Multiple sequence alignment - TraesCS7A01G117900
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7A01G117900 | chr7A | 100.000 | 2430 | 0 | 0 | 1 | 2430 | 76193579 | 76191150 | 0.000000e+00 | 4488.0 |
1 | TraesCS7A01G117900 | chr7A | 81.908 | 1415 | 197 | 36 | 455 | 1829 | 76489833 | 76488438 | 0.000000e+00 | 1140.0 |
2 | TraesCS7A01G117900 | chr7A | 82.085 | 1362 | 163 | 55 | 455 | 1782 | 76501522 | 76500208 | 0.000000e+00 | 1088.0 |
3 | TraesCS7A01G117900 | chr7A | 81.272 | 1415 | 202 | 41 | 455 | 1829 | 76412449 | 76411058 | 0.000000e+00 | 1086.0 |
4 | TraesCS7A01G117900 | chr7A | 82.014 | 278 | 44 | 5 | 2145 | 2418 | 77024605 | 77024330 | 5.230000e-57 | 231.0 |
5 | TraesCS7A01G117900 | chr7B | 95.718 | 1985 | 68 | 8 | 452 | 2430 | 12184638 | 12182665 | 0.000000e+00 | 3179.0 |
6 | TraesCS7A01G117900 | chr7B | 82.961 | 1344 | 177 | 34 | 455 | 1763 | 12398567 | 12397241 | 0.000000e+00 | 1166.0 |
7 | TraesCS7A01G117900 | chr7B | 81.523 | 1353 | 188 | 39 | 455 | 1782 | 12409606 | 12408291 | 0.000000e+00 | 1057.0 |
8 | TraesCS7A01G117900 | chr7B | 77.518 | 1370 | 216 | 57 | 457 | 1768 | 13868367 | 13867032 | 0.000000e+00 | 739.0 |
9 | TraesCS7A01G117900 | chr7B | 85.306 | 245 | 29 | 5 | 2145 | 2384 | 14065783 | 14065541 | 1.870000e-61 | 246.0 |
10 | TraesCS7A01G117900 | chr7B | 82.787 | 244 | 39 | 2 | 2145 | 2385 | 13819323 | 13819080 | 5.260000e-52 | 215.0 |
11 | TraesCS7A01G117900 | chr7B | 88.050 | 159 | 14 | 4 | 44 | 202 | 12193295 | 12193142 | 1.480000e-42 | 183.0 |
12 | TraesCS7A01G117900 | chr7B | 86.777 | 121 | 13 | 2 | 59 | 178 | 13116816 | 13116698 | 5.450000e-27 | 132.0 |
13 | TraesCS7A01G117900 | chr7B | 86.555 | 119 | 14 | 1 | 59 | 177 | 13808591 | 13808475 | 1.960000e-26 | 130.0 |
14 | TraesCS7A01G117900 | chr7B | 85.950 | 121 | 14 | 2 | 59 | 178 | 14068243 | 14068125 | 2.540000e-25 | 126.0 |
15 | TraesCS7A01G117900 | chr7D | 96.439 | 1685 | 45 | 6 | 749 | 2430 | 69661270 | 69659598 | 0.000000e+00 | 2765.0 |
16 | TraesCS7A01G117900 | chr7D | 82.427 | 1343 | 185 | 33 | 455 | 1763 | 69819052 | 69817727 | 0.000000e+00 | 1125.0 |
17 | TraesCS7A01G117900 | chr7D | 81.885 | 1358 | 172 | 49 | 455 | 1782 | 69872048 | 69870735 | 0.000000e+00 | 1077.0 |
18 | TraesCS7A01G117900 | chr7D | 78.388 | 1365 | 211 | 50 | 452 | 1768 | 72169884 | 72171212 | 0.000000e+00 | 809.0 |
19 | TraesCS7A01G117900 | chr7D | 79.027 | 658 | 116 | 16 | 1127 | 1768 | 71361876 | 71362527 | 4.800000e-117 | 431.0 |
20 | TraesCS7A01G117900 | chr7D | 79.901 | 607 | 102 | 15 | 457 | 1053 | 71355957 | 71356553 | 6.210000e-116 | 427.0 |
21 | TraesCS7A01G117900 | chr7D | 99.510 | 204 | 1 | 0 | 1 | 204 | 69661686 | 69661483 | 2.950000e-99 | 372.0 |
22 | TraesCS7A01G117900 | chr7D | 85.470 | 351 | 47 | 2 | 1421 | 1768 | 71214603 | 71214254 | 1.780000e-96 | 363.0 |
23 | TraesCS7A01G117900 | chr7D | 84.496 | 258 | 32 | 6 | 2133 | 2384 | 71546018 | 71545763 | 5.190000e-62 | 248.0 |
24 | TraesCS7A01G117900 | chr7D | 88.333 | 120 | 12 | 1 | 59 | 178 | 71345272 | 71345389 | 2.520000e-30 | 143.0 |
25 | TraesCS7A01G117900 | chr7D | 85.000 | 120 | 16 | 1 | 59 | 178 | 71355640 | 71355757 | 1.180000e-23 | 121.0 |
26 | TraesCS7A01G117900 | chr7D | 100.000 | 54 | 0 | 0 | 312 | 365 | 69686570 | 69686623 | 1.540000e-17 | 100.0 |
27 | TraesCS7A01G117900 | chr7D | 100.000 | 53 | 0 | 0 | 366 | 418 | 69661483 | 69661431 | 5.530000e-17 | 99.0 |
28 | TraesCS7A01G117900 | chrUn | 77.712 | 1355 | 239 | 34 | 457 | 1768 | 82518161 | 82516827 | 0.000000e+00 | 771.0 |
29 | TraesCS7A01G117900 | chrUn | 82.450 | 302 | 39 | 10 | 2089 | 2384 | 84246698 | 84246405 | 4.010000e-63 | 252.0 |
30 | TraesCS7A01G117900 | chrUn | 84.082 | 245 | 32 | 5 | 2145 | 2384 | 82526201 | 82525959 | 1.880000e-56 | 230.0 |
31 | TraesCS7A01G117900 | chrUn | 85.088 | 114 | 15 | 1 | 65 | 178 | 84248844 | 84248733 | 5.490000e-22 | 115.0 |
32 | TraesCS7A01G117900 | chrUn | 100.000 | 54 | 0 | 0 | 312 | 365 | 418329020 | 418328967 | 1.540000e-17 | 100.0 |
33 | TraesCS7A01G117900 | chr2B | 79.242 | 660 | 111 | 18 | 1127 | 1768 | 723393955 | 723393304 | 1.030000e-118 | 436.0 |
34 | TraesCS7A01G117900 | chr2B | 87.500 | 120 | 13 | 1 | 59 | 178 | 723403273 | 723403156 | 1.170000e-28 | 137.0 |
35 | TraesCS7A01G117900 | chr4D | 100.000 | 54 | 0 | 0 | 312 | 365 | 35780483 | 35780536 | 1.540000e-17 | 100.0 |
36 | TraesCS7A01G117900 | chr4D | 100.000 | 54 | 0 | 0 | 312 | 365 | 348384428 | 348384481 | 1.540000e-17 | 100.0 |
37 | TraesCS7A01G117900 | chr3D | 100.000 | 54 | 0 | 0 | 312 | 365 | 158930434 | 158930487 | 1.540000e-17 | 100.0 |
38 | TraesCS7A01G117900 | chr3D | 100.000 | 54 | 0 | 0 | 312 | 365 | 158936549 | 158936602 | 1.540000e-17 | 100.0 |
39 | TraesCS7A01G117900 | chr1D | 100.000 | 54 | 0 | 0 | 312 | 365 | 177260807 | 177260860 | 1.540000e-17 | 100.0 |
40 | TraesCS7A01G117900 | chr1D | 100.000 | 54 | 0 | 0 | 312 | 365 | 283876765 | 283876712 | 1.540000e-17 | 100.0 |
41 | TraesCS7A01G117900 | chr5D | 100.000 | 53 | 0 | 0 | 313 | 365 | 432407485 | 432407433 | 5.530000e-17 | 99.0 |
42 | TraesCS7A01G117900 | chr6D | 100.000 | 51 | 0 | 0 | 204 | 254 | 108471547 | 108471597 | 7.150000e-16 | 95.3 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7A01G117900 | chr7A | 76191150 | 76193579 | 2429 | True | 4488.000000 | 4488 | 100.000000 | 1 | 2430 | 1 | chr7A.!!$R1 | 2429 |
1 | TraesCS7A01G117900 | chr7A | 76488438 | 76489833 | 1395 | True | 1140.000000 | 1140 | 81.908000 | 455 | 1829 | 1 | chr7A.!!$R3 | 1374 |
2 | TraesCS7A01G117900 | chr7A | 76500208 | 76501522 | 1314 | True | 1088.000000 | 1088 | 82.085000 | 455 | 1782 | 1 | chr7A.!!$R4 | 1327 |
3 | TraesCS7A01G117900 | chr7A | 76411058 | 76412449 | 1391 | True | 1086.000000 | 1086 | 81.272000 | 455 | 1829 | 1 | chr7A.!!$R2 | 1374 |
4 | TraesCS7A01G117900 | chr7B | 12182665 | 12184638 | 1973 | True | 3179.000000 | 3179 | 95.718000 | 452 | 2430 | 1 | chr7B.!!$R1 | 1978 |
5 | TraesCS7A01G117900 | chr7B | 12397241 | 12398567 | 1326 | True | 1166.000000 | 1166 | 82.961000 | 455 | 1763 | 1 | chr7B.!!$R3 | 1308 |
6 | TraesCS7A01G117900 | chr7B | 12408291 | 12409606 | 1315 | True | 1057.000000 | 1057 | 81.523000 | 455 | 1782 | 1 | chr7B.!!$R4 | 1327 |
7 | TraesCS7A01G117900 | chr7B | 13867032 | 13868367 | 1335 | True | 739.000000 | 739 | 77.518000 | 457 | 1768 | 1 | chr7B.!!$R8 | 1311 |
8 | TraesCS7A01G117900 | chr7D | 69817727 | 69819052 | 1325 | True | 1125.000000 | 1125 | 82.427000 | 455 | 1763 | 1 | chr7D.!!$R1 | 1308 |
9 | TraesCS7A01G117900 | chr7D | 69659598 | 69661686 | 2088 | True | 1078.666667 | 2765 | 98.649667 | 1 | 2430 | 3 | chr7D.!!$R5 | 2429 |
10 | TraesCS7A01G117900 | chr7D | 69870735 | 69872048 | 1313 | True | 1077.000000 | 1077 | 81.885000 | 455 | 1782 | 1 | chr7D.!!$R2 | 1327 |
11 | TraesCS7A01G117900 | chr7D | 72169884 | 72171212 | 1328 | False | 809.000000 | 809 | 78.388000 | 452 | 1768 | 1 | chr7D.!!$F4 | 1316 |
12 | TraesCS7A01G117900 | chr7D | 71361876 | 71362527 | 651 | False | 431.000000 | 431 | 79.027000 | 1127 | 1768 | 1 | chr7D.!!$F3 | 641 |
13 | TraesCS7A01G117900 | chr7D | 71355640 | 71356553 | 913 | False | 274.000000 | 427 | 82.450500 | 59 | 1053 | 2 | chr7D.!!$F5 | 994 |
14 | TraesCS7A01G117900 | chrUn | 82516827 | 82518161 | 1334 | True | 771.000000 | 771 | 77.712000 | 457 | 1768 | 1 | chrUn.!!$R1 | 1311 |
15 | TraesCS7A01G117900 | chr2B | 723393304 | 723393955 | 651 | True | 436.000000 | 436 | 79.242000 | 1127 | 1768 | 1 | chr2B.!!$R1 | 641 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
423 | 424 | 0.897621 | CCAAGTGGATTTTCTGCCCC | 59.102 | 55.000 | 0.00 | 0.0 | 37.39 | 5.80 | F |
1046 | 1143 | 1.227973 | GCAGGATTCTTAGCCGGGG | 60.228 | 63.158 | 2.18 | 0.0 | 34.10 | 5.73 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1227 | 1350 | 0.318955 | GCCATGTGACAACAGCCAAC | 60.319 | 55.000 | 0.0 | 0.0 | 40.39 | 3.77 | R |
1981 | 2142 | 4.019174 | CACTAGGGTTTTGAGCCATTCAT | 58.981 | 43.478 | 0.0 | 0.0 | 35.27 | 2.57 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
210 | 211 | 5.063180 | ACAACATTATGTCATGCCTTGTG | 57.937 | 39.130 | 0.00 | 0.00 | 27.71 | 3.33 |
211 | 212 | 4.766373 | ACAACATTATGTCATGCCTTGTGA | 59.234 | 37.500 | 0.00 | 0.00 | 27.71 | 3.58 |
212 | 213 | 5.419788 | ACAACATTATGTCATGCCTTGTGAT | 59.580 | 36.000 | 0.00 | 0.00 | 27.71 | 3.06 |
213 | 214 | 5.762825 | ACATTATGTCATGCCTTGTGATC | 57.237 | 39.130 | 0.00 | 0.00 | 0.00 | 2.92 |
214 | 215 | 5.443283 | ACATTATGTCATGCCTTGTGATCT | 58.557 | 37.500 | 0.00 | 0.00 | 0.00 | 2.75 |
215 | 216 | 5.530171 | ACATTATGTCATGCCTTGTGATCTC | 59.470 | 40.000 | 0.00 | 0.00 | 0.00 | 2.75 |
216 | 217 | 2.014335 | TGTCATGCCTTGTGATCTCG | 57.986 | 50.000 | 0.00 | 0.00 | 0.00 | 4.04 |
217 | 218 | 1.550072 | TGTCATGCCTTGTGATCTCGA | 59.450 | 47.619 | 0.00 | 0.00 | 0.00 | 4.04 |
218 | 219 | 2.028203 | TGTCATGCCTTGTGATCTCGAA | 60.028 | 45.455 | 0.00 | 0.00 | 0.00 | 3.71 |
219 | 220 | 2.349886 | GTCATGCCTTGTGATCTCGAAC | 59.650 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
220 | 221 | 2.028203 | TCATGCCTTGTGATCTCGAACA | 60.028 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
221 | 222 | 1.795768 | TGCCTTGTGATCTCGAACAC | 58.204 | 50.000 | 9.21 | 9.21 | 37.51 | 3.32 |
222 | 223 | 1.344438 | TGCCTTGTGATCTCGAACACT | 59.656 | 47.619 | 14.77 | 0.00 | 37.81 | 3.55 |
223 | 224 | 2.560981 | TGCCTTGTGATCTCGAACACTA | 59.439 | 45.455 | 14.77 | 8.82 | 37.81 | 2.74 |
224 | 225 | 2.924290 | GCCTTGTGATCTCGAACACTAC | 59.076 | 50.000 | 14.77 | 0.69 | 37.81 | 2.73 |
225 | 226 | 3.367498 | GCCTTGTGATCTCGAACACTACT | 60.367 | 47.826 | 14.77 | 0.00 | 37.81 | 2.57 |
226 | 227 | 4.810790 | CCTTGTGATCTCGAACACTACTT | 58.189 | 43.478 | 14.77 | 0.00 | 37.81 | 2.24 |
227 | 228 | 5.621555 | GCCTTGTGATCTCGAACACTACTTA | 60.622 | 44.000 | 14.77 | 0.00 | 37.81 | 2.24 |
228 | 229 | 6.565234 | CCTTGTGATCTCGAACACTACTTAT | 58.435 | 40.000 | 14.77 | 0.00 | 37.81 | 1.73 |
229 | 230 | 6.473778 | CCTTGTGATCTCGAACACTACTTATG | 59.526 | 42.308 | 14.77 | 0.00 | 37.81 | 1.90 |
230 | 231 | 6.753107 | TGTGATCTCGAACACTACTTATGA | 57.247 | 37.500 | 14.77 | 0.00 | 37.81 | 2.15 |
231 | 232 | 7.334844 | TGTGATCTCGAACACTACTTATGAT | 57.665 | 36.000 | 14.77 | 0.00 | 37.81 | 2.45 |
232 | 233 | 8.446599 | TGTGATCTCGAACACTACTTATGATA | 57.553 | 34.615 | 14.77 | 0.00 | 37.81 | 2.15 |
233 | 234 | 8.899771 | TGTGATCTCGAACACTACTTATGATAA | 58.100 | 33.333 | 14.77 | 0.00 | 37.81 | 1.75 |
234 | 235 | 9.900710 | GTGATCTCGAACACTACTTATGATAAT | 57.099 | 33.333 | 8.97 | 0.00 | 34.65 | 1.28 |
256 | 257 | 6.759497 | ATAAGAAATCCAAAGTACAGTGGC | 57.241 | 37.500 | 9.44 | 0.00 | 34.68 | 5.01 |
257 | 258 | 4.373156 | AGAAATCCAAAGTACAGTGGCT | 57.627 | 40.909 | 9.44 | 0.00 | 34.68 | 4.75 |
258 | 259 | 5.499004 | AGAAATCCAAAGTACAGTGGCTA | 57.501 | 39.130 | 9.44 | 0.00 | 34.68 | 3.93 |
259 | 260 | 6.067217 | AGAAATCCAAAGTACAGTGGCTAT | 57.933 | 37.500 | 9.44 | 0.00 | 34.68 | 2.97 |
260 | 261 | 7.195374 | AGAAATCCAAAGTACAGTGGCTATA | 57.805 | 36.000 | 9.44 | 0.00 | 34.68 | 1.31 |
261 | 262 | 7.275920 | AGAAATCCAAAGTACAGTGGCTATAG | 58.724 | 38.462 | 9.44 | 0.00 | 34.68 | 1.31 |
262 | 263 | 6.808321 | AATCCAAAGTACAGTGGCTATAGA | 57.192 | 37.500 | 3.21 | 0.00 | 34.68 | 1.98 |
263 | 264 | 6.808321 | ATCCAAAGTACAGTGGCTATAGAA | 57.192 | 37.500 | 3.21 | 0.00 | 34.68 | 2.10 |
264 | 265 | 6.614694 | TCCAAAGTACAGTGGCTATAGAAA | 57.385 | 37.500 | 3.21 | 0.00 | 34.68 | 2.52 |
265 | 266 | 6.640518 | TCCAAAGTACAGTGGCTATAGAAAG | 58.359 | 40.000 | 3.21 | 0.00 | 34.68 | 2.62 |
266 | 267 | 6.439375 | TCCAAAGTACAGTGGCTATAGAAAGA | 59.561 | 38.462 | 3.21 | 0.00 | 34.68 | 2.52 |
267 | 268 | 7.038587 | TCCAAAGTACAGTGGCTATAGAAAGAA | 60.039 | 37.037 | 3.21 | 0.00 | 34.68 | 2.52 |
268 | 269 | 7.606456 | CCAAAGTACAGTGGCTATAGAAAGAAA | 59.394 | 37.037 | 3.21 | 0.00 | 0.00 | 2.52 |
269 | 270 | 8.660373 | CAAAGTACAGTGGCTATAGAAAGAAAG | 58.340 | 37.037 | 3.21 | 0.00 | 0.00 | 2.62 |
270 | 271 | 6.879400 | AGTACAGTGGCTATAGAAAGAAAGG | 58.121 | 40.000 | 3.21 | 0.00 | 0.00 | 3.11 |
271 | 272 | 6.668283 | AGTACAGTGGCTATAGAAAGAAAGGA | 59.332 | 38.462 | 3.21 | 0.00 | 0.00 | 3.36 |
272 | 273 | 6.374417 | ACAGTGGCTATAGAAAGAAAGGAA | 57.626 | 37.500 | 3.21 | 0.00 | 0.00 | 3.36 |
273 | 274 | 6.410540 | ACAGTGGCTATAGAAAGAAAGGAAG | 58.589 | 40.000 | 3.21 | 0.00 | 0.00 | 3.46 |
274 | 275 | 6.213600 | ACAGTGGCTATAGAAAGAAAGGAAGA | 59.786 | 38.462 | 3.21 | 0.00 | 0.00 | 2.87 |
275 | 276 | 6.760770 | CAGTGGCTATAGAAAGAAAGGAAGAG | 59.239 | 42.308 | 3.21 | 0.00 | 0.00 | 2.85 |
276 | 277 | 6.442244 | AGTGGCTATAGAAAGAAAGGAAGAGT | 59.558 | 38.462 | 3.21 | 0.00 | 0.00 | 3.24 |
277 | 278 | 7.037945 | AGTGGCTATAGAAAGAAAGGAAGAGTT | 60.038 | 37.037 | 3.21 | 0.00 | 0.00 | 3.01 |
278 | 279 | 7.279090 | GTGGCTATAGAAAGAAAGGAAGAGTTC | 59.721 | 40.741 | 3.21 | 0.00 | 0.00 | 3.01 |
279 | 280 | 6.477360 | GGCTATAGAAAGAAAGGAAGAGTTCG | 59.523 | 42.308 | 3.21 | 0.00 | 0.00 | 3.95 |
280 | 281 | 7.259161 | GCTATAGAAAGAAAGGAAGAGTTCGA | 58.741 | 38.462 | 3.21 | 0.00 | 0.00 | 3.71 |
281 | 282 | 7.923878 | GCTATAGAAAGAAAGGAAGAGTTCGAT | 59.076 | 37.037 | 3.21 | 0.00 | 0.00 | 3.59 |
282 | 283 | 9.810545 | CTATAGAAAGAAAGGAAGAGTTCGATT | 57.189 | 33.333 | 0.00 | 0.00 | 0.00 | 3.34 |
283 | 284 | 6.793492 | AGAAAGAAAGGAAGAGTTCGATTG | 57.207 | 37.500 | 0.00 | 0.00 | 0.00 | 2.67 |
284 | 285 | 5.180304 | AGAAAGAAAGGAAGAGTTCGATTGC | 59.820 | 40.000 | 0.00 | 0.00 | 0.00 | 3.56 |
285 | 286 | 4.278975 | AGAAAGGAAGAGTTCGATTGCT | 57.721 | 40.909 | 0.00 | 0.00 | 0.00 | 3.91 |
286 | 287 | 4.646572 | AGAAAGGAAGAGTTCGATTGCTT | 58.353 | 39.130 | 0.00 | 0.00 | 38.53 | 3.91 |
287 | 288 | 4.453819 | AGAAAGGAAGAGTTCGATTGCTTG | 59.546 | 41.667 | 4.32 | 0.00 | 37.19 | 4.01 |
288 | 289 | 2.704572 | AGGAAGAGTTCGATTGCTTGG | 58.295 | 47.619 | 0.00 | 0.00 | 0.00 | 3.61 |
289 | 290 | 2.303022 | AGGAAGAGTTCGATTGCTTGGA | 59.697 | 45.455 | 0.00 | 0.00 | 0.00 | 3.53 |
290 | 291 | 2.675348 | GGAAGAGTTCGATTGCTTGGAG | 59.325 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
291 | 292 | 3.589988 | GAAGAGTTCGATTGCTTGGAGA | 58.410 | 45.455 | 0.00 | 0.00 | 0.00 | 3.71 |
292 | 293 | 3.685139 | AGAGTTCGATTGCTTGGAGAA | 57.315 | 42.857 | 0.00 | 0.00 | 0.00 | 2.87 |
293 | 294 | 3.594134 | AGAGTTCGATTGCTTGGAGAAG | 58.406 | 45.455 | 0.00 | 0.00 | 0.00 | 2.85 |
294 | 295 | 2.675348 | GAGTTCGATTGCTTGGAGAAGG | 59.325 | 50.000 | 0.00 | 0.00 | 0.00 | 3.46 |
295 | 296 | 2.039084 | AGTTCGATTGCTTGGAGAAGGT | 59.961 | 45.455 | 0.00 | 0.00 | 0.00 | 3.50 |
296 | 297 | 3.260884 | AGTTCGATTGCTTGGAGAAGGTA | 59.739 | 43.478 | 0.00 | 0.00 | 0.00 | 3.08 |
297 | 298 | 4.080863 | AGTTCGATTGCTTGGAGAAGGTAT | 60.081 | 41.667 | 0.00 | 0.00 | 0.00 | 2.73 |
298 | 299 | 4.487714 | TCGATTGCTTGGAGAAGGTATT | 57.512 | 40.909 | 0.00 | 0.00 | 0.00 | 1.89 |
299 | 300 | 4.442706 | TCGATTGCTTGGAGAAGGTATTC | 58.557 | 43.478 | 0.00 | 0.00 | 35.52 | 1.75 |
301 | 302 | 4.878397 | CGATTGCTTGGAGAAGGTATTCTT | 59.122 | 41.667 | 0.00 | 0.00 | 45.98 | 2.52 |
302 | 303 | 5.007136 | CGATTGCTTGGAGAAGGTATTCTTC | 59.993 | 44.000 | 0.00 | 0.00 | 45.98 | 2.87 |
312 | 313 | 5.074584 | GAAGGTATTCTTCTTGGTCGACT | 57.925 | 43.478 | 16.46 | 0.00 | 46.30 | 4.18 |
313 | 314 | 5.480205 | GAAGGTATTCTTCTTGGTCGACTT | 58.520 | 41.667 | 16.46 | 0.00 | 46.30 | 3.01 |
314 | 315 | 5.485209 | AGGTATTCTTCTTGGTCGACTTT | 57.515 | 39.130 | 16.46 | 0.00 | 0.00 | 2.66 |
315 | 316 | 5.866207 | AGGTATTCTTCTTGGTCGACTTTT | 58.134 | 37.500 | 16.46 | 0.00 | 0.00 | 2.27 |
316 | 317 | 6.296803 | AGGTATTCTTCTTGGTCGACTTTTT | 58.703 | 36.000 | 16.46 | 0.00 | 0.00 | 1.94 |
317 | 318 | 6.204882 | AGGTATTCTTCTTGGTCGACTTTTTG | 59.795 | 38.462 | 16.46 | 2.37 | 0.00 | 2.44 |
318 | 319 | 3.963383 | TCTTCTTGGTCGACTTTTTGC | 57.037 | 42.857 | 16.46 | 0.00 | 0.00 | 3.68 |
319 | 320 | 3.275143 | TCTTCTTGGTCGACTTTTTGCA | 58.725 | 40.909 | 16.46 | 0.12 | 0.00 | 4.08 |
320 | 321 | 3.882888 | TCTTCTTGGTCGACTTTTTGCAT | 59.117 | 39.130 | 16.46 | 0.00 | 0.00 | 3.96 |
321 | 322 | 5.060506 | TCTTCTTGGTCGACTTTTTGCATA | 58.939 | 37.500 | 16.46 | 0.00 | 0.00 | 3.14 |
322 | 323 | 5.529430 | TCTTCTTGGTCGACTTTTTGCATAA | 59.471 | 36.000 | 16.46 | 1.34 | 0.00 | 1.90 |
323 | 324 | 5.759506 | TCTTGGTCGACTTTTTGCATAAA | 57.240 | 34.783 | 16.46 | 2.28 | 0.00 | 1.40 |
324 | 325 | 6.137794 | TCTTGGTCGACTTTTTGCATAAAA | 57.862 | 33.333 | 16.46 | 5.46 | 34.13 | 1.52 |
325 | 326 | 6.565234 | TCTTGGTCGACTTTTTGCATAAAAA | 58.435 | 32.000 | 16.46 | 0.34 | 41.96 | 1.94 |
326 | 327 | 7.206687 | TCTTGGTCGACTTTTTGCATAAAAAT | 58.793 | 30.769 | 16.46 | 0.00 | 42.89 | 1.82 |
327 | 328 | 8.353684 | TCTTGGTCGACTTTTTGCATAAAAATA | 58.646 | 29.630 | 16.46 | 0.00 | 42.89 | 1.40 |
328 | 329 | 9.139174 | CTTGGTCGACTTTTTGCATAAAAATAT | 57.861 | 29.630 | 16.46 | 0.00 | 42.89 | 1.28 |
329 | 330 | 9.482627 | TTGGTCGACTTTTTGCATAAAAATATT | 57.517 | 25.926 | 16.46 | 0.00 | 42.89 | 1.28 |
330 | 331 | 9.482627 | TGGTCGACTTTTTGCATAAAAATATTT | 57.517 | 25.926 | 16.46 | 0.00 | 42.89 | 1.40 |
423 | 424 | 0.897621 | CCAAGTGGATTTTCTGCCCC | 59.102 | 55.000 | 0.00 | 0.00 | 37.39 | 5.80 |
424 | 425 | 1.550869 | CCAAGTGGATTTTCTGCCCCT | 60.551 | 52.381 | 0.00 | 0.00 | 37.39 | 4.79 |
434 | 435 | 5.891551 | GGATTTTCTGCCCCTTATTTGACTA | 59.108 | 40.000 | 0.00 | 0.00 | 0.00 | 2.59 |
435 | 436 | 6.039829 | GGATTTTCTGCCCCTTATTTGACTAG | 59.960 | 42.308 | 0.00 | 0.00 | 0.00 | 2.57 |
436 | 437 | 5.514500 | TTTCTGCCCCTTATTTGACTAGT | 57.486 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
437 | 438 | 4.487714 | TCTGCCCCTTATTTGACTAGTG | 57.512 | 45.455 | 0.00 | 0.00 | 0.00 | 2.74 |
438 | 439 | 4.101114 | TCTGCCCCTTATTTGACTAGTGA | 58.899 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
439 | 440 | 4.534500 | TCTGCCCCTTATTTGACTAGTGAA | 59.466 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
440 | 441 | 5.013704 | TCTGCCCCTTATTTGACTAGTGAAA | 59.986 | 40.000 | 10.01 | 10.01 | 0.00 | 2.69 |
441 | 442 | 5.636123 | TGCCCCTTATTTGACTAGTGAAAA | 58.364 | 37.500 | 11.61 | 7.14 | 0.00 | 2.29 |
442 | 443 | 6.071984 | TGCCCCTTATTTGACTAGTGAAAAA | 58.928 | 36.000 | 11.61 | 4.73 | 0.00 | 1.94 |
444 | 445 | 7.234577 | TGCCCCTTATTTGACTAGTGAAAAATT | 59.765 | 33.333 | 11.61 | 0.00 | 0.00 | 1.82 |
445 | 446 | 8.094548 | GCCCCTTATTTGACTAGTGAAAAATTT | 58.905 | 33.333 | 11.61 | 0.00 | 0.00 | 1.82 |
447 | 448 | 9.341899 | CCCTTATTTGACTAGTGAAAAATTTCG | 57.658 | 33.333 | 11.61 | 0.00 | 40.01 | 3.46 |
448 | 449 | 9.341899 | CCTTATTTGACTAGTGAAAAATTTCGG | 57.658 | 33.333 | 11.61 | 3.74 | 40.01 | 4.30 |
449 | 450 | 8.736751 | TTATTTGACTAGTGAAAAATTTCGGC | 57.263 | 30.769 | 11.61 | 0.00 | 40.01 | 5.54 |
450 | 451 | 5.759506 | TTGACTAGTGAAAAATTTCGGCA | 57.240 | 34.783 | 0.00 | 0.00 | 40.01 | 5.69 |
471 | 562 | 4.141482 | GCAGTTAGATGGGGAGGTTATTCA | 60.141 | 45.833 | 0.00 | 0.00 | 0.00 | 2.57 |
666 | 761 | 3.118629 | TGAAGCCATCACCAGTAGATCAC | 60.119 | 47.826 | 0.00 | 0.00 | 31.50 | 3.06 |
668 | 763 | 2.697751 | AGCCATCACCAGTAGATCACTC | 59.302 | 50.000 | 0.00 | 0.00 | 34.26 | 3.51 |
814 | 911 | 7.544566 | GCTGATCAAATTTCACAGAATTCATGT | 59.455 | 33.333 | 8.44 | 6.48 | 0.00 | 3.21 |
1046 | 1143 | 1.227973 | GCAGGATTCTTAGCCGGGG | 60.228 | 63.158 | 2.18 | 0.00 | 34.10 | 5.73 |
1063 | 1160 | 2.228103 | CGGGGTAAGAAAAGCCTGAAAC | 59.772 | 50.000 | 0.00 | 0.00 | 44.67 | 2.78 |
1071 | 1169 | 4.948847 | AGAAAAGCCTGAAACAAATGACC | 58.051 | 39.130 | 0.00 | 0.00 | 0.00 | 4.02 |
1207 | 1330 | 4.903045 | ACCTTTAGTGCCAGCTTAACTA | 57.097 | 40.909 | 0.00 | 0.00 | 0.00 | 2.24 |
1239 | 1362 | 1.873591 | CTGGTAGTGTTGGCTGTTGTC | 59.126 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
1265 | 1388 | 3.496884 | TGGCAAGTTCTGTTTGTATCGTC | 59.503 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
1332 | 1462 | 6.840780 | ACTTTATTTCTGCATGGCTAAACT | 57.159 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
1377 | 1517 | 2.625314 | CCCGAATGATCTACTCTGCTGA | 59.375 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
1430 | 1575 | 8.512956 | AGATGTTTTCTCACAATTCTGATTGAG | 58.487 | 33.333 | 6.17 | 0.00 | 44.37 | 3.02 |
1728 | 1884 | 3.960102 | TGCCTTTGTCATGGTTCTTCTTT | 59.040 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
1729 | 1885 | 4.405358 | TGCCTTTGTCATGGTTCTTCTTTT | 59.595 | 37.500 | 0.00 | 0.00 | 0.00 | 2.27 |
1894 | 2054 | 5.459434 | TGCAATGAATTTTATATGCACTGCG | 59.541 | 36.000 | 0.00 | 0.00 | 38.73 | 5.18 |
1900 | 2060 | 7.706159 | TGAATTTTATATGCACTGCGAAGAAT | 58.294 | 30.769 | 0.00 | 0.00 | 0.00 | 2.40 |
1903 | 2063 | 7.739022 | TTTTATATGCACTGCGAAGAATTTG | 57.261 | 32.000 | 0.00 | 0.00 | 0.00 | 2.32 |
1907 | 2067 | 3.779759 | TGCACTGCGAAGAATTTGTTTT | 58.220 | 36.364 | 0.00 | 0.00 | 0.00 | 2.43 |
1913 | 2074 | 5.108385 | TGCGAAGAATTTGTTTTCCTCTC | 57.892 | 39.130 | 0.00 | 0.00 | 0.00 | 3.20 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
46 | 47 | 6.779860 | TGAAAGGCTCATCCCTAATAATACC | 58.220 | 40.000 | 0.00 | 0.00 | 33.97 | 2.73 |
203 | 204 | 2.086054 | AGTGTTCGAGATCACAAGGC | 57.914 | 50.000 | 14.41 | 0.00 | 37.07 | 4.35 |
204 | 205 | 4.442375 | AGTAGTGTTCGAGATCACAAGG | 57.558 | 45.455 | 14.41 | 0.00 | 37.07 | 3.61 |
205 | 206 | 7.251281 | TCATAAGTAGTGTTCGAGATCACAAG | 58.749 | 38.462 | 14.41 | 0.47 | 37.07 | 3.16 |
206 | 207 | 7.153217 | TCATAAGTAGTGTTCGAGATCACAA | 57.847 | 36.000 | 14.41 | 0.00 | 37.07 | 3.33 |
207 | 208 | 6.753107 | TCATAAGTAGTGTTCGAGATCACA | 57.247 | 37.500 | 14.41 | 2.48 | 37.07 | 3.58 |
208 | 209 | 9.900710 | ATTATCATAAGTAGTGTTCGAGATCAC | 57.099 | 33.333 | 6.26 | 6.26 | 35.13 | 3.06 |
230 | 231 | 8.903820 | GCCACTGTACTTTGGATTTCTTATTAT | 58.096 | 33.333 | 15.32 | 0.00 | 34.46 | 1.28 |
231 | 232 | 8.107095 | AGCCACTGTACTTTGGATTTCTTATTA | 58.893 | 33.333 | 15.32 | 0.00 | 34.46 | 0.98 |
232 | 233 | 6.948309 | AGCCACTGTACTTTGGATTTCTTATT | 59.052 | 34.615 | 15.32 | 0.00 | 34.46 | 1.40 |
233 | 234 | 6.485171 | AGCCACTGTACTTTGGATTTCTTAT | 58.515 | 36.000 | 15.32 | 0.00 | 34.46 | 1.73 |
234 | 235 | 5.876357 | AGCCACTGTACTTTGGATTTCTTA | 58.124 | 37.500 | 15.32 | 0.00 | 34.46 | 2.10 |
235 | 236 | 4.729868 | AGCCACTGTACTTTGGATTTCTT | 58.270 | 39.130 | 15.32 | 0.00 | 34.46 | 2.52 |
236 | 237 | 4.373156 | AGCCACTGTACTTTGGATTTCT | 57.627 | 40.909 | 15.32 | 2.58 | 34.46 | 2.52 |
237 | 238 | 7.272978 | TCTATAGCCACTGTACTTTGGATTTC | 58.727 | 38.462 | 15.32 | 0.62 | 34.46 | 2.17 |
238 | 239 | 7.195374 | TCTATAGCCACTGTACTTTGGATTT | 57.805 | 36.000 | 15.32 | 8.17 | 34.46 | 2.17 |
239 | 240 | 6.808321 | TCTATAGCCACTGTACTTTGGATT | 57.192 | 37.500 | 15.32 | 6.72 | 34.46 | 3.01 |
240 | 241 | 6.808321 | TTCTATAGCCACTGTACTTTGGAT | 57.192 | 37.500 | 15.32 | 12.06 | 34.46 | 3.41 |
241 | 242 | 6.439375 | TCTTTCTATAGCCACTGTACTTTGGA | 59.561 | 38.462 | 15.32 | 0.00 | 34.46 | 3.53 |
242 | 243 | 6.640518 | TCTTTCTATAGCCACTGTACTTTGG | 58.359 | 40.000 | 8.54 | 8.54 | 35.81 | 3.28 |
243 | 244 | 8.547967 | TTTCTTTCTATAGCCACTGTACTTTG | 57.452 | 34.615 | 0.00 | 0.00 | 0.00 | 2.77 |
244 | 245 | 7.824779 | CCTTTCTTTCTATAGCCACTGTACTTT | 59.175 | 37.037 | 0.00 | 0.00 | 0.00 | 2.66 |
245 | 246 | 7.180408 | TCCTTTCTTTCTATAGCCACTGTACTT | 59.820 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
246 | 247 | 6.668283 | TCCTTTCTTTCTATAGCCACTGTACT | 59.332 | 38.462 | 0.00 | 0.00 | 0.00 | 2.73 |
247 | 248 | 6.875076 | TCCTTTCTTTCTATAGCCACTGTAC | 58.125 | 40.000 | 0.00 | 0.00 | 0.00 | 2.90 |
248 | 249 | 7.399191 | TCTTCCTTTCTTTCTATAGCCACTGTA | 59.601 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
249 | 250 | 6.213600 | TCTTCCTTTCTTTCTATAGCCACTGT | 59.786 | 38.462 | 0.00 | 0.00 | 0.00 | 3.55 |
250 | 251 | 6.644347 | TCTTCCTTTCTTTCTATAGCCACTG | 58.356 | 40.000 | 0.00 | 0.00 | 0.00 | 3.66 |
251 | 252 | 6.442244 | ACTCTTCCTTTCTTTCTATAGCCACT | 59.558 | 38.462 | 0.00 | 0.00 | 0.00 | 4.00 |
252 | 253 | 6.645306 | ACTCTTCCTTTCTTTCTATAGCCAC | 58.355 | 40.000 | 0.00 | 0.00 | 0.00 | 5.01 |
253 | 254 | 6.875972 | ACTCTTCCTTTCTTTCTATAGCCA | 57.124 | 37.500 | 0.00 | 0.00 | 0.00 | 4.75 |
254 | 255 | 6.477360 | CGAACTCTTCCTTTCTTTCTATAGCC | 59.523 | 42.308 | 0.00 | 0.00 | 0.00 | 3.93 |
255 | 256 | 7.259161 | TCGAACTCTTCCTTTCTTTCTATAGC | 58.741 | 38.462 | 0.00 | 0.00 | 0.00 | 2.97 |
256 | 257 | 9.810545 | AATCGAACTCTTCCTTTCTTTCTATAG | 57.189 | 33.333 | 0.00 | 0.00 | 0.00 | 1.31 |
257 | 258 | 9.587772 | CAATCGAACTCTTCCTTTCTTTCTATA | 57.412 | 33.333 | 0.00 | 0.00 | 0.00 | 1.31 |
258 | 259 | 7.065204 | GCAATCGAACTCTTCCTTTCTTTCTAT | 59.935 | 37.037 | 0.00 | 0.00 | 0.00 | 1.98 |
259 | 260 | 6.369065 | GCAATCGAACTCTTCCTTTCTTTCTA | 59.631 | 38.462 | 0.00 | 0.00 | 0.00 | 2.10 |
260 | 261 | 5.180304 | GCAATCGAACTCTTCCTTTCTTTCT | 59.820 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
261 | 262 | 5.180304 | AGCAATCGAACTCTTCCTTTCTTTC | 59.820 | 40.000 | 0.00 | 0.00 | 0.00 | 2.62 |
262 | 263 | 5.066593 | AGCAATCGAACTCTTCCTTTCTTT | 58.933 | 37.500 | 0.00 | 0.00 | 0.00 | 2.52 |
263 | 264 | 4.646572 | AGCAATCGAACTCTTCCTTTCTT | 58.353 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
264 | 265 | 4.278975 | AGCAATCGAACTCTTCCTTTCT | 57.721 | 40.909 | 0.00 | 0.00 | 0.00 | 2.52 |
265 | 266 | 4.378874 | CCAAGCAATCGAACTCTTCCTTTC | 60.379 | 45.833 | 0.00 | 0.00 | 0.00 | 2.62 |
266 | 267 | 3.503748 | CCAAGCAATCGAACTCTTCCTTT | 59.496 | 43.478 | 0.00 | 0.00 | 0.00 | 3.11 |
267 | 268 | 3.077359 | CCAAGCAATCGAACTCTTCCTT | 58.923 | 45.455 | 0.00 | 0.00 | 0.00 | 3.36 |
268 | 269 | 2.303022 | TCCAAGCAATCGAACTCTTCCT | 59.697 | 45.455 | 0.00 | 0.00 | 0.00 | 3.36 |
269 | 270 | 2.675348 | CTCCAAGCAATCGAACTCTTCC | 59.325 | 50.000 | 0.00 | 0.00 | 0.00 | 3.46 |
270 | 271 | 3.589988 | TCTCCAAGCAATCGAACTCTTC | 58.410 | 45.455 | 0.00 | 0.00 | 0.00 | 2.87 |
271 | 272 | 3.685139 | TCTCCAAGCAATCGAACTCTT | 57.315 | 42.857 | 0.00 | 0.00 | 0.00 | 2.85 |
272 | 273 | 3.594134 | CTTCTCCAAGCAATCGAACTCT | 58.406 | 45.455 | 0.00 | 0.00 | 0.00 | 3.24 |
273 | 274 | 2.675348 | CCTTCTCCAAGCAATCGAACTC | 59.325 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
274 | 275 | 2.039084 | ACCTTCTCCAAGCAATCGAACT | 59.961 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
275 | 276 | 2.427506 | ACCTTCTCCAAGCAATCGAAC | 58.572 | 47.619 | 0.00 | 0.00 | 0.00 | 3.95 |
276 | 277 | 2.859165 | ACCTTCTCCAAGCAATCGAA | 57.141 | 45.000 | 0.00 | 0.00 | 0.00 | 3.71 |
277 | 278 | 4.162320 | AGAATACCTTCTCCAAGCAATCGA | 59.838 | 41.667 | 0.00 | 0.00 | 37.09 | 3.59 |
278 | 279 | 4.446371 | AGAATACCTTCTCCAAGCAATCG | 58.554 | 43.478 | 0.00 | 0.00 | 37.09 | 3.34 |
279 | 280 | 6.370433 | GAAGAATACCTTCTCCAAGCAATC | 57.630 | 41.667 | 0.00 | 0.00 | 46.03 | 2.67 |
291 | 292 | 5.485209 | AAGTCGACCAAGAAGAATACCTT | 57.515 | 39.130 | 13.01 | 0.00 | 37.93 | 3.50 |
292 | 293 | 5.485209 | AAAGTCGACCAAGAAGAATACCT | 57.515 | 39.130 | 13.01 | 0.00 | 0.00 | 3.08 |
293 | 294 | 6.371389 | CAAAAAGTCGACCAAGAAGAATACC | 58.629 | 40.000 | 13.01 | 0.00 | 0.00 | 2.73 |
294 | 295 | 5.851703 | GCAAAAAGTCGACCAAGAAGAATAC | 59.148 | 40.000 | 13.01 | 0.00 | 0.00 | 1.89 |
295 | 296 | 5.529430 | TGCAAAAAGTCGACCAAGAAGAATA | 59.471 | 36.000 | 13.01 | 0.00 | 0.00 | 1.75 |
296 | 297 | 4.338118 | TGCAAAAAGTCGACCAAGAAGAAT | 59.662 | 37.500 | 13.01 | 0.00 | 0.00 | 2.40 |
297 | 298 | 3.692101 | TGCAAAAAGTCGACCAAGAAGAA | 59.308 | 39.130 | 13.01 | 0.00 | 0.00 | 2.52 |
298 | 299 | 3.275143 | TGCAAAAAGTCGACCAAGAAGA | 58.725 | 40.909 | 13.01 | 0.00 | 0.00 | 2.87 |
299 | 300 | 3.691049 | TGCAAAAAGTCGACCAAGAAG | 57.309 | 42.857 | 13.01 | 0.00 | 0.00 | 2.85 |
300 | 301 | 5.759506 | TTATGCAAAAAGTCGACCAAGAA | 57.240 | 34.783 | 13.01 | 0.00 | 0.00 | 2.52 |
301 | 302 | 5.759506 | TTTATGCAAAAAGTCGACCAAGA | 57.240 | 34.783 | 13.01 | 0.00 | 0.00 | 3.02 |
302 | 303 | 6.820470 | TTTTTATGCAAAAAGTCGACCAAG | 57.180 | 33.333 | 13.01 | 0.00 | 38.42 | 3.61 |
303 | 304 | 9.482627 | AATATTTTTATGCAAAAAGTCGACCAA | 57.517 | 25.926 | 13.01 | 0.00 | 44.57 | 3.67 |
304 | 305 | 9.482627 | AAATATTTTTATGCAAAAAGTCGACCA | 57.517 | 25.926 | 13.01 | 1.73 | 44.57 | 4.02 |
362 | 363 | 9.975218 | ACAGTTTTATCTGATAAAATACCCTGT | 57.025 | 29.630 | 28.75 | 28.75 | 43.98 | 4.00 |
419 | 420 | 6.584185 | TTTTTCACTAGTCAAATAAGGGGC | 57.416 | 37.500 | 0.00 | 0.00 | 0.00 | 5.80 |
423 | 424 | 8.850452 | GCCGAAATTTTTCACTAGTCAAATAAG | 58.150 | 33.333 | 0.00 | 0.00 | 37.01 | 1.73 |
424 | 425 | 8.353684 | TGCCGAAATTTTTCACTAGTCAAATAA | 58.646 | 29.630 | 0.00 | 0.00 | 37.01 | 1.40 |
434 | 435 | 6.381801 | CATCTAACTGCCGAAATTTTTCACT | 58.618 | 36.000 | 4.12 | 0.00 | 37.01 | 3.41 |
435 | 436 | 5.572896 | CCATCTAACTGCCGAAATTTTTCAC | 59.427 | 40.000 | 4.12 | 0.00 | 37.01 | 3.18 |
436 | 437 | 5.336372 | CCCATCTAACTGCCGAAATTTTTCA | 60.336 | 40.000 | 4.12 | 0.00 | 37.01 | 2.69 |
437 | 438 | 5.102313 | CCCATCTAACTGCCGAAATTTTTC | 58.898 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
438 | 439 | 4.081697 | CCCCATCTAACTGCCGAAATTTTT | 60.082 | 41.667 | 0.00 | 0.00 | 0.00 | 1.94 |
439 | 440 | 3.447229 | CCCCATCTAACTGCCGAAATTTT | 59.553 | 43.478 | 0.00 | 0.00 | 0.00 | 1.82 |
440 | 441 | 3.023832 | CCCCATCTAACTGCCGAAATTT | 58.976 | 45.455 | 0.00 | 0.00 | 0.00 | 1.82 |
441 | 442 | 2.241176 | TCCCCATCTAACTGCCGAAATT | 59.759 | 45.455 | 0.00 | 0.00 | 0.00 | 1.82 |
442 | 443 | 1.843851 | TCCCCATCTAACTGCCGAAAT | 59.156 | 47.619 | 0.00 | 0.00 | 0.00 | 2.17 |
444 | 445 | 0.830648 | CTCCCCATCTAACTGCCGAA | 59.169 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
445 | 446 | 1.048724 | CCTCCCCATCTAACTGCCGA | 61.049 | 60.000 | 0.00 | 0.00 | 0.00 | 5.54 |
447 | 448 | 0.919710 | AACCTCCCCATCTAACTGCC | 59.080 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
448 | 449 | 4.141482 | TGAATAACCTCCCCATCTAACTGC | 60.141 | 45.833 | 0.00 | 0.00 | 0.00 | 4.40 |
449 | 450 | 5.630415 | TGAATAACCTCCCCATCTAACTG | 57.370 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
450 | 451 | 6.043706 | CAGATGAATAACCTCCCCATCTAACT | 59.956 | 42.308 | 0.00 | 0.00 | 41.17 | 2.24 |
471 | 562 | 7.255730 | GCCAATAGAATTTGATAAGGTGCAGAT | 60.256 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
666 | 761 | 5.574891 | TTCTCTTTCCTCTCTTGATCGAG | 57.425 | 43.478 | 3.24 | 3.24 | 0.00 | 4.04 |
668 | 763 | 5.900425 | TGATTCTCTTTCCTCTCTTGATCG | 58.100 | 41.667 | 0.00 | 0.00 | 0.00 | 3.69 |
814 | 911 | 4.202141 | GCATTTTGGACATTAGCAGCCATA | 60.202 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
1024 | 1121 | 1.625818 | CCGGCTAAGAATCCTGCCTAT | 59.374 | 52.381 | 0.00 | 0.00 | 42.90 | 2.57 |
1046 | 1143 | 6.420903 | GGTCATTTGTTTCAGGCTTTTCTTAC | 59.579 | 38.462 | 0.00 | 0.00 | 0.00 | 2.34 |
1071 | 1169 | 9.093970 | TGAAACAGAACTGTAATTACCATATCG | 57.906 | 33.333 | 13.01 | 1.12 | 44.13 | 2.92 |
1106 | 1211 | 5.312974 | TGCAGGGGATAATCCATCATTAGAA | 59.687 | 40.000 | 0.00 | 0.00 | 38.64 | 2.10 |
1207 | 1330 | 6.291377 | CCAACACTACCAGATTGCTATATGT | 58.709 | 40.000 | 2.24 | 0.00 | 0.00 | 2.29 |
1227 | 1350 | 0.318955 | GCCATGTGACAACAGCCAAC | 60.319 | 55.000 | 0.00 | 0.00 | 40.39 | 3.77 |
1239 | 1362 | 3.441496 | ACAAACAGAACTTGCCATGTG | 57.559 | 42.857 | 0.00 | 0.00 | 0.00 | 3.21 |
1265 | 1388 | 1.013596 | TGCCAAAACTATCATCGGCG | 58.986 | 50.000 | 0.00 | 0.00 | 42.57 | 6.46 |
1332 | 1462 | 8.977412 | GGGAAATGAAATAACAATAGAAAGGGA | 58.023 | 33.333 | 0.00 | 0.00 | 0.00 | 4.20 |
1728 | 1884 | 2.816337 | CGGGGCTAAAAGTTCCTGGAAA | 60.816 | 50.000 | 11.40 | 0.00 | 0.00 | 3.13 |
1729 | 1885 | 1.271707 | CGGGGCTAAAAGTTCCTGGAA | 60.272 | 52.381 | 4.68 | 4.68 | 0.00 | 3.53 |
1894 | 2054 | 9.755804 | ATCAAAAGAGAGGAAAACAAATTCTTC | 57.244 | 29.630 | 0.00 | 0.00 | 36.10 | 2.87 |
1900 | 2060 | 8.533569 | AACCTATCAAAAGAGAGGAAAACAAA | 57.466 | 30.769 | 12.65 | 0.00 | 37.05 | 2.83 |
1903 | 2063 | 6.943146 | AGGAACCTATCAAAAGAGAGGAAAAC | 59.057 | 38.462 | 12.65 | 1.31 | 37.05 | 2.43 |
1907 | 2067 | 4.471386 | CCAGGAACCTATCAAAAGAGAGGA | 59.529 | 45.833 | 12.65 | 0.00 | 37.05 | 3.71 |
1913 | 2074 | 7.112779 | ACTCAATACCAGGAACCTATCAAAAG | 58.887 | 38.462 | 0.00 | 0.00 | 0.00 | 2.27 |
1981 | 2142 | 4.019174 | CACTAGGGTTTTGAGCCATTCAT | 58.981 | 43.478 | 0.00 | 0.00 | 35.27 | 2.57 |
2347 | 2508 | 4.890158 | TCAAATCTCTAAGCTCCACACA | 57.110 | 40.909 | 0.00 | 0.00 | 0.00 | 3.72 |
![](/static/images/cyverse_long.png)
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.