Multiple sequence alignment - TraesCS7A01G118200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G118200 chr7A 100.000 5389 0 0 1 5389 76359324 76353936 0.000000e+00 9952.0
1 TraesCS7A01G118200 chr7A 96.755 4407 111 10 478 4854 76423082 76418678 0.000000e+00 7317.0
2 TraesCS7A01G118200 chr7A 96.710 4407 112 11 478 4854 76396386 76391983 0.000000e+00 7304.0
3 TraesCS7A01G118200 chr7A 97.403 3042 74 1 1818 4854 76455185 76452144 0.000000e+00 5175.0
4 TraesCS7A01G118200 chr7A 97.614 1006 24 0 1055 2060 76456188 76455183 0.000000e+00 1725.0
5 TraesCS7A01G118200 chr7A 83.068 1825 265 34 2852 4652 76292194 76290390 0.000000e+00 1618.0
6 TraesCS7A01G118200 chr7A 98.302 530 8 1 4860 5389 78943879 78943351 0.000000e+00 928.0
7 TraesCS7A01G118200 chr7A 90.236 594 44 5 478 1059 76479387 76478796 0.000000e+00 763.0
8 TraesCS7A01G118200 chr7A 88.978 499 25 3 4917 5389 727996666 727996172 1.670000e-164 590.0
9 TraesCS7A01G118200 chr7A 82.402 483 67 14 4 477 608430749 608431222 6.500000e-109 405.0
10 TraesCS7A01G118200 chr7A 82.305 486 68 15 1 477 608437578 608438054 6.500000e-109 405.0
11 TraesCS7A01G118200 chr7A 82.136 487 68 15 1 477 608424276 608424753 3.020000e-107 399.0
12 TraesCS7A01G118200 chr7A 96.815 157 4 1 4847 5002 727997276 727997120 1.490000e-65 261.0
13 TraesCS7A01G118200 chr7A 80.068 296 44 10 1013 1300 76401690 76401402 7.080000e-49 206.0
14 TraesCS7A01G118200 chr7A 83.333 156 17 1 486 632 76363799 76363644 9.420000e-28 135.0
15 TraesCS7A01G118200 chr7B 89.922 2312 178 28 2562 4852 12365157 12362880 0.000000e+00 2928.0
16 TraesCS7A01G118200 chr7B 87.043 2161 251 21 2712 4854 12212426 12210277 0.000000e+00 2412.0
17 TraesCS7A01G118200 chr7B 85.362 2070 184 53 478 2494 12367155 12365152 0.000000e+00 2034.0
18 TraesCS7A01G118200 chr7B 82.268 1393 120 60 478 1786 12208910 12207561 0.000000e+00 1086.0
19 TraesCS7A01G118200 chr7B 93.053 547 37 1 2926 3472 12362855 12362310 0.000000e+00 798.0
20 TraesCS7A01G118200 chr7B 88.006 642 72 1 1831 2467 12244347 12243706 0.000000e+00 754.0
21 TraesCS7A01G118200 chr7B 87.558 643 73 3 1831 2467 12213068 12212427 0.000000e+00 737.0
22 TraesCS7A01G118200 chr7B 88.054 519 40 11 1277 1786 12243196 12242691 3.590000e-166 595.0
23 TraesCS7A01G118200 chrUn 95.581 1765 60 8 542 2290 372177680 372179442 0.000000e+00 2811.0
24 TraesCS7A01G118200 chrUn 100.000 418 0 0 2713 3130 477052416 477051999 0.000000e+00 773.0
25 TraesCS7A01G118200 chr6A 88.559 2325 212 32 2487 4792 106736181 106738470 0.000000e+00 2771.0
26 TraesCS7A01G118200 chr6A 82.270 1348 176 38 1166 2493 106734854 106736158 0.000000e+00 1107.0
27 TraesCS7A01G118200 chr7D 87.186 2310 248 35 2562 4854 69782947 69780669 0.000000e+00 2582.0
28 TraesCS7A01G118200 chr7D 87.100 2310 250 35 2562 4854 69806642 69804364 0.000000e+00 2571.0
29 TraesCS7A01G118200 chr7D 85.978 1840 149 48 478 2271 69808611 69806835 0.000000e+00 1868.0
30 TraesCS7A01G118200 chr7D 83.890 1378 130 45 478 1786 69779621 69778267 0.000000e+00 1230.0
31 TraesCS7A01G118200 chr7D 83.890 1378 130 45 478 1786 69803339 69801985 0.000000e+00 1230.0
32 TraesCS7A01G118200 chr7D 82.698 1312 166 35 1169 2460 69712368 69711098 0.000000e+00 1109.0
33 TraesCS7A01G118200 chr7D 94.316 475 24 3 6 477 568191402 568191876 0.000000e+00 725.0
34 TraesCS7A01G118200 chr5D 89.897 485 39 8 1 477 113992007 113992489 2.760000e-172 616.0
35 TraesCS7A01G118200 chr5D 88.843 484 44 9 1 477 113933536 113934016 2.160000e-163 586.0
36 TraesCS7A01G118200 chr3B 87.321 489 47 10 1 478 648714058 648714542 3.670000e-151 545.0
37 TraesCS7A01G118200 chr5B 82.922 486 65 14 1 476 62157987 62158464 6.450000e-114 422.0
38 TraesCS7A01G118200 chr5B 82.377 488 67 14 1 477 62176876 62177355 1.810000e-109 407.0
39 TraesCS7A01G118200 chr5B 81.579 152 25 2 4853 5003 682022788 682022639 7.330000e-24 122.0
40 TraesCS7A01G118200 chr4B 87.647 340 28 7 4853 5188 663078069 663078398 3.050000e-102 383.0
41 TraesCS7A01G118200 chr4B 92.308 117 9 0 5273 5389 663078548 663078664 3.340000e-37 167.0
42 TraesCS7A01G118200 chr4B 90.476 84 7 1 5194 5276 663078430 663078513 5.710000e-20 110.0
43 TraesCS7A01G118200 chr3A 85.621 153 20 2 4850 5001 519413147 519412996 5.590000e-35 159.0
44 TraesCS7A01G118200 chr3D 79.032 186 33 5 4853 5037 592233301 592233481 7.330000e-24 122.0
45 TraesCS7A01G118200 chr3D 79.032 186 33 5 4853 5037 592264951 592265131 7.330000e-24 122.0
46 TraesCS7A01G118200 chr3D 79.032 186 33 5 4853 5037 592285101 592285281 7.330000e-24 122.0
47 TraesCS7A01G118200 chr6D 83.333 102 15 2 2653 2753 140644661 140644561 5.750000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G118200 chr7A 76353936 76359324 5388 True 9952.000000 9952 100.000000 1 5389 1 chr7A.!!$R2 5388
1 TraesCS7A01G118200 chr7A 76418678 76423082 4404 True 7317.000000 7317 96.755000 478 4854 1 chr7A.!!$R6 4376
2 TraesCS7A01G118200 chr7A 76391983 76396386 4403 True 7304.000000 7304 96.710000 478 4854 1 chr7A.!!$R4 4376
3 TraesCS7A01G118200 chr7A 76452144 76456188 4044 True 3450.000000 5175 97.508500 1055 4854 2 chr7A.!!$R9 3799
4 TraesCS7A01G118200 chr7A 76290390 76292194 1804 True 1618.000000 1618 83.068000 2852 4652 1 chr7A.!!$R1 1800
5 TraesCS7A01G118200 chr7A 78943351 78943879 528 True 928.000000 928 98.302000 4860 5389 1 chr7A.!!$R8 529
6 TraesCS7A01G118200 chr7A 76478796 76479387 591 True 763.000000 763 90.236000 478 1059 1 chr7A.!!$R7 581
7 TraesCS7A01G118200 chr7A 727996172 727997276 1104 True 425.500000 590 92.896500 4847 5389 2 chr7A.!!$R10 542
8 TraesCS7A01G118200 chr7B 12362310 12367155 4845 True 1920.000000 2928 89.445667 478 4852 3 chr7B.!!$R3 4374
9 TraesCS7A01G118200 chr7B 12207561 12213068 5507 True 1411.666667 2412 85.623000 478 4854 3 chr7B.!!$R1 4376
10 TraesCS7A01G118200 chr7B 12242691 12244347 1656 True 674.500000 754 88.030000 1277 2467 2 chr7B.!!$R2 1190
11 TraesCS7A01G118200 chrUn 372177680 372179442 1762 False 2811.000000 2811 95.581000 542 2290 1 chrUn.!!$F1 1748
12 TraesCS7A01G118200 chr6A 106734854 106738470 3616 False 1939.000000 2771 85.414500 1166 4792 2 chr6A.!!$F1 3626
13 TraesCS7A01G118200 chr7D 69778267 69782947 4680 True 1906.000000 2582 85.538000 478 4854 2 chr7D.!!$R2 4376
14 TraesCS7A01G118200 chr7D 69801985 69808611 6626 True 1889.666667 2571 85.656000 478 4854 3 chr7D.!!$R3 4376
15 TraesCS7A01G118200 chr7D 69711098 69712368 1270 True 1109.000000 1109 82.698000 1169 2460 1 chr7D.!!$R1 1291
16 TraesCS7A01G118200 chr4B 663078069 663078664 595 False 220.000000 383 90.143667 4853 5389 3 chr4B.!!$F1 536

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
389 390 0.032117 GCTATTGGGGGAGGGCTTTT 60.032 55.000 0.00 0.00 0.00 2.27 F
942 961 0.467290 TGAACTGTTCTTGCACCCCC 60.467 55.000 20.18 0.00 0.00 5.40 F
946 965 1.228831 TGTTCTTGCACCCCCATGG 60.229 57.895 4.14 4.14 41.37 3.66 F
2329 2651 1.663445 GGGATCTCTATCGTGTTCGCG 60.663 57.143 0.00 0.00 36.96 5.87 F
3631 4011 1.134699 TGATCAAGTCTGCCATCGTCC 60.135 52.381 0.00 0.00 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1925 2247 1.202758 TGTGGCGTTGAAATCCTGACT 60.203 47.619 0.00 0.00 0.00 3.41 R
2612 2972 1.212935 GGAATCAGGGAAAGCTGGCTA 59.787 52.381 0.00 0.00 0.00 3.93 R
2707 3067 2.501261 ACAAGGTCTTTAAAGTCGCCC 58.499 47.619 14.74 10.46 0.00 6.13 R
4165 4552 0.325933 CTGACCATGTCAAGCTCCCA 59.674 55.000 0.00 0.00 42.26 4.37 R
5351 8267 1.066573 CGGCAGTTCACATCCTTCTCT 60.067 52.381 0.00 0.00 0.00 3.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.904649 GGGGAAATGGAAAGGCAAGG 59.095 55.000 0.00 0.00 0.00 3.61
20 21 1.552254 GGGGAAATGGAAAGGCAAGGA 60.552 52.381 0.00 0.00 0.00 3.36
21 22 1.827344 GGGAAATGGAAAGGCAAGGAG 59.173 52.381 0.00 0.00 0.00 3.69
22 23 1.827344 GGAAATGGAAAGGCAAGGAGG 59.173 52.381 0.00 0.00 0.00 4.30
23 24 2.557452 GGAAATGGAAAGGCAAGGAGGA 60.557 50.000 0.00 0.00 0.00 3.71
24 25 2.999185 AATGGAAAGGCAAGGAGGAA 57.001 45.000 0.00 0.00 0.00 3.36
25 26 2.521547 ATGGAAAGGCAAGGAGGAAG 57.478 50.000 0.00 0.00 0.00 3.46
26 27 0.405585 TGGAAAGGCAAGGAGGAAGG 59.594 55.000 0.00 0.00 0.00 3.46
27 28 0.698818 GGAAAGGCAAGGAGGAAGGA 59.301 55.000 0.00 0.00 0.00 3.36
28 29 1.614583 GGAAAGGCAAGGAGGAAGGAC 60.615 57.143 0.00 0.00 0.00 3.85
29 30 0.405973 AAAGGCAAGGAGGAAGGACC 59.594 55.000 0.00 0.00 39.35 4.46
51 52 5.982890 CTGAATAGGAGGAGAGAAGGATC 57.017 47.826 0.00 0.00 0.00 3.36
52 53 5.392995 CTGAATAGGAGGAGAGAAGGATCA 58.607 45.833 0.00 0.00 0.00 2.92
53 54 5.144100 TGAATAGGAGGAGAGAAGGATCAC 58.856 45.833 0.00 0.00 0.00 3.06
54 55 2.470057 AGGAGGAGAGAAGGATCACC 57.530 55.000 0.00 0.00 0.00 4.02
84 85 3.004752 ACCCTTGATGGTGACTATTGC 57.995 47.619 0.00 0.00 37.20 3.56
85 86 2.301346 CCCTTGATGGTGACTATTGCC 58.699 52.381 0.00 0.00 0.00 4.52
86 87 2.092212 CCCTTGATGGTGACTATTGCCT 60.092 50.000 0.00 0.00 0.00 4.75
87 88 2.947652 CCTTGATGGTGACTATTGCCTG 59.052 50.000 0.00 0.00 0.00 4.85
88 89 2.715749 TGATGGTGACTATTGCCTGG 57.284 50.000 0.00 0.00 0.00 4.45
89 90 1.915489 TGATGGTGACTATTGCCTGGT 59.085 47.619 0.00 0.00 0.00 4.00
90 91 3.111484 TGATGGTGACTATTGCCTGGTA 58.889 45.455 0.00 0.00 0.00 3.25
91 92 3.716353 TGATGGTGACTATTGCCTGGTAT 59.284 43.478 0.00 0.00 0.00 2.73
92 93 3.558931 TGGTGACTATTGCCTGGTATG 57.441 47.619 0.00 0.00 0.00 2.39
93 94 2.843730 TGGTGACTATTGCCTGGTATGT 59.156 45.455 0.00 0.00 0.00 2.29
94 95 3.265737 TGGTGACTATTGCCTGGTATGTT 59.734 43.478 0.00 0.00 0.00 2.71
95 96 3.877508 GGTGACTATTGCCTGGTATGTTC 59.122 47.826 0.00 0.00 0.00 3.18
96 97 4.384208 GGTGACTATTGCCTGGTATGTTCT 60.384 45.833 0.00 0.00 0.00 3.01
97 98 4.572389 GTGACTATTGCCTGGTATGTTCTG 59.428 45.833 0.00 0.00 0.00 3.02
98 99 4.469586 TGACTATTGCCTGGTATGTTCTGA 59.530 41.667 0.00 0.00 0.00 3.27
99 100 5.130975 TGACTATTGCCTGGTATGTTCTGAT 59.869 40.000 0.00 0.00 0.00 2.90
100 101 5.371526 ACTATTGCCTGGTATGTTCTGATG 58.628 41.667 0.00 0.00 0.00 3.07
101 102 3.719268 TTGCCTGGTATGTTCTGATGT 57.281 42.857 0.00 0.00 0.00 3.06
102 103 4.835284 TTGCCTGGTATGTTCTGATGTA 57.165 40.909 0.00 0.00 0.00 2.29
103 104 5.372343 TTGCCTGGTATGTTCTGATGTAT 57.628 39.130 0.00 0.00 0.00 2.29
104 105 4.960938 TGCCTGGTATGTTCTGATGTATC 58.039 43.478 0.00 0.00 0.00 2.24
105 106 4.408596 TGCCTGGTATGTTCTGATGTATCA 59.591 41.667 0.00 0.00 35.16 2.15
106 107 5.072193 TGCCTGGTATGTTCTGATGTATCAT 59.928 40.000 0.00 0.00 36.02 2.45
107 108 5.641209 GCCTGGTATGTTCTGATGTATCATC 59.359 44.000 0.00 3.16 36.02 2.92
108 109 6.169094 CCTGGTATGTTCTGATGTATCATCC 58.831 44.000 7.18 0.00 36.02 3.51
109 110 6.114187 TGGTATGTTCTGATGTATCATCCC 57.886 41.667 7.18 0.57 36.02 3.85
110 111 5.846164 TGGTATGTTCTGATGTATCATCCCT 59.154 40.000 7.18 0.00 36.02 4.20
111 112 6.014242 TGGTATGTTCTGATGTATCATCCCTC 60.014 42.308 7.18 0.00 36.02 4.30
112 113 6.212388 GGTATGTTCTGATGTATCATCCCTCT 59.788 42.308 7.18 0.00 36.02 3.69
113 114 5.798125 TGTTCTGATGTATCATCCCTCTC 57.202 43.478 7.18 0.00 36.02 3.20
114 115 5.462240 TGTTCTGATGTATCATCCCTCTCT 58.538 41.667 7.18 0.00 36.02 3.10
115 116 5.538053 TGTTCTGATGTATCATCCCTCTCTC 59.462 44.000 7.18 0.00 36.02 3.20
116 117 5.597430 TCTGATGTATCATCCCTCTCTCT 57.403 43.478 7.18 0.00 36.02 3.10
117 118 5.963092 TCTGATGTATCATCCCTCTCTCTT 58.037 41.667 7.18 0.00 36.02 2.85
118 119 6.009589 TCTGATGTATCATCCCTCTCTCTTC 58.990 44.000 7.18 0.00 36.02 2.87
119 120 5.963092 TGATGTATCATCCCTCTCTCTTCT 58.037 41.667 7.18 0.00 0.00 2.85
120 121 6.380414 TGATGTATCATCCCTCTCTCTTCTT 58.620 40.000 7.18 0.00 0.00 2.52
121 122 6.843333 TGATGTATCATCCCTCTCTCTTCTTT 59.157 38.462 7.18 0.00 0.00 2.52
122 123 7.346698 TGATGTATCATCCCTCTCTCTTCTTTT 59.653 37.037 7.18 0.00 0.00 2.27
123 124 7.502060 TGTATCATCCCTCTCTCTTCTTTTT 57.498 36.000 0.00 0.00 0.00 1.94
142 143 4.478206 TTTTGCACCAAATTGTTCCAGA 57.522 36.364 0.00 0.00 33.19 3.86
143 144 4.686191 TTTGCACCAAATTGTTCCAGAT 57.314 36.364 0.00 0.00 0.00 2.90
144 145 3.940209 TGCACCAAATTGTTCCAGATC 57.060 42.857 0.00 0.00 0.00 2.75
145 146 2.562298 TGCACCAAATTGTTCCAGATCC 59.438 45.455 0.00 0.00 0.00 3.36
146 147 2.415893 GCACCAAATTGTTCCAGATCCG 60.416 50.000 0.00 0.00 0.00 4.18
147 148 1.818674 ACCAAATTGTTCCAGATCCGC 59.181 47.619 0.00 0.00 0.00 5.54
148 149 2.094675 CCAAATTGTTCCAGATCCGCT 58.905 47.619 0.00 0.00 0.00 5.52
149 150 2.159338 CCAAATTGTTCCAGATCCGCTG 60.159 50.000 0.00 0.00 44.49 5.18
150 151 2.489329 CAAATTGTTCCAGATCCGCTGT 59.511 45.455 0.00 0.00 43.33 4.40
151 152 2.496899 ATTGTTCCAGATCCGCTGTT 57.503 45.000 0.00 0.00 43.33 3.16
152 153 3.627395 ATTGTTCCAGATCCGCTGTTA 57.373 42.857 0.00 0.00 43.33 2.41
153 154 3.627395 TTGTTCCAGATCCGCTGTTAT 57.373 42.857 0.00 0.00 43.33 1.89
154 155 3.627395 TGTTCCAGATCCGCTGTTATT 57.373 42.857 0.00 0.00 43.33 1.40
155 156 3.950397 TGTTCCAGATCCGCTGTTATTT 58.050 40.909 0.00 0.00 43.33 1.40
156 157 5.092554 TGTTCCAGATCCGCTGTTATTTA 57.907 39.130 0.00 0.00 43.33 1.40
157 158 5.492895 TGTTCCAGATCCGCTGTTATTTAA 58.507 37.500 0.00 0.00 43.33 1.52
158 159 5.353123 TGTTCCAGATCCGCTGTTATTTAAC 59.647 40.000 0.00 0.00 43.33 2.01
159 160 5.353394 TCCAGATCCGCTGTTATTTAACT 57.647 39.130 2.45 0.00 43.33 2.24
160 161 5.741011 TCCAGATCCGCTGTTATTTAACTT 58.259 37.500 2.45 0.00 43.33 2.66
161 162 6.177610 TCCAGATCCGCTGTTATTTAACTTT 58.822 36.000 2.45 0.00 43.33 2.66
162 163 6.093495 TCCAGATCCGCTGTTATTTAACTTTG 59.907 38.462 2.45 0.00 43.33 2.77
163 164 6.093495 CCAGATCCGCTGTTATTTAACTTTGA 59.907 38.462 2.45 0.00 43.33 2.69
164 165 7.201732 CCAGATCCGCTGTTATTTAACTTTGAT 60.202 37.037 2.45 0.50 43.33 2.57
165 166 8.184192 CAGATCCGCTGTTATTTAACTTTGATT 58.816 33.333 2.45 0.00 39.85 2.57
166 167 8.398665 AGATCCGCTGTTATTTAACTTTGATTC 58.601 33.333 2.45 0.00 37.12 2.52
167 168 7.441890 TCCGCTGTTATTTAACTTTGATTCA 57.558 32.000 2.45 0.00 37.12 2.57
168 169 8.050778 TCCGCTGTTATTTAACTTTGATTCAT 57.949 30.769 2.45 0.00 37.12 2.57
169 170 8.181573 TCCGCTGTTATTTAACTTTGATTCATC 58.818 33.333 2.45 0.00 37.12 2.92
170 171 8.184192 CCGCTGTTATTTAACTTTGATTCATCT 58.816 33.333 2.45 0.00 37.12 2.90
171 172 9.003112 CGCTGTTATTTAACTTTGATTCATCTG 57.997 33.333 2.45 0.00 37.12 2.90
172 173 8.801913 GCTGTTATTTAACTTTGATTCATCTGC 58.198 33.333 2.45 0.00 37.12 4.26
173 174 9.294030 CTGTTATTTAACTTTGATTCATCTGCC 57.706 33.333 2.45 0.00 37.12 4.85
174 175 8.801299 TGTTATTTAACTTTGATTCATCTGCCA 58.199 29.630 2.45 0.00 37.12 4.92
175 176 9.807649 GTTATTTAACTTTGATTCATCTGCCAT 57.192 29.630 0.00 0.00 33.52 4.40
176 177 9.806203 TTATTTAACTTTGATTCATCTGCCATG 57.194 29.630 0.00 0.00 0.00 3.66
177 178 4.730949 AACTTTGATTCATCTGCCATGG 57.269 40.909 7.63 7.63 0.00 3.66
178 179 2.429610 ACTTTGATTCATCTGCCATGGC 59.570 45.455 30.54 30.54 42.35 4.40
194 195 3.510846 GCAGCTCTGGCAATGGAG 58.489 61.111 0.00 0.00 41.70 3.86
195 196 1.077930 GCAGCTCTGGCAATGGAGA 60.078 57.895 6.43 0.00 41.70 3.71
196 197 0.465824 GCAGCTCTGGCAATGGAGAT 60.466 55.000 6.43 0.00 41.70 2.75
197 198 1.595466 CAGCTCTGGCAATGGAGATC 58.405 55.000 6.43 0.00 41.70 2.75
198 199 0.473326 AGCTCTGGCAATGGAGATCC 59.527 55.000 6.43 0.00 41.70 3.36
199 200 0.182061 GCTCTGGCAATGGAGATCCA 59.818 55.000 3.57 3.57 43.80 3.41
200 201 1.814634 GCTCTGGCAATGGAGATCCAG 60.815 57.143 7.76 0.92 45.59 3.86
226 227 1.623311 GGAACCCCTTTGTTTCATGGG 59.377 52.381 0.00 0.00 42.23 4.00
231 232 3.773560 CCCCTTTGTTTCATGGGTAAGA 58.226 45.455 0.00 0.00 38.03 2.10
232 233 4.156477 CCCCTTTGTTTCATGGGTAAGAA 58.844 43.478 0.00 0.00 38.03 2.52
233 234 4.220602 CCCCTTTGTTTCATGGGTAAGAAG 59.779 45.833 0.00 0.00 38.03 2.85
234 235 4.220602 CCCTTTGTTTCATGGGTAAGAAGG 59.779 45.833 0.00 0.71 35.13 3.46
235 236 4.832823 CCTTTGTTTCATGGGTAAGAAGGT 59.167 41.667 0.00 0.00 0.00 3.50
236 237 5.278957 CCTTTGTTTCATGGGTAAGAAGGTG 60.279 44.000 0.00 0.00 0.00 4.00
237 238 3.761897 TGTTTCATGGGTAAGAAGGTGG 58.238 45.455 0.00 0.00 0.00 4.61
238 239 3.089284 GTTTCATGGGTAAGAAGGTGGG 58.911 50.000 0.00 0.00 0.00 4.61
239 240 2.352561 TCATGGGTAAGAAGGTGGGA 57.647 50.000 0.00 0.00 0.00 4.37
240 241 2.196595 TCATGGGTAAGAAGGTGGGAG 58.803 52.381 0.00 0.00 0.00 4.30
241 242 0.919710 ATGGGTAAGAAGGTGGGAGC 59.080 55.000 0.00 0.00 0.00 4.70
242 243 0.474854 TGGGTAAGAAGGTGGGAGCA 60.475 55.000 0.00 0.00 0.00 4.26
243 244 0.253327 GGGTAAGAAGGTGGGAGCAG 59.747 60.000 0.00 0.00 0.00 4.24
244 245 0.253327 GGTAAGAAGGTGGGAGCAGG 59.747 60.000 0.00 0.00 0.00 4.85
245 246 0.984995 GTAAGAAGGTGGGAGCAGGT 59.015 55.000 0.00 0.00 0.00 4.00
246 247 2.185387 GTAAGAAGGTGGGAGCAGGTA 58.815 52.381 0.00 0.00 0.00 3.08
247 248 1.280457 AAGAAGGTGGGAGCAGGTAG 58.720 55.000 0.00 0.00 0.00 3.18
248 249 0.618968 AGAAGGTGGGAGCAGGTAGG 60.619 60.000 0.00 0.00 0.00 3.18
249 250 0.910088 GAAGGTGGGAGCAGGTAGGT 60.910 60.000 0.00 0.00 0.00 3.08
250 251 1.201429 AAGGTGGGAGCAGGTAGGTG 61.201 60.000 0.00 0.00 0.00 4.00
251 252 2.269241 GTGGGAGCAGGTAGGTGC 59.731 66.667 0.00 0.00 44.35 5.01
257 258 4.778143 GCAGGTAGGTGCGTGGGG 62.778 72.222 0.00 0.00 32.74 4.96
258 259 3.000819 CAGGTAGGTGCGTGGGGA 61.001 66.667 0.00 0.00 0.00 4.81
259 260 2.203877 AGGTAGGTGCGTGGGGAA 60.204 61.111 0.00 0.00 0.00 3.97
260 261 1.844289 AGGTAGGTGCGTGGGGAAA 60.844 57.895 0.00 0.00 0.00 3.13
261 262 1.073548 GGTAGGTGCGTGGGGAAAA 59.926 57.895 0.00 0.00 0.00 2.29
262 263 0.537828 GGTAGGTGCGTGGGGAAAAA 60.538 55.000 0.00 0.00 0.00 1.94
263 264 0.879090 GTAGGTGCGTGGGGAAAAAG 59.121 55.000 0.00 0.00 0.00 2.27
264 265 0.475044 TAGGTGCGTGGGGAAAAAGT 59.525 50.000 0.00 0.00 0.00 2.66
265 266 0.396556 AGGTGCGTGGGGAAAAAGTT 60.397 50.000 0.00 0.00 0.00 2.66
266 267 0.249280 GGTGCGTGGGGAAAAAGTTG 60.249 55.000 0.00 0.00 0.00 3.16
267 268 0.741915 GTGCGTGGGGAAAAAGTTGA 59.258 50.000 0.00 0.00 0.00 3.18
268 269 1.339929 GTGCGTGGGGAAAAAGTTGAT 59.660 47.619 0.00 0.00 0.00 2.57
269 270 1.339610 TGCGTGGGGAAAAAGTTGATG 59.660 47.619 0.00 0.00 0.00 3.07
270 271 1.336795 GCGTGGGGAAAAAGTTGATGG 60.337 52.381 0.00 0.00 0.00 3.51
271 272 1.336795 CGTGGGGAAAAAGTTGATGGC 60.337 52.381 0.00 0.00 0.00 4.40
272 273 1.001974 GTGGGGAAAAAGTTGATGGCC 59.998 52.381 0.00 0.00 0.00 5.36
273 274 1.347062 GGGGAAAAAGTTGATGGCCA 58.653 50.000 8.56 8.56 0.00 5.36
274 275 1.276138 GGGGAAAAAGTTGATGGCCAG 59.724 52.381 13.05 0.00 0.00 4.85
275 276 2.247358 GGGAAAAAGTTGATGGCCAGA 58.753 47.619 13.05 0.00 0.00 3.86
276 277 2.232208 GGGAAAAAGTTGATGGCCAGAG 59.768 50.000 13.05 0.00 0.00 3.35
277 278 2.232208 GGAAAAAGTTGATGGCCAGAGG 59.768 50.000 13.05 0.00 0.00 3.69
278 279 1.928868 AAAAGTTGATGGCCAGAGGG 58.071 50.000 13.05 0.00 37.18 4.30
288 289 4.154347 CCAGAGGGCCGTGAGAGC 62.154 72.222 0.65 0.00 0.00 4.09
289 290 3.073735 CAGAGGGCCGTGAGAGCT 61.074 66.667 0.65 0.00 0.00 4.09
290 291 2.284258 AGAGGGCCGTGAGAGCTT 60.284 61.111 0.65 0.00 0.00 3.74
291 292 2.185608 GAGGGCCGTGAGAGCTTC 59.814 66.667 0.65 0.00 0.00 3.86
292 293 3.378399 GAGGGCCGTGAGAGCTTCC 62.378 68.421 0.65 0.00 0.00 3.46
293 294 4.821589 GGGCCGTGAGAGCTTCCG 62.822 72.222 0.00 0.00 0.00 4.30
294 295 4.821589 GGCCGTGAGAGCTTCCGG 62.822 72.222 0.00 0.00 40.47 5.14
295 296 3.760035 GCCGTGAGAGCTTCCGGA 61.760 66.667 19.54 0.00 40.15 5.14
296 297 2.492090 CCGTGAGAGCTTCCGGAG 59.508 66.667 3.34 0.00 40.15 4.63
310 311 4.760220 GGAGGGGAGGGAAGGGCA 62.760 72.222 0.00 0.00 0.00 5.36
311 312 3.412408 GAGGGGAGGGAAGGGCAC 61.412 72.222 0.00 0.00 0.00 5.01
314 315 4.410400 GGGAGGGAAGGGCACGTG 62.410 72.222 12.28 12.28 0.00 4.49
315 316 3.319198 GGAGGGAAGGGCACGTGA 61.319 66.667 22.23 0.00 0.00 4.35
316 317 2.670148 GGAGGGAAGGGCACGTGAT 61.670 63.158 22.23 0.30 0.00 3.06
317 318 1.450312 GAGGGAAGGGCACGTGATG 60.450 63.158 22.23 0.00 0.00 3.07
318 319 2.438434 GGGAAGGGCACGTGATGG 60.438 66.667 22.23 0.00 0.00 3.51
319 320 2.351276 GGAAGGGCACGTGATGGT 59.649 61.111 22.23 0.03 0.00 3.55
320 321 1.745489 GGAAGGGCACGTGATGGTC 60.745 63.158 22.23 10.31 0.00 4.02
321 322 1.745489 GAAGGGCACGTGATGGTCC 60.745 63.158 22.23 10.37 0.00 4.46
322 323 3.605749 AAGGGCACGTGATGGTCCG 62.606 63.158 22.23 0.00 0.00 4.79
326 327 4.429212 CACGTGATGGTCCGGCGA 62.429 66.667 10.90 0.00 0.00 5.54
327 328 4.430765 ACGTGATGGTCCGGCGAC 62.431 66.667 9.30 4.52 38.38 5.19
335 336 4.077184 GTCCGGCGACCACATCCA 62.077 66.667 9.30 0.00 32.40 3.41
336 337 3.315140 TCCGGCGACCACATCCAA 61.315 61.111 9.30 0.00 0.00 3.53
337 338 2.124736 CCGGCGACCACATCCAAT 60.125 61.111 9.30 0.00 0.00 3.16
338 339 2.472059 CCGGCGACCACATCCAATG 61.472 63.158 9.30 0.00 0.00 2.82
339 340 2.800736 GGCGACCACATCCAATGC 59.199 61.111 0.00 0.00 0.00 3.56
340 341 2.774799 GGCGACCACATCCAATGCC 61.775 63.158 0.00 0.00 0.00 4.40
341 342 1.750399 GCGACCACATCCAATGCCT 60.750 57.895 0.00 0.00 0.00 4.75
342 343 1.996786 GCGACCACATCCAATGCCTG 61.997 60.000 0.00 0.00 0.00 4.85
343 344 0.392863 CGACCACATCCAATGCCTGA 60.393 55.000 0.00 0.00 0.00 3.86
344 345 1.748244 CGACCACATCCAATGCCTGAT 60.748 52.381 0.00 0.00 0.00 2.90
345 346 2.381911 GACCACATCCAATGCCTGATT 58.618 47.619 0.00 0.00 0.00 2.57
346 347 2.762327 GACCACATCCAATGCCTGATTT 59.238 45.455 0.00 0.00 0.00 2.17
347 348 2.498481 ACCACATCCAATGCCTGATTTG 59.502 45.455 0.00 0.00 0.00 2.32
348 349 2.498481 CCACATCCAATGCCTGATTTGT 59.502 45.455 0.00 0.00 0.00 2.83
349 350 3.055675 CCACATCCAATGCCTGATTTGTT 60.056 43.478 0.00 0.00 0.00 2.83
350 351 3.930229 CACATCCAATGCCTGATTTGTTG 59.070 43.478 0.00 0.00 0.00 3.33
351 352 3.055675 ACATCCAATGCCTGATTTGTTGG 60.056 43.478 0.00 0.00 40.45 3.77
352 353 1.901159 TCCAATGCCTGATTTGTTGGG 59.099 47.619 0.00 0.00 39.74 4.12
353 354 1.624813 CCAATGCCTGATTTGTTGGGT 59.375 47.619 0.00 0.00 36.53 4.51
354 355 2.038820 CCAATGCCTGATTTGTTGGGTT 59.961 45.455 0.00 0.00 36.53 4.11
355 356 3.496515 CCAATGCCTGATTTGTTGGGTTT 60.497 43.478 0.00 0.00 36.53 3.27
356 357 2.906691 TGCCTGATTTGTTGGGTTTG 57.093 45.000 0.00 0.00 0.00 2.93
357 358 2.392662 TGCCTGATTTGTTGGGTTTGA 58.607 42.857 0.00 0.00 0.00 2.69
358 359 2.971330 TGCCTGATTTGTTGGGTTTGAT 59.029 40.909 0.00 0.00 0.00 2.57
359 360 3.244146 TGCCTGATTTGTTGGGTTTGATG 60.244 43.478 0.00 0.00 0.00 3.07
360 361 3.328505 CCTGATTTGTTGGGTTTGATGC 58.671 45.455 0.00 0.00 0.00 3.91
361 362 2.988493 CTGATTTGTTGGGTTTGATGCG 59.012 45.455 0.00 0.00 0.00 4.73
362 363 1.726248 GATTTGTTGGGTTTGATGCGC 59.274 47.619 0.00 0.00 0.00 6.09
363 364 0.249657 TTTGTTGGGTTTGATGCGCC 60.250 50.000 4.18 0.00 0.00 6.53
364 365 1.112315 TTGTTGGGTTTGATGCGCCT 61.112 50.000 4.18 0.00 0.00 5.52
365 366 1.112315 TGTTGGGTTTGATGCGCCTT 61.112 50.000 4.18 0.00 0.00 4.35
366 367 0.033366 GTTGGGTTTGATGCGCCTTT 59.967 50.000 4.18 0.00 0.00 3.11
367 368 0.033228 TTGGGTTTGATGCGCCTTTG 59.967 50.000 4.18 0.00 0.00 2.77
368 369 1.112315 TGGGTTTGATGCGCCTTTGT 61.112 50.000 4.18 0.00 0.00 2.83
369 370 0.033366 GGGTTTGATGCGCCTTTGTT 59.967 50.000 4.18 0.00 0.00 2.83
370 371 1.139163 GGTTTGATGCGCCTTTGTTG 58.861 50.000 4.18 0.00 0.00 3.33
371 372 0.508213 GTTTGATGCGCCTTTGTTGC 59.492 50.000 4.18 0.00 0.00 4.17
372 373 0.388659 TTTGATGCGCCTTTGTTGCT 59.611 45.000 4.18 0.00 0.00 3.91
373 374 1.242989 TTGATGCGCCTTTGTTGCTA 58.757 45.000 4.18 0.00 0.00 3.49
374 375 1.462616 TGATGCGCCTTTGTTGCTAT 58.537 45.000 4.18 0.00 0.00 2.97
375 376 1.818060 TGATGCGCCTTTGTTGCTATT 59.182 42.857 4.18 0.00 0.00 1.73
376 377 2.187707 GATGCGCCTTTGTTGCTATTG 58.812 47.619 4.18 0.00 0.00 1.90
377 378 0.243365 TGCGCCTTTGTTGCTATTGG 59.757 50.000 4.18 0.00 0.00 3.16
378 379 0.458370 GCGCCTTTGTTGCTATTGGG 60.458 55.000 0.00 0.00 0.00 4.12
379 380 0.173255 CGCCTTTGTTGCTATTGGGG 59.827 55.000 0.00 0.00 0.00 4.96
380 381 0.536724 GCCTTTGTTGCTATTGGGGG 59.463 55.000 0.00 0.00 0.00 5.40
381 382 1.894978 GCCTTTGTTGCTATTGGGGGA 60.895 52.381 0.00 0.00 0.00 4.81
382 383 2.102578 CCTTTGTTGCTATTGGGGGAG 58.897 52.381 0.00 0.00 0.00 4.30
383 384 2.102578 CTTTGTTGCTATTGGGGGAGG 58.897 52.381 0.00 0.00 0.00 4.30
384 385 0.334676 TTGTTGCTATTGGGGGAGGG 59.665 55.000 0.00 0.00 0.00 4.30
385 386 1.455773 GTTGCTATTGGGGGAGGGC 60.456 63.158 0.00 0.00 0.00 5.19
386 387 1.622442 TTGCTATTGGGGGAGGGCT 60.622 57.895 0.00 0.00 0.00 5.19
387 388 1.221213 TTGCTATTGGGGGAGGGCTT 61.221 55.000 0.00 0.00 0.00 4.35
388 389 1.221213 TGCTATTGGGGGAGGGCTTT 61.221 55.000 0.00 0.00 0.00 3.51
389 390 0.032117 GCTATTGGGGGAGGGCTTTT 60.032 55.000 0.00 0.00 0.00 2.27
390 391 1.622449 GCTATTGGGGGAGGGCTTTTT 60.622 52.381 0.00 0.00 0.00 1.94
407 408 3.970205 TTTTTCTGGGATCGGGGAC 57.030 52.632 0.00 0.00 0.00 4.46
408 409 1.068948 TTTTTCTGGGATCGGGGACA 58.931 50.000 0.00 0.00 0.00 4.02
409 410 0.618458 TTTTCTGGGATCGGGGACAG 59.382 55.000 0.00 0.00 0.00 3.51
410 411 1.271840 TTTCTGGGATCGGGGACAGG 61.272 60.000 0.00 0.00 0.00 4.00
411 412 2.041922 CTGGGATCGGGGACAGGA 60.042 66.667 0.00 0.00 0.00 3.86
412 413 1.460305 CTGGGATCGGGGACAGGAT 60.460 63.158 0.00 0.00 0.00 3.24
413 414 1.459539 TGGGATCGGGGACAGGATC 60.460 63.158 0.00 0.00 38.53 3.36
414 415 1.152226 GGGATCGGGGACAGGATCT 60.152 63.158 0.00 0.00 39.01 2.75
415 416 0.764752 GGGATCGGGGACAGGATCTT 60.765 60.000 0.00 0.00 39.01 2.40
416 417 1.132500 GGATCGGGGACAGGATCTTT 58.868 55.000 0.00 0.00 39.01 2.52
417 418 1.070914 GGATCGGGGACAGGATCTTTC 59.929 57.143 0.00 0.00 39.01 2.62
418 419 1.070914 GATCGGGGACAGGATCTTTCC 59.929 57.143 0.00 0.00 42.96 3.13
445 446 4.189580 GGCCGCTGGGGAATGCTA 62.190 66.667 15.77 0.00 38.47 3.49
446 447 2.592861 GCCGCTGGGGAATGCTAG 60.593 66.667 15.77 0.00 38.47 3.42
447 448 2.111878 CCGCTGGGGAATGCTAGG 59.888 66.667 4.46 0.00 38.47 3.02
448 449 2.111878 CGCTGGGGAATGCTAGGG 59.888 66.667 0.00 0.00 0.00 3.53
449 450 2.443394 CGCTGGGGAATGCTAGGGA 61.443 63.158 0.00 0.00 0.00 4.20
450 451 1.453669 GCTGGGGAATGCTAGGGAG 59.546 63.158 0.00 0.00 0.00 4.30
475 476 4.253257 CCGCTCCCTAGACGCGTC 62.253 72.222 31.30 31.30 44.92 5.19
476 477 4.253257 CGCTCCCTAGACGCGTCC 62.253 72.222 34.08 16.62 41.78 4.79
495 496 5.164061 GCGTCCTTATTTGAAAACATGCAAG 60.164 40.000 0.00 0.00 0.00 4.01
499 500 6.705381 TCCTTATTTGAAAACATGCAAGGTTG 59.295 34.615 7.76 0.00 41.66 3.77
564 574 6.488769 ACGTACCCATGGACTATTTGAATA 57.511 37.500 15.22 0.00 0.00 1.75
572 582 5.984233 TGGACTATTTGAATATGTCACGC 57.016 39.130 0.00 0.00 35.39 5.34
583 593 5.929415 TGAATATGTCACGCTTGTCAACTTA 59.071 36.000 0.00 0.00 0.00 2.24
616 634 2.268298 CTACTGCCGCGTTTGTAGAAT 58.732 47.619 18.44 0.00 35.66 2.40
621 639 2.159585 TGCCGCGTTTGTAGAATGATTG 60.160 45.455 4.92 0.00 0.00 2.67
632 650 5.178061 TGTAGAATGATTGAGACGCATGTT 58.822 37.500 0.00 0.00 0.00 2.71
634 652 3.376234 AGAATGATTGAGACGCATGTTGG 59.624 43.478 0.00 0.00 0.00 3.77
640 658 0.924090 GAGACGCATGTTGGACGATC 59.076 55.000 0.00 0.00 0.00 3.69
646 664 1.061131 GCATGTTGGACGATCAAGACG 59.939 52.381 0.00 0.00 0.00 4.18
658 676 1.308047 TCAAGACGCATGTGCAAAGT 58.692 45.000 6.08 0.00 42.21 2.66
666 684 1.268999 GCATGTGCAAAGTCGTGGAAA 60.269 47.619 0.00 0.00 41.59 3.13
670 688 1.871039 GTGCAAAGTCGTGGAAAGCTA 59.129 47.619 0.00 0.00 0.00 3.32
698 716 1.009829 GTCGATCAGGTCATTGCACC 58.990 55.000 0.00 0.00 36.58 5.01
711 729 5.243981 GTCATTGCACCAGAGAGCATATAT 58.756 41.667 0.00 0.00 39.44 0.86
716 734 7.496529 TTGCACCAGAGAGCATATATTTAAC 57.503 36.000 0.00 0.00 39.44 2.01
757 775 1.962100 GTACTAATAGCCGCCAGGACT 59.038 52.381 0.00 0.00 41.02 3.85
770 788 3.282021 GCCAGGACTTGATCAAAGCATA 58.718 45.455 9.88 0.00 39.76 3.14
789 807 4.210120 GCATAGTGCTTCTTCCTCATTACG 59.790 45.833 0.00 0.00 40.96 3.18
797 815 5.334879 GCTTCTTCCTCATTACGAAAAGCAA 60.335 40.000 0.00 0.00 35.09 3.91
800 818 4.280436 TCCTCATTACGAAAAGCAAGGA 57.720 40.909 0.00 0.00 0.00 3.36
872 890 2.407361 CGCTGTCACCTAACTAACAACG 59.593 50.000 0.00 0.00 0.00 4.10
887 905 2.306847 ACAACGCTGAAACATTCCCTT 58.693 42.857 0.00 0.00 0.00 3.95
890 908 1.000274 ACGCTGAAACATTCCCTTTGC 60.000 47.619 0.00 0.00 0.00 3.68
900 918 4.886579 ACATTCCCTTTGCAATGAGAAAC 58.113 39.130 12.25 0.00 34.60 2.78
907 926 5.350633 CCTTTGCAATGAGAAACAAGACAA 58.649 37.500 13.58 0.00 0.00 3.18
942 961 0.467290 TGAACTGTTCTTGCACCCCC 60.467 55.000 20.18 0.00 0.00 5.40
946 965 1.228831 TGTTCTTGCACCCCCATGG 60.229 57.895 4.14 4.14 41.37 3.66
983 1002 7.012894 TGGCTGCTATATAAACATACAAACCAC 59.987 37.037 0.00 0.00 0.00 4.16
1123 1142 5.023920 CGCGTCGAGTAAAGTAAGATACAA 58.976 41.667 0.00 0.00 0.00 2.41
1135 1154 4.776308 AGTAAGATACAAACCCGAGTCCTT 59.224 41.667 0.00 0.00 0.00 3.36
1231 1251 3.497332 TCGTGTATATGGGGGAGAAGAG 58.503 50.000 0.00 0.00 0.00 2.85
1241 1261 1.704070 GGGGAGAAGAGGCATGATGAT 59.296 52.381 0.00 0.00 0.00 2.45
1363 1397 2.076100 GGAGTTCATGTTGCATCGTCA 58.924 47.619 0.00 0.00 0.00 4.35
1375 1427 4.099380 TGCATCGTCAACGTATTAGTCA 57.901 40.909 2.09 0.00 40.80 3.41
1515 1580 3.987868 TGAGACAATCGCAAGTAAGTGAC 59.012 43.478 0.00 0.00 39.48 3.67
1536 1601 2.890311 CTGTCAGTCCTATAGGCTCCTG 59.110 54.545 14.50 17.48 34.44 3.86
1925 2247 2.647299 TGGAAAGGGAAATGCCAGACTA 59.353 45.455 0.00 0.00 38.95 2.59
2119 2441 2.774351 GGAGGCCTAGGCATGGGT 60.774 66.667 34.09 13.38 44.11 4.51
2329 2651 1.663445 GGGATCTCTATCGTGTTCGCG 60.663 57.143 0.00 0.00 36.96 5.87
2416 2744 2.622436 GCTAGCACGATTGTCTTTCCT 58.378 47.619 10.63 0.00 0.00 3.36
2441 2769 3.809832 CCTTGATATCGCTCGGAAACAAT 59.190 43.478 0.00 0.00 0.00 2.71
2485 2813 5.437289 TGCTACAAACAAACATTCTCCAG 57.563 39.130 0.00 0.00 0.00 3.86
2499 2856 7.645058 ACATTCTCCAGGTATTTATTTGGTG 57.355 36.000 0.00 0.00 32.51 4.17
2509 2866 9.184523 CAGGTATTTATTTGGTGTGAGGAAATA 57.815 33.333 0.00 0.00 0.00 1.40
2612 2972 3.097614 AGTACATTTAGCTCGTCCCTGT 58.902 45.455 0.00 0.00 0.00 4.00
2637 2997 3.950395 CCAGCTTTCCCTGATTCCTTTAG 59.050 47.826 0.00 0.00 34.77 1.85
2707 3067 3.442625 ACAACAATGCATCTGTGATCAGG 59.557 43.478 13.05 0.00 41.59 3.86
3218 3591 1.404035 CATGCCAGTCATGTGTCATGG 59.596 52.381 9.39 1.21 45.79 3.66
3631 4011 1.134699 TGATCAAGTCTGCCATCGTCC 60.135 52.381 0.00 0.00 0.00 4.79
4165 4552 4.042187 AGAGTGCAAGGAGGATACACTTTT 59.958 41.667 0.00 0.00 41.45 2.27
4543 4934 8.915871 TCTTTCTTGATGAAAACTTTGTTGAG 57.084 30.769 0.00 0.00 43.25 3.02
4556 4947 5.644644 ACTTTGTTGAGCTGAAAGTGAAAG 58.355 37.500 0.00 0.00 38.26 2.62
4585 4976 5.580297 TCAACACAACTGAATTTTCTTTGCC 59.420 36.000 5.61 0.00 0.00 4.52
4808 5223 5.104776 CCATGTCCTTTGATTCTACTCCTCA 60.105 44.000 0.00 0.00 0.00 3.86
5351 8267 2.615391 TCCATTATGGGCGATGGAGTA 58.385 47.619 11.76 0.00 45.14 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.904649 CCTTGCCTTTCCATTTCCCC 59.095 55.000 0.00 0.00 0.00 4.81
1 2 1.827344 CTCCTTGCCTTTCCATTTCCC 59.173 52.381 0.00 0.00 0.00 3.97
5 6 2.558350 CCTTCCTCCTTGCCTTTCCATT 60.558 50.000 0.00 0.00 0.00 3.16
7 8 0.405585 CCTTCCTCCTTGCCTTTCCA 59.594 55.000 0.00 0.00 0.00 3.53
8 9 0.698818 TCCTTCCTCCTTGCCTTTCC 59.301 55.000 0.00 0.00 0.00 3.13
9 10 1.614583 GGTCCTTCCTCCTTGCCTTTC 60.615 57.143 0.00 0.00 0.00 2.62
10 11 0.405973 GGTCCTTCCTCCTTGCCTTT 59.594 55.000 0.00 0.00 0.00 3.11
11 12 0.476611 AGGTCCTTCCTCCTTGCCTT 60.477 55.000 0.00 0.00 44.42 4.35
12 13 1.162085 AGGTCCTTCCTCCTTGCCT 59.838 57.895 0.00 0.00 44.42 4.75
13 14 1.201429 TCAGGTCCTTCCTCCTTGCC 61.201 60.000 0.00 0.00 46.24 4.52
14 15 0.693049 TTCAGGTCCTTCCTCCTTGC 59.307 55.000 0.00 0.00 46.24 4.01
15 16 3.135530 CCTATTCAGGTCCTTCCTCCTTG 59.864 52.174 0.00 0.00 46.24 3.61
16 17 3.014110 TCCTATTCAGGTCCTTCCTCCTT 59.986 47.826 0.00 0.00 46.24 3.36
17 18 2.592512 TCCTATTCAGGTCCTTCCTCCT 59.407 50.000 0.00 0.00 46.24 3.69
18 19 2.969262 CTCCTATTCAGGTCCTTCCTCC 59.031 54.545 0.00 0.00 46.24 4.30
19 20 2.969262 CCTCCTATTCAGGTCCTTCCTC 59.031 54.545 0.00 0.00 46.24 3.71
21 22 2.969262 CTCCTCCTATTCAGGTCCTTCC 59.031 54.545 0.00 0.00 43.18 3.46
22 23 3.895041 CTCTCCTCCTATTCAGGTCCTTC 59.105 52.174 0.00 0.00 43.18 3.46
23 24 3.533907 TCTCTCCTCCTATTCAGGTCCTT 59.466 47.826 0.00 0.00 43.18 3.36
24 25 3.135279 TCTCTCCTCCTATTCAGGTCCT 58.865 50.000 0.00 0.00 43.18 3.85
25 26 3.603965 TCTCTCCTCCTATTCAGGTCC 57.396 52.381 0.00 0.00 43.18 4.46
26 27 3.895041 CCTTCTCTCCTCCTATTCAGGTC 59.105 52.174 0.00 0.00 43.18 3.85
27 28 3.533907 TCCTTCTCTCCTCCTATTCAGGT 59.466 47.826 0.00 0.00 43.18 4.00
28 29 4.191804 TCCTTCTCTCCTCCTATTCAGG 57.808 50.000 0.00 0.00 44.17 3.86
29 30 5.243730 GTGATCCTTCTCTCCTCCTATTCAG 59.756 48.000 0.00 0.00 0.00 3.02
30 31 5.144100 GTGATCCTTCTCTCCTCCTATTCA 58.856 45.833 0.00 0.00 0.00 2.57
31 32 4.526650 GGTGATCCTTCTCTCCTCCTATTC 59.473 50.000 0.00 0.00 0.00 1.75
32 33 4.171841 AGGTGATCCTTCTCTCCTCCTATT 59.828 45.833 0.00 0.00 42.12 1.73
33 34 3.732204 AGGTGATCCTTCTCTCCTCCTAT 59.268 47.826 0.00 0.00 42.12 2.57
34 35 3.135279 AGGTGATCCTTCTCTCCTCCTA 58.865 50.000 0.00 0.00 42.12 2.94
35 36 1.936631 AGGTGATCCTTCTCTCCTCCT 59.063 52.381 0.00 0.00 42.12 3.69
36 37 2.316108 GAGGTGATCCTTCTCTCCTCC 58.684 57.143 9.87 0.00 44.60 4.30
38 39 3.774842 AAGAGGTGATCCTTCTCTCCT 57.225 47.619 9.15 0.00 45.24 3.69
39 40 4.835284 AAAAGAGGTGATCCTTCTCTCC 57.165 45.455 9.15 0.00 45.24 3.71
64 65 2.357154 GGCAATAGTCACCATCAAGGGT 60.357 50.000 0.00 0.00 43.89 4.34
65 66 2.092212 AGGCAATAGTCACCATCAAGGG 60.092 50.000 0.00 0.00 43.89 3.95
66 67 2.947652 CAGGCAATAGTCACCATCAAGG 59.052 50.000 0.00 0.00 45.67 3.61
67 68 2.947652 CCAGGCAATAGTCACCATCAAG 59.052 50.000 0.00 0.00 0.00 3.02
68 69 2.308570 ACCAGGCAATAGTCACCATCAA 59.691 45.455 0.00 0.00 0.00 2.57
69 70 1.915489 ACCAGGCAATAGTCACCATCA 59.085 47.619 0.00 0.00 0.00 3.07
70 71 2.717639 ACCAGGCAATAGTCACCATC 57.282 50.000 0.00 0.00 0.00 3.51
71 72 3.459598 ACATACCAGGCAATAGTCACCAT 59.540 43.478 0.00 0.00 0.00 3.55
72 73 2.843730 ACATACCAGGCAATAGTCACCA 59.156 45.455 0.00 0.00 0.00 4.17
73 74 3.560636 ACATACCAGGCAATAGTCACC 57.439 47.619 0.00 0.00 0.00 4.02
74 75 4.572389 CAGAACATACCAGGCAATAGTCAC 59.428 45.833 0.00 0.00 0.00 3.67
75 76 4.469586 TCAGAACATACCAGGCAATAGTCA 59.530 41.667 0.00 0.00 0.00 3.41
76 77 5.023533 TCAGAACATACCAGGCAATAGTC 57.976 43.478 0.00 0.00 0.00 2.59
77 78 5.104360 ACATCAGAACATACCAGGCAATAGT 60.104 40.000 0.00 0.00 0.00 2.12
78 79 5.371526 ACATCAGAACATACCAGGCAATAG 58.628 41.667 0.00 0.00 0.00 1.73
79 80 5.372343 ACATCAGAACATACCAGGCAATA 57.628 39.130 0.00 0.00 0.00 1.90
80 81 4.240881 ACATCAGAACATACCAGGCAAT 57.759 40.909 0.00 0.00 0.00 3.56
81 82 3.719268 ACATCAGAACATACCAGGCAA 57.281 42.857 0.00 0.00 0.00 4.52
82 83 4.408596 TGATACATCAGAACATACCAGGCA 59.591 41.667 0.00 0.00 32.11 4.75
83 84 4.960938 TGATACATCAGAACATACCAGGC 58.039 43.478 0.00 0.00 32.11 4.85
84 85 6.169094 GGATGATACATCAGAACATACCAGG 58.831 44.000 12.66 0.00 40.64 4.45
85 86 6.013898 AGGGATGATACATCAGAACATACCAG 60.014 42.308 12.66 0.00 42.49 4.00
86 87 5.846164 AGGGATGATACATCAGAACATACCA 59.154 40.000 12.66 0.00 42.49 3.25
87 88 6.212388 AGAGGGATGATACATCAGAACATACC 59.788 42.308 12.66 0.00 40.94 2.73
88 89 7.178274 AGAGAGGGATGATACATCAGAACATAC 59.822 40.741 12.66 0.00 40.64 2.39
89 90 7.244558 AGAGAGGGATGATACATCAGAACATA 58.755 38.462 12.66 0.00 40.64 2.29
90 91 6.083383 AGAGAGGGATGATACATCAGAACAT 58.917 40.000 12.66 0.00 40.64 2.71
91 92 5.462240 AGAGAGGGATGATACATCAGAACA 58.538 41.667 12.66 0.00 40.64 3.18
92 93 5.774690 AGAGAGAGGGATGATACATCAGAAC 59.225 44.000 12.66 1.95 40.64 3.01
93 94 5.963092 AGAGAGAGGGATGATACATCAGAA 58.037 41.667 12.66 0.00 40.64 3.02
94 95 5.597430 AGAGAGAGGGATGATACATCAGA 57.403 43.478 12.66 0.00 40.64 3.27
95 96 6.012113 AGAAGAGAGAGGGATGATACATCAG 58.988 44.000 12.66 0.00 40.64 2.90
96 97 5.963092 AGAAGAGAGAGGGATGATACATCA 58.037 41.667 12.66 1.09 41.70 3.07
97 98 6.916360 AAGAAGAGAGAGGGATGATACATC 57.084 41.667 0.00 0.00 0.00 3.06
98 99 7.688918 AAAAGAAGAGAGAGGGATGATACAT 57.311 36.000 0.00 0.00 0.00 2.29
99 100 7.502060 AAAAAGAAGAGAGAGGGATGATACA 57.498 36.000 0.00 0.00 0.00 2.29
120 121 4.836825 TCTGGAACAATTTGGTGCAAAAA 58.163 34.783 10.00 0.00 34.20 1.94
121 122 4.478206 TCTGGAACAATTTGGTGCAAAA 57.522 36.364 10.00 0.00 34.20 2.44
122 123 4.502950 GGATCTGGAACAATTTGGTGCAAA 60.503 41.667 10.00 0.00 34.20 3.68
123 124 3.006752 GGATCTGGAACAATTTGGTGCAA 59.993 43.478 10.00 2.34 34.20 4.08
124 125 2.562298 GGATCTGGAACAATTTGGTGCA 59.438 45.455 8.43 8.43 38.70 4.57
125 126 2.415893 CGGATCTGGAACAATTTGGTGC 60.416 50.000 0.00 0.00 38.70 5.01
126 127 2.415893 GCGGATCTGGAACAATTTGGTG 60.416 50.000 3.14 0.00 38.70 4.17
127 128 1.818674 GCGGATCTGGAACAATTTGGT 59.181 47.619 3.14 0.00 38.70 3.67
128 129 2.094675 AGCGGATCTGGAACAATTTGG 58.905 47.619 3.14 0.00 38.70 3.28
129 130 3.141002 CAGCGGATCTGGAACAATTTG 57.859 47.619 3.14 0.00 38.70 2.32
140 141 7.865706 ATCAAAGTTAAATAACAGCGGATCT 57.134 32.000 6.13 0.00 38.62 2.75
141 142 8.181573 TGAATCAAAGTTAAATAACAGCGGATC 58.818 33.333 6.13 0.00 38.62 3.36
142 143 8.050778 TGAATCAAAGTTAAATAACAGCGGAT 57.949 30.769 6.13 1.52 38.62 4.18
143 144 7.441890 TGAATCAAAGTTAAATAACAGCGGA 57.558 32.000 6.13 0.00 38.62 5.54
144 145 8.184192 AGATGAATCAAAGTTAAATAACAGCGG 58.816 33.333 6.13 0.00 38.62 5.52
145 146 9.003112 CAGATGAATCAAAGTTAAATAACAGCG 57.997 33.333 6.13 0.00 38.62 5.18
146 147 8.801913 GCAGATGAATCAAAGTTAAATAACAGC 58.198 33.333 6.13 0.00 38.62 4.40
147 148 9.294030 GGCAGATGAATCAAAGTTAAATAACAG 57.706 33.333 6.13 0.00 38.62 3.16
148 149 8.801299 TGGCAGATGAATCAAAGTTAAATAACA 58.199 29.630 6.13 0.00 38.62 2.41
149 150 9.807649 ATGGCAGATGAATCAAAGTTAAATAAC 57.192 29.630 0.00 0.00 36.46 1.89
150 151 9.806203 CATGGCAGATGAATCAAAGTTAAATAA 57.194 29.630 0.00 0.00 0.00 1.40
151 152 8.415553 CCATGGCAGATGAATCAAAGTTAAATA 58.584 33.333 0.00 0.00 0.00 1.40
152 153 7.270047 CCATGGCAGATGAATCAAAGTTAAAT 58.730 34.615 0.00 0.00 0.00 1.40
153 154 6.632909 CCATGGCAGATGAATCAAAGTTAAA 58.367 36.000 0.00 0.00 0.00 1.52
154 155 5.394443 GCCATGGCAGATGAATCAAAGTTAA 60.394 40.000 32.08 0.00 41.49 2.01
155 156 4.098349 GCCATGGCAGATGAATCAAAGTTA 59.902 41.667 32.08 0.00 41.49 2.24
156 157 3.118884 GCCATGGCAGATGAATCAAAGTT 60.119 43.478 32.08 0.00 41.49 2.66
157 158 2.429610 GCCATGGCAGATGAATCAAAGT 59.570 45.455 32.08 0.00 41.49 2.66
158 159 3.093717 GCCATGGCAGATGAATCAAAG 57.906 47.619 32.08 0.00 41.49 2.77
172 173 1.756950 ATTGCCAGAGCTGCCATGG 60.757 57.895 7.63 7.63 40.80 3.66
173 174 1.437573 CATTGCCAGAGCTGCCATG 59.562 57.895 0.00 0.00 40.80 3.66
174 175 1.756950 CCATTGCCAGAGCTGCCAT 60.757 57.895 0.00 0.00 40.80 4.40
175 176 2.361992 CCATTGCCAGAGCTGCCA 60.362 61.111 0.00 0.00 40.80 4.92
176 177 2.044650 TCCATTGCCAGAGCTGCC 60.045 61.111 0.00 0.00 40.80 4.85
177 178 0.465824 ATCTCCATTGCCAGAGCTGC 60.466 55.000 0.00 0.00 40.80 5.25
178 179 1.595466 GATCTCCATTGCCAGAGCTG 58.405 55.000 0.00 0.00 40.80 4.24
179 180 0.473326 GGATCTCCATTGCCAGAGCT 59.527 55.000 0.00 0.00 36.44 4.09
180 181 0.182061 TGGATCTCCATTGCCAGAGC 59.818 55.000 0.00 0.00 42.01 4.09
183 184 1.476471 GGTCTGGATCTCCATTGCCAG 60.476 57.143 0.00 0.00 46.46 4.85
184 185 0.548031 GGTCTGGATCTCCATTGCCA 59.452 55.000 0.00 0.00 46.46 4.92
185 186 0.842635 AGGTCTGGATCTCCATTGCC 59.157 55.000 0.00 3.04 46.46 4.52
186 187 1.964552 CAGGTCTGGATCTCCATTGC 58.035 55.000 0.00 0.00 46.46 3.56
205 206 1.623311 CCATGAAACAAAGGGGTTCCC 59.377 52.381 0.00 0.00 45.90 3.97
206 207 1.623311 CCCATGAAACAAAGGGGTTCC 59.377 52.381 0.00 0.00 37.66 3.62
210 211 3.773560 TCTTACCCATGAAACAAAGGGG 58.226 45.455 14.05 0.00 45.83 4.79
211 212 4.220602 CCTTCTTACCCATGAAACAAAGGG 59.779 45.833 0.00 9.86 46.96 3.95
212 213 4.832823 ACCTTCTTACCCATGAAACAAAGG 59.167 41.667 0.00 2.91 37.39 3.11
213 214 5.278957 CCACCTTCTTACCCATGAAACAAAG 60.279 44.000 0.00 0.00 0.00 2.77
214 215 4.586841 CCACCTTCTTACCCATGAAACAAA 59.413 41.667 0.00 0.00 0.00 2.83
215 216 4.148838 CCACCTTCTTACCCATGAAACAA 58.851 43.478 0.00 0.00 0.00 2.83
216 217 3.499563 CCCACCTTCTTACCCATGAAACA 60.500 47.826 0.00 0.00 0.00 2.83
217 218 3.089284 CCCACCTTCTTACCCATGAAAC 58.911 50.000 0.00 0.00 0.00 2.78
218 219 2.990284 TCCCACCTTCTTACCCATGAAA 59.010 45.455 0.00 0.00 0.00 2.69
219 220 2.576191 CTCCCACCTTCTTACCCATGAA 59.424 50.000 0.00 0.00 0.00 2.57
220 221 2.196595 CTCCCACCTTCTTACCCATGA 58.803 52.381 0.00 0.00 0.00 3.07
221 222 1.408822 GCTCCCACCTTCTTACCCATG 60.409 57.143 0.00 0.00 0.00 3.66
222 223 0.919710 GCTCCCACCTTCTTACCCAT 59.080 55.000 0.00 0.00 0.00 4.00
223 224 0.474854 TGCTCCCACCTTCTTACCCA 60.475 55.000 0.00 0.00 0.00 4.51
224 225 0.253327 CTGCTCCCACCTTCTTACCC 59.747 60.000 0.00 0.00 0.00 3.69
225 226 0.253327 CCTGCTCCCACCTTCTTACC 59.747 60.000 0.00 0.00 0.00 2.85
226 227 0.984995 ACCTGCTCCCACCTTCTTAC 59.015 55.000 0.00 0.00 0.00 2.34
227 228 2.467880 CTACCTGCTCCCACCTTCTTA 58.532 52.381 0.00 0.00 0.00 2.10
228 229 1.280457 CTACCTGCTCCCACCTTCTT 58.720 55.000 0.00 0.00 0.00 2.52
229 230 0.618968 CCTACCTGCTCCCACCTTCT 60.619 60.000 0.00 0.00 0.00 2.85
230 231 0.910088 ACCTACCTGCTCCCACCTTC 60.910 60.000 0.00 0.00 0.00 3.46
231 232 1.161113 ACCTACCTGCTCCCACCTT 59.839 57.895 0.00 0.00 0.00 3.50
232 233 1.613630 CACCTACCTGCTCCCACCT 60.614 63.158 0.00 0.00 0.00 4.00
233 234 2.990479 CACCTACCTGCTCCCACC 59.010 66.667 0.00 0.00 0.00 4.61
234 235 2.269241 GCACCTACCTGCTCCCAC 59.731 66.667 0.00 0.00 34.06 4.61
235 236 3.390521 CGCACCTACCTGCTCCCA 61.391 66.667 0.00 0.00 34.77 4.37
236 237 3.391382 ACGCACCTACCTGCTCCC 61.391 66.667 0.00 0.00 34.77 4.30
237 238 2.125512 CACGCACCTACCTGCTCC 60.126 66.667 0.00 0.00 34.77 4.70
238 239 2.125512 CCACGCACCTACCTGCTC 60.126 66.667 0.00 0.00 34.77 4.26
239 240 3.706373 CCCACGCACCTACCTGCT 61.706 66.667 0.00 0.00 34.77 4.24
240 241 4.778143 CCCCACGCACCTACCTGC 62.778 72.222 0.00 0.00 0.00 4.85
241 242 2.119484 TTTCCCCACGCACCTACCTG 62.119 60.000 0.00 0.00 0.00 4.00
242 243 1.420532 TTTTCCCCACGCACCTACCT 61.421 55.000 0.00 0.00 0.00 3.08
243 244 0.537828 TTTTTCCCCACGCACCTACC 60.538 55.000 0.00 0.00 0.00 3.18
244 245 0.879090 CTTTTTCCCCACGCACCTAC 59.121 55.000 0.00 0.00 0.00 3.18
245 246 0.475044 ACTTTTTCCCCACGCACCTA 59.525 50.000 0.00 0.00 0.00 3.08
246 247 0.396556 AACTTTTTCCCCACGCACCT 60.397 50.000 0.00 0.00 0.00 4.00
247 248 0.249280 CAACTTTTTCCCCACGCACC 60.249 55.000 0.00 0.00 0.00 5.01
248 249 0.741915 TCAACTTTTTCCCCACGCAC 59.258 50.000 0.00 0.00 0.00 5.34
249 250 1.339610 CATCAACTTTTTCCCCACGCA 59.660 47.619 0.00 0.00 0.00 5.24
250 251 1.336795 CCATCAACTTTTTCCCCACGC 60.337 52.381 0.00 0.00 0.00 5.34
251 252 1.336795 GCCATCAACTTTTTCCCCACG 60.337 52.381 0.00 0.00 0.00 4.94
252 253 1.001974 GGCCATCAACTTTTTCCCCAC 59.998 52.381 0.00 0.00 0.00 4.61
253 254 1.347062 GGCCATCAACTTTTTCCCCA 58.653 50.000 0.00 0.00 0.00 4.96
254 255 1.276138 CTGGCCATCAACTTTTTCCCC 59.724 52.381 5.51 0.00 0.00 4.81
255 256 2.232208 CTCTGGCCATCAACTTTTTCCC 59.768 50.000 5.51 0.00 0.00 3.97
256 257 2.232208 CCTCTGGCCATCAACTTTTTCC 59.768 50.000 5.51 0.00 0.00 3.13
257 258 2.232208 CCCTCTGGCCATCAACTTTTTC 59.768 50.000 5.51 0.00 0.00 2.29
258 259 2.250924 CCCTCTGGCCATCAACTTTTT 58.749 47.619 5.51 0.00 0.00 1.94
259 260 1.928868 CCCTCTGGCCATCAACTTTT 58.071 50.000 5.51 0.00 0.00 2.27
260 261 3.677963 CCCTCTGGCCATCAACTTT 57.322 52.632 5.51 0.00 0.00 2.66
271 272 4.154347 GCTCTCACGGCCCTCTGG 62.154 72.222 0.00 0.00 0.00 3.86
272 273 2.570582 GAAGCTCTCACGGCCCTCTG 62.571 65.000 0.00 0.00 0.00 3.35
273 274 2.284258 AAGCTCTCACGGCCCTCT 60.284 61.111 0.00 0.00 0.00 3.69
274 275 2.185608 GAAGCTCTCACGGCCCTC 59.814 66.667 0.00 0.00 0.00 4.30
275 276 3.394836 GGAAGCTCTCACGGCCCT 61.395 66.667 0.00 0.00 0.00 5.19
276 277 4.821589 CGGAAGCTCTCACGGCCC 62.822 72.222 0.00 0.00 0.00 5.80
277 278 4.821589 CCGGAAGCTCTCACGGCC 62.822 72.222 0.00 0.00 39.85 6.13
278 279 3.708220 CTCCGGAAGCTCTCACGGC 62.708 68.421 5.23 0.00 45.58 5.68
280 281 2.492090 CCTCCGGAAGCTCTCACG 59.508 66.667 5.23 0.00 0.00 4.35
281 282 2.726351 CCCCTCCGGAAGCTCTCAC 61.726 68.421 5.23 0.00 0.00 3.51
282 283 2.364317 CCCCTCCGGAAGCTCTCA 60.364 66.667 5.23 0.00 0.00 3.27
283 284 2.042843 TCCCCTCCGGAAGCTCTC 60.043 66.667 5.23 0.00 37.88 3.20
284 285 2.042435 CTCCCCTCCGGAAGCTCT 60.042 66.667 5.23 0.00 41.40 4.09
285 286 3.157949 CCTCCCCTCCGGAAGCTC 61.158 72.222 5.23 0.00 41.40 4.09
286 287 4.806339 CCCTCCCCTCCGGAAGCT 62.806 72.222 5.23 0.00 41.40 3.74
287 288 4.798682 TCCCTCCCCTCCGGAAGC 62.799 72.222 5.23 0.00 41.40 3.86
288 289 2.040606 TTCCCTCCCCTCCGGAAG 59.959 66.667 5.23 0.00 41.40 3.46
289 290 2.040606 CTTCCCTCCCCTCCGGAA 59.959 66.667 5.23 0.00 41.40 4.30
290 291 4.089757 CCTTCCCTCCCCTCCGGA 62.090 72.222 2.93 2.93 38.83 5.14
293 294 4.760220 TGCCCTTCCCTCCCCTCC 62.760 72.222 0.00 0.00 0.00 4.30
294 295 3.412408 GTGCCCTTCCCTCCCCTC 61.412 72.222 0.00 0.00 0.00 4.30
297 298 4.410400 CACGTGCCCTTCCCTCCC 62.410 72.222 0.82 0.00 0.00 4.30
298 299 2.670148 ATCACGTGCCCTTCCCTCC 61.670 63.158 11.67 0.00 0.00 4.30
299 300 1.450312 CATCACGTGCCCTTCCCTC 60.450 63.158 11.67 0.00 0.00 4.30
300 301 2.671070 CATCACGTGCCCTTCCCT 59.329 61.111 11.67 0.00 0.00 4.20
301 302 2.438434 CCATCACGTGCCCTTCCC 60.438 66.667 11.67 0.00 0.00 3.97
302 303 1.745489 GACCATCACGTGCCCTTCC 60.745 63.158 11.67 0.00 0.00 3.46
303 304 1.745489 GGACCATCACGTGCCCTTC 60.745 63.158 11.67 4.64 0.00 3.46
304 305 2.351276 GGACCATCACGTGCCCTT 59.649 61.111 11.67 0.00 0.00 3.95
305 306 4.082523 CGGACCATCACGTGCCCT 62.083 66.667 11.67 0.00 0.00 5.19
309 310 4.429212 TCGCCGGACCATCACGTG 62.429 66.667 9.94 9.94 0.00 4.49
310 311 4.430765 GTCGCCGGACCATCACGT 62.431 66.667 5.05 0.00 37.19 4.49
318 319 2.869503 ATTGGATGTGGTCGCCGGAC 62.870 60.000 5.05 0.00 42.66 4.79
319 320 2.665089 ATTGGATGTGGTCGCCGGA 61.665 57.895 5.05 0.00 0.00 5.14
320 321 2.124736 ATTGGATGTGGTCGCCGG 60.125 61.111 0.00 0.00 0.00 6.13
321 322 3.101209 CATTGGATGTGGTCGCCG 58.899 61.111 0.00 0.00 0.00 6.46
322 323 2.774799 GGCATTGGATGTGGTCGCC 61.775 63.158 0.00 0.00 0.00 5.54
323 324 1.750399 AGGCATTGGATGTGGTCGC 60.750 57.895 0.00 0.00 0.00 5.19
324 325 0.392863 TCAGGCATTGGATGTGGTCG 60.393 55.000 0.00 0.00 0.00 4.79
325 326 2.062971 ATCAGGCATTGGATGTGGTC 57.937 50.000 0.00 0.00 0.00 4.02
326 327 2.498481 CAAATCAGGCATTGGATGTGGT 59.502 45.455 0.00 0.00 0.00 4.16
327 328 2.498481 ACAAATCAGGCATTGGATGTGG 59.502 45.455 0.00 0.00 33.84 4.17
328 329 3.880047 ACAAATCAGGCATTGGATGTG 57.120 42.857 0.00 0.00 35.34 3.21
329 330 3.055675 CCAACAAATCAGGCATTGGATGT 60.056 43.478 0.00 0.00 42.04 3.06
330 331 3.527533 CCAACAAATCAGGCATTGGATG 58.472 45.455 0.00 0.00 42.04 3.51
331 332 2.502538 CCCAACAAATCAGGCATTGGAT 59.497 45.455 2.89 0.00 42.04 3.41
332 333 1.901159 CCCAACAAATCAGGCATTGGA 59.099 47.619 2.89 0.00 42.04 3.53
333 334 1.624813 ACCCAACAAATCAGGCATTGG 59.375 47.619 0.00 0.00 39.67 3.16
334 335 3.405823 AACCCAACAAATCAGGCATTG 57.594 42.857 0.00 0.00 0.00 2.82
335 336 3.390639 TCAAACCCAACAAATCAGGCATT 59.609 39.130 0.00 0.00 0.00 3.56
336 337 2.971330 TCAAACCCAACAAATCAGGCAT 59.029 40.909 0.00 0.00 0.00 4.40
337 338 2.392662 TCAAACCCAACAAATCAGGCA 58.607 42.857 0.00 0.00 0.00 4.75
338 339 3.328505 CATCAAACCCAACAAATCAGGC 58.671 45.455 0.00 0.00 0.00 4.85
339 340 3.328505 GCATCAAACCCAACAAATCAGG 58.671 45.455 0.00 0.00 0.00 3.86
340 341 2.988493 CGCATCAAACCCAACAAATCAG 59.012 45.455 0.00 0.00 0.00 2.90
341 342 2.865670 GCGCATCAAACCCAACAAATCA 60.866 45.455 0.30 0.00 0.00 2.57
342 343 1.726248 GCGCATCAAACCCAACAAATC 59.274 47.619 0.30 0.00 0.00 2.17
343 344 1.607767 GGCGCATCAAACCCAACAAAT 60.608 47.619 10.83 0.00 0.00 2.32
344 345 0.249657 GGCGCATCAAACCCAACAAA 60.250 50.000 10.83 0.00 0.00 2.83
345 346 1.112315 AGGCGCATCAAACCCAACAA 61.112 50.000 10.83 0.00 0.00 2.83
346 347 1.112315 AAGGCGCATCAAACCCAACA 61.112 50.000 10.83 0.00 0.00 3.33
347 348 0.033366 AAAGGCGCATCAAACCCAAC 59.967 50.000 10.83 0.00 0.00 3.77
348 349 0.033228 CAAAGGCGCATCAAACCCAA 59.967 50.000 10.83 0.00 0.00 4.12
349 350 1.112315 ACAAAGGCGCATCAAACCCA 61.112 50.000 10.83 0.00 0.00 4.51
350 351 0.033366 AACAAAGGCGCATCAAACCC 59.967 50.000 10.83 0.00 0.00 4.11
351 352 1.139163 CAACAAAGGCGCATCAAACC 58.861 50.000 10.83 0.00 0.00 3.27
352 353 0.508213 GCAACAAAGGCGCATCAAAC 59.492 50.000 10.83 0.00 0.00 2.93
353 354 0.388659 AGCAACAAAGGCGCATCAAA 59.611 45.000 10.83 0.00 36.08 2.69
354 355 1.242989 TAGCAACAAAGGCGCATCAA 58.757 45.000 10.83 0.00 36.08 2.57
355 356 1.462616 ATAGCAACAAAGGCGCATCA 58.537 45.000 10.83 0.00 36.08 3.07
356 357 2.187707 CAATAGCAACAAAGGCGCATC 58.812 47.619 10.83 0.00 36.08 3.91
357 358 1.135024 CCAATAGCAACAAAGGCGCAT 60.135 47.619 10.83 0.00 36.08 4.73
358 359 0.243365 CCAATAGCAACAAAGGCGCA 59.757 50.000 10.83 0.00 36.08 6.09
359 360 0.458370 CCCAATAGCAACAAAGGCGC 60.458 55.000 0.00 0.00 36.08 6.53
360 361 0.173255 CCCCAATAGCAACAAAGGCG 59.827 55.000 0.00 0.00 36.08 5.52
361 362 0.536724 CCCCCAATAGCAACAAAGGC 59.463 55.000 0.00 0.00 0.00 4.35
362 363 2.102578 CTCCCCCAATAGCAACAAAGG 58.897 52.381 0.00 0.00 0.00 3.11
363 364 2.102578 CCTCCCCCAATAGCAACAAAG 58.897 52.381 0.00 0.00 0.00 2.77
364 365 1.272985 CCCTCCCCCAATAGCAACAAA 60.273 52.381 0.00 0.00 0.00 2.83
365 366 0.334676 CCCTCCCCCAATAGCAACAA 59.665 55.000 0.00 0.00 0.00 2.83
366 367 2.006748 CCCTCCCCCAATAGCAACA 58.993 57.895 0.00 0.00 0.00 3.33
367 368 1.455773 GCCCTCCCCCAATAGCAAC 60.456 63.158 0.00 0.00 0.00 4.17
368 369 1.221213 AAGCCCTCCCCCAATAGCAA 61.221 55.000 0.00 0.00 0.00 3.91
369 370 1.221213 AAAGCCCTCCCCCAATAGCA 61.221 55.000 0.00 0.00 0.00 3.49
370 371 0.032117 AAAAGCCCTCCCCCAATAGC 60.032 55.000 0.00 0.00 0.00 2.97
371 372 2.550277 AAAAAGCCCTCCCCCAATAG 57.450 50.000 0.00 0.00 0.00 1.73
389 390 1.004277 CTGTCCCCGATCCCAGAAAAA 59.996 52.381 0.00 0.00 0.00 1.94
390 391 0.618458 CTGTCCCCGATCCCAGAAAA 59.382 55.000 0.00 0.00 0.00 2.29
391 392 1.271840 CCTGTCCCCGATCCCAGAAA 61.272 60.000 0.00 0.00 0.00 2.52
392 393 1.689233 CCTGTCCCCGATCCCAGAA 60.689 63.158 0.00 0.00 0.00 3.02
393 394 1.961381 ATCCTGTCCCCGATCCCAGA 61.961 60.000 0.00 0.00 0.00 3.86
394 395 1.460305 ATCCTGTCCCCGATCCCAG 60.460 63.158 0.00 0.00 0.00 4.45
395 396 1.459539 GATCCTGTCCCCGATCCCA 60.460 63.158 0.00 0.00 30.64 4.37
396 397 0.764752 AAGATCCTGTCCCCGATCCC 60.765 60.000 0.00 0.00 36.36 3.85
397 398 1.070914 GAAAGATCCTGTCCCCGATCC 59.929 57.143 0.00 0.00 36.36 3.36
398 399 1.070914 GGAAAGATCCTGTCCCCGATC 59.929 57.143 0.00 0.00 42.93 3.69
399 400 1.132500 GGAAAGATCCTGTCCCCGAT 58.868 55.000 0.00 0.00 42.93 4.18
400 401 2.604118 GGAAAGATCCTGTCCCCGA 58.396 57.895 0.00 0.00 42.93 5.14
428 429 4.189580 TAGCATTCCCCAGCGGCC 62.190 66.667 0.00 0.00 35.48 6.13
429 430 2.592861 CTAGCATTCCCCAGCGGC 60.593 66.667 0.00 0.00 35.48 6.53
430 431 2.111878 CCTAGCATTCCCCAGCGG 59.888 66.667 0.00 0.00 35.48 5.52
431 432 2.111878 CCCTAGCATTCCCCAGCG 59.888 66.667 0.00 0.00 35.48 5.18
432 433 1.453669 CTCCCTAGCATTCCCCAGC 59.546 63.158 0.00 0.00 0.00 4.85
460 461 1.099879 TAAGGACGCGTCTAGGGAGC 61.100 60.000 35.50 18.86 36.53 4.70
461 462 1.606903 ATAAGGACGCGTCTAGGGAG 58.393 55.000 35.50 0.00 36.53 4.30
462 463 2.062971 AATAAGGACGCGTCTAGGGA 57.937 50.000 35.50 18.44 36.53 4.20
463 464 2.100252 TCAAATAAGGACGCGTCTAGGG 59.900 50.000 35.50 19.39 38.93 3.53
464 465 3.431922 TCAAATAAGGACGCGTCTAGG 57.568 47.619 35.50 18.90 0.00 3.02
465 466 5.119588 TGTTTTCAAATAAGGACGCGTCTAG 59.880 40.000 35.50 18.23 0.00 2.43
466 467 4.989797 TGTTTTCAAATAAGGACGCGTCTA 59.010 37.500 35.50 22.86 0.00 2.59
467 468 3.810941 TGTTTTCAAATAAGGACGCGTCT 59.189 39.130 35.50 21.43 0.00 4.18
468 469 4.136517 TGTTTTCAAATAAGGACGCGTC 57.863 40.909 30.67 30.67 0.00 5.19
469 470 4.472286 CATGTTTTCAAATAAGGACGCGT 58.528 39.130 13.85 13.85 0.00 6.01
470 471 3.300590 GCATGTTTTCAAATAAGGACGCG 59.699 43.478 3.53 3.53 0.00 6.01
471 472 4.233789 TGCATGTTTTCAAATAAGGACGC 58.766 39.130 0.00 0.00 0.00 5.19
472 473 5.345741 CCTTGCATGTTTTCAAATAAGGACG 59.654 40.000 0.00 0.00 38.27 4.79
473 474 6.223120 ACCTTGCATGTTTTCAAATAAGGAC 58.777 36.000 0.00 0.00 38.79 3.85
474 475 6.418057 ACCTTGCATGTTTTCAAATAAGGA 57.582 33.333 0.00 0.00 38.79 3.36
475 476 6.890558 CAACCTTGCATGTTTTCAAATAAGG 58.109 36.000 0.00 0.00 40.00 2.69
495 496 3.728864 CGCATGTACTCAAAGATGCAACC 60.729 47.826 12.43 0.00 44.19 3.77
499 500 5.006649 TGTTATCGCATGTACTCAAAGATGC 59.993 40.000 4.03 4.03 41.44 3.91
554 564 7.003939 TGACAAGCGTGACATATTCAAATAG 57.996 36.000 6.65 0.00 35.39 1.73
564 574 3.728845 ACTAAGTTGACAAGCGTGACAT 58.271 40.909 6.65 0.00 29.49 3.06
572 582 8.976986 AGGTAATACGTAACTAAGTTGACAAG 57.023 34.615 0.00 0.00 0.00 3.16
583 593 3.243201 GCGGCAGTAGGTAATACGTAACT 60.243 47.826 0.00 0.00 39.55 2.24
616 634 2.076100 GTCCAACATGCGTCTCAATCA 58.924 47.619 0.00 0.00 0.00 2.57
621 639 0.924090 GATCGTCCAACATGCGTCTC 59.076 55.000 0.00 0.00 0.00 3.36
632 650 0.246360 ACATGCGTCTTGATCGTCCA 59.754 50.000 0.00 0.00 0.00 4.02
634 652 0.025513 GCACATGCGTCTTGATCGTC 59.974 55.000 0.00 0.00 0.00 4.20
640 658 1.678360 GACTTTGCACATGCGTCTTG 58.322 50.000 0.00 0.00 45.83 3.02
646 664 0.310543 TTCCACGACTTTGCACATGC 59.689 50.000 0.00 0.00 42.50 4.06
658 676 4.448210 ACTTTCAAACTAGCTTTCCACGA 58.552 39.130 0.00 0.00 0.00 4.35
666 684 4.021016 ACCTGATCGACTTTCAAACTAGCT 60.021 41.667 0.00 0.00 0.00 3.32
670 688 4.336889 TGACCTGATCGACTTTCAAACT 57.663 40.909 0.00 0.00 0.00 2.66
770 788 4.537135 TTCGTAATGAGGAAGAAGCACT 57.463 40.909 0.00 0.00 0.00 4.40
789 807 9.430623 GTCTATATAGGAATCTCCTTGCTTTTC 57.569 37.037 9.89 0.00 46.91 2.29
872 890 2.818130 TGCAAAGGGAATGTTTCAGC 57.182 45.000 0.00 0.00 0.00 4.26
887 905 4.142204 TGCTTGTCTTGTTTCTCATTGCAA 60.142 37.500 0.00 0.00 0.00 4.08
890 908 5.806502 TGTTTGCTTGTCTTGTTTCTCATTG 59.193 36.000 0.00 0.00 0.00 2.82
900 918 5.799681 AACCAATTTGTTTGCTTGTCTTG 57.200 34.783 0.00 0.00 33.73 3.02
983 1002 1.374560 TGTGTTTGTGTTCCCTCGTG 58.625 50.000 0.00 0.00 0.00 4.35
1059 1078 4.890581 CAGTATTACCAGCAGTAGGAGAGT 59.109 45.833 0.00 0.00 30.92 3.24
1123 1142 3.790089 AATTGAGAAAGGACTCGGGTT 57.210 42.857 0.00 0.00 39.49 4.11
1135 1154 6.713762 TCAGGAAAGAAAGCAAATTGAGAA 57.286 33.333 0.00 0.00 0.00 2.87
1363 1397 6.037172 GGTGAGCAAATCATGACTAATACGTT 59.963 38.462 0.00 0.00 40.92 3.99
1375 1427 5.954150 AGTAAAATGAGGGTGAGCAAATCAT 59.046 36.000 0.00 0.00 40.92 2.45
1515 1580 2.890311 CAGGAGCCTATAGGACTGACAG 59.110 54.545 23.61 0.00 36.03 3.51
1536 1601 5.060662 TGCAAGTAGATACGATGATAGCC 57.939 43.478 0.00 0.00 0.00 3.93
1925 2247 1.202758 TGTGGCGTTGAAATCCTGACT 60.203 47.619 0.00 0.00 0.00 3.41
2329 2651 2.523016 GGGCCATCATTCCCTCCC 59.477 66.667 4.39 0.00 39.46 4.30
2416 2744 1.687563 TCCGAGCGATATCAAGGTCA 58.312 50.000 3.12 0.00 34.85 4.02
2441 2769 1.332375 GCACGTACCACAAGCTTTTCA 59.668 47.619 0.00 0.00 0.00 2.69
2499 2856 4.833390 CCCCGGATCTATTATTTCCTCAC 58.167 47.826 0.73 0.00 0.00 3.51
2509 2866 6.187682 CCAATTTTATAGCCCCGGATCTATT 58.812 40.000 16.89 2.69 0.00 1.73
2612 2972 1.212935 GGAATCAGGGAAAGCTGGCTA 59.787 52.381 0.00 0.00 0.00 3.93
2663 3023 4.706962 GTGAAGAGATTGCCCCTGTATTTT 59.293 41.667 0.00 0.00 0.00 1.82
2707 3067 2.501261 ACAAGGTCTTTAAAGTCGCCC 58.499 47.619 14.74 10.46 0.00 6.13
3130 3493 1.877680 CGACATGCACTCACCCTTTGA 60.878 52.381 0.00 0.00 0.00 2.69
3218 3591 1.369625 CTTCACCACCGCATTCCTAC 58.630 55.000 0.00 0.00 0.00 3.18
3631 4011 1.979855 TCAATGTTCACACCTGTGGG 58.020 50.000 5.60 0.00 45.65 4.61
4165 4552 0.325933 CTGACCATGTCAAGCTCCCA 59.674 55.000 0.00 0.00 42.26 4.37
4475 4866 3.432326 CCATGGTTGTCCCTTACTCTAGC 60.432 52.174 2.57 0.00 0.00 3.42
4543 4934 5.460091 GTGTTGATTTCCTTTCACTTTCAGC 59.540 40.000 0.00 0.00 0.00 4.26
4556 4947 8.424274 AAGAAAATTCAGTTGTGTTGATTTCC 57.576 30.769 0.00 0.00 0.00 3.13
4585 4976 8.607441 TCTATGAATTCAGTGATATTTTCCCG 57.393 34.615 14.54 0.00 0.00 5.14
4808 5223 2.644798 ACCTGGCTAAGAACCATGTCTT 59.355 45.455 4.22 4.22 40.89 3.01
4890 5349 8.282256 AGTTATTAAGGATTAACATGGAGCCTT 58.718 33.333 16.31 16.31 44.35 4.35
5167 7021 6.763610 GGAAGAATATGAGGAGACGTGATTTT 59.236 38.462 0.00 0.00 0.00 1.82
5351 8267 1.066573 CGGCAGTTCACATCCTTCTCT 60.067 52.381 0.00 0.00 0.00 3.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.