATGATTTCCATTG 60.449 44.000 0.00 0.00 31.94 2.82
3827 4007 4.640201 CCCGAGTTACACATGATTTCCATT 59.360 41.667 0.00 0.00 31.94 3.16
3828 4008 4.199310 CCCGAGTTACACATGATTTCCAT 58.801 43.478 0.00 0.00 35.44 3.41
3829 4009 3.605634 CCCGAGTTACACATGATTTCCA 58.394 45.455 0.00 0.00 0.00 3.53
3830 4010 2.354821 GCCCGAGTTACACATGATTTCC 59.645 50.000 0.00 0.00 0.00 3.13
3831 4011 3.006940 TGCCCGAGTTACACATGATTTC 58.993 45.455 0.00 0.00 0.00 2.17
3832 4012 3.009723 CTGCCCGAGTTACACATGATTT 58.990 45.455 0.00 0.00 0.00 2.17
3833 4013 2.236146 TCTGCCCGAGTTACACATGATT 59.764 45.455 0.00 0.00 0.00 2.57
3834 4014 1.831106 TCTGCCCGAGTTACACATGAT 59.169 47.619 0.00 0.00 0.00 2.45
3835 4015 1.262417 TCTGCCCGAGTTACACATGA 58.738 50.000 0.00 0.00 0.00 3.07
3836 4016 2.315925 ATCTGCCCGAGTTACACATG 57.684 50.000 0.00 0.00 0.00 3.21
3837 4017 2.632377 CAATCTGCCCGAGTTACACAT 58.368 47.619 0.00 0.00 0.00 3.21
3838 4018 1.943968 GCAATCTGCCCGAGTTACACA 60.944 52.381 0.00 0.00 37.42 3.72
3839 4019 0.727398 GCAATCTGCCCGAGTTACAC 59.273 55.000 0.00 0.00 37.42 2.90
3840 4020 3.153024 GCAATCTGCCCGAGTTACA 57.847 52.632 0.00 0.00 37.42 2.41
3850 4030 3.243434 CCTTGATCTGATTGGCAATCTGC 60.243 47.826 33.21 22.72 44.08 4.26
3851 4031 3.243434 GCCTTGATCTGATTGGCAATCTG 60.243 47.826 33.21 31.67 42.79 2.90
3852 4032 2.957006 GCCTTGATCTGATTGGCAATCT 59.043 45.455 33.21 18.64 42.79 2.40
3853 4033 2.287427 CGCCTTGATCTGATTGGCAATC 60.287 50.000 28.92 28.92 43.38 2.67
3854 4034 1.679680 CGCCTTGATCTGATTGGCAAT 59.320 47.619 13.54 13.54 43.38 3.56
3855 4035 1.097232 CGCCTTGATCTGATTGGCAA 58.903 50.000 21.35 0.68 43.38 4.52
3856 4036 0.035152 ACGCCTTGATCTGATTGGCA 60.035 50.000 21.35 3.15 43.38 4.92
3857 4037 0.659957 GACGCCTTGATCTGATTGGC 59.340 55.000 15.55 15.55 40.14 4.52
3858 4038 2.208431 GAGACGCCTTGATCTGATTGG 58.792 52.381 0.00 0.00 0.00 3.16
3859 4039 1.857217 CGAGACGCCTTGATCTGATTG 59.143 52.381 0.00 0.00 0.00 2.67
3860 4040 1.478510 ACGAGACGCCTTGATCTGATT 59.521 47.619 0.00 0.00 0.00 2.57
3861 4041 1.107114 ACGAGACGCCTTGATCTGAT 58.893 50.000 0.00 0.00 0.00 2.90
3862 4042 0.888619 AACGAGACGCCTTGATCTGA 59.111 50.000 0.00 0.00 0.00 3.27
3863 4043 1.272781 GAACGAGACGCCTTGATCTG 58.727 55.000 0.00 0.00 0.00 2.90
3864 4044 0.179161 CGAACGAGACGCCTTGATCT 60.179 55.000 0.00 0.00 0.00 2.75
3865 4045 1.140407 CCGAACGAGACGCCTTGATC 61.140 60.000 0.00 0.00 0.00 2.92
3866 4046 1.153823 CCGAACGAGACGCCTTGAT 60.154 57.895 0.00 0.00 0.00 2.57
3867 4047 2.257371 CCGAACGAGACGCCTTGA 59.743 61.111 0.00 0.00 0.00 3.02
3868 4048 3.479269 GCCGAACGAGACGCCTTG 61.479 66.667 0.00 0.00 0.00 3.61
3869 4049 4.736896 GGCCGAACGAGACGCCTT 62.737 66.667 0.00 0.00 0.00 4.35
3874 4054 3.011760 CTTTGCGGCCGAACGAGAC 62.012 63.158 33.48 9.92 35.47 3.36
3875 4055 2.736995 CTTTGCGGCCGAACGAGA 60.737 61.111 33.48 0.00 35.47 4.04
3876 4056 4.445545 GCTTTGCGGCCGAACGAG 62.446 66.667 33.48 20.39 35.47 4.18
3887 4067 4.043200 GTGCTCGTGGGGCTTTGC 62.043 66.667 0.00 0.00 0.00 3.68
3888 4068 3.726517 CGTGCTCGTGGGGCTTTG 61.727 66.667 0.00 0.00 0.00 2.77
3893 4073 3.499737 GATTGCGTGCTCGTGGGG 61.500 66.667 10.18 0.00 39.49 4.96
3894 4074 2.741985 TGATTGCGTGCTCGTGGG 60.742 61.111 10.18 0.00 39.49 4.61
3895 4075 0.735978 TACTGATTGCGTGCTCGTGG 60.736 55.000 10.18 0.00 39.49 4.94
3896 4076 1.059692 CTTACTGATTGCGTGCTCGTG 59.940 52.381 10.18 0.00 39.49 4.35
3897 4077 1.350193 CTTACTGATTGCGTGCTCGT 58.650 50.000 10.18 0.00 39.49 4.18
3898 4078 0.647410 CCTTACTGATTGCGTGCTCG 59.353 55.000 3.31 3.31 40.37 5.03
3899 4079 0.375106 GCCTTACTGATTGCGTGCTC 59.625 55.000 0.00 0.00 0.00 4.26
3900 4080 0.321564 TGCCTTACTGATTGCGTGCT 60.322 50.000 0.00 0.00 0.00 4.40
3901 4081 0.179189 GTGCCTTACTGATTGCGTGC 60.179 55.000 0.00 0.00 0.00 5.34
3902 4082 1.155889 TGTGCCTTACTGATTGCGTG 58.844 50.000 0.00 0.00 0.00 5.34
3903 4083 1.535462 GTTGTGCCTTACTGATTGCGT 59.465 47.619 0.00 0.00 0.00 5.24
3904 4084 1.135689 GGTTGTGCCTTACTGATTGCG 60.136 52.381 0.00 0.00 0.00 4.85
3905 4085 2.636768 GGTTGTGCCTTACTGATTGC 57.363 50.000 0.00 0.00 0.00 3.56
3916 4096 3.050275 GCGGACAGAGGTTGTGCC 61.050 66.667 0.00 0.00 44.51 5.01
3917 4097 3.050275 GGCGGACAGAGGTTGTGC 61.050 66.667 0.00 0.00 43.97 4.57
3918 4098 1.374758 GAGGCGGACAGAGGTTGTG 60.375 63.158 0.00 0.00 41.05 3.33
3919 4099 2.584391 GGAGGCGGACAGAGGTTGT 61.584 63.158 0.00 0.00 44.55 3.32
3920 4100 2.266055 GGAGGCGGACAGAGGTTG 59.734 66.667 0.00 0.00 0.00 3.77
3921 4101 2.203788 TGGAGGCGGACAGAGGTT 60.204 61.111 0.00 0.00 0.00 3.50
3922 4102 2.681778 CTGGAGGCGGACAGAGGT 60.682 66.667 0.75 0.00 36.86 3.85
3923 4103 2.232298 GAACTGGAGGCGGACAGAGG 62.232 65.000 11.94 0.00 38.09 3.69
3924 4104 1.216710 GAACTGGAGGCGGACAGAG 59.783 63.158 11.94 0.00 38.09 3.35
3925 4105 2.283529 GGAACTGGAGGCGGACAGA 61.284 63.158 11.94 0.00 38.09 3.41
3926 4106 2.266055 GGAACTGGAGGCGGACAG 59.734 66.667 4.91 4.91 40.48 3.51
3927 4107 2.525629 TGGAACTGGAGGCGGACA 60.526 61.111 0.00 0.00 0.00 4.02
3928 4108 2.047179 GTGGAACTGGAGGCGGAC 60.047 66.667 0.00 0.00 0.00 4.79
3939 4119 1.981256 TTGCCTCCTTGAAGTGGAAC 58.019 50.000 5.79 0.00 32.61 3.62
3940 4120 2.091885 ACTTTGCCTCCTTGAAGTGGAA 60.092 45.455 5.79 0.00 31.59 3.53
3941 4121 1.494721 ACTTTGCCTCCTTGAAGTGGA 59.505 47.619 5.79 0.00 31.59 4.02
3942 4122 1.986882 ACTTTGCCTCCTTGAAGTGG 58.013 50.000 0.00 0.00 31.59 4.00
3943 4123 3.360249 CAACTTTGCCTCCTTGAAGTG 57.640 47.619 0.00 0.00 33.02 3.16
3956 4136 1.002468 CTGACAACTCGGGCAACTTTG 60.002 52.381 0.00 0.00 0.00 2.77
3957 4137 1.134220 TCTGACAACTCGGGCAACTTT 60.134 47.619 0.00 0.00 0.00 2.66
3958 4138 0.468226 TCTGACAACTCGGGCAACTT 59.532 50.000 0.00 0.00 0.00 2.66
3959 4139 0.249911 GTCTGACAACTCGGGCAACT 60.250 55.000 2.24 0.00 0.00 3.16
3960 4140 1.557443 CGTCTGACAACTCGGGCAAC 61.557 60.000 8.73 0.00 0.00 4.17
3961 4141 1.300620 CGTCTGACAACTCGGGCAA 60.301 57.895 8.73 0.00 0.00 4.52
3962 4142 2.338620 CGTCTGACAACTCGGGCA 59.661 61.111 8.73 0.00 0.00 5.36
3963 4143 2.430382 TTCCGTCTGACAACTCGGGC 62.430 60.000 8.73 0.00 42.71 6.13
3964 4144 0.032952 TTTCCGTCTGACAACTCGGG 59.967 55.000 8.73 0.00 42.71 5.14
3965 4145 1.792949 CTTTTCCGTCTGACAACTCGG 59.207 52.381 8.73 2.95 43.65 4.63
3966 4146 2.471743 GTCTTTTCCGTCTGACAACTCG 59.528 50.000 8.73 0.00 0.00 4.18
3967 4147 3.454375 TGTCTTTTCCGTCTGACAACTC 58.546 45.455 8.73 0.00 36.64 3.01
3968 4148 3.536956 TGTCTTTTCCGTCTGACAACT 57.463 42.857 8.73 0.00 36.64 3.16
3969 4149 3.058914 CCATGTCTTTTCCGTCTGACAAC 60.059 47.826 8.73 0.00 41.78 3.32
3970 4150 3.138304 CCATGTCTTTTCCGTCTGACAA 58.862 45.455 8.73 0.00 41.78 3.18
3971 4151 2.367241 TCCATGTCTTTTCCGTCTGACA 59.633 45.455 8.73 0.00 42.50 3.58
3972 4152 2.737252 GTCCATGTCTTTTCCGTCTGAC 59.263 50.000 0.00 0.00 0.00 3.51
3973 4153 2.367241 TGTCCATGTCTTTTCCGTCTGA 59.633 45.455 0.00 0.00 0.00 3.27
3974 4154 2.766313 TGTCCATGTCTTTTCCGTCTG 58.234 47.619 0.00 0.00 0.00 3.51
3975 4155 3.139077 GTTGTCCATGTCTTTTCCGTCT 58.861 45.455 0.00 0.00 0.00 4.18
3976 4156 2.225727 GGTTGTCCATGTCTTTTCCGTC 59.774 50.000 0.00 0.00 0.00 4.79
3977 4157 2.158667 AGGTTGTCCATGTCTTTTCCGT 60.159 45.455 0.00 0.00 35.89 4.69
3978 4158 2.226437 CAGGTTGTCCATGTCTTTTCCG 59.774 50.000 0.00 0.00 35.89 4.30
3979 4159 2.029918 GCAGGTTGTCCATGTCTTTTCC 60.030 50.000 0.00 0.00 35.89 3.13
3980 4160 2.622942 TGCAGGTTGTCCATGTCTTTTC 59.377 45.455 0.00 0.00 35.89 2.29
3981 4161 2.665165 TGCAGGTTGTCCATGTCTTTT 58.335 42.857 0.00 0.00 35.89 2.27
3982 4162 2.362077 GTTGCAGGTTGTCCATGTCTTT 59.638 45.455 0.00 0.00 35.89 2.52
3983 4163 1.956477 GTTGCAGGTTGTCCATGTCTT 59.044 47.619 0.00 0.00 35.89 3.01
3984 4164 1.609208 GTTGCAGGTTGTCCATGTCT 58.391 50.000 0.00 0.00 35.89 3.41
3985 4165 0.238289 CGTTGCAGGTTGTCCATGTC 59.762 55.000 0.00 0.00 35.89 3.06
3986 4166 1.172180 CCGTTGCAGGTTGTCCATGT 61.172 55.000 0.00 0.00 35.89 3.21
3987 4167 1.580942 CCGTTGCAGGTTGTCCATG 59.419 57.895 0.00 0.00 35.89 3.66
3988 4168 2.268076 GCCGTTGCAGGTTGTCCAT 61.268 57.895 0.00 0.00 37.47 3.41
3989 4169 2.904866 GCCGTTGCAGGTTGTCCA 60.905 61.111 0.00 0.00 37.47 4.02
3990 4170 4.025401 CGCCGTTGCAGGTTGTCC 62.025 66.667 0.00 0.00 37.32 4.02
3991 4171 4.683334 GCGCCGTTGCAGGTTGTC 62.683 66.667 0.00 0.00 37.32 3.18
4019 4199 2.539476 CAACGCCAAATAGGAAATGCC 58.461 47.619 0.00 0.00 41.22 4.40
4020 4200 1.926510 GCAACGCCAAATAGGAAATGC 59.073 47.619 0.00 0.00 41.22 3.56
4021 4201 3.181397 CTGCAACGCCAAATAGGAAATG 58.819 45.455 0.00 0.00 41.22 2.32
4022 4202 2.166254 CCTGCAACGCCAAATAGGAAAT 59.834 45.455 0.00 0.00 41.22 2.17
4023 4203 1.543802 CCTGCAACGCCAAATAGGAAA 59.456 47.619 0.00 0.00 41.22 3.13
4024 4204 1.173043 CCTGCAACGCCAAATAGGAA 58.827 50.000 0.00 0.00 41.22 3.36
4025 4205 1.312371 GCCTGCAACGCCAAATAGGA 61.312 55.000 0.00 0.00 41.22 2.94
4026 4206 1.139520 GCCTGCAACGCCAAATAGG 59.860 57.895 0.00 0.00 41.84 2.57
4027 4207 1.226379 CGCCTGCAACGCCAAATAG 60.226 57.895 0.09 0.00 0.00 1.73
4028 4208 2.874019 CGCCTGCAACGCCAAATA 59.126 55.556 0.09 0.00 0.00 1.40
4049 4229 1.529244 GCAGGATGGGGTATGCACC 60.529 63.158 0.00 0.00 39.74 5.01
4050 4230 1.893808 CGCAGGATGGGGTATGCAC 60.894 63.158 0.00 0.00 46.46 4.57
4051 4231 2.510411 CGCAGGATGGGGTATGCA 59.490 61.111 0.00 0.00 46.46 3.96
4060 4240 2.712325 CTAGCCCAGCTCGCAGGATG 62.712 65.000 1.51 0.00 40.44 3.51
4061 4241 2.444706 TAGCCCAGCTCGCAGGAT 60.445 61.111 1.51 0.00 40.44 3.24
4062 4242 3.150335 CTAGCCCAGCTCGCAGGA 61.150 66.667 1.51 0.00 40.44 3.86
4063 4243 4.906792 GCTAGCCCAGCTCGCAGG 62.907 72.222 2.29 0.00 44.90 4.85
4064 4244 4.906792 GGCTAGCCCAGCTCGCAG 62.907 72.222 24.19 0.00 46.87 5.18
4074 4254 4.092116 ACAAAAGATAGATGGGCTAGCC 57.908 45.455 26.55 26.55 36.13 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.