Multiple sequence alignment - TraesCS7A01G118100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G118100 chr7A 100.000 5449 0 0 1 5449 76295226 76289778 0.000000e+00 10063.0
1 TraesCS7A01G118100 chr7A 82.611 2030 279 44 2842 4828 76426444 76424446 0.000000e+00 1725.0
2 TraesCS7A01G118100 chr7A 82.512 2030 281 44 2842 4828 76399748 76397750 0.000000e+00 1714.0
3 TraesCS7A01G118100 chr7A 82.239 2010 280 42 2866 4828 76482730 76480751 0.000000e+00 1663.0
4 TraesCS7A01G118100 chr7A 83.050 1823 269 30 3033 4837 76356473 76354673 0.000000e+00 1618.0
5 TraesCS7A01G118100 chr7A 82.885 1823 272 30 3033 4837 76420680 76418880 0.000000e+00 1602.0
6 TraesCS7A01G118100 chr7A 84.160 1673 230 27 3179 4837 76393836 76392185 0.000000e+00 1589.0
7 TraesCS7A01G118100 chr7A 82.382 1822 283 26 3033 4837 76454146 76452346 0.000000e+00 1552.0
8 TraesCS7A01G118100 chr7A 84.521 982 147 4 1541 2520 76427766 76426788 0.000000e+00 966.0
9 TraesCS7A01G118100 chr7A 84.420 982 148 4 1541 2520 76401070 76400092 0.000000e+00 961.0
10 TraesCS7A01G118100 chr7D 94.469 5117 210 34 169 5261 69713386 69708319 0.000000e+00 7814.0
11 TraesCS7A01G118100 chr7D 82.633 1785 260 35 3058 4821 69782638 69780883 0.000000e+00 1533.0
12 TraesCS7A01G118100 chr7D 80.129 2013 309 61 2844 4828 69800669 69798720 0.000000e+00 1417.0
13 TraesCS7A01G118100 chr7D 85.850 1265 134 25 2837 4065 69719082 69717827 0.000000e+00 1303.0
14 TraesCS7A01G118100 chr7D 84.885 1171 152 16 1547 2710 69720491 69719339 0.000000e+00 1158.0
15 TraesCS7A01G118100 chr7D 84.483 986 142 10 1541 2520 69813482 69812502 0.000000e+00 963.0
16 TraesCS7A01G118100 chr7D 84.290 923 131 10 1365 2280 69807750 69806835 0.000000e+00 889.0
17 TraesCS7A01G118100 chr7D 78.478 999 168 33 2844 3817 69776951 69775975 1.300000e-170 610.0
18 TraesCS7A01G118100 chr7D 78.532 722 105 21 2884 3561 69812092 69811377 3.900000e-116 429.0
19 TraesCS7A01G118100 chr7D 90.536 317 26 2 1199 1512 69720805 69720490 3.040000e-112 416.0
20 TraesCS7A01G118100 chr7D 98.429 191 3 0 5259 5449 69697333 69697143 2.430000e-88 337.0
21 TraesCS7A01G118100 chr7D 83.333 264 31 9 5198 5449 69716803 69716541 1.180000e-56 231.0
22 TraesCS7A01G118100 chr6A 90.837 1648 131 9 829 2471 106734491 106736123 0.000000e+00 2189.0
23 TraesCS7A01G118100 chr6A 82.719 1846 246 56 3019 4833 106736524 106738327 0.000000e+00 1574.0
24 TraesCS7A01G118100 chr6A 91.398 279 23 1 455 733 106733872 106734149 1.110000e-101 381.0
25 TraesCS7A01G118100 chr7B 82.283 2032 285 41 2842 4824 12381955 12379950 0.000000e+00 1688.0
26 TraesCS7A01G118100 chr7B 83.756 1816 249 31 3032 4827 12364879 12363090 0.000000e+00 1677.0
27 TraesCS7A01G118100 chr7B 79.934 1809 291 55 2859 4632 12206235 12204464 0.000000e+00 1264.0
28 TraesCS7A01G118100 chr7B 84.495 1090 156 10 1392 2473 12366270 12365186 0.000000e+00 1064.0
29 TraesCS7A01G118100 chr7B 83.927 983 151 5 1541 2520 12383293 12382315 0.000000e+00 933.0
30 TraesCS7A01G118100 chr7B 81.059 982 149 22 1201 2155 12198274 12197303 0.000000e+00 749.0
31 TraesCS7A01G118100 chr7B 86.364 308 35 3 1231 1533 12383719 12383414 4.070000e-86 329.0
32 TraesCS7A01G118100 chr7B 82.155 297 36 12 1201 1494 12231908 12231626 7.050000e-59 239.0
33 TraesCS7A01G118100 chr7B 86.316 95 13 0 997 1091 12208349 12208255 2.680000e-18 104.0
34 TraesCS7A01G118100 chrUn 80.831 1252 184 31 2842 4054 386059009 386057775 0.000000e+00 931.0
35 TraesCS7A01G118100 chr5D 92.857 168 9 1 1 168 541688716 541688552 1.960000e-59 241.0
36 TraesCS7A01G118100 chr5D 92.262 168 12 1 2 169 481569488 481569322 2.540000e-58 237.0
37 TraesCS7A01G118100 chr5A 92.683 164 7 3 1 163 603385070 603384911 1.180000e-56 231.0
38 TraesCS7A01G118100 chr5A 90.588 170 14 1 1 170 650287796 650287963 1.980000e-54 224.0
39 TraesCS7A01G118100 chr5A 89.881 168 14 1 1 168 622763487 622763651 4.280000e-51 213.0
40 TraesCS7A01G118100 chr6B 95.192 104 5 0 66 169 519220587 519220690 1.210000e-36 165.0
41 TraesCS7A01G118100 chr1D 90.435 115 11 0 54 168 415983784 415983670 9.450000e-33 152.0
42 TraesCS7A01G118100 chr1D 95.556 45 1 1 15 59 415984206 415984163 2.720000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G118100 chr7A 76289778 76295226 5448 True 10063.000000 10063 100.000000 1 5449 1 chr7A.!!$R1 5448
1 TraesCS7A01G118100 chr7A 76480751 76482730 1979 True 1663.000000 1663 82.239000 2866 4828 1 chr7A.!!$R4 1962
2 TraesCS7A01G118100 chr7A 76354673 76356473 1800 True 1618.000000 1618 83.050000 3033 4837 1 chr7A.!!$R2 1804
3 TraesCS7A01G118100 chr7A 76452346 76454146 1800 True 1552.000000 1552 82.382000 3033 4837 1 chr7A.!!$R3 1804
4 TraesCS7A01G118100 chr7A 76418880 76427766 8886 True 1431.000000 1725 83.339000 1541 4837 3 chr7A.!!$R6 3296
5 TraesCS7A01G118100 chr7A 76392185 76401070 8885 True 1421.333333 1714 83.697333 1541 4837 3 chr7A.!!$R5 3296
6 TraesCS7A01G118100 chr7D 69708319 69720805 12486 True 2184.400000 7814 87.814600 169 5449 5 chr7D.!!$R3 5280
7 TraesCS7A01G118100 chr7D 69798720 69800669 1949 True 1417.000000 1417 80.129000 2844 4828 1 chr7D.!!$R2 1984
8 TraesCS7A01G118100 chr7D 69775975 69782638 6663 True 1071.500000 1533 80.555500 2844 4821 2 chr7D.!!$R4 1977
9 TraesCS7A01G118100 chr7D 69806835 69813482 6647 True 760.333333 963 82.435000 1365 3561 3 chr7D.!!$R5 2196
10 TraesCS7A01G118100 chr6A 106733872 106738327 4455 False 1381.333333 2189 88.318000 455 4833 3 chr6A.!!$F1 4378
11 TraesCS7A01G118100 chr7B 12363090 12366270 3180 True 1370.500000 1677 84.125500 1392 4827 2 chr7B.!!$R4 3435
12 TraesCS7A01G118100 chr7B 12379950 12383719 3769 True 983.333333 1688 84.191333 1231 4824 3 chr7B.!!$R5 3593
13 TraesCS7A01G118100 chr7B 12197303 12198274 971 True 749.000000 749 81.059000 1201 2155 1 chr7B.!!$R1 954
14 TraesCS7A01G118100 chr7B 12204464 12208349 3885 True 684.000000 1264 83.125000 997 4632 2 chr7B.!!$R3 3635
15 TraesCS7A01G118100 chrUn 386057775 386059009 1234 True 931.000000 931 80.831000 2842 4054 1 chrUn.!!$R1 1212

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
165 166 0.035739 TTAAACTCCAGGACCGGTGC 59.964 55.0 19.86 19.86 0.00 5.01 F
204 7455 0.464452 ATACCGCTACTGCTTCCACC 59.536 55.0 0.00 0.00 36.97 4.61 F
1043 8564 0.742635 GGTGCTCTCCTGCTACTTGC 60.743 60.0 0.00 0.00 43.25 4.01 F
2093 9958 0.459585 GACTATCGCTGGCACGGAAA 60.460 55.0 9.05 0.00 36.31 3.13 F
2434 10299 0.598158 TTGACCGTTCTTTCCCGACG 60.598 55.0 0.00 0.00 36.61 5.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1949 9814 1.134175 CTTTCGGTTGCAACTTGTGGT 59.866 47.619 27.64 0.0 0.00 4.16 R
2093 9958 1.219124 CGTAGCTCACACCCTGCAT 59.781 57.895 0.00 0.0 0.00 3.96 R
2274 10139 0.842030 TGGGAGCTCATGACCAACCT 60.842 55.000 17.19 0.0 0.00 3.50 R
4022 12391 0.320073 CGTCGTAAACCAAGCCAGGA 60.320 55.000 0.00 0.0 0.00 3.86 R
4925 18864 6.542852 GCTAAAGATCGTGATAGCACAAAAA 58.457 36.000 12.28 0.0 45.41 1.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.385668 GAACAGATGAATTTATTGGATTGCG 57.614 36.000 0.00 0.00 0.00 4.85
25 26 5.835257 ACAGATGAATTTATTGGATTGCGG 58.165 37.500 0.00 0.00 0.00 5.69
28 29 6.639686 CAGATGAATTTATTGGATTGCGGAAG 59.360 38.462 0.00 0.00 0.00 3.46
29 30 5.261209 TGAATTTATTGGATTGCGGAAGG 57.739 39.130 0.00 0.00 0.00 3.46
31 32 2.818751 TTATTGGATTGCGGAAGGGT 57.181 45.000 0.00 0.00 0.00 4.34
32 33 2.051334 TATTGGATTGCGGAAGGGTG 57.949 50.000 0.00 0.00 0.00 4.61
35 36 1.223487 GGATTGCGGAAGGGTGCTA 59.777 57.895 0.00 0.00 0.00 3.49
36 37 0.179018 GGATTGCGGAAGGGTGCTAT 60.179 55.000 0.00 0.00 0.00 2.97
37 38 1.230324 GATTGCGGAAGGGTGCTATC 58.770 55.000 0.00 0.00 36.50 2.08
38 39 0.546122 ATTGCGGAAGGGTGCTATCA 59.454 50.000 0.00 0.00 0.00 2.15
39 40 0.326595 TTGCGGAAGGGTGCTATCAA 59.673 50.000 0.00 0.00 0.00 2.57
41 42 0.947244 GCGGAAGGGTGCTATCAATG 59.053 55.000 0.00 0.00 0.00 2.82
42 43 1.475034 GCGGAAGGGTGCTATCAATGA 60.475 52.381 0.00 0.00 0.00 2.57
43 44 2.811873 GCGGAAGGGTGCTATCAATGAT 60.812 50.000 0.00 0.00 0.00 2.45
45 46 3.885297 CGGAAGGGTGCTATCAATGATTT 59.115 43.478 0.00 0.00 0.00 2.17
47 48 5.530915 CGGAAGGGTGCTATCAATGATTTTA 59.469 40.000 0.00 0.00 0.00 1.52
48 49 6.207417 CGGAAGGGTGCTATCAATGATTTTAT 59.793 38.462 0.00 0.00 0.00 1.40
50 51 9.077885 GGAAGGGTGCTATCAATGATTTTATTA 57.922 33.333 0.00 0.00 0.00 0.98
77 78 8.816640 AGCTTTTCACGATTGTTTTTATCAAT 57.183 26.923 0.00 0.00 38.08 2.57
78 79 8.702438 AGCTTTTCACGATTGTTTTTATCAATG 58.298 29.630 0.00 0.00 35.94 2.82
79 80 8.487176 GCTTTTCACGATTGTTTTTATCAATGT 58.513 29.630 0.00 0.00 35.94 2.71
83 84 9.566530 TTCACGATTGTTTTTATCAATGTATGG 57.433 29.630 0.00 0.00 35.94 2.74
84 85 8.951243 TCACGATTGTTTTTATCAATGTATGGA 58.049 29.630 0.00 0.00 35.94 3.41
85 86 9.566530 CACGATTGTTTTTATCAATGTATGGAA 57.433 29.630 0.00 0.00 35.94 3.53
100 101 9.101655 CAATGTATGGAATCAAAATTTTCCTCC 57.898 33.333 0.00 7.80 41.65 4.30
101 102 7.789202 TGTATGGAATCAAAATTTTCCTCCA 57.211 32.000 19.84 19.84 41.65 3.86
102 103 8.200024 TGTATGGAATCAAAATTTTCCTCCAA 57.800 30.769 20.78 12.23 41.65 3.53
103 104 8.824783 TGTATGGAATCAAAATTTTCCTCCAAT 58.175 29.630 20.78 14.62 41.65 3.16
104 105 9.101655 GTATGGAATCAAAATTTTCCTCCAATG 57.898 33.333 20.78 3.42 41.65 2.82
105 106 7.077050 TGGAATCAAAATTTTCCTCCAATGT 57.923 32.000 17.10 0.00 41.65 2.71
106 107 7.160726 TGGAATCAAAATTTTCCTCCAATGTC 58.839 34.615 17.10 1.56 41.65 3.06
107 108 7.016465 TGGAATCAAAATTTTCCTCCAATGTCT 59.984 33.333 17.10 0.00 41.65 3.41
108 109 7.879677 GGAATCAAAATTTTCCTCCAATGTCTT 59.120 33.333 13.81 0.00 38.68 3.01
109 110 8.837788 AATCAAAATTTTCCTCCAATGTCTTC 57.162 30.769 0.00 0.00 0.00 2.87
110 111 6.446318 TCAAAATTTTCCTCCAATGTCTTCG 58.554 36.000 0.00 0.00 0.00 3.79
113 114 2.099141 TTCCTCCAATGTCTTCGCTG 57.901 50.000 0.00 0.00 0.00 5.18
114 115 0.250234 TCCTCCAATGTCTTCGCTGG 59.750 55.000 0.00 0.00 0.00 4.85
115 116 0.745845 CCTCCAATGTCTTCGCTGGG 60.746 60.000 0.00 0.00 0.00 4.45
116 117 1.372087 CTCCAATGTCTTCGCTGGGC 61.372 60.000 0.00 0.00 0.00 5.36
117 118 2.409870 CCAATGTCTTCGCTGGGCC 61.410 63.158 0.00 0.00 0.00 5.80
119 120 2.905996 AATGTCTTCGCTGGGCCCA 61.906 57.895 26.67 26.67 0.00 5.36
120 121 2.215451 AATGTCTTCGCTGGGCCCAT 62.215 55.000 28.82 3.25 0.00 4.00
122 123 2.115291 GTCTTCGCTGGGCCCATTC 61.115 63.158 28.82 19.36 0.00 2.67
125 126 1.000233 TTCGCTGGGCCCATTCATT 60.000 52.632 28.82 0.00 0.00 2.57
126 127 0.614415 TTCGCTGGGCCCATTCATTT 60.614 50.000 28.82 0.00 0.00 2.32
129 130 0.462789 GCTGGGCCCATTCATTTGAG 59.537 55.000 28.82 11.64 0.00 3.02
130 131 1.856629 CTGGGCCCATTCATTTGAGT 58.143 50.000 28.82 0.00 0.00 3.41
131 132 2.181975 CTGGGCCCATTCATTTGAGTT 58.818 47.619 28.82 0.00 0.00 3.01
132 133 2.167075 CTGGGCCCATTCATTTGAGTTC 59.833 50.000 28.82 0.00 0.00 3.01
133 134 1.134946 GGGCCCATTCATTTGAGTTCG 59.865 52.381 19.95 0.00 0.00 3.95
135 136 1.469767 GCCCATTCATTTGAGTTCGCC 60.470 52.381 0.00 0.00 0.00 5.54
136 137 1.134946 CCCATTCATTTGAGTTCGCCC 59.865 52.381 0.00 0.00 0.00 6.13
137 138 2.094675 CCATTCATTTGAGTTCGCCCT 58.905 47.619 0.00 0.00 0.00 5.19
138 139 2.159338 CCATTCATTTGAGTTCGCCCTG 60.159 50.000 0.00 0.00 0.00 4.45
139 140 1.533625 TTCATTTGAGTTCGCCCTGG 58.466 50.000 0.00 0.00 0.00 4.45
141 142 1.089920 CATTTGAGTTCGCCCTGGAG 58.910 55.000 0.00 0.00 0.00 3.86
142 143 0.678048 ATTTGAGTTCGCCCTGGAGC 60.678 55.000 0.00 0.00 0.00 4.70
143 144 2.748058 TTTGAGTTCGCCCTGGAGCC 62.748 60.000 0.00 0.00 0.00 4.70
144 145 3.394836 GAGTTCGCCCTGGAGCCT 61.395 66.667 0.00 0.00 0.00 4.58
145 146 3.378399 GAGTTCGCCCTGGAGCCTC 62.378 68.421 0.00 0.00 0.00 4.70
147 148 2.607750 TTCGCCCTGGAGCCTCTT 60.608 61.111 0.00 0.00 0.00 2.85
149 150 0.907704 TTCGCCCTGGAGCCTCTTAA 60.908 55.000 0.00 0.00 0.00 1.85
151 152 0.744771 CGCCCTGGAGCCTCTTAAAC 60.745 60.000 0.00 0.00 0.00 2.01
153 154 1.407575 GCCCTGGAGCCTCTTAAACTC 60.408 57.143 0.00 0.00 0.00 3.01
159 160 3.254470 GAGCCTCTTAAACTCCAGGAC 57.746 52.381 0.00 0.00 0.00 3.85
160 161 1.909986 AGCCTCTTAAACTCCAGGACC 59.090 52.381 0.00 0.00 0.00 4.46
162 163 1.207329 CCTCTTAAACTCCAGGACCGG 59.793 57.143 0.00 0.00 0.00 5.28
163 164 1.900486 CTCTTAAACTCCAGGACCGGT 59.100 52.381 6.92 6.92 0.00 5.28
164 165 1.621814 TCTTAAACTCCAGGACCGGTG 59.378 52.381 14.63 0.00 0.00 4.94
165 166 0.035739 TTAAACTCCAGGACCGGTGC 59.964 55.000 19.86 19.86 0.00 5.01
166 167 0.834687 TAAACTCCAGGACCGGTGCT 60.835 55.000 24.61 24.61 0.00 4.40
167 168 2.397413 AAACTCCAGGACCGGTGCTG 62.397 60.000 40.29 40.29 46.77 4.41
168 169 4.767255 CTCCAGGACCGGTGCTGC 62.767 72.222 41.42 16.26 46.01 5.25
170 171 4.335647 CCAGGACCGGTGCTGCTT 62.336 66.667 41.42 15.11 46.01 3.91
172 173 4.021925 AGGACCGGTGCTGCTTCC 62.022 66.667 29.42 13.30 0.00 3.46
187 7438 2.016393 CTTCCGGCCTCTGCGTCATA 62.016 60.000 0.00 0.00 38.85 2.15
204 7455 0.464452 ATACCGCTACTGCTTCCACC 59.536 55.000 0.00 0.00 36.97 4.61
217 7468 1.882623 CTTCCACCAGCTGTTTTCCTC 59.117 52.381 13.81 0.00 0.00 3.71
246 7497 2.997897 GTGACCTGGGAGCGAGGT 60.998 66.667 0.00 0.00 45.01 3.85
249 7500 4.361971 ACCTGGGAGCGAGGTCGA 62.362 66.667 2.94 0.00 38.13 4.20
262 7513 1.476891 GAGGTCGACTTGCATGTAGGA 59.523 52.381 16.46 3.76 0.00 2.94
271 7522 5.609423 GACTTGCATGTAGGATCTTCAGAT 58.391 41.667 5.05 0.00 37.51 2.90
285 7536 7.783090 GATCTTCAGATCTAATTTGCTGACA 57.217 36.000 9.25 0.00 45.60 3.58
286 7537 6.974932 TCTTCAGATCTAATTTGCTGACAC 57.025 37.500 0.00 0.00 37.14 3.67
287 7538 6.705302 TCTTCAGATCTAATTTGCTGACACT 58.295 36.000 0.00 0.00 37.14 3.55
288 7539 6.592994 TCTTCAGATCTAATTTGCTGACACTG 59.407 38.462 0.00 0.00 37.14 3.66
289 7540 6.041423 TCAGATCTAATTTGCTGACACTGA 57.959 37.500 0.00 0.00 32.85 3.41
290 7541 5.871524 TCAGATCTAATTTGCTGACACTGAC 59.128 40.000 0.00 0.00 32.85 3.51
291 7542 5.640783 CAGATCTAATTTGCTGACACTGACA 59.359 40.000 0.00 0.00 0.00 3.58
292 7543 6.315642 CAGATCTAATTTGCTGACACTGACAT 59.684 38.462 0.00 0.00 0.00 3.06
293 7544 6.538021 AGATCTAATTTGCTGACACTGACATC 59.462 38.462 0.00 0.00 0.00 3.06
294 7545 5.550290 TCTAATTTGCTGACACTGACATCA 58.450 37.500 0.00 0.00 0.00 3.07
310 7563 6.014840 ACTGACATCATTTTCTTGCCAAGAAT 60.015 34.615 19.86 4.14 46.15 2.40
319 7572 9.100554 CATTTTCTTGCCAAGAATATAAATGCA 57.899 29.630 19.86 0.00 46.15 3.96
324 7577 6.788598 TGCCAAGAATATAAATGCAAAGGA 57.211 33.333 0.00 0.00 0.00 3.36
344 7597 9.340695 CAAAGGAATTTCCAAACAAAAGAAAAC 57.659 29.630 17.57 0.00 39.61 2.43
348 7601 9.340695 GGAATTTCCAAACAAAAGAAAACAAAG 57.659 29.630 10.67 0.00 36.28 2.77
355 7608 7.201350 CCAAACAAAAGAAAACAAAGACGAGAG 60.201 37.037 0.00 0.00 0.00 3.20
358 7611 6.148811 ACAAAAGAAAACAAAGACGAGAGACA 59.851 34.615 0.00 0.00 0.00 3.41
387 7643 1.147376 GCCACCACACCACACTACA 59.853 57.895 0.00 0.00 0.00 2.74
394 7650 1.203758 CACACCACACTACATCCGCTA 59.796 52.381 0.00 0.00 0.00 4.26
402 7658 6.183360 ACCACACTACATCCGCTAGAATTAAT 60.183 38.462 0.00 0.00 0.00 1.40
490 7746 4.927425 TGTACCATAAGTCAAGTCGCTTTC 59.073 41.667 0.00 0.00 0.00 2.62
587 7843 2.096218 GCCGCCTCTATTCTTTTATGCG 60.096 50.000 0.00 0.00 40.38 4.73
611 7867 1.480219 GAGCGGCGGAAGATTGTACG 61.480 60.000 9.78 0.00 0.00 3.67
637 7893 6.636562 AGTCGATCGATCAGGTTAATTAGT 57.363 37.500 22.50 0.00 0.00 2.24
655 7911 5.435686 TTAGTAGGTCATGGCATCTTTGT 57.564 39.130 0.00 0.00 0.00 2.83
673 7929 4.314740 TTGTCGCCAATATTTTATGCCC 57.685 40.909 0.00 0.00 0.00 5.36
743 7999 9.389755 ACCACAATTAATTATAAATGGTTTGGC 57.610 29.630 0.00 0.00 34.58 4.52
763 8279 2.223272 GCGCTAGTTGTTTAATCCTGGC 60.223 50.000 0.00 0.00 0.00 4.85
777 8293 1.003580 TCCTGGCAGACCTGATCAAAC 59.996 52.381 17.94 0.00 37.06 2.93
783 8299 1.001974 CAGACCTGATCAAACCACGGA 59.998 52.381 0.00 0.00 0.00 4.69
786 8302 1.026718 CCTGATCAAACCACGGAGCC 61.027 60.000 0.00 0.00 0.00 4.70
799 8315 1.273098 ACGGAGCCTTCTTCCCTAGAA 60.273 52.381 0.00 0.00 40.57 2.10
808 8324 2.011540 CTTCCCTAGAAGCAACGGAC 57.988 55.000 0.00 0.00 42.97 4.79
810 8326 0.895530 TCCCTAGAAGCAACGGACAG 59.104 55.000 0.00 0.00 0.00 3.51
811 8327 0.895530 CCCTAGAAGCAACGGACAGA 59.104 55.000 0.00 0.00 0.00 3.41
812 8328 1.404315 CCCTAGAAGCAACGGACAGAC 60.404 57.143 0.00 0.00 0.00 3.51
814 8330 2.288825 CCTAGAAGCAACGGACAGACAA 60.289 50.000 0.00 0.00 0.00 3.18
815 8331 1.871080 AGAAGCAACGGACAGACAAG 58.129 50.000 0.00 0.00 0.00 3.16
816 8332 1.139058 AGAAGCAACGGACAGACAAGT 59.861 47.619 0.00 0.00 0.00 3.16
817 8333 2.364324 AGAAGCAACGGACAGACAAGTA 59.636 45.455 0.00 0.00 0.00 2.24
818 8334 2.150397 AGCAACGGACAGACAAGTAC 57.850 50.000 0.00 0.00 0.00 2.73
819 8335 1.411246 AGCAACGGACAGACAAGTACA 59.589 47.619 0.00 0.00 0.00 2.90
820 8336 2.159014 AGCAACGGACAGACAAGTACAA 60.159 45.455 0.00 0.00 0.00 2.41
821 8337 2.221055 GCAACGGACAGACAAGTACAAG 59.779 50.000 0.00 0.00 0.00 3.16
822 8338 2.800544 CAACGGACAGACAAGTACAAGG 59.199 50.000 0.00 0.00 0.00 3.61
823 8339 2.037144 ACGGACAGACAAGTACAAGGT 58.963 47.619 0.00 0.00 0.00 3.50
824 8340 2.223971 ACGGACAGACAAGTACAAGGTG 60.224 50.000 0.00 0.00 0.00 4.00
825 8341 2.035449 CGGACAGACAAGTACAAGGTGA 59.965 50.000 0.00 0.00 0.00 4.02
826 8342 3.306088 CGGACAGACAAGTACAAGGTGAT 60.306 47.826 0.00 0.00 0.00 3.06
827 8343 3.997021 GGACAGACAAGTACAAGGTGATG 59.003 47.826 0.00 0.00 0.00 3.07
875 8391 5.561125 CACCTAACAACGCGTAAACAAATAC 59.439 40.000 14.46 0.00 0.00 1.89
876 8392 5.466393 ACCTAACAACGCGTAAACAAATACT 59.534 36.000 14.46 0.00 0.00 2.12
877 8393 6.011277 CCTAACAACGCGTAAACAAATACTC 58.989 40.000 14.46 0.00 0.00 2.59
918 8434 3.011708 AGACTTGCACCCCAGGATTATTT 59.988 43.478 0.00 0.00 0.00 1.40
919 8435 3.769300 GACTTGCACCCCAGGATTATTTT 59.231 43.478 0.00 0.00 0.00 1.82
942 8459 7.739995 TTTCCTGCTGGATGCTATATATACT 57.260 36.000 13.72 0.00 42.81 2.12
985 8506 3.499918 GCACACAAGAAACATAGCACTCT 59.500 43.478 0.00 0.00 0.00 3.24
990 8511 5.121454 CACAAGAAACATAGCACTCTTCTCC 59.879 44.000 0.00 0.00 0.00 3.71
1015 8536 5.327732 AGTCAGACATGGATTCCAAAACAT 58.672 37.500 9.98 0.00 36.95 2.71
1043 8564 0.742635 GGTGCTCTCCTGCTACTTGC 60.743 60.000 0.00 0.00 43.25 4.01
1047 8568 2.887568 CTCCTGCTACTTGCGGCG 60.888 66.667 0.51 0.51 46.34 6.46
1208 8740 7.759489 ATTTCAGCTCTGGTATTGTTTGTTA 57.241 32.000 0.00 0.00 0.00 2.41
1243 8775 7.874016 TGCAAACAAAATGAATTTCAGCTCTAT 59.126 29.630 5.21 0.00 0.00 1.98
1261 8794 5.597182 GCTCTATATCGTGTATATGGGGGAA 59.403 44.000 0.00 0.00 31.67 3.97
1378 8949 5.809001 TCATAGACAAATCAGCAGGAAACT 58.191 37.500 0.00 0.00 46.44 2.66
1487 9060 3.127533 GGGTTCGCAGCGATGCTT 61.128 61.111 24.68 0.00 36.40 3.91
1621 9313 2.288666 GAAGTTGTCACTGTGAAGCCA 58.711 47.619 12.81 3.71 31.60 4.75
1668 9360 2.185608 GAGCTGGGACTTCCTCGC 59.814 66.667 0.00 0.00 36.20 5.03
1780 9478 5.044105 AGGTTTGTAATCCCATCCTTAAGCT 60.044 40.000 0.00 0.00 0.00 3.74
1809 9664 7.656948 TGAATTCAAAACATGAGAAATCCCAAC 59.343 33.333 5.45 0.00 39.77 3.77
1887 9751 2.975410 TCGCAAAGCTTTGATGACAG 57.025 45.000 37.14 20.82 40.55 3.51
1949 9814 1.490490 AGACTGGCCAGAAGTTCAACA 59.510 47.619 39.19 0.00 0.00 3.33
1971 9836 2.450160 CACAAGTTGCAACCGAAAGAC 58.550 47.619 25.62 0.00 0.00 3.01
1976 9841 1.068541 GTTGCAACCGAAAGACCATCC 60.069 52.381 19.15 0.00 0.00 3.51
2093 9958 0.459585 GACTATCGCTGGCACGGAAA 60.460 55.000 9.05 0.00 36.31 3.13
2434 10299 0.598158 TTGACCGTTCTTTCCCGACG 60.598 55.000 0.00 0.00 36.61 5.12
2443 10308 4.178540 GTTCTTTCCCGACGTTGATATCA 58.821 43.478 3.74 0.00 0.00 2.15
2534 10403 9.498307 GTAAACTATTTCCCGTTTTATGACATG 57.502 33.333 0.00 0.00 35.25 3.21
2566 10485 5.978814 AGCGAAGTATCCCATGGAATATAC 58.021 41.667 15.22 16.74 34.34 1.47
2571 10490 7.980099 CGAAGTATCCCATGGAATATACTAACC 59.020 40.741 23.51 17.42 34.34 2.85
2572 10491 7.750947 AGTATCCCATGGAATATACTAACCC 57.249 40.000 22.63 0.00 34.34 4.11
2573 10492 6.677076 AGTATCCCATGGAATATACTAACCCC 59.323 42.308 22.63 0.00 34.34 4.95
2803 10853 5.426185 TCCCTATTCCTTAAAGCTTTCCGTA 59.574 40.000 16.57 0.00 0.00 4.02
2835 10889 5.904362 ATACAAGAGAAATTGCTGGTTCC 57.096 39.130 0.00 0.00 33.28 3.62
2993 11206 5.813717 TCGCTTGATGACATTTGATTGATC 58.186 37.500 0.00 0.00 0.00 2.92
3023 11243 4.266029 GCTGCGATTTATGAAACCATGTTG 59.734 41.667 0.00 0.00 0.00 3.33
3030 11250 9.743937 CGATTTATGAAACCATGTTGAATTTTG 57.256 29.630 0.00 0.00 0.00 2.44
3102 11325 1.534163 GGCAAAACCGTCCTCTGTTAC 59.466 52.381 0.00 0.00 0.00 2.50
3115 11338 2.345991 GTTACGCACCAGCCCAGA 59.654 61.111 0.00 0.00 37.52 3.86
3340 11572 7.029563 AGAATTTGACACACTGTTTGAAACTC 58.970 34.615 9.69 0.00 0.00 3.01
3383 11635 9.620259 ACCTTCTTATCCAAGAACTAATTCATC 57.380 33.333 0.00 0.00 44.13 2.92
3447 11710 2.170273 GCAAGCGTCGTCGGAAAC 59.830 61.111 3.90 0.00 37.56 2.78
3516 11779 3.947834 GCATGTTGTTCCCTAGCATACTT 59.052 43.478 0.00 0.00 0.00 2.24
3684 12050 1.744368 CGTCAGCATCTTGGCAGCT 60.744 57.895 0.00 0.00 39.63 4.24
3812 12178 2.200067 GATCAAGTCTGCCATCGTCAG 58.800 52.381 0.00 0.00 0.00 3.51
4022 12391 0.693049 ACCCAGAAAGAGCCGTTGAT 59.307 50.000 0.00 0.00 0.00 2.57
4453 18367 6.985188 TGTTGCAGATACATCTTAAACTCC 57.015 37.500 11.96 0.00 34.22 3.85
4454 18368 5.580691 TGTTGCAGATACATCTTAAACTCCG 59.419 40.000 11.96 0.00 34.22 4.63
4600 18526 2.230660 GTGAAGGGGTGGTTTCTTCAG 58.769 52.381 5.39 0.00 44.82 3.02
4678 18604 4.655963 ACATGAACTAGACAAAGGCACAT 58.344 39.130 0.00 0.00 0.00 3.21
5009 18948 0.109781 CAACAACATTTCGGCCGGAG 60.110 55.000 27.83 15.03 0.00 4.63
5071 19010 3.050275 GGTGTCAGGCCAAGTCGC 61.050 66.667 5.01 1.14 0.00 5.19
5073 19012 2.031012 TGTCAGGCCAAGTCGCTG 59.969 61.111 5.01 0.00 0.00 5.18
5120 19568 2.423185 GTCATGGTGCGATTGAAATCCA 59.577 45.455 0.00 0.00 31.68 3.41
5125 19573 4.129380 TGGTGCGATTGAAATCCATAGAG 58.871 43.478 0.00 0.00 31.68 2.43
5261 21964 5.119588 GTGCATCTCAATTGTTTCAACATGG 59.880 40.000 5.13 0.00 38.95 3.66
5262 21965 5.221481 TGCATCTCAATTGTTTCAACATGGT 60.221 36.000 5.13 0.00 38.95 3.55
5263 21966 5.697633 GCATCTCAATTGTTTCAACATGGTT 59.302 36.000 5.13 0.00 38.95 3.67
5265 21968 7.546667 GCATCTCAATTGTTTCAACATGGTTAT 59.453 33.333 5.13 0.00 38.95 1.89
5266 21969 9.426837 CATCTCAATTGTTTCAACATGGTTATT 57.573 29.630 5.13 0.00 38.95 1.40
5268 21971 8.637099 TCTCAATTGTTTCAACATGGTTATTGA 58.363 29.630 5.13 12.74 38.12 2.57
5274 21977 9.566530 TTGTTTCAACATGGTTATTGATAATCG 57.433 29.630 0.00 0.00 38.95 3.34
5275 21978 8.951243 TGTTTCAACATGGTTATTGATAATCGA 58.049 29.630 0.00 0.00 34.87 3.59
5279 21982 8.992073 TCAACATGGTTATTGATAATCGATCAG 58.008 33.333 0.00 0.00 45.43 2.90
5280 21983 7.369803 ACATGGTTATTGATAATCGATCAGC 57.630 36.000 0.00 0.00 45.43 4.26
5281 21984 7.164122 ACATGGTTATTGATAATCGATCAGCT 58.836 34.615 0.00 0.00 45.43 4.24
5282 21985 7.118825 ACATGGTTATTGATAATCGATCAGCTG 59.881 37.037 7.63 7.63 45.43 4.24
5283 21986 6.758254 TGGTTATTGATAATCGATCAGCTGA 58.242 36.000 20.79 20.79 45.43 4.26
5285 21988 7.171508 TGGTTATTGATAATCGATCAGCTGAAC 59.828 37.037 22.50 17.72 45.43 3.18
5287 21990 8.715998 GTTATTGATAATCGATCAGCTGAACAT 58.284 33.333 22.50 9.96 45.43 2.71
5288 21991 7.741027 ATTGATAATCGATCAGCTGAACATT 57.259 32.000 22.50 19.30 45.43 2.71
5289 21992 6.535274 TGATAATCGATCAGCTGAACATTG 57.465 37.500 22.50 8.66 39.78 2.82
5290 21993 6.051074 TGATAATCGATCAGCTGAACATTGT 58.949 36.000 22.50 15.92 39.78 2.71
5292 21995 5.633830 AATCGATCAGCTGAACATTGTTT 57.366 34.783 22.50 6.99 0.00 2.83
5294 21997 5.784750 TCGATCAGCTGAACATTGTTTAG 57.215 39.130 22.50 15.05 0.00 1.85
5295 21998 4.631377 TCGATCAGCTGAACATTGTTTAGG 59.369 41.667 22.50 1.99 0.00 2.69
5297 22000 5.220548 CGATCAGCTGAACATTGTTTAGGAG 60.221 44.000 22.50 8.32 0.00 3.69
5298 22001 4.973168 TCAGCTGAACATTGTTTAGGAGT 58.027 39.130 15.67 0.00 0.00 3.85
5299 22002 6.109156 TCAGCTGAACATTGTTTAGGAGTA 57.891 37.500 15.67 0.00 0.00 2.59
5300 22003 6.711277 TCAGCTGAACATTGTTTAGGAGTAT 58.289 36.000 15.67 0.00 0.00 2.12
5302 22005 8.318412 TCAGCTGAACATTGTTTAGGAGTATAA 58.682 33.333 15.67 0.00 0.00 0.98
5304 22007 9.686683 AGCTGAACATTGTTTAGGAGTATAAAT 57.313 29.630 19.36 0.00 0.00 1.40
5333 22036 6.737254 GGAATTTGTCCTTTATGAGTTCGA 57.263 37.500 0.00 0.00 43.98 3.71
5334 22037 6.543736 GGAATTTGTCCTTTATGAGTTCGAC 58.456 40.000 0.00 0.00 43.98 4.20
5337 23613 6.480524 TTTGTCCTTTATGAGTTCGACATG 57.519 37.500 0.00 0.00 30.90 3.21
5339 23615 5.977635 TGTCCTTTATGAGTTCGACATGAT 58.022 37.500 0.00 0.00 0.00 2.45
5370 23646 9.678260 AGTAAGATTTTATTGAGTTGATCTGCT 57.322 29.630 0.00 0.00 0.00 4.24
5373 23649 8.443953 AGATTTTATTGAGTTGATCTGCTACC 57.556 34.615 0.00 0.00 0.00 3.18
5375 23651 8.814038 ATTTTATTGAGTTGATCTGCTACCTT 57.186 30.769 0.00 0.00 0.00 3.50
5376 23652 7.849804 TTTATTGAGTTGATCTGCTACCTTC 57.150 36.000 0.00 0.00 0.00 3.46
5377 23653 4.890158 TTGAGTTGATCTGCTACCTTCA 57.110 40.909 0.00 0.00 0.00 3.02
5379 23655 3.578282 TGAGTTGATCTGCTACCTTCACA 59.422 43.478 0.00 0.00 0.00 3.58
5380 23656 4.040339 TGAGTTGATCTGCTACCTTCACAA 59.960 41.667 0.00 0.00 0.00 3.33
5381 23657 4.319177 AGTTGATCTGCTACCTTCACAAC 58.681 43.478 0.00 0.00 37.30 3.32
5382 23658 4.040952 AGTTGATCTGCTACCTTCACAACT 59.959 41.667 0.00 0.00 40.74 3.16
5385 23661 4.756642 TGATCTGCTACCTTCACAACTTTG 59.243 41.667 0.00 0.00 0.00 2.77
5386 23662 2.878406 TCTGCTACCTTCACAACTTTGC 59.122 45.455 0.00 0.00 0.00 3.68
5387 23663 2.618241 CTGCTACCTTCACAACTTTGCA 59.382 45.455 0.00 0.00 0.00 4.08
5388 23664 2.357637 TGCTACCTTCACAACTTTGCAC 59.642 45.455 0.00 0.00 0.00 4.57
5389 23665 2.618709 GCTACCTTCACAACTTTGCACT 59.381 45.455 0.00 0.00 0.00 4.40
5391 23667 4.319549 GCTACCTTCACAACTTTGCACTAC 60.320 45.833 0.00 0.00 0.00 2.73
5392 23668 3.886123 ACCTTCACAACTTTGCACTACT 58.114 40.909 0.00 0.00 0.00 2.57
5393 23669 4.270008 ACCTTCACAACTTTGCACTACTT 58.730 39.130 0.00 0.00 0.00 2.24
5394 23670 4.705023 ACCTTCACAACTTTGCACTACTTT 59.295 37.500 0.00 0.00 0.00 2.66
5395 23671 5.163652 ACCTTCACAACTTTGCACTACTTTC 60.164 40.000 0.00 0.00 0.00 2.62
5396 23672 5.066505 CCTTCACAACTTTGCACTACTTTCT 59.933 40.000 0.00 0.00 0.00 2.52
5397 23673 6.404734 CCTTCACAACTTTGCACTACTTTCTT 60.405 38.462 0.00 0.00 0.00 2.52
5398 23674 7.201696 CCTTCACAACTTTGCACTACTTTCTTA 60.202 37.037 0.00 0.00 0.00 2.10
5399 23675 7.618502 TCACAACTTTGCACTACTTTCTTAA 57.381 32.000 0.00 0.00 0.00 1.85
5400 23676 8.220755 TCACAACTTTGCACTACTTTCTTAAT 57.779 30.769 0.00 0.00 0.00 1.40
5401 23677 8.682710 TCACAACTTTGCACTACTTTCTTAATT 58.317 29.630 0.00 0.00 0.00 1.40
5402 23678 8.745837 CACAACTTTGCACTACTTTCTTAATTG 58.254 33.333 0.00 0.00 0.00 2.32
5403 23679 7.435192 ACAACTTTGCACTACTTTCTTAATTGC 59.565 33.333 0.00 0.00 0.00 3.56
5405 23681 7.141363 ACTTTGCACTACTTTCTTAATTGCTG 58.859 34.615 0.00 0.00 0.00 4.41
5407 23683 6.633500 TGCACTACTTTCTTAATTGCTGTT 57.367 33.333 0.00 0.00 0.00 3.16
5408 23684 7.737972 TGCACTACTTTCTTAATTGCTGTTA 57.262 32.000 0.00 0.00 0.00 2.41
5414 23690 9.979270 CTACTTTCTTAATTGCTGTTATGTCAG 57.021 33.333 0.00 0.00 38.35 3.51
5428 23704 7.628769 TGTTATGTCAGCATTGTTATGTCAT 57.371 32.000 0.00 0.00 36.58 3.06
5429 23705 7.696755 TGTTATGTCAGCATTGTTATGTCATC 58.303 34.615 0.00 0.00 36.58 2.92
5430 23706 5.762825 ATGTCAGCATTGTTATGTCATCC 57.237 39.130 0.00 0.00 34.12 3.51
5431 23707 4.587891 TGTCAGCATTGTTATGTCATCCA 58.412 39.130 0.00 0.00 34.12 3.41
5432 23708 5.008980 TGTCAGCATTGTTATGTCATCCAA 58.991 37.500 0.00 0.00 34.12 3.53
5433 23709 5.476254 TGTCAGCATTGTTATGTCATCCAAA 59.524 36.000 0.00 0.00 34.12 3.28
5434 23710 6.015603 TGTCAGCATTGTTATGTCATCCAAAA 60.016 34.615 0.00 0.00 34.12 2.44
5435 23711 6.867816 GTCAGCATTGTTATGTCATCCAAAAA 59.132 34.615 0.00 0.00 34.12 1.94
5438 23714 8.028354 CAGCATTGTTATGTCATCCAAAAAGTA 58.972 33.333 0.00 0.00 34.12 2.24
5439 23715 8.752187 AGCATTGTTATGTCATCCAAAAAGTAT 58.248 29.630 0.00 0.00 34.12 2.12
5448 23724 8.662781 TGTCATCCAAAAAGTATACATCTAGC 57.337 34.615 5.50 0.00 0.00 3.42
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.418819 CCGCAATCCAATAAATTCATCTGTTC 59.581 38.462 0.00 0.00 0.00 3.18
1 2 6.096705 TCCGCAATCCAATAAATTCATCTGTT 59.903 34.615 0.00 0.00 0.00 3.16
2 3 5.593909 TCCGCAATCCAATAAATTCATCTGT 59.406 36.000 0.00 0.00 0.00 3.41
3 4 6.075762 TCCGCAATCCAATAAATTCATCTG 57.924 37.500 0.00 0.00 0.00 2.90
4 5 6.239120 CCTTCCGCAATCCAATAAATTCATCT 60.239 38.462 0.00 0.00 0.00 2.90
5 6 5.922544 CCTTCCGCAATCCAATAAATTCATC 59.077 40.000 0.00 0.00 0.00 2.92
6 7 5.221501 CCCTTCCGCAATCCAATAAATTCAT 60.222 40.000 0.00 0.00 0.00 2.57
7 8 4.099266 CCCTTCCGCAATCCAATAAATTCA 59.901 41.667 0.00 0.00 0.00 2.57
8 9 4.099419 ACCCTTCCGCAATCCAATAAATTC 59.901 41.667 0.00 0.00 0.00 2.17
9 10 4.030216 ACCCTTCCGCAATCCAATAAATT 58.970 39.130 0.00 0.00 0.00 1.82
10 11 3.384467 CACCCTTCCGCAATCCAATAAAT 59.616 43.478 0.00 0.00 0.00 1.40
11 12 2.757868 CACCCTTCCGCAATCCAATAAA 59.242 45.455 0.00 0.00 0.00 1.40
12 13 2.374184 CACCCTTCCGCAATCCAATAA 58.626 47.619 0.00 0.00 0.00 1.40
13 14 2.021723 GCACCCTTCCGCAATCCAATA 61.022 52.381 0.00 0.00 0.00 1.90
15 16 1.976474 GCACCCTTCCGCAATCCAA 60.976 57.895 0.00 0.00 0.00 3.53
17 18 0.179018 ATAGCACCCTTCCGCAATCC 60.179 55.000 0.00 0.00 0.00 3.01
18 19 1.230324 GATAGCACCCTTCCGCAATC 58.770 55.000 0.00 0.00 0.00 2.67
19 20 0.546122 TGATAGCACCCTTCCGCAAT 59.454 50.000 0.00 0.00 0.00 3.56
20 21 0.326595 TTGATAGCACCCTTCCGCAA 59.673 50.000 0.00 0.00 0.00 4.85
21 22 0.546122 ATTGATAGCACCCTTCCGCA 59.454 50.000 0.00 0.00 0.00 5.69
22 23 0.947244 CATTGATAGCACCCTTCCGC 59.053 55.000 0.00 0.00 0.00 5.54
23 24 2.620251 TCATTGATAGCACCCTTCCG 57.380 50.000 0.00 0.00 0.00 4.30
24 25 5.859205 AAAATCATTGATAGCACCCTTCC 57.141 39.130 0.00 0.00 0.00 3.46
50 51 9.906660 TTGATAAAAACAATCGTGAAAAGCTAT 57.093 25.926 0.00 0.00 0.00 2.97
53 54 8.487176 ACATTGATAAAAACAATCGTGAAAAGC 58.513 29.630 0.00 0.00 36.07 3.51
57 58 9.566530 CCATACATTGATAAAAACAATCGTGAA 57.433 29.630 0.00 0.00 36.07 3.18
58 59 8.951243 TCCATACATTGATAAAAACAATCGTGA 58.049 29.630 0.00 0.00 36.07 4.35
59 60 9.566530 TTCCATACATTGATAAAAACAATCGTG 57.433 29.630 0.00 0.00 36.07 4.35
73 74 9.874205 GAGGAAAATTTTGATTCCATACATTGA 57.126 29.630 8.47 0.00 46.14 2.57
74 75 9.101655 GGAGGAAAATTTTGATTCCATACATTG 57.898 33.333 8.47 0.00 46.14 2.82
75 76 8.824783 TGGAGGAAAATTTTGATTCCATACATT 58.175 29.630 8.47 0.00 46.14 2.71
77 78 7.789202 TGGAGGAAAATTTTGATTCCATACA 57.211 32.000 8.47 0.00 46.14 2.29
78 79 9.101655 CATTGGAGGAAAATTTTGATTCCATAC 57.898 33.333 20.02 3.49 46.14 2.39
79 80 8.824783 ACATTGGAGGAAAATTTTGATTCCATA 58.175 29.630 20.02 14.31 46.14 2.74
80 81 7.692172 ACATTGGAGGAAAATTTTGATTCCAT 58.308 30.769 20.02 12.14 46.14 3.41
82 83 7.389232 AGACATTGGAGGAAAATTTTGATTCC 58.611 34.615 8.47 12.03 44.45 3.01
83 84 8.837788 AAGACATTGGAGGAAAATTTTGATTC 57.162 30.769 8.47 3.09 0.00 2.52
84 85 7.599998 CGAAGACATTGGAGGAAAATTTTGATT 59.400 33.333 8.47 0.00 0.00 2.57
85 86 7.092716 CGAAGACATTGGAGGAAAATTTTGAT 58.907 34.615 8.47 0.00 0.00 2.57
86 87 6.446318 CGAAGACATTGGAGGAAAATTTTGA 58.554 36.000 8.47 0.00 0.00 2.69
87 88 5.119125 GCGAAGACATTGGAGGAAAATTTTG 59.881 40.000 8.47 0.00 0.00 2.44
88 89 5.011023 AGCGAAGACATTGGAGGAAAATTTT 59.989 36.000 2.28 2.28 0.00 1.82
89 90 4.524328 AGCGAAGACATTGGAGGAAAATTT 59.476 37.500 0.00 0.00 0.00 1.82
91 92 3.441572 CAGCGAAGACATTGGAGGAAAAT 59.558 43.478 0.00 0.00 0.00 1.82
92 93 2.813754 CAGCGAAGACATTGGAGGAAAA 59.186 45.455 0.00 0.00 0.00 2.29
93 94 2.426522 CAGCGAAGACATTGGAGGAAA 58.573 47.619 0.00 0.00 0.00 3.13
94 95 1.339055 CCAGCGAAGACATTGGAGGAA 60.339 52.381 0.00 0.00 32.34 3.36
95 96 0.250234 CCAGCGAAGACATTGGAGGA 59.750 55.000 0.00 0.00 32.34 3.71
96 97 0.745845 CCCAGCGAAGACATTGGAGG 60.746 60.000 0.00 0.00 32.34 4.30
100 101 2.409870 GGGCCCAGCGAAGACATTG 61.410 63.158 19.95 0.00 0.00 2.82
101 102 2.044946 GGGCCCAGCGAAGACATT 60.045 61.111 19.95 0.00 0.00 2.71
102 103 2.215451 AATGGGCCCAGCGAAGACAT 62.215 55.000 31.97 6.79 0.00 3.06
103 104 2.819984 GAATGGGCCCAGCGAAGACA 62.820 60.000 31.97 2.06 0.00 3.41
104 105 2.044946 AATGGGCCCAGCGAAGAC 60.045 61.111 31.97 0.00 0.00 3.01
105 106 1.925285 ATGAATGGGCCCAGCGAAGA 61.925 55.000 31.97 10.85 0.00 2.87
106 107 1.039233 AATGAATGGGCCCAGCGAAG 61.039 55.000 31.97 0.00 0.00 3.79
107 108 0.614415 AAATGAATGGGCCCAGCGAA 60.614 50.000 31.97 16.06 0.00 4.70
108 109 1.000233 AAATGAATGGGCCCAGCGA 60.000 52.632 31.97 16.33 0.00 4.93
109 110 1.142314 CAAATGAATGGGCCCAGCG 59.858 57.895 31.97 8.96 0.00 5.18
110 111 0.462789 CTCAAATGAATGGGCCCAGC 59.537 55.000 31.97 24.32 0.00 4.85
113 114 1.134946 CGAACTCAAATGAATGGGCCC 59.865 52.381 17.59 17.59 0.00 5.80
114 115 1.469767 GCGAACTCAAATGAATGGGCC 60.470 52.381 0.00 0.00 0.00 5.80
115 116 1.469767 GGCGAACTCAAATGAATGGGC 60.470 52.381 0.00 0.00 0.00 5.36
116 117 1.134946 GGGCGAACTCAAATGAATGGG 59.865 52.381 0.00 0.00 0.00 4.00
117 118 2.094675 AGGGCGAACTCAAATGAATGG 58.905 47.619 0.00 0.00 0.00 3.16
119 120 2.094675 CCAGGGCGAACTCAAATGAAT 58.905 47.619 0.00 0.00 0.00 2.57
120 121 1.073125 TCCAGGGCGAACTCAAATGAA 59.927 47.619 0.00 0.00 0.00 2.57
122 123 1.089920 CTCCAGGGCGAACTCAAATG 58.910 55.000 0.00 0.00 0.00 2.32
125 126 2.347490 GCTCCAGGGCGAACTCAA 59.653 61.111 0.00 0.00 0.00 3.02
126 127 3.706373 GGCTCCAGGGCGAACTCA 61.706 66.667 0.00 0.00 0.00 3.41
129 130 1.614241 TAAGAGGCTCCAGGGCGAAC 61.614 60.000 11.71 0.00 45.89 3.95
130 131 0.907704 TTAAGAGGCTCCAGGGCGAA 60.908 55.000 11.71 0.00 45.89 4.70
131 132 0.907704 TTTAAGAGGCTCCAGGGCGA 60.908 55.000 11.71 0.00 45.89 5.54
132 133 0.744771 GTTTAAGAGGCTCCAGGGCG 60.745 60.000 11.71 0.00 45.89 6.13
133 134 0.621082 AGTTTAAGAGGCTCCAGGGC 59.379 55.000 11.71 0.00 41.20 5.19
135 136 2.700722 GGAGTTTAAGAGGCTCCAGG 57.299 55.000 11.71 0.00 45.93 4.45
138 139 2.093394 GTCCTGGAGTTTAAGAGGCTCC 60.093 54.545 11.71 0.00 46.61 4.70
139 140 2.093394 GGTCCTGGAGTTTAAGAGGCTC 60.093 54.545 6.34 6.34 0.00 4.70
141 142 1.405661 CGGTCCTGGAGTTTAAGAGGC 60.406 57.143 0.00 0.00 0.00 4.70
142 143 1.207329 CCGGTCCTGGAGTTTAAGAGG 59.793 57.143 0.00 0.00 0.00 3.69
143 144 1.900486 ACCGGTCCTGGAGTTTAAGAG 59.100 52.381 0.00 0.00 0.00 2.85
144 145 1.621814 CACCGGTCCTGGAGTTTAAGA 59.378 52.381 2.59 0.00 0.00 2.10
145 146 1.944430 GCACCGGTCCTGGAGTTTAAG 60.944 57.143 2.59 0.00 0.00 1.85
147 148 0.834687 AGCACCGGTCCTGGAGTTTA 60.835 55.000 2.59 0.00 0.00 2.01
149 150 2.526873 AGCACCGGTCCTGGAGTT 60.527 61.111 2.59 0.00 0.00 3.01
151 152 4.767255 GCAGCACCGGTCCTGGAG 62.767 72.222 26.63 5.24 0.00 3.86
153 154 4.335647 AAGCAGCACCGGTCCTGG 62.336 66.667 26.63 8.99 0.00 4.45
162 163 4.400961 AGAGGCCGGAAGCAGCAC 62.401 66.667 5.05 0.00 46.50 4.40
163 164 4.399395 CAGAGGCCGGAAGCAGCA 62.399 66.667 5.05 0.00 46.50 4.41
168 169 2.016393 TATGACGCAGAGGCCGGAAG 62.016 60.000 5.05 0.00 36.38 3.46
169 170 2.055633 TATGACGCAGAGGCCGGAA 61.056 57.895 5.05 0.00 36.38 4.30
170 171 2.441348 TATGACGCAGAGGCCGGA 60.441 61.111 5.05 0.00 36.38 5.14
172 173 2.279517 GGTATGACGCAGAGGCCG 60.280 66.667 0.00 0.00 36.38 6.13
204 7455 1.201965 GCGATTCGAGGAAAACAGCTG 60.202 52.381 13.48 13.48 0.00 4.24
217 7468 1.226974 AGGTCACGATGGCGATTCG 60.227 57.895 0.62 0.62 41.64 3.34
246 7497 3.447229 TGAAGATCCTACATGCAAGTCGA 59.553 43.478 0.00 0.00 0.00 4.20
247 7498 3.785486 TGAAGATCCTACATGCAAGTCG 58.215 45.455 0.00 0.00 0.00 4.18
249 7500 5.609423 GATCTGAAGATCCTACATGCAAGT 58.391 41.667 8.84 0.00 43.85 3.16
262 7513 7.280428 CAGTGTCAGCAAATTAGATCTGAAGAT 59.720 37.037 5.18 0.00 37.33 2.40
271 7522 5.550290 TGATGTCAGTGTCAGCAAATTAGA 58.450 37.500 5.84 0.00 0.00 2.10
285 7536 4.828939 TCTTGGCAAGAAAATGATGTCAGT 59.171 37.500 26.78 0.00 33.83 3.41
286 7537 5.381174 TCTTGGCAAGAAAATGATGTCAG 57.619 39.130 26.78 0.00 33.83 3.51
287 7538 5.787953 TTCTTGGCAAGAAAATGATGTCA 57.212 34.783 33.97 12.73 44.10 3.58
310 7563 9.784531 TTGTTTGGAAATTCCTTTGCATTTATA 57.215 25.926 13.78 0.00 41.55 0.98
316 7569 6.176183 TCTTTTGTTTGGAAATTCCTTTGCA 58.824 32.000 13.78 4.58 40.44 4.08
319 7572 9.072375 TGTTTTCTTTTGTTTGGAAATTCCTTT 57.928 25.926 13.78 0.00 37.46 3.11
324 7577 9.891828 GTCTTTGTTTTCTTTTGTTTGGAAATT 57.108 25.926 0.00 0.00 0.00 1.82
344 7597 2.323959 GTGAGCTGTCTCTCGTCTTTG 58.676 52.381 0.00 0.00 40.03 2.77
348 7601 4.755546 CGTGAGCTGTCTCTCGTC 57.244 61.111 0.00 0.00 45.77 4.20
355 7608 3.695606 TGGCCTCCGTGAGCTGTC 61.696 66.667 3.32 0.00 0.00 3.51
387 7643 9.561069 AGTAACAATCAATTAATTCTAGCGGAT 57.439 29.630 0.00 0.00 0.00 4.18
470 7726 3.335579 GGAAAGCGACTTGACTTATGGT 58.664 45.455 0.00 0.00 0.00 3.55
471 7727 2.678336 GGGAAAGCGACTTGACTTATGG 59.322 50.000 0.00 0.00 0.00 2.74
490 7746 1.879430 CGTAATACACACGGCCGGG 60.879 63.158 29.60 29.60 35.78 5.73
611 7867 6.830114 AATTAACCTGATCGATCGACTTTC 57.170 37.500 22.06 14.95 0.00 2.62
637 7893 2.905075 CGACAAAGATGCCATGACCTA 58.095 47.619 0.00 0.00 0.00 3.08
655 7911 3.243234 CGTTGGGCATAAAATATTGGCGA 60.243 43.478 0.00 0.00 39.16 5.54
660 7916 3.004315 CGGCTCGTTGGGCATAAAATATT 59.996 43.478 0.00 0.00 0.00 1.28
661 7917 2.552315 CGGCTCGTTGGGCATAAAATAT 59.448 45.455 0.00 0.00 0.00 1.28
673 7929 2.255252 CTTTTGGGCGGCTCGTTG 59.745 61.111 9.56 0.00 0.00 4.10
685 7941 8.183830 TGTAATGACTTTCAAACAAGCTTTTG 57.816 30.769 0.00 0.00 37.75 2.44
733 7989 1.616159 ACAACTAGCGCCAAACCATT 58.384 45.000 2.29 0.00 0.00 3.16
735 7991 1.394618 AAACAACTAGCGCCAAACCA 58.605 45.000 2.29 0.00 0.00 3.67
743 7999 3.006940 TGCCAGGATTAAACAACTAGCG 58.993 45.455 0.00 0.00 0.00 4.26
763 8279 1.001974 TCCGTGGTTTGATCAGGTCTG 59.998 52.381 0.00 0.00 0.00 3.51
777 8293 0.976073 TAGGGAAGAAGGCTCCGTGG 60.976 60.000 0.00 0.00 0.00 4.94
799 8315 1.411246 TGTACTTGTCTGTCCGTTGCT 59.589 47.619 0.00 0.00 0.00 3.91
800 8316 1.860676 TGTACTTGTCTGTCCGTTGC 58.139 50.000 0.00 0.00 0.00 4.17
801 8317 2.800544 CCTTGTACTTGTCTGTCCGTTG 59.199 50.000 0.00 0.00 0.00 4.10
803 8319 2.037144 ACCTTGTACTTGTCTGTCCGT 58.963 47.619 0.00 0.00 0.00 4.69
804 8320 2.035449 TCACCTTGTACTTGTCTGTCCG 59.965 50.000 0.00 0.00 0.00 4.79
807 8323 4.689612 ACATCACCTTGTACTTGTCTGT 57.310 40.909 0.00 0.00 0.00 3.41
808 8324 5.784177 ACTACATCACCTTGTACTTGTCTG 58.216 41.667 0.00 0.00 0.00 3.51
810 8326 6.026947 AGACTACATCACCTTGTACTTGTC 57.973 41.667 0.00 0.00 30.65 3.18
811 8327 6.420913 AAGACTACATCACCTTGTACTTGT 57.579 37.500 0.00 0.00 0.00 3.16
812 8328 7.155328 AGAAAGACTACATCACCTTGTACTTG 58.845 38.462 0.00 0.00 0.00 3.16
814 8330 6.919775 AGAAAGACTACATCACCTTGTACT 57.080 37.500 0.00 0.00 0.00 2.73
815 8331 7.873505 AGAAAGAAAGACTACATCACCTTGTAC 59.126 37.037 0.00 0.00 0.00 2.90
816 8332 7.963532 AGAAAGAAAGACTACATCACCTTGTA 58.036 34.615 0.00 0.00 0.00 2.41
817 8333 6.831976 AGAAAGAAAGACTACATCACCTTGT 58.168 36.000 0.00 0.00 0.00 3.16
818 8334 6.931281 TGAGAAAGAAAGACTACATCACCTTG 59.069 38.462 0.00 0.00 0.00 3.61
819 8335 6.931840 GTGAGAAAGAAAGACTACATCACCTT 59.068 38.462 0.00 0.00 30.77 3.50
820 8336 6.459923 GTGAGAAAGAAAGACTACATCACCT 58.540 40.000 0.00 0.00 30.77 4.00
821 8337 5.346281 CGTGAGAAAGAAAGACTACATCACC 59.654 44.000 0.00 0.00 32.82 4.02
822 8338 5.921408 ACGTGAGAAAGAAAGACTACATCAC 59.079 40.000 0.00 0.00 33.05 3.06
823 8339 5.920840 CACGTGAGAAAGAAAGACTACATCA 59.079 40.000 10.90 0.00 0.00 3.07
824 8340 5.921408 ACACGTGAGAAAGAAAGACTACATC 59.079 40.000 25.01 0.00 0.00 3.06
825 8341 5.692204 CACACGTGAGAAAGAAAGACTACAT 59.308 40.000 25.01 0.00 0.00 2.29
826 8342 5.041287 CACACGTGAGAAAGAAAGACTACA 58.959 41.667 25.01 0.00 0.00 2.74
827 8343 4.085004 GCACACGTGAGAAAGAAAGACTAC 60.085 45.833 25.01 0.00 0.00 2.73
875 8391 1.264288 GCAAGAACACCTCAAACCGAG 59.736 52.381 0.00 0.00 41.89 4.63
876 8392 1.305201 GCAAGAACACCTCAAACCGA 58.695 50.000 0.00 0.00 0.00 4.69
877 8393 1.002468 CTGCAAGAACACCTCAAACCG 60.002 52.381 0.00 0.00 34.07 4.44
942 8459 1.337703 TCCCTCGTTTCTCGTTTCGAA 59.662 47.619 0.00 0.00 40.80 3.71
990 8511 5.009911 TGTTTTGGAATCCATGTCTGACTTG 59.990 40.000 14.76 14.76 31.53 3.16
1015 8536 1.219124 GGAGAGCACCGCAGAATGA 59.781 57.895 0.00 0.00 39.69 2.57
1243 8775 6.743208 GCTTCTTTTCCCCCATATACACGATA 60.743 42.308 0.00 0.00 0.00 2.92
1261 8794 2.359900 GACGGGTCATCATGCTTCTTT 58.640 47.619 0.00 0.00 0.00 2.52
1378 8949 1.575922 GTGAGCGCAAATCACTGCA 59.424 52.632 18.10 0.00 43.03 4.41
1381 8952 1.609208 AAAGGTGAGCGCAAATCACT 58.391 45.000 22.67 10.09 45.18 3.41
1576 9265 5.924825 GGGAAATTCTGCATTGAGAATATGC 59.075 40.000 10.01 0.00 46.63 3.14
1590 9282 3.815401 AGTGACAACTTCGGGAAATTCTG 59.185 43.478 0.00 0.00 30.14 3.02
1621 9313 6.219473 TGTGTGTGTTTCATGAAAAGTGTTT 58.781 32.000 22.07 0.00 31.33 2.83
1809 9664 3.942829 TGGAGTTAACTGATTCCTGCTG 58.057 45.455 14.14 0.00 0.00 4.41
1887 9751 2.513897 GCACAGGACCATACCCGC 60.514 66.667 0.00 0.00 0.00 6.13
1949 9814 1.134175 CTTTCGGTTGCAACTTGTGGT 59.866 47.619 27.64 0.00 0.00 4.16
2093 9958 1.219124 CGTAGCTCACACCCTGCAT 59.781 57.895 0.00 0.00 0.00 3.96
2159 10024 1.470285 GCACGCCTTGTAGATACCGAA 60.470 52.381 0.00 0.00 0.00 4.30
2274 10139 0.842030 TGGGAGCTCATGACCAACCT 60.842 55.000 17.19 0.00 0.00 3.50
2434 10299 6.721571 TTCTTTGTTCCGAGTGATATCAAC 57.278 37.500 7.07 1.39 0.00 3.18
2443 10308 3.694566 ACAAGCTTTTCTTTGTTCCGAGT 59.305 39.130 0.00 0.00 31.27 4.18
2534 10403 4.448210 TGGGATACTTCGCTATTTTGGAC 58.552 43.478 0.00 0.00 35.88 4.02
2778 10828 5.104067 ACGGAAAGCTTTAAGGAATAGGGAT 60.104 40.000 12.68 0.00 0.00 3.85
2803 10853 8.153550 AGCAATTTCTCTTGTATATCGAGGATT 58.846 33.333 0.00 0.00 0.00 3.01
2993 11206 5.171337 GGTTTCATAAATCGCAGCATTTACG 59.829 40.000 10.41 5.23 32.30 3.18
3023 11243 6.617105 GCAGCTGCACATAAGTTTCAAAATTC 60.617 38.462 33.36 0.00 41.59 2.17
3030 11250 1.464608 TCGCAGCTGCACATAAGTTTC 59.535 47.619 36.03 4.51 42.21 2.78
3129 11352 4.748144 GGGAGTGCTTGCCTGGGG 62.748 72.222 0.00 0.00 33.76 4.96
3340 11572 5.745227 AGAAGGTACATATGTTCACCCTTG 58.255 41.667 22.82 0.00 29.05 3.61
3383 11635 5.352569 GGATTCCTAAACACATGACACAGAG 59.647 44.000 0.00 0.00 0.00 3.35
3684 12050 1.287815 CACGTAGGAGTTGCGGTCA 59.712 57.895 0.00 0.00 39.39 4.02
3812 12178 3.889196 TTTCAATGTTCGTACCTGTGC 57.111 42.857 0.00 0.00 0.00 4.57
3898 12267 2.749076 GTCACAGATGCTGCAACCAATA 59.251 45.455 6.36 0.00 34.37 1.90
4022 12391 0.320073 CGTCGTAAACCAAGCCAGGA 60.320 55.000 0.00 0.00 0.00 3.86
4925 18864 6.542852 GCTAAAGATCGTGATAGCACAAAAA 58.457 36.000 12.28 0.00 45.41 1.94
5035 18974 0.027194 CTCTTTGCATCGTCGCATGG 59.973 55.000 2.49 0.30 42.62 3.66
5036 18975 0.027194 CCTCTTTGCATCGTCGCATG 59.973 55.000 2.49 0.00 42.62 4.06
5037 18976 0.391661 ACCTCTTTGCATCGTCGCAT 60.392 50.000 2.49 0.00 42.62 4.73
5038 18977 1.005037 ACCTCTTTGCATCGTCGCA 60.005 52.632 0.00 0.00 41.03 5.10
5039 18978 1.291877 ACACCTCTTTGCATCGTCGC 61.292 55.000 0.00 0.00 0.00 5.19
5148 19596 7.257722 CAAATCGCCTACAAAATATGTTTCCT 58.742 34.615 0.00 0.00 43.63 3.36
5227 21930 9.507280 AAACAATTGAGATGCACTATTAATTCG 57.493 29.630 13.59 0.00 0.00 3.34
5261 21964 8.076714 TGTTCAGCTGATCGATTATCAATAAC 57.923 34.615 19.04 7.83 44.05 1.89
5262 21965 8.837788 ATGTTCAGCTGATCGATTATCAATAA 57.162 30.769 19.04 0.00 44.05 1.40
5263 21966 8.715088 CAATGTTCAGCTGATCGATTATCAATA 58.285 33.333 19.04 0.00 44.05 1.90
5265 21968 6.539826 ACAATGTTCAGCTGATCGATTATCAA 59.460 34.615 19.04 0.00 44.05 2.57
5266 21969 6.051074 ACAATGTTCAGCTGATCGATTATCA 58.949 36.000 19.04 7.40 42.48 2.15
5268 21971 6.932356 AACAATGTTCAGCTGATCGATTAT 57.068 33.333 19.04 6.15 0.00 1.28
5272 21975 4.631377 CCTAAACAATGTTCAGCTGATCGA 59.369 41.667 19.04 8.16 0.00 3.59
5273 21976 4.631377 TCCTAAACAATGTTCAGCTGATCG 59.369 41.667 19.04 6.91 0.00 3.69
5274 21977 5.645497 ACTCCTAAACAATGTTCAGCTGATC 59.355 40.000 19.04 17.54 0.00 2.92
5275 21978 5.564550 ACTCCTAAACAATGTTCAGCTGAT 58.435 37.500 19.04 0.00 0.00 2.90
5277 21980 6.992063 ATACTCCTAAACAATGTTCAGCTG 57.008 37.500 7.63 7.63 0.00 4.24
5310 22013 6.148811 TGTCGAACTCATAAAGGACAAATTCC 59.851 38.462 0.00 0.00 46.33 3.01
5312 22015 7.390440 TCATGTCGAACTCATAAAGGACAAATT 59.610 33.333 0.00 0.00 37.86 1.82
5313 22016 6.878923 TCATGTCGAACTCATAAAGGACAAAT 59.121 34.615 0.00 0.00 37.86 2.32
5314 22017 6.227522 TCATGTCGAACTCATAAAGGACAAA 58.772 36.000 0.00 0.00 37.86 2.83
5315 22018 5.789521 TCATGTCGAACTCATAAAGGACAA 58.210 37.500 0.00 0.00 37.86 3.18
5344 23620 9.678260 AGCAGATCAACTCAATAAAATCTTACT 57.322 29.630 0.00 0.00 0.00 2.24
5347 23623 8.897752 GGTAGCAGATCAACTCAATAAAATCTT 58.102 33.333 0.00 0.00 0.00 2.40
5349 23625 8.443953 AGGTAGCAGATCAACTCAATAAAATC 57.556 34.615 0.00 0.00 0.00 2.17
5353 23629 6.818644 GTGAAGGTAGCAGATCAACTCAATAA 59.181 38.462 0.00 0.00 0.00 1.40
5355 23631 5.181748 GTGAAGGTAGCAGATCAACTCAAT 58.818 41.667 0.00 0.00 0.00 2.57
5361 23637 4.623932 AGTTGTGAAGGTAGCAGATCAA 57.376 40.909 0.00 0.00 0.00 2.57
5362 23638 4.623932 AAGTTGTGAAGGTAGCAGATCA 57.376 40.909 0.00 0.00 0.00 2.92
5363 23639 4.378874 GCAAAGTTGTGAAGGTAGCAGATC 60.379 45.833 0.00 0.00 0.00 2.75
5366 23642 2.618241 TGCAAAGTTGTGAAGGTAGCAG 59.382 45.455 0.00 0.00 0.00 4.24
5369 23645 5.057149 AGTAGTGCAAAGTTGTGAAGGTAG 58.943 41.667 0.00 0.00 0.00 3.18
5370 23646 5.031066 AGTAGTGCAAAGTTGTGAAGGTA 57.969 39.130 0.00 0.00 0.00 3.08
5371 23647 3.886123 AGTAGTGCAAAGTTGTGAAGGT 58.114 40.909 0.00 0.00 0.00 3.50
5373 23649 6.124088 AGAAAGTAGTGCAAAGTTGTGAAG 57.876 37.500 0.00 0.00 0.00 3.02
5375 23651 7.618502 TTAAGAAAGTAGTGCAAAGTTGTGA 57.381 32.000 0.00 0.00 0.00 3.58
5376 23652 8.745837 CAATTAAGAAAGTAGTGCAAAGTTGTG 58.254 33.333 0.00 0.00 0.00 3.33
5377 23653 7.435192 GCAATTAAGAAAGTAGTGCAAAGTTGT 59.565 33.333 0.00 0.00 0.00 3.32
5379 23655 7.649306 CAGCAATTAAGAAAGTAGTGCAAAGTT 59.351 33.333 0.00 0.00 32.98 2.66
5380 23656 7.141363 CAGCAATTAAGAAAGTAGTGCAAAGT 58.859 34.615 0.00 0.00 32.98 2.66
5381 23657 7.141363 ACAGCAATTAAGAAAGTAGTGCAAAG 58.859 34.615 0.00 0.00 32.98 2.77
5382 23658 7.038154 ACAGCAATTAAGAAAGTAGTGCAAA 57.962 32.000 0.00 0.00 32.98 3.68
5385 23661 8.237267 ACATAACAGCAATTAAGAAAGTAGTGC 58.763 33.333 0.00 0.00 0.00 4.40
5386 23662 9.760660 GACATAACAGCAATTAAGAAAGTAGTG 57.239 33.333 0.00 0.00 0.00 2.74
5387 23663 9.502091 TGACATAACAGCAATTAAGAAAGTAGT 57.498 29.630 0.00 0.00 0.00 2.73
5388 23664 9.979270 CTGACATAACAGCAATTAAGAAAGTAG 57.021 33.333 0.00 0.00 0.00 2.57
5403 23679 7.075674 TGACATAACAATGCTGACATAACAG 57.924 36.000 0.00 0.00 40.43 3.16
5405 23681 7.134815 GGATGACATAACAATGCTGACATAAC 58.865 38.462 0.00 0.00 34.62 1.89
5407 23683 6.355747 TGGATGACATAACAATGCTGACATA 58.644 36.000 0.00 0.00 34.62 2.29
5408 23684 5.195185 TGGATGACATAACAATGCTGACAT 58.805 37.500 0.00 0.00 38.49 3.06
5414 23690 8.931385 ATACTTTTTGGATGACATAACAATGC 57.069 30.769 6.02 0.00 0.00 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.