Multiple sequence alignment - TraesCS7A01G116500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G116500 chr7A 100.000 3748 0 0 1 3748 74600244 74603991 0.000000e+00 6922.0
1 TraesCS7A01G116500 chr7A 84.989 946 56 32 1648 2567 71134188 71133303 0.000000e+00 881.0
2 TraesCS7A01G116500 chr7A 90.312 609 33 9 962 1569 71134747 71134164 0.000000e+00 774.0
3 TraesCS7A01G116500 chr7A 80.261 537 80 21 858 1378 70767386 70766860 7.600000e-102 381.0
4 TraesCS7A01G116500 chr7A 90.948 232 16 3 3517 3748 71120484 71120258 1.310000e-79 307.0
5 TraesCS7A01G116500 chr7A 99.296 142 1 0 3182 3323 74603284 74603425 1.340000e-64 257.0
6 TraesCS7A01G116500 chr7A 99.296 142 1 0 3041 3182 74603425 74603566 1.340000e-64 257.0
7 TraesCS7A01G116500 chr7A 85.782 211 17 7 2081 2279 71120546 71120337 1.050000e-50 211.0
8 TraesCS7A01G116500 chr7A 80.751 213 13 10 3333 3519 71120642 71120432 1.400000e-29 141.0
9 TraesCS7A01G116500 chr7A 88.235 102 11 1 806 906 71134932 71134831 1.830000e-23 121.0
10 TraesCS7A01G116500 chr1B 82.223 2267 219 90 806 2973 678116445 678114264 0.000000e+00 1784.0
11 TraesCS7A01G116500 chr1B 86.919 344 16 6 3313 3629 678114197 678113856 3.560000e-95 359.0
12 TraesCS7A01G116500 chr7B 86.911 1528 106 40 806 2304 10208300 10209762 0.000000e+00 1628.0
13 TraesCS7A01G116500 chr7B 88.121 1027 53 11 2121 3113 9812732 9813723 0.000000e+00 1157.0
14 TraesCS7A01G116500 chr7B 90.056 885 46 9 2123 2970 10209762 10210641 0.000000e+00 1109.0
15 TraesCS7A01G116500 chr7B 89.460 797 51 14 806 1574 9811271 9812062 0.000000e+00 976.0
16 TraesCS7A01G116500 chr7B 89.688 737 46 12 800 1516 10101857 10102583 0.000000e+00 913.0
17 TraesCS7A01G116500 chr7B 91.052 637 35 9 1744 2375 10102677 10103296 0.000000e+00 841.0
18 TraesCS7A01G116500 chr7B 87.965 565 23 6 3193 3725 10210686 10211237 3.180000e-175 625.0
19 TraesCS7A01G116500 chr7B 91.685 457 18 6 1634 2089 9812088 9812525 1.910000e-172 616.0
20 TraesCS7A01G116500 chr7B 86.505 578 24 15 3192 3748 9813662 9814206 1.500000e-163 586.0
21 TraesCS7A01G116500 chr7B 94.397 232 13 0 3517 3748 10104121 10104352 1.280000e-94 357.0
22 TraesCS7A01G116500 chr7B 81.818 462 46 16 2467 2926 10103373 10103798 1.660000e-93 353.0
23 TraesCS7A01G116500 chr7B 81.043 422 59 16 863 1267 10880945 10881362 2.170000e-82 316.0
24 TraesCS7A01G116500 chr7B 83.976 337 47 7 932 1267 10892065 10892395 2.170000e-82 316.0
25 TraesCS7A01G116500 chr7B 81.538 325 48 9 2551 2869 7558908 7558590 1.340000e-64 257.0
26 TraesCS7A01G116500 chr7B 79.808 312 34 14 2081 2366 10104058 10104366 2.280000e-47 200.0
27 TraesCS7A01G116500 chr7B 89.362 141 5 1 3052 3182 10210686 10210826 6.440000e-38 169.0
28 TraesCS7A01G116500 chr7B 80.569 211 12 10 3337 3520 10103966 10104174 6.530000e-28 135.0
29 TraesCS7A01G116500 chr7D 90.221 1268 56 22 1744 2973 66516499 66515262 0.000000e+00 1592.0
30 TraesCS7A01G116500 chr7D 90.931 838 44 15 806 1623 66538867 66538042 0.000000e+00 1098.0
31 TraesCS7A01G116500 chr7D 90.859 722 50 11 800 1516 66517303 66516593 0.000000e+00 953.0
32 TraesCS7A01G116500 chr7D 88.780 713 60 14 806 1516 68801493 68802187 0.000000e+00 856.0
33 TraesCS7A01G116500 chr7D 87.947 755 49 25 2467 3182 68803040 68803791 0.000000e+00 852.0
34 TraesCS7A01G116500 chr7D 88.671 715 36 16 2410 3092 68802957 68803658 0.000000e+00 830.0
35 TraesCS7A01G116500 chr7D 90.909 561 26 6 1744 2293 68802281 68802827 0.000000e+00 730.0
36 TraesCS7A01G116500 chr7D 85.396 719 77 18 2220 2926 68921189 68921891 0.000000e+00 721.0
37 TraesCS7A01G116500 chr7D 97.794 408 9 0 1106 1513 68918930 68919337 0.000000e+00 704.0
38 TraesCS7A01G116500 chr7D 98.365 367 6 0 1723 2089 68919464 68919830 0.000000e+00 645.0
39 TraesCS7A01G116500 chr7D 92.355 327 13 9 800 1115 68917428 68917753 4.410000e-124 455.0
40 TraesCS7A01G116500 chr7D 81.594 527 76 15 860 1381 66376078 66375568 2.080000e-112 416.0
41 TraesCS7A01G116500 chr7D 95.142 247 11 1 3498 3744 68803937 68804182 4.540000e-104 388.0
42 TraesCS7A01G116500 chr7D 86.034 358 35 4 926 1280 69019194 69019539 1.640000e-98 370.0
43 TraesCS7A01G116500 chr7D 86.787 333 12 10 3219 3520 68803677 68804008 3.580000e-90 342.0
44 TraesCS7A01G116500 chr7D 91.892 222 15 1 3517 3738 68922220 68922438 1.310000e-79 307.0
45 TraesCS7A01G116500 chr7D 80.128 468 46 18 2666 3109 68911256 68911700 4.700000e-79 305.0
46 TraesCS7A01G116500 chr7D 88.940 217 14 6 3221 3427 66515193 66514977 3.710000e-65 259.0
47 TraesCS7A01G116500 chr7D 94.904 157 8 0 3592 3748 66514905 66514749 2.890000e-61 246.0
48 TraesCS7A01G116500 chr7D 79.290 338 43 16 2610 2932 66514508 66514183 1.050000e-50 211.0
49 TraesCS7A01G116500 chr7D 84.906 212 16 7 2081 2279 68922157 68922365 2.280000e-47 200.0
50 TraesCS7A01G116500 chr7D 78.689 305 32 18 2100 2380 66545613 66545318 4.980000e-39 172.0
51 TraesCS7A01G116500 chr7D 90.435 115 2 1 1554 1659 68919334 68919448 3.900000e-30 143.0
52 TraesCS7A01G116500 chr7D 76.768 297 38 15 2097 2380 68910732 68911010 1.820000e-28 137.0
53 TraesCS7A01G116500 chr7D 98.305 59 1 0 3192 3250 68911642 68911700 1.840000e-18 104.0
54 TraesCS7A01G116500 chr7D 96.491 57 2 0 3316 3372 68911742 68911798 1.110000e-15 95.3
55 TraesCS7A01G116500 chr7D 100.000 40 0 0 3194 3233 68803619 68803658 1.440000e-09 75.0
56 TraesCS7A01G116500 chr7D 100.000 31 0 0 3053 3083 68911699 68911729 1.450000e-04 58.4
57 TraesCS7A01G116500 chr7D 100.000 31 0 0 3194 3224 68911699 68911729 1.450000e-04 58.4
58 TraesCS7A01G116500 chr1D 84.271 1297 112 33 1722 2973 486925633 486924384 0.000000e+00 1181.0
59 TraesCS7A01G116500 chr1D 87.243 729 65 14 962 1686 486926411 486925707 0.000000e+00 806.0
60 TraesCS7A01G116500 chr1D 89.236 641 58 5 3 635 375354374 375355011 0.000000e+00 791.0
61 TraesCS7A01G116500 chr1D 86.842 684 72 12 3 672 61981068 61981747 0.000000e+00 749.0
62 TraesCS7A01G116500 chr1D 86.784 681 72 9 3 668 439114756 439114079 0.000000e+00 743.0
63 TraesCS7A01G116500 chr1D 94.154 325 17 2 3425 3748 486923985 486923662 9.350000e-136 494.0
64 TraesCS7A01G116500 chr1D 85.167 209 10 4 3192 3390 486924343 486924146 1.060000e-45 195.0
65 TraesCS7A01G116500 chr1D 87.500 120 5 6 3051 3160 486924343 486924224 3.040000e-26 130.0
66 TraesCS7A01G116500 chr2B 87.555 683 70 8 3 673 152470164 152470843 0.000000e+00 776.0
67 TraesCS7A01G116500 chr2D 87.135 684 69 7 3 670 580616997 580617677 0.000000e+00 758.0
68 TraesCS7A01G116500 chr2D 90.588 85 4 3 2126 2208 648502788 648502706 3.960000e-20 110.0
69 TraesCS7A01G116500 chr5D 86.823 683 72 10 3 669 35290752 35291432 0.000000e+00 747.0
70 TraesCS7A01G116500 chr5D 86.289 671 83 8 3 671 264488414 264489077 0.000000e+00 721.0
71 TraesCS7A01G116500 chr5D 81.612 484 56 22 1974 2436 235711288 235710817 1.640000e-98 370.0
72 TraesCS7A01G116500 chr6D 87.256 667 68 10 17 669 434946615 434947278 0.000000e+00 745.0
73 TraesCS7A01G116500 chr6D 81.557 488 49 27 1974 2436 242423444 242422973 7.650000e-97 364.0
74 TraesCS7A01G116500 chr5A 86.892 679 70 10 3 671 673083197 673083866 0.000000e+00 743.0
75 TraesCS7A01G116500 chr4B 87.383 428 34 10 2141 2554 258794756 258794335 1.220000e-129 473.0
76 TraesCS7A01G116500 chr4B 91.743 327 26 1 2565 2891 258794357 258794032 1.590000e-123 453.0
77 TraesCS7A01G116500 chr3A 93.088 217 11 3 3447 3660 694350571 694350786 7.810000e-82 315.0
78 TraesCS7A01G116500 chr3A 93.088 217 11 3 3447 3660 706161660 706161875 7.810000e-82 315.0
79 TraesCS7A01G116500 chr2A 93.088 217 11 3 3447 3660 122822772 122822557 7.810000e-82 315.0
80 TraesCS7A01G116500 chr2A 92.166 217 13 3 3447 3660 580706310 580706095 1.690000e-78 303.0
81 TraesCS7A01G116500 chr2A 91.705 217 13 4 3447 3660 489254595 489254381 2.830000e-76 296.0
82 TraesCS7A01G116500 chr4A 92.166 217 13 3 3447 3660 297114445 297114660 1.690000e-78 303.0
83 TraesCS7A01G116500 chr1A 91.244 217 15 3 3447 3660 502318200 502318415 3.660000e-75 292.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G116500 chr7A 74600244 74603991 3747 False 2478.666667 6922 99.530667 1 3748 3 chr7A.!!$F1 3747
1 TraesCS7A01G116500 chr7A 71133303 71134932 1629 True 592.000000 881 87.845333 806 2567 3 chr7A.!!$R3 1761
2 TraesCS7A01G116500 chr7A 70766860 70767386 526 True 381.000000 381 80.261000 858 1378 1 chr7A.!!$R1 520
3 TraesCS7A01G116500 chr1B 678113856 678116445 2589 True 1071.500000 1784 84.571000 806 3629 2 chr1B.!!$R1 2823
4 TraesCS7A01G116500 chr7B 10208300 10211237 2937 False 882.750000 1628 88.573500 806 3725 4 chr7B.!!$F5 2919
5 TraesCS7A01G116500 chr7B 9811271 9814206 2935 False 833.750000 1157 88.942750 806 3748 4 chr7B.!!$F3 2942
6 TraesCS7A01G116500 chr7B 10101857 10104366 2509 False 466.500000 913 86.222000 800 3748 6 chr7B.!!$F4 2948
7 TraesCS7A01G116500 chr7D 66538042 66538867 825 True 1098.000000 1098 90.931000 806 1623 1 chr7D.!!$R2 817
8 TraesCS7A01G116500 chr7D 66514183 66517303 3120 True 652.200000 1592 88.842800 800 3748 5 chr7D.!!$R4 2948
9 TraesCS7A01G116500 chr7D 68801493 68804182 2689 False 581.857143 856 91.176571 806 3744 7 chr7D.!!$F2 2938
10 TraesCS7A01G116500 chr7D 68917428 68922438 5010 False 453.571429 721 91.591857 800 3738 7 chr7D.!!$F4 2938
11 TraesCS7A01G116500 chr7D 66375568 66376078 510 True 416.000000 416 81.594000 860 1381 1 chr7D.!!$R1 521
12 TraesCS7A01G116500 chr1D 375354374 375355011 637 False 791.000000 791 89.236000 3 635 1 chr1D.!!$F2 632
13 TraesCS7A01G116500 chr1D 61981068 61981747 679 False 749.000000 749 86.842000 3 672 1 chr1D.!!$F1 669
14 TraesCS7A01G116500 chr1D 439114079 439114756 677 True 743.000000 743 86.784000 3 668 1 chr1D.!!$R1 665
15 TraesCS7A01G116500 chr1D 486923662 486926411 2749 True 561.200000 1181 87.667000 962 3748 5 chr1D.!!$R2 2786
16 TraesCS7A01G116500 chr2B 152470164 152470843 679 False 776.000000 776 87.555000 3 673 1 chr2B.!!$F1 670
17 TraesCS7A01G116500 chr2D 580616997 580617677 680 False 758.000000 758 87.135000 3 670 1 chr2D.!!$F1 667
18 TraesCS7A01G116500 chr5D 35290752 35291432 680 False 747.000000 747 86.823000 3 669 1 chr5D.!!$F1 666
19 TraesCS7A01G116500 chr5D 264488414 264489077 663 False 721.000000 721 86.289000 3 671 1 chr5D.!!$F2 668
20 TraesCS7A01G116500 chr6D 434946615 434947278 663 False 745.000000 745 87.256000 17 669 1 chr6D.!!$F1 652
21 TraesCS7A01G116500 chr5A 673083197 673083866 669 False 743.000000 743 86.892000 3 671 1 chr5A.!!$F1 668
22 TraesCS7A01G116500 chr4B 258794032 258794756 724 True 463.000000 473 89.563000 2141 2891 2 chr4B.!!$R1 750

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
923 968 0.034477 CACCTTGAAATACCCCGCCT 60.034 55.0 0.00 0.0 0.00 5.52 F
1546 2832 0.031585 CGGAACTATCGATTGGGCGA 59.968 55.0 1.71 0.0 45.22 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2389 5356 0.243636 GTGCCGAATGGGAAAACTGG 59.756 55.0 0.00 0.00 37.33 4.00 R
3325 6444 0.463654 ACTTGAAACGGCAGTGCTGA 60.464 50.0 30.43 4.81 38.46 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.170607 AGTTAGCCATAGCATTGTCCGT 59.829 45.455 0.00 0.00 43.56 4.69
190 196 3.282745 GACCTTGTCGGAGCTGCGA 62.283 63.158 27.32 27.32 36.31 5.10
283 290 4.162690 GAAGGGCCGCAGATCCGT 62.163 66.667 0.00 0.00 0.00 4.69
291 298 1.467342 GCCGCAGATCCGTAACTTTTT 59.533 47.619 0.00 0.00 0.00 1.94
292 299 2.727916 GCCGCAGATCCGTAACTTTTTG 60.728 50.000 0.00 0.00 0.00 2.44
300 307 1.797211 CGTAACTTTTTGGCCCGCCA 61.797 55.000 3.74 3.74 45.63 5.69
310 317 3.830192 GCCCGCCAATGCAGGAAG 61.830 66.667 0.00 0.00 37.20 3.46
311 318 2.045045 CCCGCCAATGCAGGAAGA 60.045 61.111 0.00 0.00 37.20 2.87
338 345 3.269347 GCAACCTCGTGCGTGTGT 61.269 61.111 0.00 0.00 34.21 3.72
347 354 2.970324 TGCGTGTGTCGGCCTTTC 60.970 61.111 0.00 0.00 40.26 2.62
386 393 1.165270 CTTTCGCCGAAATCTTGGGT 58.835 50.000 13.29 0.00 30.85 4.51
390 405 3.051392 GCCGAAATCTTGGGTGGCG 62.051 63.158 0.00 0.00 32.14 5.69
426 441 2.856988 GGGAGGTGGTTGGTGGGA 60.857 66.667 0.00 0.00 0.00 4.37
434 449 0.684805 TGGTTGGTGGGAAAAAGCGT 60.685 50.000 0.00 0.00 0.00 5.07
525 540 3.206957 GTATTCGCGGGTTGGGGC 61.207 66.667 6.13 0.00 0.00 5.80
552 567 3.758931 GCCGCGCCCCTCAAAAAT 61.759 61.111 0.00 0.00 0.00 1.82
559 574 1.535028 CGCCCCTCAAAAATTTTTGCC 59.465 47.619 30.37 17.59 45.35 4.52
563 578 1.535028 CCTCAAAAATTTTTGCCGGCC 59.465 47.619 30.37 6.44 45.35 6.13
590 605 1.637724 TTTGTGGGGTCTGTTCGGGT 61.638 55.000 0.00 0.00 0.00 5.28
591 606 2.032071 GTGGGGTCTGTTCGGGTG 59.968 66.667 0.00 0.00 0.00 4.61
592 607 3.246112 TGGGGTCTGTTCGGGTGG 61.246 66.667 0.00 0.00 0.00 4.61
593 608 2.926242 GGGGTCTGTTCGGGTGGA 60.926 66.667 0.00 0.00 0.00 4.02
594 609 2.522367 GGGGTCTGTTCGGGTGGAA 61.522 63.158 0.00 0.00 0.00 3.53
595 610 1.683441 GGGTCTGTTCGGGTGGAAT 59.317 57.895 0.00 0.00 36.92 3.01
596 611 0.037734 GGGTCTGTTCGGGTGGAATT 59.962 55.000 0.00 0.00 36.92 2.17
597 612 1.546998 GGGTCTGTTCGGGTGGAATTT 60.547 52.381 0.00 0.00 36.92 1.82
598 613 2.235891 GGTCTGTTCGGGTGGAATTTT 58.764 47.619 0.00 0.00 36.92 1.82
599 614 2.228103 GGTCTGTTCGGGTGGAATTTTC 59.772 50.000 0.00 0.00 36.92 2.29
608 623 4.162640 GGAATTTTCCGCGCCAAC 57.837 55.556 0.00 0.00 37.65 3.77
609 624 1.445410 GGAATTTTCCGCGCCAACC 60.445 57.895 0.00 0.00 37.65 3.77
610 625 1.445410 GAATTTTCCGCGCCAACCC 60.445 57.895 0.00 0.00 0.00 4.11
611 626 3.275832 AATTTTCCGCGCCAACCCG 62.276 57.895 0.00 0.00 0.00 5.28
619 634 2.647875 CGCCAACCCGCATTTTGA 59.352 55.556 0.00 0.00 0.00 2.69
620 635 1.732683 CGCCAACCCGCATTTTGAC 60.733 57.895 0.00 0.00 0.00 3.18
621 636 1.732683 GCCAACCCGCATTTTGACG 60.733 57.895 0.00 0.00 0.00 4.35
630 645 4.560396 CCGCATTTTGACGGTTATTTTG 57.440 40.909 0.00 0.00 44.46 2.44
631 646 3.984633 CCGCATTTTGACGGTTATTTTGT 59.015 39.130 0.00 0.00 44.46 2.83
632 647 4.143431 CCGCATTTTGACGGTTATTTTGTG 60.143 41.667 0.00 0.00 44.46 3.33
633 648 4.143431 CGCATTTTGACGGTTATTTTGTGG 60.143 41.667 0.00 0.00 0.00 4.17
634 649 4.151512 GCATTTTGACGGTTATTTTGTGGG 59.848 41.667 0.00 0.00 0.00 4.61
635 650 5.293560 CATTTTGACGGTTATTTTGTGGGT 58.706 37.500 0.00 0.00 0.00 4.51
636 651 4.571372 TTTGACGGTTATTTTGTGGGTC 57.429 40.909 0.00 0.00 0.00 4.46
637 652 2.144730 TGACGGTTATTTTGTGGGTCG 58.855 47.619 0.00 0.00 0.00 4.79
638 653 1.465777 GACGGTTATTTTGTGGGTCGG 59.534 52.381 0.00 0.00 0.00 4.79
639 654 0.806241 CGGTTATTTTGTGGGTCGGG 59.194 55.000 0.00 0.00 0.00 5.14
640 655 1.611148 CGGTTATTTTGTGGGTCGGGA 60.611 52.381 0.00 0.00 0.00 5.14
641 656 2.730382 GGTTATTTTGTGGGTCGGGAT 58.270 47.619 0.00 0.00 0.00 3.85
642 657 3.093814 GGTTATTTTGTGGGTCGGGATT 58.906 45.455 0.00 0.00 0.00 3.01
643 658 3.512329 GGTTATTTTGTGGGTCGGGATTT 59.488 43.478 0.00 0.00 0.00 2.17
644 659 4.020928 GGTTATTTTGTGGGTCGGGATTTT 60.021 41.667 0.00 0.00 0.00 1.82
645 660 5.511716 GGTTATTTTGTGGGTCGGGATTTTT 60.512 40.000 0.00 0.00 0.00 1.94
662 677 3.334583 TTTTTGCGGATCTGCTAGAGT 57.665 42.857 26.32 0.00 35.36 3.24
663 678 3.334583 TTTTGCGGATCTGCTAGAGTT 57.665 42.857 26.32 0.00 35.36 3.01
664 679 2.299993 TTGCGGATCTGCTAGAGTTG 57.700 50.000 26.32 0.00 35.36 3.16
665 680 0.179100 TGCGGATCTGCTAGAGTTGC 60.179 55.000 26.32 0.00 35.36 4.17
666 681 0.103937 GCGGATCTGCTAGAGTTGCT 59.896 55.000 19.63 0.00 0.00 3.91
667 682 1.867698 GCGGATCTGCTAGAGTTGCTC 60.868 57.143 19.63 0.00 0.00 4.26
668 683 1.680735 CGGATCTGCTAGAGTTGCTCT 59.319 52.381 4.02 4.02 43.83 4.09
669 684 2.881513 CGGATCTGCTAGAGTTGCTCTA 59.118 50.000 0.00 5.84 41.50 2.43
670 685 3.316588 CGGATCTGCTAGAGTTGCTCTAA 59.683 47.826 7.22 0.00 41.74 2.10
671 686 4.616953 GGATCTGCTAGAGTTGCTCTAAC 58.383 47.826 7.22 4.03 41.74 2.34
679 694 1.419374 AGTTGCTCTAACTCGTTGCG 58.581 50.000 0.00 0.00 46.55 4.85
680 695 1.137513 GTTGCTCTAACTCGTTGCGT 58.862 50.000 0.00 0.00 36.34 5.24
681 696 1.525619 GTTGCTCTAACTCGTTGCGTT 59.474 47.619 0.00 0.00 36.34 4.84
682 697 1.136690 TGCTCTAACTCGTTGCGTTG 58.863 50.000 0.00 0.00 0.00 4.10
683 698 1.269361 TGCTCTAACTCGTTGCGTTGA 60.269 47.619 0.00 0.00 0.00 3.18
684 699 1.387084 GCTCTAACTCGTTGCGTTGAG 59.613 52.381 0.00 0.00 38.21 3.02
696 711 0.928229 GCGTTGAGCGTACAATAGGG 59.072 55.000 0.00 0.00 43.66 3.53
697 712 1.470285 GCGTTGAGCGTACAATAGGGA 60.470 52.381 0.00 0.00 43.66 4.20
698 713 2.802057 GCGTTGAGCGTACAATAGGGAT 60.802 50.000 0.00 0.00 43.66 3.85
699 714 3.454375 CGTTGAGCGTACAATAGGGATT 58.546 45.455 0.00 0.00 35.54 3.01
700 715 3.869246 CGTTGAGCGTACAATAGGGATTT 59.131 43.478 0.00 0.00 35.54 2.17
701 716 4.331717 CGTTGAGCGTACAATAGGGATTTT 59.668 41.667 0.00 0.00 35.54 1.82
702 717 5.569413 GTTGAGCGTACAATAGGGATTTTG 58.431 41.667 0.00 0.00 32.36 2.44
703 718 3.625764 TGAGCGTACAATAGGGATTTTGC 59.374 43.478 0.00 0.00 0.00 3.68
704 719 2.612212 AGCGTACAATAGGGATTTTGCG 59.388 45.455 0.00 0.00 34.96 4.85
705 720 2.853281 GCGTACAATAGGGATTTTGCGC 60.853 50.000 0.00 0.00 45.15 6.09
706 721 2.286772 CGTACAATAGGGATTTTGCGCC 60.287 50.000 4.18 0.00 26.92 6.53
707 722 0.738389 ACAATAGGGATTTTGCGCCG 59.262 50.000 4.18 0.00 0.00 6.46
708 723 0.594796 CAATAGGGATTTTGCGCCGC 60.595 55.000 4.18 0.00 0.00 6.53
709 724 2.058829 AATAGGGATTTTGCGCCGCG 62.059 55.000 8.83 8.83 0.00 6.46
713 728 4.398598 GATTTTGCGCCGCGGTGT 62.399 61.111 36.59 19.34 0.00 4.16
714 729 4.698651 ATTTTGCGCCGCGGTGTG 62.699 61.111 36.59 22.92 0.00 3.82
722 737 3.124921 CCGCGGTGTGGCTAAAGG 61.125 66.667 19.50 0.00 0.00 3.11
723 738 2.047655 CGCGGTGTGGCTAAAGGA 60.048 61.111 0.00 0.00 0.00 3.36
724 739 1.669760 CGCGGTGTGGCTAAAGGAA 60.670 57.895 0.00 0.00 0.00 3.36
725 740 1.231958 CGCGGTGTGGCTAAAGGAAA 61.232 55.000 0.00 0.00 0.00 3.13
726 741 0.240145 GCGGTGTGGCTAAAGGAAAC 59.760 55.000 0.00 0.00 0.00 2.78
727 742 1.600023 CGGTGTGGCTAAAGGAAACA 58.400 50.000 0.00 0.00 0.00 2.83
728 743 1.265905 CGGTGTGGCTAAAGGAAACAC 59.734 52.381 0.00 0.00 40.28 3.32
729 744 2.303175 GGTGTGGCTAAAGGAAACACA 58.697 47.619 6.58 0.00 42.26 3.72
730 745 2.890945 GGTGTGGCTAAAGGAAACACAT 59.109 45.455 6.58 0.00 43.05 3.21
731 746 3.057526 GGTGTGGCTAAAGGAAACACATC 60.058 47.826 6.58 0.00 43.05 3.06
732 747 3.568007 GTGTGGCTAAAGGAAACACATCA 59.432 43.478 0.00 0.00 43.05 3.07
733 748 4.218417 GTGTGGCTAAAGGAAACACATCAT 59.782 41.667 0.00 0.00 43.05 2.45
734 749 4.218200 TGTGGCTAAAGGAAACACATCATG 59.782 41.667 0.00 0.00 37.16 3.07
735 750 4.218417 GTGGCTAAAGGAAACACATCATGT 59.782 41.667 0.00 0.00 46.42 3.21
746 761 2.119801 ACATCATGTGAGTGGGCTTC 57.880 50.000 0.00 0.00 0.00 3.86
747 762 1.632409 ACATCATGTGAGTGGGCTTCT 59.368 47.619 0.00 0.00 0.00 2.85
748 763 2.840038 ACATCATGTGAGTGGGCTTCTA 59.160 45.455 0.00 0.00 0.00 2.10
749 764 3.201290 CATCATGTGAGTGGGCTTCTAC 58.799 50.000 0.00 0.00 0.00 2.59
750 765 2.256306 TCATGTGAGTGGGCTTCTACA 58.744 47.619 0.00 0.00 0.00 2.74
751 766 2.840038 TCATGTGAGTGGGCTTCTACAT 59.160 45.455 0.00 0.00 0.00 2.29
752 767 3.264193 TCATGTGAGTGGGCTTCTACATT 59.736 43.478 0.00 0.00 0.00 2.71
753 768 3.788227 TGTGAGTGGGCTTCTACATTT 57.212 42.857 0.00 0.00 0.00 2.32
754 769 4.098914 TGTGAGTGGGCTTCTACATTTT 57.901 40.909 0.00 0.00 0.00 1.82
755 770 4.469657 TGTGAGTGGGCTTCTACATTTTT 58.530 39.130 0.00 0.00 0.00 1.94
782 797 8.829514 TTTTGACGTATTGTGTTTTGTCTTAG 57.170 30.769 0.00 0.00 0.00 2.18
783 798 6.533819 TGACGTATTGTGTTTTGTCTTAGG 57.466 37.500 0.00 0.00 0.00 2.69
784 799 5.467399 TGACGTATTGTGTTTTGTCTTAGGG 59.533 40.000 0.00 0.00 0.00 3.53
785 800 5.370679 ACGTATTGTGTTTTGTCTTAGGGT 58.629 37.500 0.00 0.00 0.00 4.34
786 801 5.237779 ACGTATTGTGTTTTGTCTTAGGGTG 59.762 40.000 0.00 0.00 0.00 4.61
787 802 5.334569 CGTATTGTGTTTTGTCTTAGGGTGG 60.335 44.000 0.00 0.00 0.00 4.61
788 803 3.935818 TGTGTTTTGTCTTAGGGTGGA 57.064 42.857 0.00 0.00 0.00 4.02
789 804 4.447138 TGTGTTTTGTCTTAGGGTGGAT 57.553 40.909 0.00 0.00 0.00 3.41
790 805 5.570205 TGTGTTTTGTCTTAGGGTGGATA 57.430 39.130 0.00 0.00 0.00 2.59
791 806 5.310451 TGTGTTTTGTCTTAGGGTGGATAC 58.690 41.667 0.00 0.00 0.00 2.24
792 807 5.072600 TGTGTTTTGTCTTAGGGTGGATACT 59.927 40.000 0.00 0.00 37.61 2.12
793 808 6.270463 TGTGTTTTGTCTTAGGGTGGATACTA 59.730 38.462 0.00 0.00 37.61 1.82
794 809 6.592994 GTGTTTTGTCTTAGGGTGGATACTAC 59.407 42.308 0.00 0.00 37.61 2.73
795 810 6.499350 TGTTTTGTCTTAGGGTGGATACTACT 59.501 38.462 0.00 0.00 37.61 2.57
796 811 6.540438 TTTGTCTTAGGGTGGATACTACTG 57.460 41.667 0.00 0.00 37.61 2.74
797 812 4.543689 TGTCTTAGGGTGGATACTACTGG 58.456 47.826 0.00 0.00 37.61 4.00
798 813 4.016851 TGTCTTAGGGTGGATACTACTGGT 60.017 45.833 0.00 0.00 37.61 4.00
906 929 1.071814 TAACCGTCCCAACCAGCAC 59.928 57.895 0.00 0.00 0.00 4.40
910 933 2.260869 CGTCCCAACCAGCACCTTG 61.261 63.158 0.00 0.00 0.00 3.61
911 934 1.150536 GTCCCAACCAGCACCTTGA 59.849 57.895 0.00 0.00 0.00 3.02
912 935 0.467290 GTCCCAACCAGCACCTTGAA 60.467 55.000 0.00 0.00 0.00 2.69
913 947 0.260230 TCCCAACCAGCACCTTGAAA 59.740 50.000 0.00 0.00 0.00 2.69
915 949 2.109128 TCCCAACCAGCACCTTGAAATA 59.891 45.455 0.00 0.00 0.00 1.40
920 965 1.094785 CAGCACCTTGAAATACCCCG 58.905 55.000 0.00 0.00 0.00 5.73
922 967 1.663379 GCACCTTGAAATACCCCGCC 61.663 60.000 0.00 0.00 0.00 6.13
923 968 0.034477 CACCTTGAAATACCCCGCCT 60.034 55.000 0.00 0.00 0.00 5.52
1544 2830 0.249911 AGCGGAACTATCGATTGGGC 60.250 55.000 1.71 4.89 0.00 5.36
1545 2831 1.557443 GCGGAACTATCGATTGGGCG 61.557 60.000 1.71 0.00 0.00 6.13
1546 2832 0.031585 CGGAACTATCGATTGGGCGA 59.968 55.000 1.71 0.00 45.22 5.54
1547 2833 1.537348 CGGAACTATCGATTGGGCGAA 60.537 52.381 1.71 0.00 44.22 4.70
1548 2834 2.767505 GGAACTATCGATTGGGCGAAT 58.232 47.619 1.71 0.00 44.22 3.34
1549 2835 3.139077 GGAACTATCGATTGGGCGAATT 58.861 45.455 1.71 0.00 44.22 2.17
1550 2836 3.564225 GGAACTATCGATTGGGCGAATTT 59.436 43.478 1.71 0.00 44.22 1.82
1551 2837 4.527564 GAACTATCGATTGGGCGAATTTG 58.472 43.478 1.71 0.00 44.22 2.32
1552 2838 2.878406 ACTATCGATTGGGCGAATTTGG 59.122 45.455 1.71 0.00 44.22 3.28
1553 2839 1.762708 ATCGATTGGGCGAATTTGGT 58.237 45.000 0.00 0.00 44.22 3.67
1554 2840 1.540267 TCGATTGGGCGAATTTGGTT 58.460 45.000 0.00 0.00 37.35 3.67
1555 2841 1.470890 TCGATTGGGCGAATTTGGTTC 59.529 47.619 0.00 0.00 37.35 3.62
1556 2842 1.472480 CGATTGGGCGAATTTGGTTCT 59.528 47.619 0.00 0.00 34.56 3.01
1557 2843 2.477863 CGATTGGGCGAATTTGGTTCTC 60.478 50.000 0.00 0.00 34.56 2.87
1558 2844 2.286365 TTGGGCGAATTTGGTTCTCT 57.714 45.000 0.00 0.00 34.56 3.10
1717 3156 5.966742 AAAAGAATTGAGTACCCTGCTTC 57.033 39.130 0.00 0.00 0.00 3.86
1718 3157 3.252974 AGAATTGAGTACCCTGCTTCG 57.747 47.619 0.00 0.00 0.00 3.79
1719 3158 2.567615 AGAATTGAGTACCCTGCTTCGT 59.432 45.455 0.00 0.00 0.00 3.85
1720 3159 3.767673 AGAATTGAGTACCCTGCTTCGTA 59.232 43.478 0.00 0.00 0.00 3.43
1855 3301 1.611673 CCAACTTCGCCTGGAACTCAT 60.612 52.381 0.00 0.00 34.35 2.90
1998 3444 2.343426 ACTGCTCGTCGATCTGCCA 61.343 57.895 0.00 0.00 0.00 4.92
2176 3846 3.885297 ACTGTTGTATTCTGCAACTGCTT 59.115 39.130 12.42 0.00 44.27 3.91
2279 5224 7.168135 GCATTATGCCTTCTGTAAAAATGCTAC 59.832 37.037 5.80 0.00 42.75 3.58
2280 5225 7.938140 TTATGCCTTCTGTAAAAATGCTACT 57.062 32.000 0.00 0.00 0.00 2.57
2281 5226 9.627123 ATTATGCCTTCTGTAAAAATGCTACTA 57.373 29.630 0.00 0.00 0.00 1.82
2350 5300 5.241403 TCACATTAAACCCTGACACAGAT 57.759 39.130 0.00 0.00 32.44 2.90
2438 5426 4.510340 TCGCTTGTAGAAACTTTGGAACTC 59.490 41.667 0.00 0.00 0.00 3.01
2756 5774 6.336566 TGTCAATGCAGAGTAGAGAAAGATC 58.663 40.000 0.00 0.00 0.00 2.75
2827 5850 1.205655 CCTCGGACTGTGTGACATGAT 59.794 52.381 0.00 0.00 0.00 2.45
2918 5943 8.547173 AGATAAACTTGATTCATTCTCCAGACT 58.453 33.333 0.00 0.00 0.00 3.24
2929 5954 3.893089 TCCAGACTGGAGGAACCTT 57.107 52.632 20.74 0.00 42.67 3.50
2955 5980 7.010160 TCCCTTGTGGTTCTAAATTTCAGAAT 58.990 34.615 0.00 0.00 34.67 2.40
3007 6041 5.350365 TGGTCTGTAATGATTGCGTTCTTAC 59.650 40.000 0.00 0.00 0.00 2.34
3039 6073 6.245115 CTACTTCAGCATTTGAATGTGTGA 57.755 37.500 5.68 6.29 44.48 3.58
3040 6074 5.518848 ACTTCAGCATTTGAATGTGTGAA 57.481 34.783 16.11 16.11 44.48 3.18
3042 6076 5.771153 TTCAGCATTTGAATGTGTGAAGA 57.229 34.783 14.38 1.72 40.82 2.87
3043 6077 5.771153 TCAGCATTTGAATGTGTGAAGAA 57.229 34.783 5.68 0.00 38.65 2.52
3044 6078 6.146601 TCAGCATTTGAATGTGTGAAGAAA 57.853 33.333 5.68 0.00 38.65 2.52
3045 6079 6.751157 TCAGCATTTGAATGTGTGAAGAAAT 58.249 32.000 5.68 0.00 38.65 2.17
3046 6080 7.211573 TCAGCATTTGAATGTGTGAAGAAATT 58.788 30.769 5.68 0.00 38.65 1.82
3047 6081 8.358895 TCAGCATTTGAATGTGTGAAGAAATTA 58.641 29.630 5.68 0.00 38.65 1.40
3048 6082 9.146984 CAGCATTTGAATGTGTGAAGAAATTAT 57.853 29.630 5.68 0.00 38.65 1.28
3112 6179 3.610637 GCAATGGCATTGGTTGTGT 57.389 47.368 34.19 0.03 40.57 3.72
3113 6180 1.881591 GCAATGGCATTGGTTGTGTT 58.118 45.000 34.19 0.17 40.57 3.32
3114 6181 1.799994 GCAATGGCATTGGTTGTGTTC 59.200 47.619 34.19 16.08 40.57 3.18
3115 6182 2.548493 GCAATGGCATTGGTTGTGTTCT 60.548 45.455 34.19 0.00 40.57 3.01
3116 6183 3.731089 CAATGGCATTGGTTGTGTTCTT 58.269 40.909 28.45 0.00 36.63 2.52
3117 6184 2.886862 TGGCATTGGTTGTGTTCTTG 57.113 45.000 0.00 0.00 0.00 3.02
3118 6185 2.106566 TGGCATTGGTTGTGTTCTTGT 58.893 42.857 0.00 0.00 0.00 3.16
3119 6186 2.499289 TGGCATTGGTTGTGTTCTTGTT 59.501 40.909 0.00 0.00 0.00 2.83
3120 6187 3.701542 TGGCATTGGTTGTGTTCTTGTTA 59.298 39.130 0.00 0.00 0.00 2.41
3121 6188 4.343526 TGGCATTGGTTGTGTTCTTGTTAT 59.656 37.500 0.00 0.00 0.00 1.89
3122 6189 5.163364 TGGCATTGGTTGTGTTCTTGTTATT 60.163 36.000 0.00 0.00 0.00 1.40
3123 6190 5.177327 GGCATTGGTTGTGTTCTTGTTATTG 59.823 40.000 0.00 0.00 0.00 1.90
3124 6191 5.333263 GCATTGGTTGTGTTCTTGTTATTGC 60.333 40.000 0.00 0.00 0.00 3.56
3125 6192 5.590530 TTGGTTGTGTTCTTGTTATTGCT 57.409 34.783 0.00 0.00 0.00 3.91
3126 6193 4.930963 TGGTTGTGTTCTTGTTATTGCTG 58.069 39.130 0.00 0.00 0.00 4.41
3127 6194 3.735746 GGTTGTGTTCTTGTTATTGCTGC 59.264 43.478 0.00 0.00 0.00 5.25
3128 6195 4.499696 GGTTGTGTTCTTGTTATTGCTGCT 60.500 41.667 0.00 0.00 0.00 4.24
3129 6196 5.278266 GGTTGTGTTCTTGTTATTGCTGCTA 60.278 40.000 0.00 0.00 0.00 3.49
3130 6197 5.356882 TGTGTTCTTGTTATTGCTGCTAC 57.643 39.130 0.00 0.00 0.00 3.58
3131 6198 5.063204 TGTGTTCTTGTTATTGCTGCTACT 58.937 37.500 0.00 0.00 0.00 2.57
3132 6199 5.530915 TGTGTTCTTGTTATTGCTGCTACTT 59.469 36.000 0.00 0.00 0.00 2.24
3133 6200 6.080406 GTGTTCTTGTTATTGCTGCTACTTC 58.920 40.000 0.00 0.00 0.00 3.01
3134 6201 5.762711 TGTTCTTGTTATTGCTGCTACTTCA 59.237 36.000 0.00 0.00 0.00 3.02
3135 6202 6.073058 TGTTCTTGTTATTGCTGCTACTTCAG 60.073 38.462 0.00 0.00 37.15 3.02
3148 6215 2.997485 ACTTCAGCTTTTGAATCGCC 57.003 45.000 0.00 0.00 44.48 5.54
3149 6216 2.229792 ACTTCAGCTTTTGAATCGCCA 58.770 42.857 0.00 0.00 44.48 5.69
3150 6217 2.622942 ACTTCAGCTTTTGAATCGCCAA 59.377 40.909 0.00 0.00 44.48 4.52
3151 6218 2.995466 TCAGCTTTTGAATCGCCAAG 57.005 45.000 0.00 0.00 31.34 3.61
3152 6219 2.229792 TCAGCTTTTGAATCGCCAAGT 58.770 42.857 0.00 0.00 31.34 3.16
3153 6220 2.030893 TCAGCTTTTGAATCGCCAAGTG 60.031 45.455 0.00 0.00 31.34 3.16
3154 6221 1.063031 GCTTTTGAATCGCCAAGTGC 58.937 50.000 0.00 0.00 0.00 4.40
3155 6222 1.602668 GCTTTTGAATCGCCAAGTGCA 60.603 47.619 0.00 0.00 41.33 4.57
3156 6223 2.927871 GCTTTTGAATCGCCAAGTGCAT 60.928 45.455 0.00 0.00 41.33 3.96
3157 6224 3.319755 CTTTTGAATCGCCAAGTGCATT 58.680 40.909 0.00 0.00 41.33 3.56
3158 6225 3.383620 TTTGAATCGCCAAGTGCATTT 57.616 38.095 0.00 0.00 41.33 2.32
3159 6226 2.350899 TGAATCGCCAAGTGCATTTG 57.649 45.000 14.58 14.58 41.33 2.32
3160 6227 1.885233 TGAATCGCCAAGTGCATTTGA 59.115 42.857 22.24 3.98 41.33 2.69
3161 6228 2.295629 TGAATCGCCAAGTGCATTTGAA 59.704 40.909 22.24 8.50 41.33 2.69
3162 6229 3.056678 TGAATCGCCAAGTGCATTTGAAT 60.057 39.130 22.24 10.26 41.33 2.57
3163 6230 2.350899 TCGCCAAGTGCATTTGAATG 57.649 45.000 22.24 11.54 41.33 2.67
3164 6231 1.612950 TCGCCAAGTGCATTTGAATGT 59.387 42.857 22.24 0.00 41.33 2.71
3165 6232 1.987770 CGCCAAGTGCATTTGAATGTC 59.012 47.619 22.24 5.95 41.33 3.06
3166 6233 2.607526 CGCCAAGTGCATTTGAATGTCA 60.608 45.455 22.24 2.17 41.33 3.58
3167 6234 2.733026 GCCAAGTGCATTTGAATGTCAC 59.267 45.455 22.24 16.45 40.48 3.67
3168 6235 3.553508 GCCAAGTGCATTTGAATGTCACT 60.554 43.478 22.24 19.01 46.08 3.41
3169 6236 3.985279 CCAAGTGCATTTGAATGTCACTG 59.015 43.478 22.24 17.98 44.80 3.66
3170 6237 3.928727 AGTGCATTTGAATGTCACTGG 57.071 42.857 21.66 0.00 44.36 4.00
3171 6238 3.225104 AGTGCATTTGAATGTCACTGGT 58.775 40.909 21.66 8.26 44.36 4.00
3172 6239 3.638160 AGTGCATTTGAATGTCACTGGTT 59.362 39.130 21.66 8.03 44.36 3.67
3173 6240 3.983344 GTGCATTTGAATGTCACTGGTTC 59.017 43.478 16.71 0.00 38.83 3.62
3174 6241 3.005684 TGCATTTGAATGTCACTGGTTCC 59.994 43.478 5.68 0.00 38.65 3.62
3175 6242 3.256631 GCATTTGAATGTCACTGGTTCCT 59.743 43.478 5.68 0.00 38.65 3.36
3176 6243 4.616835 GCATTTGAATGTCACTGGTTCCTC 60.617 45.833 5.68 0.00 38.65 3.71
3177 6244 4.437682 TTTGAATGTCACTGGTTCCTCT 57.562 40.909 0.00 0.00 0.00 3.69
3178 6245 4.437682 TTGAATGTCACTGGTTCCTCTT 57.562 40.909 0.00 0.00 0.00 2.85
3179 6246 5.560722 TTGAATGTCACTGGTTCCTCTTA 57.439 39.130 0.00 0.00 0.00 2.10
3180 6247 5.152623 TGAATGTCACTGGTTCCTCTTAG 57.847 43.478 0.00 0.00 0.00 2.18
3181 6248 4.838423 TGAATGTCACTGGTTCCTCTTAGA 59.162 41.667 0.00 0.00 0.00 2.10
3182 6249 5.047021 TGAATGTCACTGGTTCCTCTTAGAG 60.047 44.000 1.56 1.56 0.00 2.43
3183 6250 4.114015 TGTCACTGGTTCCTCTTAGAGA 57.886 45.455 11.32 0.00 0.00 3.10
3184 6251 4.480115 TGTCACTGGTTCCTCTTAGAGAA 58.520 43.478 11.32 0.67 0.00 2.87
3185 6252 4.899457 TGTCACTGGTTCCTCTTAGAGAAA 59.101 41.667 11.32 0.00 0.00 2.52
3186 6253 5.544176 TGTCACTGGTTCCTCTTAGAGAAAT 59.456 40.000 11.32 0.00 0.00 2.17
3187 6254 6.043243 TGTCACTGGTTCCTCTTAGAGAAATT 59.957 38.462 11.32 0.00 0.00 1.82
3188 6255 7.234782 TGTCACTGGTTCCTCTTAGAGAAATTA 59.765 37.037 11.32 0.00 0.00 1.40
3189 6256 8.261522 GTCACTGGTTCCTCTTAGAGAAATTAT 58.738 37.037 11.32 0.00 0.00 1.28
3190 6257 9.488762 TCACTGGTTCCTCTTAGAGAAATTATA 57.511 33.333 11.32 0.00 0.00 0.98
3191 6258 9.535878 CACTGGTTCCTCTTAGAGAAATTATAC 57.464 37.037 11.32 0.00 0.00 1.47
3192 6259 9.268282 ACTGGTTCCTCTTAGAGAAATTATACA 57.732 33.333 11.32 0.00 0.00 2.29
3215 6282 8.545229 ACATTTCTCTAAGATGTCAACTTGAG 57.455 34.615 5.65 9.68 28.29 3.02
3216 6283 8.370940 ACATTTCTCTAAGATGTCAACTTGAGA 58.629 33.333 14.92 14.92 33.92 3.27
3217 6284 9.212641 CATTTCTCTAAGATGTCAACTTGAGAA 57.787 33.333 20.73 20.73 38.31 2.87
3218 6285 8.594881 TTTCTCTAAGATGTCAACTTGAGAAC 57.405 34.615 22.49 0.00 38.90 3.01
3219 6286 6.692486 TCTCTAAGATGTCAACTTGAGAACC 58.308 40.000 15.81 0.00 33.42 3.62
3220 6287 6.495181 TCTCTAAGATGTCAACTTGAGAACCT 59.505 38.462 15.81 0.00 33.42 3.50
3221 6288 6.692486 TCTAAGATGTCAACTTGAGAACCTC 58.308 40.000 5.65 0.00 0.00 3.85
3222 6289 5.559148 AAGATGTCAACTTGAGAACCTCT 57.441 39.130 0.00 0.00 0.00 3.69
3223 6290 4.892433 AGATGTCAACTTGAGAACCTCTG 58.108 43.478 0.00 0.00 0.00 3.35
3224 6291 4.346418 AGATGTCAACTTGAGAACCTCTGT 59.654 41.667 0.00 0.00 0.00 3.41
3225 6292 3.797039 TGTCAACTTGAGAACCTCTGTG 58.203 45.455 0.00 0.00 0.00 3.66
3226 6293 3.450817 TGTCAACTTGAGAACCTCTGTGA 59.549 43.478 0.00 0.00 0.00 3.58
3227 6294 4.081142 TGTCAACTTGAGAACCTCTGTGAA 60.081 41.667 0.00 0.00 0.00 3.18
3228 6295 4.271291 GTCAACTTGAGAACCTCTGTGAAC 59.729 45.833 0.00 0.00 0.00 3.18
3229 6296 4.081142 TCAACTTGAGAACCTCTGTGAACA 60.081 41.667 0.00 0.00 0.00 3.18
3230 6297 4.065321 ACTTGAGAACCTCTGTGAACAG 57.935 45.455 3.98 3.98 45.08 3.16
3231 6298 3.452627 ACTTGAGAACCTCTGTGAACAGT 59.547 43.478 10.14 0.00 44.12 3.55
3232 6299 4.080863 ACTTGAGAACCTCTGTGAACAGTT 60.081 41.667 10.14 0.00 44.12 3.16
3233 6300 5.128827 ACTTGAGAACCTCTGTGAACAGTTA 59.871 40.000 10.14 0.00 44.12 2.24
3234 6301 5.607939 TGAGAACCTCTGTGAACAGTTAA 57.392 39.130 10.14 0.00 44.12 2.01
3235 6302 5.601662 TGAGAACCTCTGTGAACAGTTAAG 58.398 41.667 10.14 1.15 44.12 1.85
3236 6303 4.381411 AGAACCTCTGTGAACAGTTAAGC 58.619 43.478 10.14 0.14 44.12 3.09
3237 6304 3.838244 ACCTCTGTGAACAGTTAAGCA 57.162 42.857 10.14 0.00 44.12 3.91
3238 6305 4.150897 ACCTCTGTGAACAGTTAAGCAA 57.849 40.909 10.14 0.00 44.12 3.91
3239 6306 4.718961 ACCTCTGTGAACAGTTAAGCAAT 58.281 39.130 10.14 0.00 44.12 3.56
3240 6307 4.516698 ACCTCTGTGAACAGTTAAGCAATG 59.483 41.667 10.14 0.00 44.12 2.82
3241 6308 4.083110 CCTCTGTGAACAGTTAAGCAATGG 60.083 45.833 10.14 0.00 44.12 3.16
3242 6309 3.253188 TCTGTGAACAGTTAAGCAATGGC 59.747 43.478 10.14 0.00 44.12 4.40
3243 6310 2.954989 TGTGAACAGTTAAGCAATGGCA 59.045 40.909 0.00 0.00 44.61 4.92
3244 6311 3.573538 TGTGAACAGTTAAGCAATGGCAT 59.426 39.130 0.00 0.00 44.61 4.40
3258 6325 2.886862 TGGCATTGGTTGTGTTCTTG 57.113 45.000 0.00 0.00 0.00 3.02
3306 6425 1.987770 CGCCAAGTGCATTTGAATGTC 59.012 47.619 22.24 5.95 41.33 3.06
3310 6429 3.985279 CCAAGTGCATTTGAATGTCACTG 59.015 43.478 22.24 17.98 44.80 3.66
3314 6433 3.983344 GTGCATTTGAATGTCACTGGTTC 59.017 43.478 16.71 0.00 38.83 3.62
3316 6435 3.256631 GCATTTGAATGTCACTGGTTCCT 59.743 43.478 5.68 0.00 38.65 3.36
3325 6444 4.160329 TGTCACTGGTTCCTCTTAGATGT 58.840 43.478 0.00 0.00 0.00 3.06
3330 6449 3.173151 TGGTTCCTCTTAGATGTCAGCA 58.827 45.455 0.00 0.00 0.00 4.41
3397 6627 9.908152 TTACAAGATATGTACTGGTCGATATTG 57.092 33.333 0.00 0.00 44.11 1.90
3494 6920 9.826574 TTACTGAAACTGTTGTATTCTGTAACT 57.173 29.630 13.66 0.00 39.94 2.24
3495 6921 8.142994 ACTGAAACTGTTGTATTCTGTAACTG 57.857 34.615 0.00 0.00 34.71 3.16
3496 6922 6.954944 TGAAACTGTTGTATTCTGTAACTGC 58.045 36.000 0.00 0.00 0.00 4.40
3497 6923 6.765989 TGAAACTGTTGTATTCTGTAACTGCT 59.234 34.615 0.00 0.00 0.00 4.24
3498 6924 6.545504 AACTGTTGTATTCTGTAACTGCTG 57.454 37.500 0.00 0.00 0.00 4.41
3499 6925 4.452455 ACTGTTGTATTCTGTAACTGCTGC 59.548 41.667 0.00 0.00 0.00 5.25
3500 6926 4.641396 TGTTGTATTCTGTAACTGCTGCT 58.359 39.130 0.00 0.00 0.00 4.24
3501 6927 5.789521 TGTTGTATTCTGTAACTGCTGCTA 58.210 37.500 0.00 0.00 0.00 3.49
3502 6928 6.227522 TGTTGTATTCTGTAACTGCTGCTAA 58.772 36.000 0.00 0.00 0.00 3.09
3503 6929 6.878923 TGTTGTATTCTGTAACTGCTGCTAAT 59.121 34.615 0.00 0.00 0.00 1.73
3504 6930 7.064609 TGTTGTATTCTGTAACTGCTGCTAATC 59.935 37.037 0.00 0.00 0.00 1.75
3505 6931 6.878317 TGTATTCTGTAACTGCTGCTAATCT 58.122 36.000 0.00 0.00 0.00 2.40
3506 6932 7.331026 TGTATTCTGTAACTGCTGCTAATCTT 58.669 34.615 0.00 0.00 0.00 2.40
3507 6933 6.917217 ATTCTGTAACTGCTGCTAATCTTC 57.083 37.500 0.00 0.00 0.00 2.87
3508 6934 5.405935 TCTGTAACTGCTGCTAATCTTCA 57.594 39.130 0.00 0.00 0.00 3.02
3509 6935 5.414360 TCTGTAACTGCTGCTAATCTTCAG 58.586 41.667 0.00 1.95 0.00 3.02
3510 6936 5.047021 TCTGTAACTGCTGCTAATCTTCAGT 60.047 40.000 0.00 0.00 39.42 3.41
3511 6937 5.551233 TGTAACTGCTGCTAATCTTCAGTT 58.449 37.500 10.22 10.22 46.09 3.16
3512 6938 5.997746 TGTAACTGCTGCTAATCTTCAGTTT 59.002 36.000 10.57 0.00 43.09 2.66
3513 6939 7.158697 TGTAACTGCTGCTAATCTTCAGTTTA 58.841 34.615 10.57 0.27 43.09 2.01
3514 6940 6.734104 AACTGCTGCTAATCTTCAGTTTAG 57.266 37.500 0.00 1.65 43.09 1.85
3515 6941 5.181748 ACTGCTGCTAATCTTCAGTTTAGG 58.818 41.667 0.00 0.00 34.69 2.69
3516 6942 5.046304 ACTGCTGCTAATCTTCAGTTTAGGA 60.046 40.000 0.00 3.72 34.69 2.94
3517 6943 5.423015 TGCTGCTAATCTTCAGTTTAGGAG 58.577 41.667 16.32 16.32 43.05 3.69
3518 6944 5.046304 TGCTGCTAATCTTCAGTTTAGGAGT 60.046 40.000 19.39 0.00 42.59 3.85
3519 6945 5.877564 GCTGCTAATCTTCAGTTTAGGAGTT 59.122 40.000 19.39 0.00 42.59 3.01
3520 6946 6.372937 GCTGCTAATCTTCAGTTTAGGAGTTT 59.627 38.462 19.39 0.00 42.59 2.66
3521 6947 7.549488 GCTGCTAATCTTCAGTTTAGGAGTTTA 59.451 37.037 19.39 0.00 42.59 2.01
3522 6948 8.773404 TGCTAATCTTCAGTTTAGGAGTTTAC 57.227 34.615 6.74 0.00 31.37 2.01
3523 6949 8.594550 TGCTAATCTTCAGTTTAGGAGTTTACT 58.405 33.333 6.74 0.00 31.37 2.24
3524 6950 8.874816 GCTAATCTTCAGTTTAGGAGTTTACTG 58.125 37.037 0.00 0.00 39.41 2.74
3545 6971 7.986085 ACTGAAACTATTGTATTCTGCAACT 57.014 32.000 0.00 0.00 0.00 3.16
3546 6972 7.810658 ACTGAAACTATTGTATTCTGCAACTG 58.189 34.615 0.00 0.00 0.00 3.16
3547 6973 6.611381 TGAAACTATTGTATTCTGCAACTGC 58.389 36.000 0.00 0.00 42.50 4.40
3548 6974 6.430925 TGAAACTATTGTATTCTGCAACTGCT 59.569 34.615 2.95 0.00 42.66 4.24
3549 6975 5.808042 ACTATTGTATTCTGCAACTGCTG 57.192 39.130 2.95 2.66 42.66 4.41
3550 6976 5.491070 ACTATTGTATTCTGCAACTGCTGA 58.509 37.500 7.14 7.14 45.22 4.26
3551 6977 6.118170 ACTATTGTATTCTGCAACTGCTGAT 58.882 36.000 11.44 5.73 45.95 2.90
3552 6978 7.275183 ACTATTGTATTCTGCAACTGCTGATA 58.725 34.615 11.44 4.60 45.95 2.15
3553 6979 7.770433 ACTATTGTATTCTGCAACTGCTGATAA 59.230 33.333 11.44 6.40 45.95 1.75
3554 6980 7.578310 ATTGTATTCTGCAACTGCTGATAAT 57.422 32.000 11.44 6.56 45.95 1.28
3555 6981 6.609237 TGTATTCTGCAACTGCTGATAATC 57.391 37.500 11.44 4.99 45.95 1.75
3556 6982 6.351711 TGTATTCTGCAACTGCTGATAATCT 58.648 36.000 11.44 0.00 45.95 2.40
3557 6983 6.825213 TGTATTCTGCAACTGCTGATAATCTT 59.175 34.615 11.44 0.00 45.95 2.40
3558 6984 5.808042 TTCTGCAACTGCTGATAATCTTC 57.192 39.130 11.44 0.00 45.95 2.87
3559 6985 4.835678 TCTGCAACTGCTGATAATCTTCA 58.164 39.130 7.14 0.00 42.71 3.02
3560 6986 4.874396 TCTGCAACTGCTGATAATCTTCAG 59.126 41.667 7.14 0.00 44.87 3.02
3561 6987 4.582869 TGCAACTGCTGATAATCTTCAGT 58.417 39.130 2.95 4.20 44.10 3.41
3562 6988 5.005740 TGCAACTGCTGATAATCTTCAGTT 58.994 37.500 2.95 9.65 45.53 3.16
3563 6989 6.172630 TGCAACTGCTGATAATCTTCAGTTA 58.827 36.000 13.30 1.61 43.59 2.24
3564 6990 6.314648 TGCAACTGCTGATAATCTTCAGTTAG 59.685 38.462 13.30 11.03 43.59 2.34
3565 6991 6.238320 GCAACTGCTGATAATCTTCAGTTAGG 60.238 42.308 13.30 6.73 43.59 2.69
3566 6992 6.798427 ACTGCTGATAATCTTCAGTTAGGA 57.202 37.500 0.00 0.00 44.10 2.94
3567 6993 6.815089 ACTGCTGATAATCTTCAGTTAGGAG 58.185 40.000 0.00 0.00 44.10 3.69
3568 6994 6.382570 ACTGCTGATAATCTTCAGTTAGGAGT 59.617 38.462 0.00 0.00 44.10 3.85
3569 6995 7.093112 ACTGCTGATAATCTTCAGTTAGGAGTT 60.093 37.037 0.00 0.00 44.10 3.01
3570 6996 7.624549 TGCTGATAATCTTCAGTTAGGAGTTT 58.375 34.615 3.65 0.00 44.10 2.66
3571 6997 7.550551 TGCTGATAATCTTCAGTTAGGAGTTTG 59.449 37.037 3.65 0.00 44.10 2.93
3572 6998 7.011857 GCTGATAATCTTCAGTTAGGAGTTTGG 59.988 40.741 3.65 0.00 44.10 3.28
3573 6999 8.146053 TGATAATCTTCAGTTAGGAGTTTGGA 57.854 34.615 0.00 0.00 0.00 3.53
3574 7000 8.260818 TGATAATCTTCAGTTAGGAGTTTGGAG 58.739 37.037 0.00 0.00 0.00 3.86
3575 7001 6.441088 AATCTTCAGTTAGGAGTTTGGAGT 57.559 37.500 0.00 0.00 0.00 3.85
3576 7002 5.888982 TCTTCAGTTAGGAGTTTGGAGTT 57.111 39.130 0.00 0.00 0.00 3.01
3577 7003 5.611374 TCTTCAGTTAGGAGTTTGGAGTTG 58.389 41.667 0.00 0.00 0.00 3.16
3578 7004 5.130477 TCTTCAGTTAGGAGTTTGGAGTTGT 59.870 40.000 0.00 0.00 0.00 3.32
3579 7005 4.957296 TCAGTTAGGAGTTTGGAGTTGTC 58.043 43.478 0.00 0.00 0.00 3.18
3580 7006 4.654262 TCAGTTAGGAGTTTGGAGTTGTCT 59.346 41.667 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.274459 GGACAATGCTATGGCTAACTTCAG 59.726 45.833 1.68 0.00 39.59 3.02
12 13 1.339055 ACTGCACACGGACAATGCTAT 60.339 47.619 0.00 0.00 40.13 2.97
18 19 1.590525 GACGACTGCACACGGACAA 60.591 57.895 11.48 0.00 0.00 3.18
101 104 3.279875 GGGCATGGATTCGTCCGC 61.280 66.667 0.00 0.00 0.00 5.54
144 150 2.125269 ATGCAGGTACGGGTTCGC 60.125 61.111 0.00 0.00 40.63 4.70
183 189 2.813901 GGAGCATCTCTCGCAGCT 59.186 61.111 0.00 0.00 42.82 4.24
190 196 1.074926 ATGGTCGGGGAGCATCTCT 60.075 57.895 4.59 0.00 45.91 3.10
283 290 4.601042 TGGCGGGCCAAAAAGTTA 57.399 50.000 10.53 0.00 44.12 2.24
373 380 2.406616 CCGCCACCCAAGATTTCGG 61.407 63.158 0.00 0.00 0.00 4.30
376 383 3.061848 CGCCGCCACCCAAGATTT 61.062 61.111 0.00 0.00 0.00 2.17
402 417 2.125225 AACCACCTCCCCTCTCCC 59.875 66.667 0.00 0.00 0.00 4.30
409 424 2.014033 TTTCCCACCAACCACCTCCC 62.014 60.000 0.00 0.00 0.00 4.30
426 441 1.412343 ACATTTCAGCCCACGCTTTTT 59.588 42.857 0.00 0.00 45.55 1.94
434 449 1.691219 GGGAGGACATTTCAGCCCA 59.309 57.895 0.00 0.00 36.87 5.36
469 484 1.346395 CCTACGGTGCCCTGCATATAA 59.654 52.381 0.00 0.00 41.91 0.98
486 501 2.689771 GTTTCCCCCTCGCCCCTA 60.690 66.667 0.00 0.00 0.00 3.53
494 509 2.261430 GAATACGCCGGTTTCCCCCT 62.261 60.000 1.90 0.00 0.00 4.79
525 540 4.536687 GGCGCGGCAAAATCTCGG 62.537 66.667 29.32 0.00 0.00 4.63
527 542 4.193334 GGGGCGCGGCAAAATCTC 62.193 66.667 34.30 14.57 0.00 2.75
529 544 4.193334 GAGGGGCGCGGCAAAATC 62.193 66.667 34.30 20.47 0.00 2.17
575 590 3.246112 CCACCCGAACAGACCCCA 61.246 66.667 0.00 0.00 0.00 4.96
591 606 1.445410 GGTTGGCGCGGAAAATTCC 60.445 57.895 8.83 1.92 44.05 3.01
592 607 1.445410 GGGTTGGCGCGGAAAATTC 60.445 57.895 8.83 0.00 0.00 2.17
593 608 2.654289 GGGTTGGCGCGGAAAATT 59.346 55.556 8.83 0.00 0.00 1.82
594 609 3.743636 CGGGTTGGCGCGGAAAAT 61.744 61.111 8.83 0.00 45.55 1.82
601 616 3.111442 CAAAATGCGGGTTGGCGC 61.111 61.111 0.00 0.00 35.06 6.53
602 617 1.732683 GTCAAAATGCGGGTTGGCG 60.733 57.895 0.00 0.00 35.06 5.69
603 618 1.732683 CGTCAAAATGCGGGTTGGC 60.733 57.895 0.00 0.00 0.00 4.52
604 619 1.080839 CCGTCAAAATGCGGGTTGG 60.081 57.895 0.00 0.00 43.85 3.77
605 620 4.550395 CCGTCAAAATGCGGGTTG 57.450 55.556 0.00 0.00 43.85 3.77
610 625 4.143431 CCACAAAATAACCGTCAAAATGCG 60.143 41.667 0.00 0.00 0.00 4.73
611 626 4.151512 CCCACAAAATAACCGTCAAAATGC 59.848 41.667 0.00 0.00 0.00 3.56
612 627 5.293560 ACCCACAAAATAACCGTCAAAATG 58.706 37.500 0.00 0.00 0.00 2.32
613 628 5.534407 GACCCACAAAATAACCGTCAAAAT 58.466 37.500 0.00 0.00 0.00 1.82
614 629 4.497674 CGACCCACAAAATAACCGTCAAAA 60.498 41.667 0.00 0.00 0.00 2.44
615 630 3.003482 CGACCCACAAAATAACCGTCAAA 59.997 43.478 0.00 0.00 0.00 2.69
616 631 2.548904 CGACCCACAAAATAACCGTCAA 59.451 45.455 0.00 0.00 0.00 3.18
617 632 2.144730 CGACCCACAAAATAACCGTCA 58.855 47.619 0.00 0.00 0.00 4.35
618 633 1.465777 CCGACCCACAAAATAACCGTC 59.534 52.381 0.00 0.00 0.00 4.79
619 634 1.525941 CCGACCCACAAAATAACCGT 58.474 50.000 0.00 0.00 0.00 4.83
620 635 0.806241 CCCGACCCACAAAATAACCG 59.194 55.000 0.00 0.00 0.00 4.44
621 636 2.203470 TCCCGACCCACAAAATAACC 57.797 50.000 0.00 0.00 0.00 2.85
622 637 4.794278 AAATCCCGACCCACAAAATAAC 57.206 40.909 0.00 0.00 0.00 1.89
623 638 5.810080 AAAAATCCCGACCCACAAAATAA 57.190 34.783 0.00 0.00 0.00 1.40
642 657 3.334583 ACTCTAGCAGATCCGCAAAAA 57.665 42.857 3.28 0.00 0.00 1.94
643 658 3.002791 CAACTCTAGCAGATCCGCAAAA 58.997 45.455 3.28 0.00 0.00 2.44
644 659 2.621338 CAACTCTAGCAGATCCGCAAA 58.379 47.619 3.28 0.00 0.00 3.68
645 660 1.740380 GCAACTCTAGCAGATCCGCAA 60.740 52.381 3.28 0.00 0.00 4.85
646 661 0.179100 GCAACTCTAGCAGATCCGCA 60.179 55.000 3.28 0.00 0.00 5.69
647 662 0.103937 AGCAACTCTAGCAGATCCGC 59.896 55.000 0.00 0.00 0.00 5.54
648 663 1.680735 AGAGCAACTCTAGCAGATCCG 59.319 52.381 0.00 0.00 39.28 4.18
649 664 4.340950 AGTTAGAGCAACTCTAGCAGATCC 59.659 45.833 17.26 0.00 44.48 3.36
650 665 5.514274 AGTTAGAGCAACTCTAGCAGATC 57.486 43.478 17.26 0.00 44.48 2.75
661 676 1.137513 ACGCAACGAGTTAGAGCAAC 58.862 50.000 0.00 0.00 37.41 4.17
662 677 1.525197 CAACGCAACGAGTTAGAGCAA 59.475 47.619 0.00 0.00 0.00 3.91
663 678 1.136690 CAACGCAACGAGTTAGAGCA 58.863 50.000 0.00 0.00 0.00 4.26
664 679 1.387084 CTCAACGCAACGAGTTAGAGC 59.613 52.381 0.00 0.00 0.00 4.09
665 680 1.387084 GCTCAACGCAACGAGTTAGAG 59.613 52.381 0.00 0.00 38.92 2.43
666 681 1.415374 GCTCAACGCAACGAGTTAGA 58.585 50.000 0.00 0.00 38.92 2.10
667 682 0.091344 CGCTCAACGCAACGAGTTAG 59.909 55.000 0.00 0.00 39.08 2.34
668 683 2.138355 CGCTCAACGCAACGAGTTA 58.862 52.632 0.00 0.00 39.08 2.24
669 684 2.928361 CGCTCAACGCAACGAGTT 59.072 55.556 0.00 0.00 39.08 3.01
679 694 5.569413 CAAAATCCCTATTGTACGCTCAAC 58.431 41.667 0.00 0.00 0.00 3.18
680 695 4.095782 GCAAAATCCCTATTGTACGCTCAA 59.904 41.667 0.00 0.00 0.00 3.02
681 696 3.625764 GCAAAATCCCTATTGTACGCTCA 59.374 43.478 0.00 0.00 0.00 4.26
682 697 3.303132 CGCAAAATCCCTATTGTACGCTC 60.303 47.826 0.00 0.00 0.00 5.03
683 698 2.612212 CGCAAAATCCCTATTGTACGCT 59.388 45.455 0.00 0.00 0.00 5.07
684 699 2.853281 GCGCAAAATCCCTATTGTACGC 60.853 50.000 0.30 0.00 34.93 4.42
685 700 2.286772 GGCGCAAAATCCCTATTGTACG 60.287 50.000 10.83 0.00 0.00 3.67
686 701 2.286772 CGGCGCAAAATCCCTATTGTAC 60.287 50.000 10.83 0.00 0.00 2.90
687 702 1.944024 CGGCGCAAAATCCCTATTGTA 59.056 47.619 10.83 0.00 0.00 2.41
688 703 0.738389 CGGCGCAAAATCCCTATTGT 59.262 50.000 10.83 0.00 0.00 2.71
689 704 0.594796 GCGGCGCAAAATCCCTATTG 60.595 55.000 29.21 0.00 0.00 1.90
690 705 1.733526 GCGGCGCAAAATCCCTATT 59.266 52.632 29.21 0.00 0.00 1.73
691 706 2.542907 CGCGGCGCAAAATCCCTAT 61.543 57.895 32.61 0.00 0.00 2.57
692 707 3.199190 CGCGGCGCAAAATCCCTA 61.199 61.111 32.61 0.00 0.00 3.53
696 711 4.398598 ACACCGCGGCGCAAAATC 62.399 61.111 32.61 0.54 0.00 2.17
697 712 4.698651 CACACCGCGGCGCAAAAT 62.699 61.111 32.61 11.46 0.00 1.82
705 720 3.124921 CCTTTAGCCACACCGCGG 61.125 66.667 26.86 26.86 0.00 6.46
706 721 1.231958 TTTCCTTTAGCCACACCGCG 61.232 55.000 0.00 0.00 0.00 6.46
707 722 0.240145 GTTTCCTTTAGCCACACCGC 59.760 55.000 0.00 0.00 0.00 5.68
708 723 1.265905 GTGTTTCCTTTAGCCACACCG 59.734 52.381 0.00 0.00 33.10 4.94
709 724 2.303175 TGTGTTTCCTTTAGCCACACC 58.697 47.619 0.00 0.00 37.53 4.16
710 725 3.568007 TGATGTGTTTCCTTTAGCCACAC 59.432 43.478 0.00 0.00 38.70 3.82
711 726 3.826524 TGATGTGTTTCCTTTAGCCACA 58.173 40.909 0.00 0.00 40.02 4.17
712 727 4.218417 ACATGATGTGTTTCCTTTAGCCAC 59.782 41.667 0.00 0.00 38.01 5.01
713 728 4.218200 CACATGATGTGTTTCCTTTAGCCA 59.782 41.667 17.08 0.00 43.08 4.75
714 729 4.737054 CACATGATGTGTTTCCTTTAGCC 58.263 43.478 17.08 0.00 43.08 3.93
727 742 1.632409 AGAAGCCCACTCACATGATGT 59.368 47.619 0.00 0.00 0.00 3.06
728 743 2.414994 AGAAGCCCACTCACATGATG 57.585 50.000 0.00 0.00 0.00 3.07
729 744 2.840038 TGTAGAAGCCCACTCACATGAT 59.160 45.455 0.00 0.00 0.00 2.45
730 745 2.256306 TGTAGAAGCCCACTCACATGA 58.744 47.619 0.00 0.00 0.00 3.07
731 746 2.768253 TGTAGAAGCCCACTCACATG 57.232 50.000 0.00 0.00 0.00 3.21
732 747 4.307032 AAATGTAGAAGCCCACTCACAT 57.693 40.909 0.00 0.00 0.00 3.21
733 748 3.788227 AAATGTAGAAGCCCACTCACA 57.212 42.857 0.00 0.00 0.00 3.58
756 771 9.279904 CTAAGACAAAACACAATACGTCAAAAA 57.720 29.630 0.00 0.00 0.00 1.94
757 772 7.911205 CCTAAGACAAAACACAATACGTCAAAA 59.089 33.333 0.00 0.00 0.00 2.44
758 773 7.411274 CCTAAGACAAAACACAATACGTCAAA 58.589 34.615 0.00 0.00 0.00 2.69
759 774 6.017770 CCCTAAGACAAAACACAATACGTCAA 60.018 38.462 0.00 0.00 0.00 3.18
760 775 5.467399 CCCTAAGACAAAACACAATACGTCA 59.533 40.000 0.00 0.00 0.00 4.35
761 776 5.467735 ACCCTAAGACAAAACACAATACGTC 59.532 40.000 0.00 0.00 0.00 4.34
762 777 5.237779 CACCCTAAGACAAAACACAATACGT 59.762 40.000 0.00 0.00 0.00 3.57
763 778 5.334569 CCACCCTAAGACAAAACACAATACG 60.335 44.000 0.00 0.00 0.00 3.06
764 779 5.766174 TCCACCCTAAGACAAAACACAATAC 59.234 40.000 0.00 0.00 0.00 1.89
765 780 5.942961 TCCACCCTAAGACAAAACACAATA 58.057 37.500 0.00 0.00 0.00 1.90
766 781 4.798882 TCCACCCTAAGACAAAACACAAT 58.201 39.130 0.00 0.00 0.00 2.71
767 782 4.237976 TCCACCCTAAGACAAAACACAA 57.762 40.909 0.00 0.00 0.00 3.33
768 783 3.935818 TCCACCCTAAGACAAAACACA 57.064 42.857 0.00 0.00 0.00 3.72
769 784 5.557866 AGTATCCACCCTAAGACAAAACAC 58.442 41.667 0.00 0.00 0.00 3.32
770 785 5.836024 AGTATCCACCCTAAGACAAAACA 57.164 39.130 0.00 0.00 0.00 2.83
771 786 6.817140 CAGTAGTATCCACCCTAAGACAAAAC 59.183 42.308 0.00 0.00 0.00 2.43
772 787 6.070424 CCAGTAGTATCCACCCTAAGACAAAA 60.070 42.308 0.00 0.00 0.00 2.44
773 788 5.424252 CCAGTAGTATCCACCCTAAGACAAA 59.576 44.000 0.00 0.00 0.00 2.83
774 789 4.960469 CCAGTAGTATCCACCCTAAGACAA 59.040 45.833 0.00 0.00 0.00 3.18
775 790 4.016851 ACCAGTAGTATCCACCCTAAGACA 60.017 45.833 0.00 0.00 0.00 3.41
776 791 4.544683 ACCAGTAGTATCCACCCTAAGAC 58.455 47.826 0.00 0.00 0.00 3.01
777 792 4.894252 ACCAGTAGTATCCACCCTAAGA 57.106 45.455 0.00 0.00 0.00 2.10
778 793 5.078256 CCTACCAGTAGTATCCACCCTAAG 58.922 50.000 4.23 0.00 0.00 2.18
779 794 4.733472 TCCTACCAGTAGTATCCACCCTAA 59.267 45.833 4.23 0.00 0.00 2.69
780 795 4.318633 TCCTACCAGTAGTATCCACCCTA 58.681 47.826 4.23 0.00 0.00 3.53
781 796 3.136896 TCCTACCAGTAGTATCCACCCT 58.863 50.000 4.23 0.00 0.00 4.34
782 797 3.117208 ACTCCTACCAGTAGTATCCACCC 60.117 52.174 4.23 0.00 0.00 4.61
783 798 3.890147 CACTCCTACCAGTAGTATCCACC 59.110 52.174 4.23 0.00 0.00 4.61
784 799 4.338682 CACACTCCTACCAGTAGTATCCAC 59.661 50.000 4.23 0.00 0.00 4.02
785 800 4.017775 ACACACTCCTACCAGTAGTATCCA 60.018 45.833 4.23 0.00 0.00 3.41
786 801 4.338682 CACACACTCCTACCAGTAGTATCC 59.661 50.000 4.23 0.00 0.00 2.59
787 802 4.338682 CCACACACTCCTACCAGTAGTATC 59.661 50.000 4.23 0.00 0.00 2.24
788 803 4.279145 CCACACACTCCTACCAGTAGTAT 58.721 47.826 4.23 0.00 0.00 2.12
789 804 3.562826 CCCACACACTCCTACCAGTAGTA 60.563 52.174 4.23 0.00 0.00 1.82
790 805 2.526432 CCACACACTCCTACCAGTAGT 58.474 52.381 4.23 0.00 0.00 2.73
791 806 1.825474 CCCACACACTCCTACCAGTAG 59.175 57.143 0.00 0.00 0.00 2.57
792 807 1.933021 CCCACACACTCCTACCAGTA 58.067 55.000 0.00 0.00 0.00 2.74
793 808 1.481056 GCCCACACACTCCTACCAGT 61.481 60.000 0.00 0.00 0.00 4.00
794 809 1.194781 AGCCCACACACTCCTACCAG 61.195 60.000 0.00 0.00 0.00 4.00
795 810 1.152118 AGCCCACACACTCCTACCA 60.152 57.895 0.00 0.00 0.00 3.25
796 811 1.296715 CAGCCCACACACTCCTACC 59.703 63.158 0.00 0.00 0.00 3.18
797 812 1.296715 CCAGCCCACACACTCCTAC 59.703 63.158 0.00 0.00 0.00 3.18
798 813 1.918293 CCCAGCCCACACACTCCTA 60.918 63.158 0.00 0.00 0.00 2.94
906 929 1.102978 CAAGGCGGGGTATTTCAAGG 58.897 55.000 0.00 0.00 0.00 3.61
910 933 1.101635 GCTCCAAGGCGGGGTATTTC 61.102 60.000 0.00 0.00 37.70 2.17
911 934 1.076995 GCTCCAAGGCGGGGTATTT 60.077 57.895 0.00 0.00 37.70 1.40
912 935 2.305607 TGCTCCAAGGCGGGGTATT 61.306 57.895 0.00 0.00 37.70 1.89
913 947 2.690881 TGCTCCAAGGCGGGGTAT 60.691 61.111 0.00 0.00 37.70 2.73
1138 2397 1.134371 GTTGCCATCTCCCTGGTAGAC 60.134 57.143 0.00 0.00 38.63 2.59
1544 2830 2.157668 CGACACCAGAGAACCAAATTCG 59.842 50.000 0.00 0.00 42.69 3.34
1545 2831 3.139077 ACGACACCAGAGAACCAAATTC 58.861 45.455 0.00 0.00 37.62 2.17
1546 2832 3.208747 ACGACACCAGAGAACCAAATT 57.791 42.857 0.00 0.00 0.00 1.82
1547 2833 2.930826 ACGACACCAGAGAACCAAAT 57.069 45.000 0.00 0.00 0.00 2.32
1548 2834 2.702592 AACGACACCAGAGAACCAAA 57.297 45.000 0.00 0.00 0.00 3.28
1549 2835 2.696707 ACTAACGACACCAGAGAACCAA 59.303 45.455 0.00 0.00 0.00 3.67
1550 2836 2.313317 ACTAACGACACCAGAGAACCA 58.687 47.619 0.00 0.00 0.00 3.67
1551 2837 3.382048 AACTAACGACACCAGAGAACC 57.618 47.619 0.00 0.00 0.00 3.62
1552 2838 3.059800 GCAAACTAACGACACCAGAGAAC 60.060 47.826 0.00 0.00 0.00 3.01
1553 2839 3.128349 GCAAACTAACGACACCAGAGAA 58.872 45.455 0.00 0.00 0.00 2.87
1554 2840 2.750948 GCAAACTAACGACACCAGAGA 58.249 47.619 0.00 0.00 0.00 3.10
1555 2841 1.455786 CGCAAACTAACGACACCAGAG 59.544 52.381 0.00 0.00 0.00 3.35
1556 2842 1.202440 ACGCAAACTAACGACACCAGA 60.202 47.619 0.00 0.00 0.00 3.86
1557 2843 1.191647 GACGCAAACTAACGACACCAG 59.808 52.381 0.00 0.00 0.00 4.00
1558 2844 1.210870 GACGCAAACTAACGACACCA 58.789 50.000 0.00 0.00 0.00 4.17
1717 3156 6.013085 CACAAAGAACCATCAAATACGTACG 58.987 40.000 15.01 15.01 0.00 3.67
1718 3157 5.793457 GCACAAAGAACCATCAAATACGTAC 59.207 40.000 0.00 0.00 0.00 3.67
1719 3158 5.703592 AGCACAAAGAACCATCAAATACGTA 59.296 36.000 0.00 0.00 0.00 3.57
1720 3159 4.518970 AGCACAAAGAACCATCAAATACGT 59.481 37.500 0.00 0.00 0.00 3.57
1998 3444 2.597805 AGGGTCTCGTCGCTGTGT 60.598 61.111 0.00 0.00 0.00 3.72
2119 3576 7.552687 ACTGTTCTTCAGACAGTTTCATTACAA 59.447 33.333 4.20 0.00 46.27 2.41
2176 3846 9.213777 AGTCCACATTCCTAACTGAAGATTATA 57.786 33.333 0.00 0.00 0.00 0.98
2279 5224 7.770897 ACAAACTGGCTTTAGATTACCATCTAG 59.229 37.037 0.00 0.00 42.04 2.43
2280 5225 7.630082 ACAAACTGGCTTTAGATTACCATCTA 58.370 34.615 0.00 0.00 40.53 1.98
2281 5226 6.485171 ACAAACTGGCTTTAGATTACCATCT 58.515 36.000 0.00 0.00 42.83 2.90
2296 5241 4.020662 TGATTTATCCCCAAACAAACTGGC 60.021 41.667 0.00 0.00 32.10 4.85
2389 5356 0.243636 GTGCCGAATGGGAAAACTGG 59.756 55.000 0.00 0.00 37.33 4.00
2438 5426 4.543590 ACTTGACTGAGTTGGGTATCTG 57.456 45.455 0.00 0.00 0.00 2.90
2756 5774 2.716017 GGTCAGGAGTCCCGCTCTG 61.716 68.421 5.25 0.00 43.62 3.35
2816 5839 6.128200 TGCAGTTCTGAATTATCATGTCACAC 60.128 38.462 3.84 0.00 34.37 3.82
2818 5841 6.426980 TGCAGTTCTGAATTATCATGTCAC 57.573 37.500 3.84 0.00 34.37 3.67
2827 5850 9.414295 CTCAATGAAAAATGCAGTTCTGAATTA 57.586 29.630 0.00 0.00 0.00 1.40
2929 5954 6.369629 TCTGAAATTTAGAACCACAAGGGAA 58.630 36.000 0.00 0.00 41.15 3.97
2955 5980 7.413988 CGCCAATGTATAATTTCTTCACACAGA 60.414 37.037 0.00 0.00 0.00 3.41
3048 6082 9.645059 CTCAAGTTGACATCTTAGAGAAATGTA 57.355 33.333 0.08 0.00 33.91 2.29
3049 6083 8.370940 TCTCAAGTTGACATCTTAGAGAAATGT 58.629 33.333 17.14 0.00 36.37 2.71
3109 6176 5.613358 AGTAGCAGCAATAACAAGAACAC 57.387 39.130 0.00 0.00 0.00 3.32
3110 6177 5.762711 TGAAGTAGCAGCAATAACAAGAACA 59.237 36.000 0.00 0.00 0.00 3.18
3111 6178 6.241207 TGAAGTAGCAGCAATAACAAGAAC 57.759 37.500 0.00 0.00 0.00 3.01
3112 6179 6.486253 CTGAAGTAGCAGCAATAACAAGAA 57.514 37.500 0.00 0.00 0.00 2.52
3132 6199 2.030893 CACTTGGCGATTCAAAAGCTGA 60.031 45.455 0.00 0.00 0.00 4.26
3133 6200 2.322161 CACTTGGCGATTCAAAAGCTG 58.678 47.619 0.00 0.00 0.00 4.24
3134 6201 1.336240 GCACTTGGCGATTCAAAAGCT 60.336 47.619 0.00 0.00 0.00 3.74
3135 6202 1.063031 GCACTTGGCGATTCAAAAGC 58.937 50.000 0.00 0.00 0.00 3.51
3146 6213 2.733026 GTGACATTCAAATGCACTTGGC 59.267 45.455 8.21 0.00 40.04 4.52
3147 6214 3.985279 CAGTGACATTCAAATGCACTTGG 59.015 43.478 20.34 12.36 44.01 3.61
3148 6215 3.985279 CCAGTGACATTCAAATGCACTTG 59.015 43.478 20.34 0.36 44.01 3.16
3149 6216 3.638160 ACCAGTGACATTCAAATGCACTT 59.362 39.130 20.34 11.21 44.01 3.16
3150 6217 3.225104 ACCAGTGACATTCAAATGCACT 58.775 40.909 18.60 18.60 45.59 4.40
3151 6218 3.648339 ACCAGTGACATTCAAATGCAC 57.352 42.857 16.00 16.00 40.48 4.57
3152 6219 3.005684 GGAACCAGTGACATTCAAATGCA 59.994 43.478 2.66 0.00 40.04 3.96
3153 6220 3.256631 AGGAACCAGTGACATTCAAATGC 59.743 43.478 2.66 0.00 40.04 3.56
3154 6221 4.763793 AGAGGAACCAGTGACATTCAAATG 59.236 41.667 1.20 1.20 42.10 2.32
3155 6222 4.990526 AGAGGAACCAGTGACATTCAAAT 58.009 39.130 0.00 0.00 0.00 2.32
3156 6223 4.437682 AGAGGAACCAGTGACATTCAAA 57.562 40.909 0.00 0.00 0.00 2.69
3157 6224 4.437682 AAGAGGAACCAGTGACATTCAA 57.562 40.909 0.00 0.00 0.00 2.69
3158 6225 4.838423 TCTAAGAGGAACCAGTGACATTCA 59.162 41.667 0.00 0.00 0.00 2.57
3159 6226 5.186021 TCTCTAAGAGGAACCAGTGACATTC 59.814 44.000 0.00 0.00 0.00 2.67
3160 6227 5.087323 TCTCTAAGAGGAACCAGTGACATT 58.913 41.667 0.00 0.00 0.00 2.71
3161 6228 4.678256 TCTCTAAGAGGAACCAGTGACAT 58.322 43.478 0.00 0.00 0.00 3.06
3162 6229 4.114015 TCTCTAAGAGGAACCAGTGACA 57.886 45.455 0.00 0.00 0.00 3.58
3163 6230 5.470047 TTTCTCTAAGAGGAACCAGTGAC 57.530 43.478 0.00 0.00 0.00 3.67
3164 6231 6.688073 AATTTCTCTAAGAGGAACCAGTGA 57.312 37.500 0.00 0.00 29.06 3.41
3165 6232 9.535878 GTATAATTTCTCTAAGAGGAACCAGTG 57.464 37.037 0.00 0.00 29.06 3.66
3166 6233 9.268282 TGTATAATTTCTCTAAGAGGAACCAGT 57.732 33.333 0.00 0.00 29.06 4.00
3189 6256 9.645059 CTCAAGTTGACATCTTAGAGAAATGTA 57.355 33.333 0.08 0.00 33.91 2.29
3190 6257 8.370940 TCTCAAGTTGACATCTTAGAGAAATGT 58.629 33.333 17.14 0.00 36.37 2.71
3191 6258 8.768957 TCTCAAGTTGACATCTTAGAGAAATG 57.231 34.615 17.14 0.00 32.29 2.32
3192 6259 9.213799 GTTCTCAAGTTGACATCTTAGAGAAAT 57.786 33.333 24.16 0.00 38.72 2.17
3193 6260 7.657761 GGTTCTCAAGTTGACATCTTAGAGAAA 59.342 37.037 24.16 15.21 38.72 2.52
3194 6261 7.015682 AGGTTCTCAAGTTGACATCTTAGAGAA 59.984 37.037 21.68 21.68 37.11 2.87
3195 6262 6.495181 AGGTTCTCAAGTTGACATCTTAGAGA 59.505 38.462 16.30 16.30 32.78 3.10
3196 6263 6.696411 AGGTTCTCAAGTTGACATCTTAGAG 58.304 40.000 0.08 13.77 0.00 2.43
3197 6264 6.495181 AGAGGTTCTCAAGTTGACATCTTAGA 59.505 38.462 0.08 0.00 32.06 2.10
3198 6265 6.589523 CAGAGGTTCTCAAGTTGACATCTTAG 59.410 42.308 0.08 0.00 32.06 2.18
3199 6266 6.042093 ACAGAGGTTCTCAAGTTGACATCTTA 59.958 38.462 0.08 0.00 32.06 2.10
3200 6267 5.163258 ACAGAGGTTCTCAAGTTGACATCTT 60.163 40.000 0.08 0.00 32.06 2.40
3201 6268 4.346418 ACAGAGGTTCTCAAGTTGACATCT 59.654 41.667 0.08 3.06 32.06 2.90
3202 6269 4.450419 CACAGAGGTTCTCAAGTTGACATC 59.550 45.833 0.08 0.57 32.06 3.06
3203 6270 4.101585 TCACAGAGGTTCTCAAGTTGACAT 59.898 41.667 0.08 0.00 32.06 3.06
3204 6271 3.450817 TCACAGAGGTTCTCAAGTTGACA 59.549 43.478 0.08 0.00 32.06 3.58
3205 6272 4.060038 TCACAGAGGTTCTCAAGTTGAC 57.940 45.455 0.08 0.00 32.06 3.18
3206 6273 4.081142 TGTTCACAGAGGTTCTCAAGTTGA 60.081 41.667 5.25 5.25 32.06 3.18
3207 6274 4.191544 TGTTCACAGAGGTTCTCAAGTTG 58.808 43.478 0.00 0.00 32.06 3.16
3208 6275 4.080863 ACTGTTCACAGAGGTTCTCAAGTT 60.081 41.667 14.00 0.00 46.59 2.66
3209 6276 3.452627 ACTGTTCACAGAGGTTCTCAAGT 59.547 43.478 14.00 0.00 46.59 3.16
3210 6277 4.065321 ACTGTTCACAGAGGTTCTCAAG 57.935 45.455 14.00 0.00 46.59 3.02
3211 6278 4.487714 AACTGTTCACAGAGGTTCTCAA 57.512 40.909 14.00 0.00 46.59 3.02
3212 6279 5.601662 CTTAACTGTTCACAGAGGTTCTCA 58.398 41.667 14.00 0.00 46.59 3.27
3213 6280 4.449405 GCTTAACTGTTCACAGAGGTTCTC 59.551 45.833 14.00 0.00 46.59 2.87
3214 6281 4.141711 TGCTTAACTGTTCACAGAGGTTCT 60.142 41.667 14.00 0.00 46.59 3.01
3215 6282 4.127171 TGCTTAACTGTTCACAGAGGTTC 58.873 43.478 14.00 1.16 46.59 3.62
3216 6283 4.150897 TGCTTAACTGTTCACAGAGGTT 57.849 40.909 14.00 1.53 46.59 3.50
3217 6284 3.838244 TGCTTAACTGTTCACAGAGGT 57.162 42.857 14.00 1.56 46.59 3.85
3218 6285 4.083110 CCATTGCTTAACTGTTCACAGAGG 60.083 45.833 14.00 2.31 46.59 3.69
3219 6286 4.614535 GCCATTGCTTAACTGTTCACAGAG 60.615 45.833 14.00 2.19 39.34 3.35
3220 6287 3.253188 GCCATTGCTTAACTGTTCACAGA 59.747 43.478 14.00 0.00 39.34 3.41
3221 6288 3.004629 TGCCATTGCTTAACTGTTCACAG 59.995 43.478 5.36 5.36 43.25 3.66
3222 6289 2.954989 TGCCATTGCTTAACTGTTCACA 59.045 40.909 0.00 0.00 38.71 3.58
3223 6290 3.641437 TGCCATTGCTTAACTGTTCAC 57.359 42.857 0.00 0.00 38.71 3.18
3224 6291 4.558178 CAATGCCATTGCTTAACTGTTCA 58.442 39.130 4.18 0.00 38.71 3.18
3225 6292 3.928375 CCAATGCCATTGCTTAACTGTTC 59.072 43.478 12.01 0.00 38.92 3.18
3226 6293 3.324556 ACCAATGCCATTGCTTAACTGTT 59.675 39.130 12.01 0.00 38.92 3.16
3227 6294 2.899256 ACCAATGCCATTGCTTAACTGT 59.101 40.909 12.01 0.00 38.92 3.55
3228 6295 3.598019 ACCAATGCCATTGCTTAACTG 57.402 42.857 12.01 0.00 38.92 3.16
3229 6296 3.324556 ACAACCAATGCCATTGCTTAACT 59.675 39.130 12.01 0.00 38.92 2.24
3230 6297 3.432933 CACAACCAATGCCATTGCTTAAC 59.567 43.478 12.01 0.00 38.92 2.01
3231 6298 3.070734 ACACAACCAATGCCATTGCTTAA 59.929 39.130 12.01 0.00 38.92 1.85
3232 6299 2.632028 ACACAACCAATGCCATTGCTTA 59.368 40.909 12.01 0.00 38.92 3.09
3233 6300 1.417145 ACACAACCAATGCCATTGCTT 59.583 42.857 12.01 1.92 38.92 3.91
3234 6301 1.050204 ACACAACCAATGCCATTGCT 58.950 45.000 12.01 0.00 38.92 3.91
3235 6302 1.799994 GAACACAACCAATGCCATTGC 59.200 47.619 12.01 0.00 38.92 3.56
3236 6303 3.389925 AGAACACAACCAATGCCATTG 57.610 42.857 10.52 10.52 39.94 2.82
3237 6304 3.134442 ACAAGAACACAACCAATGCCATT 59.866 39.130 0.00 0.00 0.00 3.16
3238 6305 2.699846 ACAAGAACACAACCAATGCCAT 59.300 40.909 0.00 0.00 0.00 4.40
3239 6306 2.106566 ACAAGAACACAACCAATGCCA 58.893 42.857 0.00 0.00 0.00 4.92
3240 6307 2.888834 ACAAGAACACAACCAATGCC 57.111 45.000 0.00 0.00 0.00 4.40
3241 6308 5.333263 GCAATAACAAGAACACAACCAATGC 60.333 40.000 0.00 0.00 0.00 3.56
3242 6309 5.984926 AGCAATAACAAGAACACAACCAATG 59.015 36.000 0.00 0.00 0.00 2.82
3243 6310 5.984926 CAGCAATAACAAGAACACAACCAAT 59.015 36.000 0.00 0.00 0.00 3.16
3244 6311 5.347342 CAGCAATAACAAGAACACAACCAA 58.653 37.500 0.00 0.00 0.00 3.67
3306 6425 4.753233 CTGACATCTAAGAGGAACCAGTG 58.247 47.826 0.00 0.00 0.00 3.66
3310 6429 3.196685 AGTGCTGACATCTAAGAGGAACC 59.803 47.826 0.00 0.00 0.00 3.62
3314 6433 2.548875 GCAGTGCTGACATCTAAGAGG 58.451 52.381 8.18 0.00 0.00 3.69
3316 6435 1.134995 CGGCAGTGCTGACATCTAAGA 60.135 52.381 19.71 0.00 38.95 2.10
3325 6444 0.463654 ACTTGAAACGGCAGTGCTGA 60.464 50.000 30.43 4.81 38.46 4.26
3330 6449 2.354821 GACTGAAACTTGAAACGGCAGT 59.645 45.455 0.00 0.00 37.78 4.40
3397 6627 4.106029 AGATCATGTCAATGCAGCAAAC 57.894 40.909 0.00 0.00 33.47 2.93
3481 6907 6.878317 AGATTAGCAGCAGTTACAGAATACA 58.122 36.000 0.00 0.00 0.00 2.29
3482 6908 7.492669 TGAAGATTAGCAGCAGTTACAGAATAC 59.507 37.037 0.00 0.00 0.00 1.89
3483 6909 7.555965 TGAAGATTAGCAGCAGTTACAGAATA 58.444 34.615 0.00 0.00 0.00 1.75
3484 6910 6.409704 TGAAGATTAGCAGCAGTTACAGAAT 58.590 36.000 0.00 0.00 0.00 2.40
3485 6911 5.793817 TGAAGATTAGCAGCAGTTACAGAA 58.206 37.500 0.00 0.00 0.00 3.02
3486 6912 5.047021 ACTGAAGATTAGCAGCAGTTACAGA 60.047 40.000 0.00 0.00 36.49 3.41
3487 6913 5.174395 ACTGAAGATTAGCAGCAGTTACAG 58.826 41.667 0.00 0.00 36.49 2.74
3488 6914 5.152623 ACTGAAGATTAGCAGCAGTTACA 57.847 39.130 0.00 0.00 36.49 2.41
3489 6915 6.487689 AAACTGAAGATTAGCAGCAGTTAC 57.512 37.500 0.00 0.00 45.84 2.50
3490 6916 6.818644 CCTAAACTGAAGATTAGCAGCAGTTA 59.181 38.462 0.00 0.00 45.84 2.24
3492 6918 5.046304 TCCTAAACTGAAGATTAGCAGCAGT 60.046 40.000 0.00 0.00 41.19 4.40
3493 6919 5.423015 TCCTAAACTGAAGATTAGCAGCAG 58.577 41.667 0.00 0.00 35.57 4.24
3494 6920 5.046304 ACTCCTAAACTGAAGATTAGCAGCA 60.046 40.000 0.00 0.00 35.57 4.41
3495 6921 5.423886 ACTCCTAAACTGAAGATTAGCAGC 58.576 41.667 2.65 0.00 35.57 5.25
3496 6922 7.913674 AAACTCCTAAACTGAAGATTAGCAG 57.086 36.000 2.65 0.58 38.10 4.24
3497 6923 8.594550 AGTAAACTCCTAAACTGAAGATTAGCA 58.405 33.333 2.65 0.00 31.51 3.49
3498 6924 8.874816 CAGTAAACTCCTAAACTGAAGATTAGC 58.125 37.037 2.65 0.00 41.47 3.09
3519 6945 9.502091 AGTTGCAGAATACAATAGTTTCAGTAA 57.498 29.630 0.00 0.00 0.00 2.24
3520 6946 8.935844 CAGTTGCAGAATACAATAGTTTCAGTA 58.064 33.333 0.00 0.00 0.00 2.74
3521 6947 7.573843 GCAGTTGCAGAATACAATAGTTTCAGT 60.574 37.037 0.00 0.00 41.59 3.41
3522 6948 6.744537 GCAGTTGCAGAATACAATAGTTTCAG 59.255 38.462 0.00 0.00 41.59 3.02
3523 6949 6.430925 AGCAGTTGCAGAATACAATAGTTTCA 59.569 34.615 6.90 0.00 45.16 2.69
3524 6950 6.744537 CAGCAGTTGCAGAATACAATAGTTTC 59.255 38.462 6.90 0.00 45.16 2.78
3525 6951 6.430925 TCAGCAGTTGCAGAATACAATAGTTT 59.569 34.615 6.90 0.00 45.16 2.66
3526 6952 5.939883 TCAGCAGTTGCAGAATACAATAGTT 59.060 36.000 6.90 0.00 45.16 2.24
3527 6953 5.491070 TCAGCAGTTGCAGAATACAATAGT 58.509 37.500 6.90 0.00 45.16 2.12
3528 6954 6.615264 ATCAGCAGTTGCAGAATACAATAG 57.385 37.500 6.90 0.00 45.16 1.73
3529 6955 8.681486 ATTATCAGCAGTTGCAGAATACAATA 57.319 30.769 6.90 0.00 45.16 1.90
3530 6956 7.501559 AGATTATCAGCAGTTGCAGAATACAAT 59.498 33.333 6.90 3.57 45.16 2.71
3531 6957 6.825213 AGATTATCAGCAGTTGCAGAATACAA 59.175 34.615 6.90 0.00 45.16 2.41
3532 6958 6.351711 AGATTATCAGCAGTTGCAGAATACA 58.648 36.000 6.90 0.00 45.16 2.29
3533 6959 6.857777 AGATTATCAGCAGTTGCAGAATAC 57.142 37.500 6.90 0.00 45.16 1.89
3534 6960 7.049754 TGAAGATTATCAGCAGTTGCAGAATA 58.950 34.615 6.90 0.00 45.16 1.75
3535 6961 5.884232 TGAAGATTATCAGCAGTTGCAGAAT 59.116 36.000 6.90 0.00 45.16 2.40
3536 6962 5.247862 TGAAGATTATCAGCAGTTGCAGAA 58.752 37.500 6.90 0.00 45.16 3.02
3537 6963 4.835678 TGAAGATTATCAGCAGTTGCAGA 58.164 39.130 6.90 4.19 45.16 4.26
3538 6964 5.158101 CTGAAGATTATCAGCAGTTGCAG 57.842 43.478 6.90 0.00 45.16 4.41
3548 6974 8.146053 TCCAAACTCCTAACTGAAGATTATCA 57.854 34.615 0.00 0.00 0.00 2.15
3549 6975 8.261522 ACTCCAAACTCCTAACTGAAGATTATC 58.738 37.037 0.00 0.00 0.00 1.75
3550 6976 8.152023 ACTCCAAACTCCTAACTGAAGATTAT 57.848 34.615 0.00 0.00 0.00 1.28
3551 6977 7.554959 ACTCCAAACTCCTAACTGAAGATTA 57.445 36.000 0.00 0.00 0.00 1.75
3552 6978 6.441088 ACTCCAAACTCCTAACTGAAGATT 57.559 37.500 0.00 0.00 0.00 2.40
3553 6979 6.183361 ACAACTCCAAACTCCTAACTGAAGAT 60.183 38.462 0.00 0.00 0.00 2.40
3554 6980 5.130477 ACAACTCCAAACTCCTAACTGAAGA 59.870 40.000 0.00 0.00 0.00 2.87
3555 6981 5.368989 ACAACTCCAAACTCCTAACTGAAG 58.631 41.667 0.00 0.00 0.00 3.02
3556 6982 5.130477 AGACAACTCCAAACTCCTAACTGAA 59.870 40.000 0.00 0.00 0.00 3.02
3557 6983 4.654262 AGACAACTCCAAACTCCTAACTGA 59.346 41.667 0.00 0.00 0.00 3.41
3558 6984 4.752101 CAGACAACTCCAAACTCCTAACTG 59.248 45.833 0.00 0.00 0.00 3.16
3559 6985 4.202367 CCAGACAACTCCAAACTCCTAACT 60.202 45.833 0.00 0.00 0.00 2.24
3560 6986 4.065789 CCAGACAACTCCAAACTCCTAAC 58.934 47.826 0.00 0.00 0.00 2.34
3561 6987 3.971305 TCCAGACAACTCCAAACTCCTAA 59.029 43.478 0.00 0.00 0.00 2.69
3562 6988 3.323979 GTCCAGACAACTCCAAACTCCTA 59.676 47.826 0.00 0.00 0.00 2.94
3563 6989 2.104963 GTCCAGACAACTCCAAACTCCT 59.895 50.000 0.00 0.00 0.00 3.69
3564 6990 2.104963 AGTCCAGACAACTCCAAACTCC 59.895 50.000 0.00 0.00 0.00 3.85
3565 6991 3.134458 CAGTCCAGACAACTCCAAACTC 58.866 50.000 0.00 0.00 0.00 3.01
3566 6992 2.505819 ACAGTCCAGACAACTCCAAACT 59.494 45.455 0.00 0.00 0.00 2.66
3567 6993 2.919228 ACAGTCCAGACAACTCCAAAC 58.081 47.619 0.00 0.00 0.00 2.93
3568 6994 3.278574 CAACAGTCCAGACAACTCCAAA 58.721 45.455 0.00 0.00 0.00 3.28
3569 6995 2.238646 ACAACAGTCCAGACAACTCCAA 59.761 45.455 0.00 0.00 0.00 3.53
3570 6996 1.837439 ACAACAGTCCAGACAACTCCA 59.163 47.619 0.00 0.00 0.00 3.86
3571 6997 2.103263 AGACAACAGTCCAGACAACTCC 59.897 50.000 0.00 0.00 32.62 3.85
3572 6998 3.126831 CAGACAACAGTCCAGACAACTC 58.873 50.000 0.00 0.00 32.62 3.01
3573 6999 2.501723 ACAGACAACAGTCCAGACAACT 59.498 45.455 0.00 0.00 32.62 3.16
3574 7000 2.906354 ACAGACAACAGTCCAGACAAC 58.094 47.619 0.00 0.00 32.62 3.32
3575 7001 4.955811 ATACAGACAACAGTCCAGACAA 57.044 40.909 0.00 0.00 32.62 3.18
3576 7002 4.955811 AATACAGACAACAGTCCAGACA 57.044 40.909 0.00 0.00 32.62 3.41
3577 7003 6.268825 TCTAATACAGACAACAGTCCAGAC 57.731 41.667 0.00 0.00 32.62 3.51
3578 7004 8.768501 ATATCTAATACAGACAACAGTCCAGA 57.231 34.615 0.00 0.00 35.62 3.86
3660 7086 3.373830 AGCTTCAGATCACCTTCTAGCT 58.626 45.455 0.00 0.00 34.37 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.