Multiple sequence alignment - TraesCS7A01G119300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G119300 chr7A 100.000 7722 0 0 1 7722 76945048 76937327 0.000000e+00 14260.0
1 TraesCS7A01G119300 chr7A 86.517 4361 432 87 178 4503 76518189 76513950 0.000000e+00 4652.0
2 TraesCS7A01G119300 chr7A 85.087 2072 240 47 2444 4503 76985231 76983217 0.000000e+00 2050.0
3 TraesCS7A01G119300 chr7A 87.806 1673 164 30 2452 4112 77159246 77160890 0.000000e+00 1923.0
4 TraesCS7A01G119300 chr7A 86.650 809 87 14 5932 6728 76511822 76511023 0.000000e+00 876.0
5 TraesCS7A01G119300 chr7A 89.589 682 63 4 5149 5827 76982385 76981709 0.000000e+00 859.0
6 TraesCS7A01G119300 chr7A 85.644 808 95 14 5929 6725 76832502 76833299 0.000000e+00 830.0
7 TraesCS7A01G119300 chr7A 86.811 599 67 11 5929 6519 76981363 76980769 0.000000e+00 658.0
8 TraesCS7A01G119300 chr7A 83.846 130 18 2 4517 4646 77161311 77161437 3.780000e-23 121.0
9 TraesCS7A01G119300 chr7D 92.592 3820 202 32 3143 6952 70830406 70826658 0.000000e+00 5411.0
10 TraesCS7A01G119300 chr7D 87.897 3900 373 48 624 4503 70746854 70750674 0.000000e+00 4495.0
11 TraesCS7A01G119300 chr7D 88.113 3710 345 45 812 4503 69943365 69939734 0.000000e+00 4320.0
12 TraesCS7A01G119300 chr7D 85.961 3583 413 52 938 4503 71217754 71214245 0.000000e+00 3747.0
13 TraesCS7A01G119300 chr7D 92.514 2498 170 13 638 3125 70832972 70830482 0.000000e+00 3561.0
14 TraesCS7A01G119300 chr7D 87.096 2813 273 41 624 3409 70230111 70232860 0.000000e+00 3101.0
15 TraesCS7A01G119300 chr7D 87.317 1711 211 3 624 2332 71551224 71549518 0.000000e+00 1953.0
16 TraesCS7A01G119300 chr7D 88.077 1602 157 17 2517 4112 71548772 71547199 0.000000e+00 1869.0
17 TraesCS7A01G119300 chr7D 87.546 1630 177 18 2463 4083 71344893 71346505 0.000000e+00 1862.0
18 TraesCS7A01G119300 chr7D 86.453 812 86 15 5929 6725 70752808 70753610 0.000000e+00 869.0
19 TraesCS7A01G119300 chr7D 87.143 770 81 12 5061 5827 71546129 71545375 0.000000e+00 857.0
20 TraesCS7A01G119300 chr7D 89.003 682 68 3 5149 5827 71213628 71212951 0.000000e+00 837.0
21 TraesCS7A01G119300 chr7D 87.252 604 65 7 5925 6519 71212068 71211468 0.000000e+00 678.0
22 TraesCS7A01G119300 chr7D 85.740 547 50 10 77 614 70833571 70833044 3.150000e-153 553.0
23 TraesCS7A01G119300 chr7D 91.622 370 29 2 4131 4499 72170849 72171217 1.920000e-140 510.0
24 TraesCS7A01G119300 chr7D 89.655 377 18 7 7067 7443 70826504 70826149 1.960000e-125 460.0
25 TraesCS7A01G119300 chr7D 80.556 468 64 16 150 614 69945844 69945401 1.240000e-87 335.0
26 TraesCS7A01G119300 chr7D 78.863 563 70 22 72 614 70746263 70746796 1.240000e-87 335.0
27 TraesCS7A01G119300 chr7D 86.942 291 38 0 324 614 70229756 70230046 2.080000e-85 327.0
28 TraesCS7A01G119300 chr7D 79.898 393 55 14 6559 6942 70067217 70067594 4.590000e-67 267.0
29 TraesCS7A01G119300 chr7D 88.393 224 9 8 7514 7721 70825532 70825310 3.580000e-63 254.0
30 TraesCS7A01G119300 chr7D 75.921 407 52 27 4515 4918 72171205 72171568 4.790000e-37 167.0
31 TraesCS7A01G119300 chr7B 93.919 3503 188 8 624 4114 13119035 13115546 0.000000e+00 5265.0
32 TraesCS7A01G119300 chr7B 87.943 3898 367 52 626 4503 12539177 12535363 0.000000e+00 4499.0
33 TraesCS7A01G119300 chr7B 87.092 3184 336 47 930 4092 13881231 13878102 0.000000e+00 3533.0
34 TraesCS7A01G119300 chr7B 88.165 1673 163 27 2452 4112 14996084 14997733 0.000000e+00 1960.0
35 TraesCS7A01G119300 chr7B 89.817 1149 80 20 4699 5827 13114629 13113498 0.000000e+00 1439.0
36 TraesCS7A01G119300 chr7B 86.624 785 79 17 5061 5825 14065933 14065155 0.000000e+00 845.0
37 TraesCS7A01G119300 chr7B 84.558 803 88 16 5932 6728 12533239 12532467 0.000000e+00 763.0
38 TraesCS7A01G119300 chr7B 86.914 619 68 9 5929 6538 13859821 13859207 0.000000e+00 682.0
39 TraesCS7A01G119300 chr7B 95.491 377 16 1 4128 4503 13115426 13115050 1.110000e-167 601.0
40 TraesCS7A01G119300 chr7B 85.249 583 50 16 46 614 13119653 13119093 1.120000e-157 568.0
41 TraesCS7A01G119300 chr7B 92.742 372 15 3 6605 6971 13112274 13111910 1.910000e-145 527.0
42 TraesCS7A01G119300 chr7B 92.164 268 16 3 5929 6193 13113057 13112792 2.630000e-99 374.0
43 TraesCS7A01G119300 chr7B 81.148 488 49 24 150 614 12539704 12539237 1.230000e-92 351.0
44 TraesCS7A01G119300 chr7B 86.986 292 37 1 324 614 12794836 12795127 2.080000e-85 327.0
45 TraesCS7A01G119300 chr7B 91.500 200 15 1 7217 7416 13111783 13111586 2.750000e-69 274.0
46 TraesCS7A01G119300 chr7B 90.341 176 15 2 6554 6728 13859135 13858961 6.030000e-56 230.0
47 TraesCS7A01G119300 chr7B 81.933 238 33 7 6558 6793 13812934 13812705 7.910000e-45 193.0
48 TraesCS7A01G119300 chr7B 81.853 259 10 8 7488 7722 13109843 13109598 4.760000e-42 183.0
49 TraesCS7A01G119300 chr7B 89.362 141 10 1 4514 4654 13115067 13114932 1.030000e-38 172.0
50 TraesCS7A01G119300 chr7B 75.309 405 54 27 4517 4918 14998154 14998515 1.340000e-32 152.0
51 TraesCS7A01G119300 chr7B 100.000 41 0 0 7445 7485 482482268 482482228 8.310000e-10 76.8
52 TraesCS7A01G119300 chrUn 85.627 3583 415 60 938 4503 84288202 84284703 0.000000e+00 3672.0
53 TraesCS7A01G119300 chrUn 85.627 3583 415 60 938 4503 226941527 226938028 0.000000e+00 3672.0
54 TraesCS7A01G119300 chrUn 86.680 3093 344 41 983 4061 84239821 84236783 0.000000e+00 3367.0
55 TraesCS7A01G119300 chrUn 87.661 1710 206 4 624 2332 84402049 84403754 0.000000e+00 1984.0
56 TraesCS7A01G119300 chrUn 88.048 1598 160 17 2518 4112 82528720 82527151 0.000000e+00 1864.0
57 TraesCS7A01G119300 chrUn 87.664 1597 167 16 2519 4112 84249172 84247603 0.000000e+00 1831.0
58 TraesCS7A01G119300 chrUn 90.715 937 76 6 3144 4077 82518210 82517282 0.000000e+00 1238.0
59 TraesCS7A01G119300 chrUn 82.006 1067 131 43 4798 5827 84247059 84246017 0.000000e+00 850.0
60 TraesCS7A01G119300 chrUn 89.150 682 67 3 5149 5827 84284188 84283511 0.000000e+00 843.0
61 TraesCS7A01G119300 chrUn 89.150 682 67 3 5149 5827 226937513 226936836 0.000000e+00 843.0
62 TraesCS7A01G119300 chrUn 86.515 571 70 6 6191 6759 84440267 84440832 8.510000e-174 621.0
63 TraesCS7A01G119300 chrUn 92.697 356 25 1 4145 4499 82517177 82516822 5.340000e-141 512.0
64 TraesCS7A01G119300 chr2B 87.052 3182 341 42 930 4092 723405159 723402030 0.000000e+00 3528.0
65 TraesCS7A01G119300 chr2B 87.772 597 60 10 5929 6516 723388370 723387778 0.000000e+00 686.0
66 TraesCS7A01G119300 chr2B 92.978 356 24 1 4145 4499 723393654 723393299 1.150000e-142 518.0
67 TraesCS7A01G119300 chr2B 91.228 57 2 2 7431 7486 275251550 275251604 2.990000e-09 75.0
68 TraesCS7A01G119300 chr4A 100.000 42 0 0 7445 7486 636409776 636409817 2.310000e-10 78.7
69 TraesCS7A01G119300 chr1B 100.000 42 0 0 7445 7486 401319175 401319134 2.310000e-10 78.7
70 TraesCS7A01G119300 chr5D 95.833 48 1 1 7440 7486 564486675 564486722 8.310000e-10 76.8
71 TraesCS7A01G119300 chr6B 95.745 47 1 1 7442 7487 51987791 51987837 2.990000e-09 75.0
72 TraesCS7A01G119300 chr4B 92.453 53 3 1 7435 7486 242718846 242718794 2.990000e-09 75.0
73 TraesCS7A01G119300 chr4B 95.745 47 1 1 7441 7486 643500628 643500582 2.990000e-09 75.0
74 TraesCS7A01G119300 chr3B 92.453 53 2 2 7436 7487 513687149 513687200 2.990000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G119300 chr7A 76937327 76945048 7721 True 14260.000000 14260 100.000000 1 7722 1 chr7A.!!$R1 7721
1 TraesCS7A01G119300 chr7A 76511023 76518189 7166 True 2764.000000 4652 86.583500 178 6728 2 chr7A.!!$R2 6550
2 TraesCS7A01G119300 chr7A 76980769 76985231 4462 True 1189.000000 2050 87.162333 2444 6519 3 chr7A.!!$R3 4075
3 TraesCS7A01G119300 chr7A 77159246 77161437 2191 False 1022.000000 1923 85.826000 2452 4646 2 chr7A.!!$F2 2194
4 TraesCS7A01G119300 chr7A 76832502 76833299 797 False 830.000000 830 85.644000 5929 6725 1 chr7A.!!$F1 796
5 TraesCS7A01G119300 chr7D 69939734 69945844 6110 True 2327.500000 4320 84.334500 150 4503 2 chr7D.!!$R1 4353
6 TraesCS7A01G119300 chr7D 70825310 70833571 8261 True 2047.800000 5411 89.778800 77 7721 5 chr7D.!!$R2 7644
7 TraesCS7A01G119300 chr7D 70746263 70753610 7347 False 1899.666667 4495 84.404333 72 6725 3 chr7D.!!$F4 6653
8 TraesCS7A01G119300 chr7D 71344893 71346505 1612 False 1862.000000 1862 87.546000 2463 4083 1 chr7D.!!$F2 1620
9 TraesCS7A01G119300 chr7D 71211468 71217754 6286 True 1754.000000 3747 87.405333 938 6519 3 chr7D.!!$R3 5581
10 TraesCS7A01G119300 chr7D 70229756 70232860 3104 False 1714.000000 3101 87.019000 324 3409 2 chr7D.!!$F3 3085
11 TraesCS7A01G119300 chr7D 71545375 71551224 5849 True 1559.666667 1953 87.512333 624 5827 3 chr7D.!!$R4 5203
12 TraesCS7A01G119300 chr7D 72170849 72171568 719 False 338.500000 510 83.771500 4131 4918 2 chr7D.!!$F5 787
13 TraesCS7A01G119300 chr7B 13878102 13881231 3129 True 3533.000000 3533 87.092000 930 4092 1 chr7B.!!$R2 3162
14 TraesCS7A01G119300 chr7B 12532467 12539704 7237 True 1871.000000 4499 84.549667 150 6728 3 chr7B.!!$R5 6578
15 TraesCS7A01G119300 chr7B 14996084 14998515 2431 False 1056.000000 1960 81.737000 2452 4918 2 chr7B.!!$F2 2466
16 TraesCS7A01G119300 chr7B 13109598 13119653 10055 True 1044.777778 5265 90.233000 46 7722 9 chr7B.!!$R6 7676
17 TraesCS7A01G119300 chr7B 14065155 14065933 778 True 845.000000 845 86.624000 5061 5825 1 chr7B.!!$R3 764
18 TraesCS7A01G119300 chr7B 13858961 13859821 860 True 456.000000 682 88.627500 5929 6728 2 chr7B.!!$R7 799
19 TraesCS7A01G119300 chrUn 84236783 84239821 3038 True 3367.000000 3367 86.680000 983 4061 1 chrUn.!!$R2 3078
20 TraesCS7A01G119300 chrUn 84283511 84288202 4691 True 2257.500000 3672 87.388500 938 5827 2 chrUn.!!$R5 4889
21 TraesCS7A01G119300 chrUn 226936836 226941527 4691 True 2257.500000 3672 87.388500 938 5827 2 chrUn.!!$R6 4889
22 TraesCS7A01G119300 chrUn 84402049 84403754 1705 False 1984.000000 1984 87.661000 624 2332 1 chrUn.!!$F1 1708
23 TraesCS7A01G119300 chrUn 82527151 82528720 1569 True 1864.000000 1864 88.048000 2518 4112 1 chrUn.!!$R1 1594
24 TraesCS7A01G119300 chrUn 84246017 84249172 3155 True 1340.500000 1831 84.835000 2519 5827 2 chrUn.!!$R4 3308
25 TraesCS7A01G119300 chrUn 82516822 82518210 1388 True 875.000000 1238 91.706000 3144 4499 2 chrUn.!!$R3 1355
26 TraesCS7A01G119300 chrUn 84440267 84440832 565 False 621.000000 621 86.515000 6191 6759 1 chrUn.!!$F2 568
27 TraesCS7A01G119300 chr2B 723402030 723405159 3129 True 3528.000000 3528 87.052000 930 4092 1 chr2B.!!$R3 3162
28 TraesCS7A01G119300 chr2B 723387778 723388370 592 True 686.000000 686 87.772000 5929 6516 1 chr2B.!!$R1 587

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
23 24 0.031716 TGCTAGCAGTCTCCCATCCT 60.032 55.000 14.93 0.0 0.00 3.24 F
50 51 0.035317 TCATGCGAAGTTGCTCCAGT 59.965 50.000 0.00 0.0 35.36 4.00 F
322 323 0.108186 TGGAACGCCATGCTCTGTAG 60.108 55.000 0.00 0.0 39.92 2.74 F
578 633 0.108424 GCTCTCGTCTTCAGTGGCAT 60.108 55.000 0.00 0.0 0.00 4.40 F
768 878 0.318441 TCTGCTCTTCCTCGGTTGTG 59.682 55.000 0.00 0.0 0.00 3.33 F
981 2884 0.329596 AGATCACTCCCTTTGCCACC 59.670 55.000 0.00 0.0 0.00 4.61 F
1916 3820 1.002773 TCTCCTACTTTGGTTTCGGCC 59.997 52.381 0.00 0.0 0.00 6.13 F
2112 4016 2.424956 CCTGAGCTAAATGGGCAAGTTC 59.575 50.000 0.00 0.0 0.00 3.01 F
2133 4037 2.808543 CGGAAGAAATACTATGCTGGCC 59.191 50.000 0.00 0.0 0.00 5.36 F
3371 6044 4.885907 CAGTTGGTATTCATGGAAGCAGAT 59.114 41.667 0.00 0.0 0.00 2.90 F
3484 6169 2.356665 TGCTTTACCTGTGCCAGAAA 57.643 45.000 4.00 0.0 32.44 2.52 F
4664 7468 1.808411 TTGCCTTCTAGCCGAGTTTG 58.192 50.000 0.00 0.0 0.00 2.93 F
5142 9300 2.412847 GCTTATGTGCCGTTGTCAACTC 60.413 50.000 13.67 6.1 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1080 2983 0.321346 TCTTTGCTCGATCTGTGGCA 59.679 50.000 0.00 0.00 0.00 4.92 R
1347 3250 0.526096 GTGATTCGGCGCATTTGCAT 60.526 50.000 10.83 0.00 42.21 3.96 R
1916 3820 0.796312 AGCATGTTACAAAGGTCGCG 59.204 50.000 0.00 0.00 0.00 5.87 R
2102 4006 2.286365 ATTTCTTCCGAACTTGCCCA 57.714 45.000 0.00 0.00 0.00 5.36 R
2112 4016 2.808543 GGCCAGCATAGTATTTCTTCCG 59.191 50.000 0.00 0.00 0.00 4.30 R
2210 4120 3.149196 TCCAGCTTTGACCAACAGATTC 58.851 45.455 0.00 0.00 0.00 2.52 R
3373 6046 4.399618 GGCTTCACAGACTCTGTATAGACA 59.600 45.833 11.47 0.00 43.43 3.41 R
3374 6047 4.399618 TGGCTTCACAGACTCTGTATAGAC 59.600 45.833 11.47 13.36 43.43 2.59 R
3375 6048 4.600062 TGGCTTCACAGACTCTGTATAGA 58.400 43.478 11.47 2.75 43.43 1.98 R
4654 7458 0.179018 AAGCTTGTCCAAACTCGGCT 60.179 50.000 0.00 0.00 0.00 5.52 R
4967 8985 2.095372 GGCAGAACACGGCAAGTATAAC 59.905 50.000 0.00 0.00 0.00 1.89 R
5631 9841 0.777631 CAACAAGGCGAAACAATGCG 59.222 50.000 0.00 0.00 0.00 4.73 R
7063 12446 0.170561 GCCTTGCTGATGTTGCTCAG 59.829 55.000 0.00 0.00 44.51 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.935993 TTGTTGCTAGCAGTCTCCC 57.064 52.632 18.45 3.87 0.00 4.30
19 20 1.055849 TTGTTGCTAGCAGTCTCCCA 58.944 50.000 18.45 6.37 0.00 4.37
20 21 1.279496 TGTTGCTAGCAGTCTCCCAT 58.721 50.000 18.45 0.00 0.00 4.00
21 22 1.208052 TGTTGCTAGCAGTCTCCCATC 59.792 52.381 18.45 2.50 0.00 3.51
22 23 0.833287 TTGCTAGCAGTCTCCCATCC 59.167 55.000 18.45 0.00 0.00 3.51
23 24 0.031716 TGCTAGCAGTCTCCCATCCT 60.032 55.000 14.93 0.00 0.00 3.24
24 25 0.678950 GCTAGCAGTCTCCCATCCTC 59.321 60.000 10.63 0.00 0.00 3.71
25 26 0.958091 CTAGCAGTCTCCCATCCTCG 59.042 60.000 0.00 0.00 0.00 4.63
26 27 0.468214 TAGCAGTCTCCCATCCTCGG 60.468 60.000 0.00 0.00 0.00 4.63
27 28 1.758514 GCAGTCTCCCATCCTCGGA 60.759 63.158 0.00 0.00 0.00 4.55
28 29 1.118356 GCAGTCTCCCATCCTCGGAT 61.118 60.000 0.00 0.00 34.81 4.18
29 30 1.418334 CAGTCTCCCATCCTCGGATT 58.582 55.000 0.00 0.00 31.62 3.01
30 31 1.342819 CAGTCTCCCATCCTCGGATTC 59.657 57.143 0.00 0.00 31.62 2.52
31 32 1.219213 AGTCTCCCATCCTCGGATTCT 59.781 52.381 0.00 0.00 31.62 2.40
32 33 1.616374 GTCTCCCATCCTCGGATTCTC 59.384 57.143 0.00 0.00 31.62 2.87
33 34 1.217942 TCTCCCATCCTCGGATTCTCA 59.782 52.381 0.00 0.00 31.62 3.27
34 35 2.158249 TCTCCCATCCTCGGATTCTCAT 60.158 50.000 0.00 0.00 31.62 2.90
35 36 1.973515 TCCCATCCTCGGATTCTCATG 59.026 52.381 0.00 0.00 31.62 3.07
36 37 1.610102 CCCATCCTCGGATTCTCATGC 60.610 57.143 0.00 0.00 31.62 4.06
37 38 1.426423 CATCCTCGGATTCTCATGCG 58.574 55.000 0.00 0.00 45.15 4.73
43 44 2.726555 CGGATTCTCATGCGAAGTTG 57.273 50.000 4.23 0.00 46.64 3.16
44 45 1.267732 CGGATTCTCATGCGAAGTTGC 60.268 52.381 4.23 0.00 46.64 4.17
45 46 2.012673 GGATTCTCATGCGAAGTTGCT 58.987 47.619 4.23 0.00 35.36 3.91
46 47 2.031437 GGATTCTCATGCGAAGTTGCTC 59.969 50.000 4.23 0.00 35.36 4.26
47 48 1.442769 TTCTCATGCGAAGTTGCTCC 58.557 50.000 0.00 0.00 35.36 4.70
48 49 0.321346 TCTCATGCGAAGTTGCTCCA 59.679 50.000 0.00 0.00 35.36 3.86
49 50 0.725686 CTCATGCGAAGTTGCTCCAG 59.274 55.000 0.00 0.00 35.36 3.86
50 51 0.035317 TCATGCGAAGTTGCTCCAGT 59.965 50.000 0.00 0.00 35.36 4.00
51 52 1.275010 TCATGCGAAGTTGCTCCAGTA 59.725 47.619 0.00 0.00 35.36 2.74
52 53 1.394917 CATGCGAAGTTGCTCCAGTAC 59.605 52.381 0.00 0.00 35.36 2.73
53 54 0.666274 TGCGAAGTTGCTCCAGTACG 60.666 55.000 0.00 0.00 35.36 3.67
54 55 0.388134 GCGAAGTTGCTCCAGTACGA 60.388 55.000 0.00 0.00 0.00 3.43
55 56 1.933500 GCGAAGTTGCTCCAGTACGAA 60.934 52.381 0.00 0.00 0.00 3.85
56 57 1.986378 CGAAGTTGCTCCAGTACGAAG 59.014 52.381 0.00 0.00 0.00 3.79
57 58 2.351447 CGAAGTTGCTCCAGTACGAAGA 60.351 50.000 0.00 0.00 0.00 2.87
58 59 2.726832 AGTTGCTCCAGTACGAAGAC 57.273 50.000 0.00 0.00 0.00 3.01
59 60 2.240279 AGTTGCTCCAGTACGAAGACT 58.760 47.619 0.00 0.00 0.00 3.24
60 61 2.029828 AGTTGCTCCAGTACGAAGACTG 60.030 50.000 9.09 9.09 45.43 3.51
127 128 3.442273 AGCGTCTCTTCTCTTGTCCTAAG 59.558 47.826 0.00 0.00 0.00 2.18
130 131 4.142556 CGTCTCTTCTCTTGTCCTAAGTCC 60.143 50.000 0.00 0.00 0.00 3.85
132 133 6.181908 GTCTCTTCTCTTGTCCTAAGTCCTA 58.818 44.000 0.00 0.00 0.00 2.94
133 134 6.660094 GTCTCTTCTCTTGTCCTAAGTCCTAA 59.340 42.308 0.00 0.00 0.00 2.69
137 138 4.942483 TCTCTTGTCCTAAGTCCTAACTCG 59.058 45.833 0.00 0.00 33.48 4.18
139 140 3.083122 TGTCCTAAGTCCTAACTCGCT 57.917 47.619 0.00 0.00 33.48 4.93
142 143 4.082354 TGTCCTAAGTCCTAACTCGCTTTC 60.082 45.833 0.00 0.00 33.48 2.62
145 146 3.596310 AAGTCCTAACTCGCTTTCCTC 57.404 47.619 0.00 0.00 33.48 3.71
237 238 4.165372 GGATGGGTTCCCTCACAAGTAATA 59.835 45.833 9.43 0.00 38.75 0.98
260 261 1.081092 CCCTCCTCAACCTCCTCCA 59.919 63.158 0.00 0.00 0.00 3.86
281 282 0.689080 TCCTCCTCATGCACCTCTCC 60.689 60.000 0.00 0.00 0.00 3.71
322 323 0.108186 TGGAACGCCATGCTCTGTAG 60.108 55.000 0.00 0.00 39.92 2.74
564 619 3.576004 CTGCACTTGGCTGCTCTC 58.424 61.111 0.00 0.00 45.15 3.20
567 622 2.386660 GCACTTGGCTGCTCTCGTC 61.387 63.158 0.00 0.00 40.25 4.20
577 632 1.290324 GCTCTCGTCTTCAGTGGCA 59.710 57.895 0.00 0.00 0.00 4.92
578 633 0.108424 GCTCTCGTCTTCAGTGGCAT 60.108 55.000 0.00 0.00 0.00 4.40
589 644 1.144708 TCAGTGGCATCTTGGGTTTGA 59.855 47.619 0.00 0.00 0.00 2.69
616 671 3.009115 GGCTGGGGCTGTGGAGTA 61.009 66.667 0.00 0.00 38.73 2.59
617 672 2.586792 GCTGGGGCTGTGGAGTAG 59.413 66.667 0.00 0.00 35.22 2.57
618 673 2.586792 CTGGGGCTGTGGAGTAGC 59.413 66.667 0.00 0.00 40.41 3.58
620 675 1.965754 CTGGGGCTGTGGAGTAGCTC 61.966 65.000 0.00 0.00 40.96 4.09
673 783 1.730547 CTTGCCGGCTTTGCTTTCG 60.731 57.895 29.70 1.14 0.00 3.46
698 808 2.434774 GCCTCGGTTTCTTGGGGT 59.565 61.111 0.00 0.00 0.00 4.95
712 822 2.668632 GGGTGGCATTCGTGAGGA 59.331 61.111 0.00 0.00 0.00 3.71
759 869 2.095252 GGCGTTCGTCTGCTCTTCC 61.095 63.158 0.00 0.00 0.00 3.46
768 878 0.318441 TCTGCTCTTCCTCGGTTGTG 59.682 55.000 0.00 0.00 0.00 3.33
787 897 0.457443 GGCTATTGTTGCAGGGAAGC 59.543 55.000 0.00 0.00 0.00 3.86
892 2792 0.749649 CGAAGAGGGTCATGGAGGAG 59.250 60.000 0.00 0.00 0.00 3.69
912 2812 4.038642 GGAGCTGGAAATGGTTTGTACAAA 59.961 41.667 17.01 17.01 0.00 2.83
981 2884 0.329596 AGATCACTCCCTTTGCCACC 59.670 55.000 0.00 0.00 0.00 4.61
1065 2968 1.376649 AGCCCCTTGAGGACAAAGAT 58.623 50.000 0.00 0.00 38.24 2.40
1074 2977 5.396772 CCTTGAGGACAAAGATATGCCACTA 60.397 44.000 0.00 0.00 37.39 2.74
1080 2983 6.330250 AGGACAAAGATATGCCACTATTAGGT 59.670 38.462 0.00 0.00 0.00 3.08
1096 2999 1.375908 GGTGCCACAGATCGAGCAA 60.376 57.895 2.38 0.00 36.91 3.91
1307 3210 1.064825 TCACTTGGGAAAGGGACCTC 58.935 55.000 0.00 0.00 0.00 3.85
1335 3238 2.202987 GGCTATGTGCTCGCTGCT 60.203 61.111 0.00 0.00 43.37 4.24
1347 3250 3.500299 TGCTCGCTGCTTTAATGTTTGTA 59.500 39.130 0.00 0.00 43.37 2.41
1358 3261 3.995412 AATGTTTGTATGCAAATGCGC 57.005 38.095 12.26 0.00 45.11 6.09
1476 3379 3.311871 AGAAGCTATCAAATGCAGCGAAG 59.688 43.478 0.00 0.00 40.29 3.79
1575 3478 4.241590 TCATCAAACATGGACAACAAGC 57.758 40.909 0.00 0.00 0.00 4.01
1692 3595 2.621998 CCTTCCATTGGCTAGATTGCAG 59.378 50.000 0.00 0.00 34.04 4.41
1916 3820 1.002773 TCTCCTACTTTGGTTTCGGCC 59.997 52.381 0.00 0.00 0.00 6.13
1952 3856 6.225981 ACATGCTATCTTTTGAAAATCCCC 57.774 37.500 0.00 0.00 0.00 4.81
2102 4006 3.054139 TCCTTGATGCACCTGAGCTAAAT 60.054 43.478 0.00 0.00 34.99 1.40
2112 4016 2.424956 CCTGAGCTAAATGGGCAAGTTC 59.575 50.000 0.00 0.00 0.00 3.01
2133 4037 2.808543 CGGAAGAAATACTATGCTGGCC 59.191 50.000 0.00 0.00 0.00 5.36
2386 4605 7.712639 TCTGCCATATTCAGAGTTTAGACATTC 59.287 37.037 1.35 0.00 35.81 2.67
2398 4617 8.263640 AGAGTTTAGACATTCAGACATGCTTAT 58.736 33.333 0.00 0.00 0.00 1.73
2506 5043 7.090173 ACAATATTTGCCAACATGAAGTACAC 58.910 34.615 0.00 0.00 0.00 2.90
2981 5540 8.492673 TCTTTGTTACAGGAATATGTCATGAC 57.507 34.615 19.27 19.27 40.61 3.06
3092 5651 7.169645 CACTTCGAAAAATTCACCATTTGATGT 59.830 33.333 0.00 0.00 35.09 3.06
3094 5653 7.405469 TCGAAAAATTCACCATTTGATGTTG 57.595 32.000 0.00 0.00 35.09 3.33
3098 5699 7.495135 AAAATTCACCATTTGATGTTGTTCC 57.505 32.000 0.00 0.00 35.09 3.62
3102 5703 5.875224 TCACCATTTGATGTTGTTCCTCTA 58.125 37.500 0.00 0.00 0.00 2.43
3371 6044 4.885907 CAGTTGGTATTCATGGAAGCAGAT 59.114 41.667 0.00 0.00 0.00 2.90
3372 6045 6.057533 CAGTTGGTATTCATGGAAGCAGATA 58.942 40.000 0.00 0.00 0.00 1.98
3373 6046 6.713903 CAGTTGGTATTCATGGAAGCAGATAT 59.286 38.462 0.00 0.00 0.00 1.63
3374 6047 6.713903 AGTTGGTATTCATGGAAGCAGATATG 59.286 38.462 0.00 0.00 0.00 1.78
3375 6048 6.191657 TGGTATTCATGGAAGCAGATATGT 57.808 37.500 0.00 0.00 0.00 2.29
3376 6049 6.233434 TGGTATTCATGGAAGCAGATATGTC 58.767 40.000 0.00 0.00 0.00 3.06
3484 6169 2.356665 TGCTTTACCTGTGCCAGAAA 57.643 45.000 4.00 0.00 32.44 2.52
3798 6483 2.811410 TCTTAGCCGGGTAAGAGTTCA 58.189 47.619 39.32 24.34 34.69 3.18
3813 6498 9.774742 GGTAAGAGTTCATAATCAAATGACAAC 57.225 33.333 0.00 0.00 35.63 3.32
4077 6766 4.820173 GCAGGTATGGGGTATAACTTTGTC 59.180 45.833 0.00 0.00 37.18 3.18
4134 6934 5.982465 TTTGCCTGCTATTGTTGTTTTTC 57.018 34.783 0.00 0.00 0.00 2.29
4175 6977 4.545823 ACTGAAACGTGTTATGTTGGTG 57.454 40.909 0.00 0.00 0.00 4.17
4442 7244 6.260936 CAGTTCTTTCTTCTTCTGCCTTTGTA 59.739 38.462 0.00 0.00 0.00 2.41
4527 7330 5.564048 TTTGCGGGTTATATAAACACCAC 57.436 39.130 12.50 3.66 31.50 4.16
4654 7458 4.917385 TGCTACCTTTTCATTGCCTTCTA 58.083 39.130 0.00 0.00 0.00 2.10
4664 7468 1.808411 TTGCCTTCTAGCCGAGTTTG 58.192 50.000 0.00 0.00 0.00 2.93
4774 8089 6.898912 ACTTATTAAGCCGTTACTTACTGC 57.101 37.500 3.28 0.00 37.26 4.40
4776 8091 6.534079 ACTTATTAAGCCGTTACTTACTGCTG 59.466 38.462 3.28 0.00 45.22 4.41
4777 8092 2.833631 AAGCCGTTACTTACTGCTGT 57.166 45.000 0.66 0.66 45.22 4.40
4778 8093 3.947910 AAGCCGTTACTTACTGCTGTA 57.052 42.857 0.00 0.00 45.22 2.74
4779 8094 4.467198 AAGCCGTTACTTACTGCTGTAT 57.533 40.909 4.12 0.00 45.22 2.29
4780 8095 3.782046 AGCCGTTACTTACTGCTGTATG 58.218 45.455 13.07 13.07 44.42 2.39
4781 8096 3.194968 AGCCGTTACTTACTGCTGTATGT 59.805 43.478 20.78 20.78 44.42 2.29
4782 8097 4.400251 AGCCGTTACTTACTGCTGTATGTA 59.600 41.667 19.20 19.20 44.42 2.29
4783 8098 5.068723 AGCCGTTACTTACTGCTGTATGTAT 59.931 40.000 21.94 10.30 44.42 2.29
4784 8099 6.263842 AGCCGTTACTTACTGCTGTATGTATA 59.736 38.462 21.94 14.00 44.42 1.47
4785 8100 6.919662 GCCGTTACTTACTGCTGTATGTATAA 59.080 38.462 21.94 12.58 38.34 0.98
4786 8101 7.597743 GCCGTTACTTACTGCTGTATGTATAAT 59.402 37.037 21.94 6.28 38.34 1.28
4787 8102 9.125906 CCGTTACTTACTGCTGTATGTATAATC 57.874 37.037 21.94 14.68 38.34 1.75
4879 8234 4.914177 ATTTTGACCTTGCCAATCCAAT 57.086 36.364 0.00 0.00 0.00 3.16
5043 9200 2.502142 TCTCAGGCTACCACGTTCTA 57.498 50.000 0.00 0.00 0.00 2.10
5049 9206 5.839621 TCAGGCTACCACGTTCTAAATATC 58.160 41.667 0.00 0.00 0.00 1.63
5142 9300 2.412847 GCTTATGTGCCGTTGTCAACTC 60.413 50.000 13.67 6.10 0.00 3.01
5607 9817 2.498481 TGGTATAGTTGGTCGAACAGGG 59.502 50.000 2.09 0.00 36.98 4.45
5631 9841 1.408422 GCAAGACAACGTTGATTGGC 58.592 50.000 33.66 23.70 37.93 4.52
5802 10012 2.848694 TGATCCTCTTGGGCAATTCTCT 59.151 45.455 0.00 0.00 34.39 3.10
5827 10037 7.638444 TGATCAACAAATATGGGAGGTAAGAA 58.362 34.615 0.00 0.00 0.00 2.52
5882 10612 0.830648 CAACCGAGCCCCATCTCTTA 59.169 55.000 0.00 0.00 0.00 2.10
5892 10622 7.611855 CCGAGCCCCATCTCTTATTTTATTATT 59.388 37.037 0.00 0.00 0.00 1.40
5968 11109 3.641434 ACTATGCTGCAGGTTCTTGAT 57.359 42.857 17.12 0.00 0.00 2.57
6036 11177 4.580580 GGATTCACATGGTAGGAAACATCC 59.419 45.833 0.00 0.00 0.00 3.51
6072 11214 7.041721 ACTTTGGTTTCTGGAGTTCATTTTTC 58.958 34.615 0.00 0.00 0.00 2.29
6073 11215 6.790232 TTGGTTTCTGGAGTTCATTTTTCT 57.210 33.333 0.00 0.00 0.00 2.52
6078 11220 9.764363 GGTTTCTGGAGTTCATTTTTCTAAAAT 57.236 29.630 0.00 0.00 0.00 1.82
6171 11318 7.885297 ACATGTGCAGTAAATATGTCAAACTT 58.115 30.769 0.00 0.00 0.00 2.66
6521 11712 2.333926 CGACGGTATGTTTCTCTTGCA 58.666 47.619 0.00 0.00 0.00 4.08
6522 11713 2.930040 CGACGGTATGTTTCTCTTGCAT 59.070 45.455 0.00 0.00 0.00 3.96
6646 11979 5.163550 GGAGTTTGACAAACCTACAAAGCTT 60.164 40.000 24.09 0.00 42.34 3.74
6667 12000 5.526846 GCTTATGGAAACTGAAGGATCTCTG 59.473 44.000 0.00 0.00 0.00 3.35
6721 12054 7.600752 TCACACACATCGAACACAGATATTTAA 59.399 33.333 0.00 0.00 0.00 1.52
6725 12058 8.450964 ACACATCGAACACAGATATTTAAAAGG 58.549 33.333 0.00 0.00 0.00 3.11
6822 12156 4.202441 GGAAAAGAGATATGCTTGCCTCA 58.798 43.478 0.00 0.00 0.00 3.86
6909 12247 1.066286 AGAGAAGACAGTGCCATCTGC 60.066 52.381 0.00 0.00 38.84 4.26
7004 12369 4.937201 TTCTGAAGCTGAACAGAGTACA 57.063 40.909 14.84 2.74 42.72 2.90
7020 12385 6.047870 CAGAGTACATCCTGAAGATTTCCTG 58.952 44.000 0.00 0.00 30.59 3.86
7021 12386 5.960811 AGAGTACATCCTGAAGATTTCCTGA 59.039 40.000 0.00 0.00 30.59 3.86
7022 12387 6.441924 AGAGTACATCCTGAAGATTTCCTGAA 59.558 38.462 0.00 0.00 30.59 3.02
7023 12388 6.648192 AGTACATCCTGAAGATTTCCTGAAG 58.352 40.000 0.00 0.00 30.59 3.02
7026 12391 4.559862 TCCTGAAGATTTCCTGAAGACC 57.440 45.455 0.00 0.00 0.00 3.85
7027 12392 3.055819 TCCTGAAGATTTCCTGAAGACCG 60.056 47.826 0.00 0.00 0.00 4.79
7029 12394 1.661112 GAAGATTTCCTGAAGACCGCG 59.339 52.381 0.00 0.00 0.00 6.46
7030 12395 0.741221 AGATTTCCTGAAGACCGCGC 60.741 55.000 0.00 0.00 0.00 6.86
7031 12396 0.741221 GATTTCCTGAAGACCGCGCT 60.741 55.000 5.56 0.00 0.00 5.92
7032 12397 1.021390 ATTTCCTGAAGACCGCGCTG 61.021 55.000 5.56 0.00 0.00 5.18
7033 12398 2.094757 TTTCCTGAAGACCGCGCTGA 62.095 55.000 5.61 0.00 0.00 4.26
7034 12399 1.888436 TTCCTGAAGACCGCGCTGAT 61.888 55.000 5.61 0.00 0.00 2.90
7037 12420 1.144565 CTGAAGACCGCGCTGATCAG 61.145 60.000 18.84 18.84 0.00 2.90
7058 12441 2.159324 GCAGACAGCAGGGCTATTTTTC 60.159 50.000 0.00 0.00 44.79 2.29
7060 12443 3.760684 CAGACAGCAGGGCTATTTTTCTT 59.239 43.478 0.00 0.00 36.40 2.52
7061 12444 4.219288 CAGACAGCAGGGCTATTTTTCTTT 59.781 41.667 0.00 0.00 36.40 2.52
7062 12445 4.219288 AGACAGCAGGGCTATTTTTCTTTG 59.781 41.667 0.00 0.00 36.40 2.77
7063 12446 3.256558 CAGCAGGGCTATTTTTCTTTGC 58.743 45.455 0.00 0.00 36.40 3.68
7064 12447 3.056322 CAGCAGGGCTATTTTTCTTTGCT 60.056 43.478 0.00 0.00 40.94 3.91
7065 12448 3.056322 AGCAGGGCTATTTTTCTTTGCTG 60.056 43.478 0.00 0.00 39.02 4.41
7098 12481 3.294214 CAAGGCTAAATGGGAGCTCATT 58.706 45.455 17.19 5.37 39.98 2.57
7099 12482 3.220674 AGGCTAAATGGGAGCTCATTC 57.779 47.619 17.19 5.04 39.98 2.67
7100 12483 2.511218 AGGCTAAATGGGAGCTCATTCA 59.489 45.455 17.19 10.88 39.98 2.57
7101 12484 3.139770 AGGCTAAATGGGAGCTCATTCAT 59.860 43.478 17.19 12.70 39.98 2.57
7165 12548 1.758122 CCTTAGGCCCATTGCACCC 60.758 63.158 0.00 0.00 43.89 4.61
7192 12575 4.262635 CCTGGGATACGACTTTGAGCATAT 60.263 45.833 0.00 0.00 37.60 1.78
7209 12592 5.104374 AGCATATGTGTTTGCTTACAATGC 58.896 37.500 4.29 14.01 46.71 3.56
7210 12593 5.104374 GCATATGTGTTTGCTTACAATGCT 58.896 37.500 4.29 0.00 37.77 3.79
7211 12594 6.095300 AGCATATGTGTTTGCTTACAATGCTA 59.905 34.615 19.03 2.68 46.71 3.49
7212 12595 6.919662 GCATATGTGTTTGCTTACAATGCTAT 59.080 34.615 4.29 1.74 37.77 2.97
7213 12596 7.096353 GCATATGTGTTTGCTTACAATGCTATG 60.096 37.037 4.29 10.28 37.77 2.23
7214 12597 5.058149 TGTGTTTGCTTACAATGCTATGG 57.942 39.130 0.00 0.00 35.21 2.74
7215 12598 4.522405 TGTGTTTGCTTACAATGCTATGGT 59.478 37.500 0.00 0.00 35.21 3.55
7243 12626 3.351020 TTTCTCGACTAGCTATTCGCC 57.649 47.619 24.16 0.00 40.39 5.54
7244 12627 1.236628 TCTCGACTAGCTATTCGCCC 58.763 55.000 24.16 0.00 40.39 6.13
7259 12642 1.298339 GCCCGCGCATCATTTGTAC 60.298 57.895 8.75 0.00 34.03 2.90
7281 12664 5.253330 ACTAGCTTGGCAGTTTTTATGCTA 58.747 37.500 0.00 0.00 43.35 3.49
7284 12667 5.230182 AGCTTGGCAGTTTTTATGCTAAAC 58.770 37.500 0.00 0.00 42.52 2.01
7288 12671 4.021544 TGGCAGTTTTTATGCTAAACCCAG 60.022 41.667 0.00 0.00 43.35 4.45
7328 12711 3.829886 TCATGCGATTGGTTTCAGTTC 57.170 42.857 0.00 0.00 0.00 3.01
7409 12792 6.132724 CGTGTTTATATTGCGATGCACATAA 58.867 36.000 0.00 0.00 38.71 1.90
7416 12799 7.818493 ATATTGCGATGCACATAAGTAGTAG 57.182 36.000 0.00 0.00 38.71 2.57
7442 14552 5.923733 TTGTTTTTGGTTGTACACTGGAT 57.076 34.783 0.00 0.00 0.00 3.41
7443 14553 5.255710 TGTTTTTGGTTGTACACTGGATG 57.744 39.130 0.00 0.00 0.00 3.51
7444 14554 4.950475 TGTTTTTGGTTGTACACTGGATGA 59.050 37.500 0.00 0.00 0.00 2.92
7445 14555 5.163602 TGTTTTTGGTTGTACACTGGATGAC 60.164 40.000 0.00 0.00 0.00 3.06
7446 14556 2.851263 TGGTTGTACACTGGATGACC 57.149 50.000 0.00 0.00 0.00 4.02
7447 14557 2.050918 TGGTTGTACACTGGATGACCA 58.949 47.619 8.86 8.86 44.76 4.02
7448 14558 2.439880 TGGTTGTACACTGGATGACCAA 59.560 45.455 10.23 0.00 46.32 3.67
7449 14559 3.117851 TGGTTGTACACTGGATGACCAAA 60.118 43.478 10.23 0.00 46.32 3.28
7450 14560 3.886505 GGTTGTACACTGGATGACCAAAA 59.113 43.478 0.00 0.00 46.32 2.44
7451 14561 4.339814 GGTTGTACACTGGATGACCAAAAA 59.660 41.667 0.00 0.00 46.32 1.94
7452 14562 5.507315 GGTTGTACACTGGATGACCAAAAAG 60.507 44.000 0.00 0.00 46.32 2.27
7453 14563 4.141287 TGTACACTGGATGACCAAAAAGG 58.859 43.478 0.00 0.00 46.32 3.11
7454 14564 1.963515 ACACTGGATGACCAAAAAGGC 59.036 47.619 0.00 0.00 46.32 4.35
7455 14565 2.242043 CACTGGATGACCAAAAAGGCT 58.758 47.619 0.00 0.00 46.32 4.58
7456 14566 2.629617 CACTGGATGACCAAAAAGGCTT 59.370 45.455 0.00 0.00 46.32 4.35
7457 14567 3.070015 CACTGGATGACCAAAAAGGCTTT 59.930 43.478 6.68 6.68 46.32 3.51
7458 14568 3.321968 ACTGGATGACCAAAAAGGCTTTC 59.678 43.478 13.76 0.53 46.32 2.62
7459 14569 2.295909 TGGATGACCAAAAAGGCTTTCG 59.704 45.455 13.76 7.62 43.91 3.46
7460 14570 2.328473 GATGACCAAAAAGGCTTTCGC 58.672 47.619 13.76 2.19 43.14 4.70
7470 14580 3.509659 GCTTTCGCCCCGCTTTAT 58.490 55.556 0.00 0.00 0.00 1.40
7471 14581 2.697819 GCTTTCGCCCCGCTTTATA 58.302 52.632 0.00 0.00 0.00 0.98
7472 14582 1.235724 GCTTTCGCCCCGCTTTATAT 58.764 50.000 0.00 0.00 0.00 0.86
7473 14583 2.419667 GCTTTCGCCCCGCTTTATATA 58.580 47.619 0.00 0.00 0.00 0.86
7474 14584 3.007635 GCTTTCGCCCCGCTTTATATAT 58.992 45.455 0.00 0.00 0.00 0.86
7475 14585 4.186159 GCTTTCGCCCCGCTTTATATATA 58.814 43.478 0.00 0.00 0.00 0.86
7476 14586 4.632688 GCTTTCGCCCCGCTTTATATATAA 59.367 41.667 0.81 0.81 0.00 0.98
7477 14587 5.122711 GCTTTCGCCCCGCTTTATATATAAA 59.877 40.000 15.47 15.47 0.00 1.40
7493 14603 2.666836 TAAAGCAAACCGTTGTACGC 57.333 45.000 0.00 0.00 40.91 4.42
7494 14604 1.018910 AAAGCAAACCGTTGTACGCT 58.981 45.000 0.00 0.00 40.91 5.07
7495 14605 0.306533 AAGCAAACCGTTGTACGCTG 59.693 50.000 0.00 0.00 40.91 5.18
7496 14606 1.082366 GCAAACCGTTGTACGCTGG 60.082 57.895 0.00 0.00 40.91 4.85
7497 14607 1.572447 CAAACCGTTGTACGCTGGG 59.428 57.895 0.00 0.00 40.91 4.45
7566 15281 1.089112 TCAGCAGGCATTCGATGTTG 58.911 50.000 0.00 0.00 0.00 3.33
7567 15282 1.089112 CAGCAGGCATTCGATGTTGA 58.911 50.000 0.00 0.00 0.00 3.18
7568 15283 1.063616 CAGCAGGCATTCGATGTTGAG 59.936 52.381 0.00 0.00 0.00 3.02
7569 15284 1.089920 GCAGGCATTCGATGTTGAGT 58.910 50.000 0.00 0.00 0.00 3.41
7598 15335 1.273838 TGCCCCCTCTTACTGAGATGT 60.274 52.381 0.00 0.00 45.39 3.06
7599 15336 1.139853 GCCCCCTCTTACTGAGATGTG 59.860 57.143 0.00 0.00 45.39 3.21
7625 15362 4.588951 TCACACACTCTCAAATAGACCTGT 59.411 41.667 0.00 0.00 0.00 4.00
7639 15394 1.820906 CCTGTGCATGGATGGGTCG 60.821 63.158 2.91 0.00 0.00 4.79
7640 15395 1.820906 CTGTGCATGGATGGGTCGG 60.821 63.158 0.00 0.00 0.00 4.79
7641 15396 2.516930 GTGCATGGATGGGTCGGG 60.517 66.667 0.00 0.00 0.00 5.14
7642 15397 4.504596 TGCATGGATGGGTCGGGC 62.505 66.667 0.00 0.00 0.00 6.13
7643 15398 4.195334 GCATGGATGGGTCGGGCT 62.195 66.667 0.00 0.00 0.00 5.19
7644 15399 2.203252 CATGGATGGGTCGGGCTG 60.203 66.667 0.00 0.00 0.00 4.85
7645 15400 3.492353 ATGGATGGGTCGGGCTGG 61.492 66.667 0.00 0.00 0.00 4.85
7648 15403 3.728373 GATGGGTCGGGCTGGGTT 61.728 66.667 0.00 0.00 0.00 4.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.833287 GGATGGGAGACTGCTAGCAA 59.167 55.000 19.86 1.64 0.00 3.91
4 5 0.031716 AGGATGGGAGACTGCTAGCA 60.032 55.000 18.22 18.22 0.00 3.49
5 6 0.678950 GAGGATGGGAGACTGCTAGC 59.321 60.000 8.10 8.10 0.00 3.42
6 7 0.958091 CGAGGATGGGAGACTGCTAG 59.042 60.000 0.00 0.00 0.00 3.42
7 8 0.468214 CCGAGGATGGGAGACTGCTA 60.468 60.000 0.00 0.00 35.02 3.49
8 9 1.760086 CCGAGGATGGGAGACTGCT 60.760 63.158 0.00 0.00 35.02 4.24
16 17 1.610102 GCATGAGAATCCGAGGATGGG 60.610 57.143 5.25 0.00 34.70 4.00
17 18 1.805869 GCATGAGAATCCGAGGATGG 58.194 55.000 5.25 0.00 34.70 3.51
18 19 1.000171 TCGCATGAGAATCCGAGGATG 60.000 52.381 5.25 0.00 34.70 3.51
19 20 1.332195 TCGCATGAGAATCCGAGGAT 58.668 50.000 0.00 0.00 36.23 3.24
20 21 1.067669 CTTCGCATGAGAATCCGAGGA 59.932 52.381 12.50 0.00 27.95 3.71
21 22 1.202463 ACTTCGCATGAGAATCCGAGG 60.202 52.381 12.50 5.62 31.73 4.63
22 23 2.215907 ACTTCGCATGAGAATCCGAG 57.784 50.000 12.50 3.06 28.73 4.63
23 24 2.270923 CAACTTCGCATGAGAATCCGA 58.729 47.619 12.50 0.00 0.00 4.55
24 25 1.267732 GCAACTTCGCATGAGAATCCG 60.268 52.381 12.50 4.02 0.00 4.18
25 26 2.012673 AGCAACTTCGCATGAGAATCC 58.987 47.619 12.50 2.10 0.00 3.01
26 27 2.031437 GGAGCAACTTCGCATGAGAATC 59.969 50.000 12.50 6.75 0.00 2.52
27 28 2.012673 GGAGCAACTTCGCATGAGAAT 58.987 47.619 12.50 0.00 0.00 2.40
28 29 1.270785 TGGAGCAACTTCGCATGAGAA 60.271 47.619 11.56 11.56 0.00 2.87
29 30 0.321346 TGGAGCAACTTCGCATGAGA 59.679 50.000 0.00 0.00 0.00 3.27
30 31 0.725686 CTGGAGCAACTTCGCATGAG 59.274 55.000 0.00 0.00 0.00 2.90
31 32 0.035317 ACTGGAGCAACTTCGCATGA 59.965 50.000 0.00 0.00 0.00 3.07
32 33 1.394917 GTACTGGAGCAACTTCGCATG 59.605 52.381 0.00 0.00 0.00 4.06
33 34 1.726853 GTACTGGAGCAACTTCGCAT 58.273 50.000 0.00 0.00 0.00 4.73
34 35 0.666274 CGTACTGGAGCAACTTCGCA 60.666 55.000 0.00 0.00 0.00 5.10
35 36 0.388134 TCGTACTGGAGCAACTTCGC 60.388 55.000 0.00 0.00 0.00 4.70
36 37 1.986378 CTTCGTACTGGAGCAACTTCG 59.014 52.381 0.00 0.00 0.00 3.79
37 38 2.987821 GTCTTCGTACTGGAGCAACTTC 59.012 50.000 0.00 0.00 0.00 3.01
38 39 2.628657 AGTCTTCGTACTGGAGCAACTT 59.371 45.455 0.00 0.00 0.00 2.66
39 40 2.029828 CAGTCTTCGTACTGGAGCAACT 60.030 50.000 7.23 0.00 42.63 3.16
40 41 2.030185 TCAGTCTTCGTACTGGAGCAAC 60.030 50.000 12.89 0.00 45.69 4.17
41 42 2.235891 TCAGTCTTCGTACTGGAGCAA 58.764 47.619 12.89 0.00 45.69 3.91
42 43 1.905637 TCAGTCTTCGTACTGGAGCA 58.094 50.000 12.89 0.00 45.69 4.26
43 44 3.512033 AATCAGTCTTCGTACTGGAGC 57.488 47.619 12.89 0.00 45.69 4.70
44 45 4.559251 CGAAAATCAGTCTTCGTACTGGAG 59.441 45.833 12.89 0.00 45.69 3.86
45 46 4.482386 CGAAAATCAGTCTTCGTACTGGA 58.518 43.478 12.89 3.96 45.69 3.86
46 47 4.824848 CGAAAATCAGTCTTCGTACTGG 57.175 45.455 12.89 0.00 45.69 4.00
53 54 8.594881 ACATATATGGACGAAAATCAGTCTTC 57.405 34.615 16.96 0.00 37.52 2.87
54 55 8.964476 AACATATATGGACGAAAATCAGTCTT 57.036 30.769 16.96 0.00 37.52 3.01
55 56 8.424918 AGAACATATATGGACGAAAATCAGTCT 58.575 33.333 16.96 0.00 37.52 3.24
56 57 8.594881 AGAACATATATGGACGAAAATCAGTC 57.405 34.615 16.96 0.00 36.70 3.51
57 58 8.424918 AGAGAACATATATGGACGAAAATCAGT 58.575 33.333 16.96 0.00 0.00 3.41
58 59 8.706936 CAGAGAACATATATGGACGAAAATCAG 58.293 37.037 16.96 0.00 0.00 2.90
59 60 8.204160 ACAGAGAACATATATGGACGAAAATCA 58.796 33.333 16.96 0.00 0.00 2.57
60 61 8.594881 ACAGAGAACATATATGGACGAAAATC 57.405 34.615 16.96 3.92 0.00 2.17
61 62 8.424918 AGACAGAGAACATATATGGACGAAAAT 58.575 33.333 16.96 0.00 0.00 1.82
73 74 4.961730 AGAAGGAGCAGACAGAGAACATAT 59.038 41.667 0.00 0.00 0.00 1.78
75 76 3.172339 AGAAGGAGCAGACAGAGAACAT 58.828 45.455 0.00 0.00 0.00 2.71
127 128 1.826096 AGGAGGAAAGCGAGTTAGGAC 59.174 52.381 0.00 0.00 0.00 3.85
130 131 3.193691 TGAAGAGGAGGAAAGCGAGTTAG 59.806 47.826 0.00 0.00 0.00 2.34
132 133 1.971357 TGAAGAGGAGGAAAGCGAGTT 59.029 47.619 0.00 0.00 0.00 3.01
133 134 1.633774 TGAAGAGGAGGAAAGCGAGT 58.366 50.000 0.00 0.00 0.00 4.18
137 138 1.387539 GCCATGAAGAGGAGGAAAGC 58.612 55.000 0.00 0.00 0.00 3.51
139 140 0.253044 CGGCCATGAAGAGGAGGAAA 59.747 55.000 2.24 0.00 0.00 3.13
142 143 2.507944 CCGGCCATGAAGAGGAGG 59.492 66.667 2.24 0.00 0.00 4.30
172 173 1.092345 GGATCAGCAGCTCCCGTTTC 61.092 60.000 0.00 0.00 0.00 2.78
173 174 1.078143 GGATCAGCAGCTCCCGTTT 60.078 57.895 0.00 0.00 0.00 3.60
174 175 2.293318 TGGATCAGCAGCTCCCGTT 61.293 57.895 0.00 0.00 0.00 4.44
237 238 1.203622 AGGAGGTTGAGGAGGGGATTT 60.204 52.381 0.00 0.00 0.00 2.17
260 261 0.042431 AGAGGTGCATGAGGAGGACT 59.958 55.000 0.00 0.00 0.00 3.85
281 282 0.813184 ATTTCAGTTGGCTGCCGATG 59.187 50.000 12.67 11.31 42.29 3.84
476 504 0.466007 TTTGACAAGCAGCTGGAGCA 60.466 50.000 17.12 0.00 45.16 4.26
477 505 0.670162 TTTTGACAAGCAGCTGGAGC 59.330 50.000 17.12 0.07 42.49 4.70
562 617 1.998315 CAAGATGCCACTGAAGACGAG 59.002 52.381 0.00 0.00 0.00 4.18
564 619 1.081892 CCAAGATGCCACTGAAGACG 58.918 55.000 0.00 0.00 0.00 4.18
567 622 1.915141 AACCCAAGATGCCACTGAAG 58.085 50.000 0.00 0.00 0.00 3.02
577 632 3.307480 CCGAGGTAAGTCAAACCCAAGAT 60.307 47.826 0.00 0.00 37.77 2.40
578 633 2.038033 CCGAGGTAAGTCAAACCCAAGA 59.962 50.000 0.00 0.00 37.77 3.02
589 644 2.687566 CCCCAGCCCGAGGTAAGT 60.688 66.667 0.00 0.00 0.00 2.24
614 669 6.283694 TGAGATAATGTGACAATGGAGCTAC 58.716 40.000 0.00 0.00 0.00 3.58
615 670 6.463472 CCTGAGATAATGTGACAATGGAGCTA 60.463 42.308 0.00 0.00 0.00 3.32
616 671 5.363562 TGAGATAATGTGACAATGGAGCT 57.636 39.130 0.00 0.00 0.00 4.09
617 672 4.514441 CCTGAGATAATGTGACAATGGAGC 59.486 45.833 0.00 0.00 0.00 4.70
618 673 5.061853 CCCTGAGATAATGTGACAATGGAG 58.938 45.833 0.00 0.00 0.00 3.86
620 675 4.818546 GTCCCTGAGATAATGTGACAATGG 59.181 45.833 0.00 0.00 0.00 3.16
621 676 5.526479 CAGTCCCTGAGATAATGTGACAATG 59.474 44.000 0.00 0.00 32.44 2.82
698 808 1.462616 CCAAATCCTCACGAATGCCA 58.537 50.000 0.00 0.00 0.00 4.92
712 822 3.384532 CAGCAAGGCCGGCCAAAT 61.385 61.111 45.13 28.71 38.92 2.32
759 869 1.135689 GCAACAATAGCCACAACCGAG 60.136 52.381 0.00 0.00 0.00 4.63
768 878 0.457443 GCTTCCCTGCAACAATAGCC 59.543 55.000 0.00 0.00 0.00 3.93
787 897 0.742281 CAGCCCTTGACGGTGATCAG 60.742 60.000 0.00 0.00 0.00 2.90
912 2812 1.458777 TGTCTCCGTGTTGAGGGGT 60.459 57.895 0.00 0.00 33.04 4.95
1074 2977 1.202580 GCTCGATCTGTGGCACCTAAT 60.203 52.381 16.26 5.68 0.00 1.73
1080 2983 0.321346 TCTTTGCTCGATCTGTGGCA 59.679 50.000 0.00 0.00 0.00 4.92
1096 2999 5.707298 CCATGAACATCAAGTACTGGTTCTT 59.293 40.000 20.88 15.63 38.82 2.52
1347 3250 0.526096 GTGATTCGGCGCATTTGCAT 60.526 50.000 10.83 0.00 42.21 3.96
1358 3261 2.600731 GTCTCTGTGACAGTGATTCGG 58.399 52.381 18.78 0.88 44.73 4.30
1476 3379 4.543590 TTCTCCAGAAGAGTGAATCACC 57.456 45.455 10.12 1.81 43.71 4.02
1481 3384 8.378565 AGTTCATAATTTCTCCAGAAGAGTGAA 58.621 33.333 0.00 0.00 43.71 3.18
1575 3478 1.937196 GCGCAATGCAAAGCTGAACG 61.937 55.000 5.91 0.00 45.45 3.95
1692 3595 8.296713 TCCATAAGTTTACTCTGAAATTTGTGC 58.703 33.333 0.00 0.00 30.70 4.57
1916 3820 0.796312 AGCATGTTACAAAGGTCGCG 59.204 50.000 0.00 0.00 0.00 5.87
1952 3856 5.278169 GGTGAATACATTGCTAGCATCAAGG 60.278 44.000 20.13 8.21 0.00 3.61
2102 4006 2.286365 ATTTCTTCCGAACTTGCCCA 57.714 45.000 0.00 0.00 0.00 5.36
2112 4016 2.808543 GGCCAGCATAGTATTTCTTCCG 59.191 50.000 0.00 0.00 0.00 4.30
2128 4032 3.617531 CGCTATAGGGTAATCAAGGCCAG 60.618 52.174 5.01 0.00 0.00 4.85
2133 4037 7.009631 CGAATTCATCGCTATAGGGTAATCAAG 59.990 40.741 15.71 6.84 45.89 3.02
2210 4120 3.149196 TCCAGCTTTGACCAACAGATTC 58.851 45.455 0.00 0.00 0.00 2.52
2386 4605 7.443575 AGGCTATGTTTCTTATAAGCATGTCTG 59.556 37.037 7.67 0.00 0.00 3.51
2426 4645 5.912396 TCGAACATAACAACTTTGAACATGC 59.088 36.000 0.00 0.00 0.00 4.06
2558 5099 6.635641 CGCATATCTGGATCTGAAATGTTTTG 59.364 38.462 0.00 0.00 0.00 2.44
2981 5540 4.717233 ACAGTCTTGTCTGATAGAGCAG 57.283 45.455 2.23 0.00 38.63 4.24
3116 5787 9.988815 ACAAACAAAATGCCAGTTACATATAAA 57.011 25.926 0.00 0.00 0.00 1.40
3117 5788 9.988815 AACAAACAAAATGCCAGTTACATATAA 57.011 25.926 0.00 0.00 0.00 0.98
3118 5789 9.988815 AAACAAACAAAATGCCAGTTACATATA 57.011 25.926 0.00 0.00 0.00 0.86
3119 5790 8.772705 CAAACAAACAAAATGCCAGTTACATAT 58.227 29.630 0.00 0.00 0.00 1.78
3120 5791 7.766278 ACAAACAAACAAAATGCCAGTTACATA 59.234 29.630 0.00 0.00 0.00 2.29
3121 5792 6.597280 ACAAACAAACAAAATGCCAGTTACAT 59.403 30.769 0.00 0.00 0.00 2.29
3122 5793 5.934625 ACAAACAAACAAAATGCCAGTTACA 59.065 32.000 0.00 0.00 0.00 2.41
3123 5794 6.415798 ACAAACAAACAAAATGCCAGTTAC 57.584 33.333 0.00 0.00 0.00 2.50
3124 5795 6.650807 TCAACAAACAAACAAAATGCCAGTTA 59.349 30.769 0.00 0.00 0.00 2.24
3125 5796 5.471456 TCAACAAACAAACAAAATGCCAGTT 59.529 32.000 0.00 0.00 0.00 3.16
3126 5797 4.999950 TCAACAAACAAACAAAATGCCAGT 59.000 33.333 0.00 0.00 0.00 4.00
3127 5798 5.542616 TCAACAAACAAACAAAATGCCAG 57.457 34.783 0.00 0.00 0.00 4.85
3128 5799 5.413833 ACATCAACAAACAAACAAAATGCCA 59.586 32.000 0.00 0.00 0.00 4.92
3129 5800 5.878133 ACATCAACAAACAAACAAAATGCC 58.122 33.333 0.00 0.00 0.00 4.40
3130 5801 6.541086 TGACATCAACAAACAAACAAAATGC 58.459 32.000 0.00 0.00 0.00 3.56
3131 5802 8.605746 AGATGACATCAACAAACAAACAAAATG 58.394 29.630 17.57 0.00 0.00 2.32
3132 5803 8.721019 AGATGACATCAACAAACAAACAAAAT 57.279 26.923 17.57 0.00 0.00 1.82
3133 5804 9.645059 TTAGATGACATCAACAAACAAACAAAA 57.355 25.926 17.57 0.00 0.00 2.44
3289 5962 6.590292 AGTGTGTGTTGTTATTAAGATCCGAG 59.410 38.462 0.00 0.00 0.00 4.63
3371 6044 6.263392 GGCTTCACAGACTCTGTATAGACATA 59.737 42.308 11.47 0.00 43.43 2.29
3372 6045 5.068460 GGCTTCACAGACTCTGTATAGACAT 59.932 44.000 11.47 0.00 43.43 3.06
3373 6046 4.399618 GGCTTCACAGACTCTGTATAGACA 59.600 45.833 11.47 0.00 43.43 3.41
3374 6047 4.399618 TGGCTTCACAGACTCTGTATAGAC 59.600 45.833 11.47 13.36 43.43 2.59
3375 6048 4.600062 TGGCTTCACAGACTCTGTATAGA 58.400 43.478 11.47 2.75 43.43 1.98
3376 6049 4.991153 TGGCTTCACAGACTCTGTATAG 57.009 45.455 11.47 12.02 43.43 1.31
3484 6169 4.936685 AGAGAAATACAGGAGGCCTTTT 57.063 40.909 6.77 1.13 0.00 2.27
3630 6315 5.067674 AGCAAGAAGAACATTGTGCAAACTA 59.932 36.000 0.00 0.00 34.44 2.24
4116 6805 7.081349 TGAATACGAAAAACAACAATAGCAGG 58.919 34.615 0.00 0.00 0.00 4.85
4162 6963 3.127548 CCTCTGCATCACCAACATAACAC 59.872 47.826 0.00 0.00 0.00 3.32
4175 6977 4.340617 AGGCTAGATAGTACCTCTGCATC 58.659 47.826 0.00 0.00 0.00 3.91
4442 7244 2.025510 CCCTTGAGGAAGAAGAGCCATT 60.026 50.000 0.00 0.00 38.24 3.16
4469 7271 7.230510 TGTTTATATAATTGCTTACCAGGGCTG 59.769 37.037 0.00 0.00 0.00 4.85
4527 7330 7.867445 ATTTTGTCCAGTATTTAAAGCAACG 57.133 32.000 0.00 0.00 0.00 4.10
4563 7367 2.547855 CCATCGATGGCCATAGAACGAA 60.548 50.000 30.53 13.84 41.75 3.85
4654 7458 0.179018 AAGCTTGTCCAAACTCGGCT 60.179 50.000 0.00 0.00 0.00 5.52
4664 7468 5.587289 TGTTGTCATAACAAAAGCTTGTCC 58.413 37.500 0.00 0.00 46.56 4.02
4698 7590 3.895656 TCATCTATTTACGAGTGGAGGGG 59.104 47.826 0.00 0.00 0.00 4.79
4964 8982 4.628333 GCAGAACACGGCAAGTATAACTTA 59.372 41.667 0.00 0.00 36.03 2.24
4967 8985 2.095372 GGCAGAACACGGCAAGTATAAC 59.905 50.000 0.00 0.00 0.00 1.89
5043 9200 8.573885 CATCAGAACATGGCAAGTATGATATTT 58.426 33.333 17.64 1.50 29.58 1.40
5049 9206 6.387041 AATCATCAGAACATGGCAAGTATG 57.613 37.500 0.00 0.00 0.00 2.39
5105 9263 7.926555 GGCACATAAGCATTAAGACTAGAACTA 59.073 37.037 0.00 0.00 32.17 2.24
5116 9274 3.753797 TGACAACGGCACATAAGCATTAA 59.246 39.130 0.00 0.00 32.17 1.40
5179 9368 7.286087 TGTGCAGATATGAAAGCAAGGAAATAT 59.714 33.333 0.00 0.00 38.91 1.28
5454 9650 3.882888 TGTTCACAGGATTTCACCTTGTC 59.117 43.478 0.00 0.00 38.32 3.18
5462 9658 6.861065 TGTTAGAAGTGTTCACAGGATTTC 57.139 37.500 5.74 0.74 0.00 2.17
5607 9817 1.295792 TCAACGTTGTCTTGCCACTC 58.704 50.000 26.47 0.00 0.00 3.51
5631 9841 0.777631 CAACAAGGCGAAACAATGCG 59.222 50.000 0.00 0.00 0.00 4.73
5679 9889 5.183331 GCCTATCGTACTGATATCCACAGAA 59.817 44.000 0.00 0.00 38.85 3.02
5802 10012 7.206789 TCTTACCTCCCATATTTGTTGATCA 57.793 36.000 0.00 0.00 0.00 2.92
5827 10037 4.100189 GCTGTACACTCCTACCAAGATCAT 59.900 45.833 0.00 0.00 0.00 2.45
5921 10651 1.067354 AGTAACCACTTTAGCGACCCG 60.067 52.381 0.00 0.00 0.00 5.28
5922 10652 2.614779 GAGTAACCACTTTAGCGACCC 58.385 52.381 0.00 0.00 34.21 4.46
5923 10653 2.028748 TGGAGTAACCACTTTAGCGACC 60.029 50.000 0.00 0.00 44.64 4.79
6036 11177 9.277783 CTCCAGAAACCAAAGTATATATGAAGG 57.722 37.037 0.00 0.00 0.00 3.46
6098 11240 7.619050 TCTGAGATGATTAGAGCAGAGTTTTT 58.381 34.615 0.00 0.00 0.00 1.94
6171 11318 7.771927 AGCTAATACGCCTAGGACTATTAAA 57.228 36.000 14.75 0.00 0.00 1.52
6253 11444 5.872617 CGTCTTCCACAACTATTATGACCAA 59.127 40.000 0.00 0.00 0.00 3.67
6550 11826 3.504863 CACAGCACATTTGGCATTCTAC 58.495 45.455 0.00 0.00 0.00 2.59
6646 11979 6.627087 AACAGAGATCCTTCAGTTTCCATA 57.373 37.500 0.00 0.00 0.00 2.74
6667 12000 1.493311 CTCGACCAGCTTGCGAAAC 59.507 57.895 4.22 0.00 33.26 2.78
6721 12054 5.165961 TGAAATCGACAATCTCTCCCTTT 57.834 39.130 0.00 0.00 0.00 3.11
6725 12058 6.428385 ACAAATGAAATCGACAATCTCTCC 57.572 37.500 0.00 0.00 0.00 3.71
6794 12128 5.809051 GCAAGCATATCTCTTTTCCAAAAGG 59.191 40.000 11.09 3.76 44.22 3.11
6795 12129 5.809051 GGCAAGCATATCTCTTTTCCAAAAG 59.191 40.000 5.56 5.56 45.17 2.27
6796 12130 5.481473 AGGCAAGCATATCTCTTTTCCAAAA 59.519 36.000 0.00 0.00 0.00 2.44
6797 12131 5.018809 AGGCAAGCATATCTCTTTTCCAAA 58.981 37.500 0.00 0.00 0.00 3.28
6798 12132 4.603131 AGGCAAGCATATCTCTTTTCCAA 58.397 39.130 0.00 0.00 0.00 3.53
6799 12133 4.202441 GAGGCAAGCATATCTCTTTTCCA 58.798 43.478 0.00 0.00 0.00 3.53
6800 12134 4.202441 TGAGGCAAGCATATCTCTTTTCC 58.798 43.478 0.00 0.00 0.00 3.13
6909 12247 9.760660 CAAAAGAAATATTAAGACGAGAACTGG 57.239 33.333 0.00 0.00 0.00 4.00
6975 12313 4.769688 TGTTCAGCTTCAGAAACTCTTCA 58.230 39.130 0.00 0.00 33.64 3.02
7004 12369 4.383552 CGGTCTTCAGGAAATCTTCAGGAT 60.384 45.833 0.00 0.00 35.97 3.24
7020 12385 2.520904 GCTGATCAGCGCGGTCTTC 61.521 63.158 30.64 9.06 45.29 2.87
7021 12386 2.510238 GCTGATCAGCGCGGTCTT 60.510 61.111 30.64 0.00 45.29 3.01
7030 12395 0.462225 CCCTGCTGTCTGCTGATCAG 60.462 60.000 18.84 18.84 42.27 2.90
7031 12396 1.600638 CCCTGCTGTCTGCTGATCA 59.399 57.895 9.70 0.00 42.27 2.92
7032 12397 1.818785 GCCCTGCTGTCTGCTGATC 60.819 63.158 9.70 0.00 42.27 2.92
7033 12398 0.979709 TAGCCCTGCTGTCTGCTGAT 60.980 55.000 9.70 0.00 42.27 2.90
7034 12399 0.979709 ATAGCCCTGCTGTCTGCTGA 60.980 55.000 9.70 0.00 42.27 4.26
7037 12420 1.467920 AAAATAGCCCTGCTGTCTGC 58.532 50.000 0.00 0.00 40.10 4.26
7039 12422 3.728385 AGAAAAATAGCCCTGCTGTCT 57.272 42.857 0.00 0.00 40.10 3.41
7041 12424 3.306294 GCAAAGAAAAATAGCCCTGCTGT 60.306 43.478 0.00 0.00 40.10 4.40
7063 12446 0.170561 GCCTTGCTGATGTTGCTCAG 59.829 55.000 0.00 0.00 44.51 3.35
7064 12447 0.251033 AGCCTTGCTGATGTTGCTCA 60.251 50.000 0.00 0.00 37.57 4.26
7065 12448 1.742761 TAGCCTTGCTGATGTTGCTC 58.257 50.000 0.00 0.00 40.10 4.26
7098 12481 5.123227 GCAGTTACCTTGCCAATACTATGA 58.877 41.667 0.00 0.00 35.54 2.15
7099 12482 4.881273 TGCAGTTACCTTGCCAATACTATG 59.119 41.667 0.00 0.00 40.81 2.23
7100 12483 5.110814 TGCAGTTACCTTGCCAATACTAT 57.889 39.130 0.00 0.00 40.81 2.12
7101 12484 4.513442 CTGCAGTTACCTTGCCAATACTA 58.487 43.478 5.25 0.00 40.81 1.82
7165 12548 0.541863 AAAGTCGTATCCCAGGCAGG 59.458 55.000 0.00 0.00 37.03 4.85
7192 12575 4.522405 ACCATAGCATTGTAAGCAAACACA 59.478 37.500 0.00 0.00 38.21 3.72
7202 12585 9.547753 GAGAAAAGATTCTACCATAGCATTGTA 57.452 33.333 0.00 0.00 45.91 2.41
7203 12586 7.225538 CGAGAAAAGATTCTACCATAGCATTGT 59.774 37.037 0.00 0.00 45.91 2.71
7204 12587 7.439356 TCGAGAAAAGATTCTACCATAGCATTG 59.561 37.037 0.00 0.00 45.91 2.82
7205 12588 7.439655 GTCGAGAAAAGATTCTACCATAGCATT 59.560 37.037 0.00 0.00 45.91 3.56
7206 12589 6.926272 GTCGAGAAAAGATTCTACCATAGCAT 59.074 38.462 0.00 0.00 45.91 3.79
7207 12590 6.096987 AGTCGAGAAAAGATTCTACCATAGCA 59.903 38.462 0.00 0.00 45.91 3.49
7208 12591 6.508777 AGTCGAGAAAAGATTCTACCATAGC 58.491 40.000 0.00 0.00 45.91 2.97
7209 12592 7.806014 GCTAGTCGAGAAAAGATTCTACCATAG 59.194 40.741 0.00 0.00 45.91 2.23
7210 12593 7.502895 AGCTAGTCGAGAAAAGATTCTACCATA 59.497 37.037 0.00 0.00 45.91 2.74
7211 12594 6.322712 AGCTAGTCGAGAAAAGATTCTACCAT 59.677 38.462 0.00 0.00 45.91 3.55
7212 12595 5.652891 AGCTAGTCGAGAAAAGATTCTACCA 59.347 40.000 0.00 0.00 45.91 3.25
7213 12596 6.139048 AGCTAGTCGAGAAAAGATTCTACC 57.861 41.667 0.00 0.00 45.91 3.18
7214 12597 9.389570 GAATAGCTAGTCGAGAAAAGATTCTAC 57.610 37.037 5.30 0.00 45.91 2.59
7215 12598 8.283992 CGAATAGCTAGTCGAGAAAAGATTCTA 58.716 37.037 33.44 0.00 45.91 2.10
7243 12626 1.070577 GCTAGTACAAATGATGCGCGG 60.071 52.381 8.83 0.00 0.00 6.46
7244 12627 1.860950 AGCTAGTACAAATGATGCGCG 59.139 47.619 0.00 0.00 0.00 6.86
7259 12642 4.708726 AGCATAAAAACTGCCAAGCTAG 57.291 40.909 0.00 0.00 40.56 3.42
7281 12664 7.238710 ACCTCATTTATAAAGTCACTGGGTTT 58.761 34.615 3.94 0.00 0.00 3.27
7284 12667 7.393234 TGAAACCTCATTTATAAAGTCACTGGG 59.607 37.037 3.94 0.00 0.00 4.45
7288 12671 7.429340 CGCATGAAACCTCATTTATAAAGTCAC 59.571 37.037 3.94 0.00 40.49 3.67
7328 12711 5.580691 TGGAGAAATACATCAAAGCGTACAG 59.419 40.000 0.00 0.00 0.00 2.74
7416 12799 7.259161 TCCAGTGTACAACCAAAAACAAATAC 58.741 34.615 0.00 0.00 0.00 1.89
7430 14540 4.582656 CCTTTTTGGTCATCCAGTGTACAA 59.417 41.667 0.00 0.00 45.22 2.41
7454 14564 6.730960 TTTATATATAAAGCGGGGCGAAAG 57.269 37.500 12.90 0.00 0.00 2.62
7455 14565 6.730960 CTTTATATATAAAGCGGGGCGAAA 57.269 37.500 25.10 1.66 41.69 3.46
7467 14577 8.274939 GCGTACAACGGTTTGCTTTATATATAA 58.725 33.333 0.81 0.81 42.82 0.98
7468 14578 7.786114 GCGTACAACGGTTTGCTTTATATATA 58.214 34.615 1.25 0.00 42.82 0.86
7469 14579 6.652245 GCGTACAACGGTTTGCTTTATATAT 58.348 36.000 1.25 0.00 42.82 0.86
7470 14580 6.035070 GCGTACAACGGTTTGCTTTATATA 57.965 37.500 1.25 0.00 42.82 0.86
7471 14581 4.900664 GCGTACAACGGTTTGCTTTATAT 58.099 39.130 1.25 0.00 42.82 0.86
7472 14582 4.324974 GCGTACAACGGTTTGCTTTATA 57.675 40.909 1.25 0.00 42.82 0.98
7473 14583 3.191735 GCGTACAACGGTTTGCTTTAT 57.808 42.857 1.25 0.00 42.82 1.40
7474 14584 2.666836 GCGTACAACGGTTTGCTTTA 57.333 45.000 1.25 0.00 42.82 1.85
7475 14585 3.537471 GCGTACAACGGTTTGCTTT 57.463 47.368 1.25 0.00 42.82 3.51
7483 14593 2.582728 TTATACCCAGCGTACAACGG 57.417 50.000 1.25 0.00 42.82 4.44
7484 14594 2.283351 GCTTTATACCCAGCGTACAACG 59.717 50.000 0.00 0.00 45.88 4.10
7485 14595 3.264104 TGCTTTATACCCAGCGTACAAC 58.736 45.455 0.00 0.00 39.04 3.32
7486 14596 3.613494 TGCTTTATACCCAGCGTACAA 57.387 42.857 0.00 0.00 39.04 2.41
7487 14597 3.830744 ATGCTTTATACCCAGCGTACA 57.169 42.857 0.00 0.00 39.04 2.90
7488 14598 3.875134 ACAATGCTTTATACCCAGCGTAC 59.125 43.478 0.00 0.00 39.04 3.67
7489 14599 4.145365 ACAATGCTTTATACCCAGCGTA 57.855 40.909 0.00 0.00 39.04 4.42
7490 14600 2.999331 ACAATGCTTTATACCCAGCGT 58.001 42.857 0.00 0.00 39.04 5.07
7491 14601 4.127171 ACTACAATGCTTTATACCCAGCG 58.873 43.478 0.00 0.00 39.04 5.18
7492 14602 7.162082 AGATACTACAATGCTTTATACCCAGC 58.838 38.462 0.00 0.00 36.49 4.85
7566 15281 1.003233 GGGGGCAGTTGAGTGACTC 60.003 63.158 5.47 5.47 0.00 3.36
7567 15282 1.462238 AGGGGGCAGTTGAGTGACT 60.462 57.895 0.00 0.00 0.00 3.41
7568 15283 1.003233 GAGGGGGCAGTTGAGTGAC 60.003 63.158 0.00 0.00 0.00 3.67
7569 15284 0.768221 AAGAGGGGGCAGTTGAGTGA 60.768 55.000 0.00 0.00 0.00 3.41
7598 15335 4.991056 GTCTATTTGAGAGTGTGTGAAGCA 59.009 41.667 0.00 0.00 33.72 3.91
7599 15336 4.390297 GGTCTATTTGAGAGTGTGTGAAGC 59.610 45.833 0.00 0.00 33.72 3.86
7625 15362 4.504596 GCCCGACCCATCCATGCA 62.505 66.667 0.00 0.00 0.00 3.96
7639 15394 3.313524 CCAAGCCAAACCCAGCCC 61.314 66.667 0.00 0.00 0.00 5.19
7640 15395 4.007644 GCCAAGCCAAACCCAGCC 62.008 66.667 0.00 0.00 0.00 4.85
7641 15396 2.115734 AATGCCAAGCCAAACCCAGC 62.116 55.000 0.00 0.00 0.00 4.85
7642 15397 0.037046 GAATGCCAAGCCAAACCCAG 60.037 55.000 0.00 0.00 0.00 4.45
7643 15398 0.471591 AGAATGCCAAGCCAAACCCA 60.472 50.000 0.00 0.00 0.00 4.51
7644 15399 0.037046 CAGAATGCCAAGCCAAACCC 60.037 55.000 0.00 0.00 0.00 4.11
7645 15400 0.037046 CCAGAATGCCAAGCCAAACC 60.037 55.000 0.00 0.00 31.97 3.27
7646 15401 0.671472 GCCAGAATGCCAAGCCAAAC 60.671 55.000 0.00 0.00 31.97 2.93
7647 15402 1.672898 GCCAGAATGCCAAGCCAAA 59.327 52.632 0.00 0.00 31.97 3.28
7648 15403 3.379880 GCCAGAATGCCAAGCCAA 58.620 55.556 0.00 0.00 31.97 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.