Multiple sequence alignment - TraesCS7A01G116300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G116300 chr7A 100.000 5238 0 0 1 5238 74591409 74596646 0.000000e+00 9673.0
1 TraesCS7A01G116300 chr7A 79.758 1324 162 62 904 2150 86466349 86467643 0.000000e+00 863.0
2 TraesCS7A01G116300 chr7A 78.578 1167 168 54 1046 2176 85198944 85197824 0.000000e+00 695.0
3 TraesCS7A01G116300 chr7A 90.832 469 28 10 4736 5198 70894528 70894069 9.640000e-172 614.0
4 TraesCS7A01G116300 chr7A 76.596 1269 188 61 896 2128 74856716 74857911 9.710000e-167 597.0
5 TraesCS7A01G116300 chr7A 89.565 460 46 2 2762 3219 74686817 74687276 2.720000e-162 582.0
6 TraesCS7A01G116300 chr7A 88.817 465 49 2 2762 3223 70734726 70734262 7.610000e-158 568.0
7 TraesCS7A01G116300 chr7A 90.617 405 31 3 4735 5133 74610435 74610838 9.990000e-147 531.0
8 TraesCS7A01G116300 chr7A 92.798 361 19 6 4807 5166 71118977 71118623 2.800000e-142 516.0
9 TraesCS7A01G116300 chr7A 78.195 853 107 46 896 1732 70247889 70247100 6.140000e-129 472.0
10 TraesCS7A01G116300 chr7A 78.723 752 125 24 1425 2162 74673285 74674015 2.210000e-128 470.0
11 TraesCS7A01G116300 chr7A 79.062 597 83 25 947 1523 70737209 70736635 6.410000e-99 372.0
12 TraesCS7A01G116300 chr7A 78.392 597 93 20 1104 1691 74883528 74884097 6.450000e-94 355.0
13 TraesCS7A01G116300 chr7A 78.559 555 80 21 1794 2326 70735565 70735028 3.910000e-86 329.0
14 TraesCS7A01G116300 chr7A 88.048 251 22 8 3798 4043 79551106 79551353 1.850000e-74 291.0
15 TraesCS7A01G116300 chr7A 78.313 498 60 23 3727 4202 70780991 70780520 1.440000e-70 278.0
16 TraesCS7A01G116300 chr7A 75.367 613 121 16 904 1507 78388080 78388671 8.650000e-68 268.0
17 TraesCS7A01G116300 chr7A 86.220 254 12 6 4388 4630 79543490 79543731 2.420000e-63 254.0
18 TraesCS7A01G116300 chr7A 81.639 305 50 3 1860 2164 70766601 70766303 1.130000e-61 248.0
19 TraesCS7A01G116300 chr7A 94.118 136 5 3 2425 2559 74593599 74593732 2.470000e-48 204.0
20 TraesCS7A01G116300 chr7A 94.118 136 5 3 2191 2324 74593833 74593967 2.470000e-48 204.0
21 TraesCS7A01G116300 chr7A 83.981 206 17 10 3226 3421 71120511 71120312 3.220000e-42 183.0
22 TraesCS7A01G116300 chr7A 78.968 252 38 11 3727 3973 71119960 71119719 1.950000e-34 158.0
23 TraesCS7A01G116300 chr7A 80.263 152 13 11 2431 2567 70735172 70735023 1.200000e-16 99.0
24 TraesCS7A01G116300 chr7A 77.778 144 26 5 1794 1937 70776597 70776460 3.360000e-12 84.2
25 TraesCS7A01G116300 chr7A 86.765 68 3 1 2338 2405 85197847 85197786 2.620000e-08 71.3
26 TraesCS7A01G116300 chr7A 89.286 56 4 2 1 55 707273174 707273228 9.410000e-08 69.4
27 TraesCS7A01G116300 chr7A 85.938 64 4 4 1 62 518492136 518492076 4.380000e-06 63.9
28 TraesCS7A01G116300 chr7D 93.099 1594 68 7 172 1734 68901008 68902590 0.000000e+00 2296.0
29 TraesCS7A01G116300 chr7D 83.532 1427 117 50 3228 4606 66545595 66544239 0.000000e+00 1225.0
30 TraesCS7A01G116300 chr7D 86.315 928 65 23 3231 4124 68910751 68911650 0.000000e+00 953.0
31 TraesCS7A01G116300 chr7D 87.470 830 77 11 2417 3222 68903020 68903846 0.000000e+00 931.0
32 TraesCS7A01G116300 chr7D 80.948 1160 160 43 1046 2174 85345268 85346397 0.000000e+00 861.0
33 TraesCS7A01G116300 chr7D 91.572 617 28 10 2621 3229 68909329 68909929 0.000000e+00 830.0
34 TraesCS7A01G116300 chr7D 91.103 562 24 14 1786 2323 68902604 68903163 0.000000e+00 737.0
35 TraesCS7A01G116300 chr7D 79.110 1168 165 46 1046 2176 83602574 83601449 0.000000e+00 732.0
36 TraesCS7A01G116300 chr7D 77.660 1316 192 64 896 2162 69019046 69020308 0.000000e+00 708.0
37 TraesCS7A01G116300 chr7D 91.245 514 26 10 2646 3148 66546613 66546108 0.000000e+00 682.0
38 TraesCS7A01G116300 chr7D 89.942 517 23 13 4594 5102 68913587 68914082 1.590000e-179 640.0
39 TraesCS7A01G116300 chr7D 90.196 459 44 1 2762 3219 69043538 69043996 9.710000e-167 597.0
40 TraesCS7A01G116300 chr7D 76.411 1293 189 70 896 2128 66367570 66366334 4.520000e-165 592.0
41 TraesCS7A01G116300 chr7D 95.330 364 12 2 4733 5093 68805644 68806005 1.640000e-159 573.0
42 TraesCS7A01G116300 chr7D 88.817 465 49 3 2762 3223 65937783 65937319 7.610000e-158 568.0
43 TraesCS7A01G116300 chr7D 88.008 492 43 10 4736 5213 68934809 68935298 7.610000e-158 568.0
44 TraesCS7A01G116300 chr7D 87.805 492 44 10 4736 5213 66485118 66484629 3.540000e-156 562.0
45 TraesCS7A01G116300 chr7D 78.721 907 135 37 1081 1969 66105431 66104565 2.130000e-153 553.0
46 TraesCS7A01G116300 chr7D 90.428 397 22 14 4806 5197 68923898 68924283 4.680000e-140 508.0
47 TraesCS7A01G116300 chr7D 75.035 1426 177 84 948 2326 68897448 68898741 3.640000e-136 496.0
48 TraesCS7A01G116300 chr7D 81.849 595 75 20 1081 1672 65940200 65939636 2.210000e-128 470.0
49 TraesCS7A01G116300 chr7D 84.038 426 56 9 938 1359 66517254 66516837 2.940000e-107 399.0
50 TraesCS7A01G116300 chr7D 78.800 500 73 19 1794 2277 65939557 65939075 6.590000e-79 305.0
51 TraesCS7A01G116300 chr7D 77.757 544 76 21 1794 2326 69042289 69042798 5.130000e-75 292.0
52 TraesCS7A01G116300 chr7D 80.965 373 57 10 1794 2164 66347655 66347295 3.090000e-72 283.0
53 TraesCS7A01G116300 chr7D 96.815 157 4 1 2450 2606 68906028 68906183 1.450000e-65 261.0
54 TraesCS7A01G116300 chr7D 84.733 262 30 7 3746 4004 66514435 66514181 2.420000e-63 254.0
55 TraesCS7A01G116300 chr7D 79.849 397 39 19 3727 4107 68803237 68803608 8.710000e-63 252.0
56 TraesCS7A01G116300 chr7D 81.447 318 28 14 3727 4038 66515567 66515275 1.130000e-56 231.0
57 TraesCS7A01G116300 chr7D 86.700 203 16 10 3226 3421 68922192 68922390 1.140000e-51 215.0
58 TraesCS7A01G116300 chr7D 79.573 328 23 17 4398 4706 75270959 75271261 1.490000e-45 195.0
59 TraesCS7A01G116300 chr7D 98.182 110 1 1 2215 2324 68906028 68906136 1.930000e-44 191.0
60 TraesCS7A01G116300 chr7D 89.437 142 15 0 2009 2150 66103433 66103292 4.170000e-41 180.0
61 TraesCS7A01G116300 chr7D 85.465 172 12 5 3254 3416 68803955 68804122 3.240000e-37 167.0
62 TraesCS7A01G116300 chr7D 93.220 59 4 0 3842 3900 68804543 68804601 2.600000e-13 87.9
63 TraesCS7A01G116300 chr7D 92.857 56 4 0 2431 2486 65939164 65939109 1.210000e-11 82.4
64 TraesCS7A01G116300 chr7D 89.091 55 6 0 3423 3477 68804147 68804201 9.410000e-08 69.4
65 TraesCS7A01G116300 chr7B 94.878 781 35 5 36 815 10064249 10065025 0.000000e+00 1216.0
66 TraesCS7A01G116300 chr7B 90.762 617 40 9 2623 3229 10069399 10070008 0.000000e+00 808.0
67 TraesCS7A01G116300 chr7B 90.196 561 31 8 801 1346 10067370 10067921 0.000000e+00 710.0
68 TraesCS7A01G116300 chr7B 94.545 440 23 1 1742 2180 10068689 10069128 0.000000e+00 678.0
69 TraesCS7A01G116300 chr7B 78.075 1122 181 45 1069 2176 32898492 32897422 0.000000e+00 649.0
70 TraesCS7A01G116300 chr7B 77.241 1305 170 66 904 2150 10639211 10640446 0.000000e+00 647.0
71 TraesCS7A01G116300 chr7B 88.828 546 29 13 4554 5090 10174432 10174954 4.420000e-180 641.0
72 TraesCS7A01G116300 chr7B 89.154 461 48 2 2762 3220 10895267 10895727 1.640000e-159 573.0
73 TraesCS7A01G116300 chr7B 89.013 446 26 16 2646 3076 8447191 8446754 9.990000e-147 531.0
74 TraesCS7A01G116300 chr7B 83.737 578 31 12 4329 4903 8446765 8446248 6.100000e-134 488.0
75 TraesCS7A01G116300 chr7B 91.977 349 26 1 4750 5098 10241208 10241554 6.100000e-134 488.0
76 TraesCS7A01G116300 chr7B 91.714 350 25 3 4746 5094 7728225 7727879 2.840000e-132 483.0
77 TraesCS7A01G116300 chr7B 84.661 502 53 15 3231 3718 10070823 10071314 3.670000e-131 479.0
78 TraesCS7A01G116300 chr7B 90.196 357 27 6 3888 4237 10173920 10174275 4.780000e-125 459.0
79 TraesCS7A01G116300 chr7B 91.830 306 17 4 1356 1659 10068380 10068679 2.260000e-113 420.0
80 TraesCS7A01G116300 chr7B 77.353 733 94 32 1046 1759 8448602 8447923 8.290000e-98 368.0
81 TraesCS7A01G116300 chr7B 84.556 259 28 8 3727 3980 7558796 7558545 4.050000e-61 246.0
82 TraesCS7A01G116300 chr7B 94.904 157 6 2 2419 2574 10069230 10069385 1.460000e-60 244.0
83 TraesCS7A01G116300 chr7B 97.778 135 2 1 2191 2324 10069236 10069370 1.130000e-56 231.0
84 TraesCS7A01G116300 chr7B 94.406 143 8 0 3226 3368 10173075 10173217 2.460000e-53 220.0
85 TraesCS7A01G116300 chr7B 86.341 205 13 10 5032 5233 8446243 8446051 5.320000e-50 209.0
86 TraesCS7A01G116300 chr7B 79.934 304 30 15 3824 4121 9813389 9813667 1.490000e-45 195.0
87 TraesCS7A01G116300 chr7B 84.466 206 18 11 3226 3421 10104093 10104294 1.930000e-44 191.0
88 TraesCS7A01G116300 chr7B 86.826 167 14 4 4276 4442 10174287 10174445 4.170000e-41 180.0
89 TraesCS7A01G116300 chr7B 75.567 397 64 17 1757 2133 10947199 10947582 1.170000e-36 165.0
90 TraesCS7A01G116300 chr7B 86.111 72 9 1 2416 2486 10894293 10894364 5.620000e-10 76.8
91 TraesCS7A01G116300 chr7B 84.146 82 7 2 2324 2405 32897459 32897384 2.020000e-09 75.0
92 TraesCS7A01G116300 chr7B 93.617 47 2 1 2574 2619 10062303 10062349 9.410000e-08 69.4
93 TraesCS7A01G116300 chr7B 100.000 37 0 0 2585 2621 10918461 10918497 9.410000e-08 69.4
94 TraesCS7A01G116300 chr7B 89.796 49 5 0 3429 3477 10104319 10104367 4.380000e-06 63.9
95 TraesCS7A01G116300 chr2B 85.788 1168 111 26 1046 2174 76517405 76516254 0.000000e+00 1186.0
96 TraesCS7A01G116300 chr2B 90.566 106 8 2 2193 2296 76516164 76516059 7.070000e-29 139.0
97 TraesCS7A01G116300 chr2B 89.720 107 9 2 2427 2532 76516164 76516059 9.150000e-28 135.0
98 TraesCS7A01G116300 chr2B 97.368 38 1 0 896 933 76519523 76519486 1.220000e-06 65.8
99 TraesCS7A01G116300 chrUn 77.462 1300 166 69 896 2143 84528688 84529912 0.000000e+00 660.0
100 TraesCS7A01G116300 chr3B 86.749 566 56 12 2656 3217 276882030 276882580 3.470000e-171 612.0
101 TraesCS7A01G116300 chr3B 87.778 90 11 0 3636 3725 12001975 12001886 7.170000e-19 106.0
102 TraesCS7A01G116300 chr3B 87.778 90 11 0 3636 3725 505669258 505669169 7.170000e-19 106.0
103 TraesCS7A01G116300 chr1D 85.549 173 12 7 3253 3416 486923895 486923727 9.020000e-38 169.0
104 TraesCS7A01G116300 chr1D 94.231 104 5 1 940 1042 486926555 486926452 1.950000e-34 158.0
105 TraesCS7A01G116300 chr1D 92.000 50 2 2 3429 3477 486923695 486923647 9.410000e-08 69.4
106 TraesCS7A01G116300 chr1B 94.231 104 5 1 940 1042 678116401 678116298 1.950000e-34 158.0
107 TraesCS7A01G116300 chr1B 90.000 90 9 0 3636 3725 615974488 615974577 3.310000e-22 117.0
108 TraesCS7A01G116300 chr2A 85.075 134 18 2 2193 2324 51387984 51387851 9.150000e-28 135.0
109 TraesCS7A01G116300 chr2A 81.366 161 13 9 898 1048 84748888 84749041 1.190000e-21 115.0
110 TraesCS7A01G116300 chr2A 83.471 121 17 3 2434 2552 51387977 51387858 5.550000e-20 110.0
111 TraesCS7A01G116300 chr2A 96.154 52 2 0 2570 2621 51387775 51387724 9.350000e-13 86.1
112 TraesCS7A01G116300 chr2A 91.304 46 2 2 1 45 104471713 104471757 1.570000e-05 62.1
113 TraesCS7A01G116300 chr4B 88.889 90 10 0 3636 3725 227335859 227335948 1.540000e-20 111.0
114 TraesCS7A01G116300 chr6A 87.778 90 11 0 3636 3725 174385134 174385045 7.170000e-19 106.0
115 TraesCS7A01G116300 chr6A 88.136 59 3 3 1 58 14823425 14823480 3.390000e-07 67.6
116 TraesCS7A01G116300 chr5B 90.123 81 8 0 3636 3716 606530403 606530483 7.170000e-19 106.0
117 TraesCS7A01G116300 chr4A 100.000 49 0 0 2206 2254 656493632 656493584 2.010000e-14 91.6
118 TraesCS7A01G116300 chr1A 95.745 47 1 1 1 46 258186382 258186336 2.020000e-09 75.0
119 TraesCS7A01G116300 chr4D 93.878 49 2 1 1 49 90845060 90845013 7.280000e-09 73.1
120 TraesCS7A01G116300 chr4D 83.099 71 10 2 1 69 437020746 437020676 4.380000e-06 63.9
121 TraesCS7A01G116300 chr2D 85.714 70 5 5 1 66 510286856 510286788 9.410000e-08 69.4
122 TraesCS7A01G116300 chr5A 86.885 61 4 4 1 61 98376826 98376770 1.220000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G116300 chr7A 74591409 74596646 5237 False 3360.333333 9673 96.078667 1 5238 3 chr7A.!!$F11 5237
1 TraesCS7A01G116300 chr7A 86466349 86467643 1294 False 863.000000 863 79.758000 904 2150 1 chr7A.!!$F9 1246
2 TraesCS7A01G116300 chr7A 74856716 74857911 1195 False 597.000000 597 76.596000 896 2128 1 chr7A.!!$F4 1232
3 TraesCS7A01G116300 chr7A 70247100 70247889 789 True 472.000000 472 78.195000 896 1732 1 chr7A.!!$R1 836
4 TraesCS7A01G116300 chr7A 74673285 74674015 730 False 470.000000 470 78.723000 1425 2162 1 chr7A.!!$F2 737
5 TraesCS7A01G116300 chr7A 85197786 85198944 1158 True 383.150000 695 82.671500 1046 2405 2 chr7A.!!$R8 1359
6 TraesCS7A01G116300 chr7A 74883528 74884097 569 False 355.000000 355 78.392000 1104 1691 1 chr7A.!!$F5 587
7 TraesCS7A01G116300 chr7A 70734262 70737209 2947 True 342.000000 568 81.675250 947 3223 4 chr7A.!!$R5 2276
8 TraesCS7A01G116300 chr7A 71118623 71120511 1888 True 285.666667 516 85.249000 3226 5166 3 chr7A.!!$R7 1940
9 TraesCS7A01G116300 chr7A 78388080 78388671 591 False 268.000000 268 75.367000 904 1507 1 chr7A.!!$F6 603
10 TraesCS7A01G116300 chr7D 66544239 66546613 2374 True 953.500000 1225 87.388500 2646 4606 2 chr7D.!!$R8 1960
11 TraesCS7A01G116300 chr7D 85345268 85346397 1129 False 861.000000 861 80.948000 1046 2174 1 chr7D.!!$F4 1128
12 TraesCS7A01G116300 chr7D 68897448 68914082 16634 False 815.000000 2296 89.948111 172 5102 9 chr7D.!!$F6 4930
13 TraesCS7A01G116300 chr7D 83601449 83602574 1125 True 732.000000 732 79.110000 1046 2176 1 chr7D.!!$R4 1130
14 TraesCS7A01G116300 chr7D 69019046 69020308 1262 False 708.000000 708 77.660000 896 2162 1 chr7D.!!$F2 1266
15 TraesCS7A01G116300 chr7D 66366334 66367570 1236 True 592.000000 592 76.411000 896 2128 1 chr7D.!!$R2 1232
16 TraesCS7A01G116300 chr7D 69042289 69043996 1707 False 444.500000 597 83.976500 1794 3219 2 chr7D.!!$F8 1425
17 TraesCS7A01G116300 chr7D 66103292 66105431 2139 True 366.500000 553 84.079000 1081 2150 2 chr7D.!!$R6 1069
18 TraesCS7A01G116300 chr7D 68922192 68924283 2091 False 361.500000 508 88.564000 3226 5197 2 chr7D.!!$F7 1971
19 TraesCS7A01G116300 chr7D 65937319 65940200 2881 True 356.350000 568 85.580750 1081 3223 4 chr7D.!!$R5 2142
20 TraesCS7A01G116300 chr7D 66514181 66517254 3073 True 294.666667 399 83.406000 938 4038 3 chr7D.!!$R7 3100
21 TraesCS7A01G116300 chr7D 68803237 68806005 2768 False 229.860000 573 88.591000 3254 5093 5 chr7D.!!$F5 1839
22 TraesCS7A01G116300 chr7B 10639211 10640446 1235 False 647.000000 647 77.241000 904 2150 1 chr7B.!!$F3 1246
23 TraesCS7A01G116300 chr7B 10062303 10071314 9011 False 539.488889 1216 92.574556 36 3718 9 chr7B.!!$F6 3682
24 TraesCS7A01G116300 chr7B 8446051 8448602 2551 True 399.000000 531 84.111000 1046 5233 4 chr7B.!!$R3 4187
25 TraesCS7A01G116300 chr7B 10173075 10174954 1879 False 375.000000 641 90.064000 3226 5090 4 chr7B.!!$F8 1864
26 TraesCS7A01G116300 chr7B 32897384 32898492 1108 True 362.000000 649 81.110500 1069 2405 2 chr7B.!!$R4 1336
27 TraesCS7A01G116300 chr7B 10894293 10895727 1434 False 324.900000 573 87.632500 2416 3220 2 chr7B.!!$F9 804
28 TraesCS7A01G116300 chr2B 76516059 76519523 3464 True 381.450000 1186 90.860500 896 2532 4 chr2B.!!$R1 1636
29 TraesCS7A01G116300 chrUn 84528688 84529912 1224 False 660.000000 660 77.462000 896 2143 1 chrUn.!!$F1 1247
30 TraesCS7A01G116300 chr3B 276882030 276882580 550 False 612.000000 612 86.749000 2656 3217 1 chr3B.!!$F1 561

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
160 161 0.174162 GCTTAAGCACCCAAGGCATG 59.826 55.0 22.59 0.0 41.59 4.06 F
615 4024 0.538746 GCAAGGGGAAAACCGGAGAA 60.539 55.0 9.46 0.0 41.60 2.87 F
1692 10933 0.179225 GTTGCTAACATGCGTCCGTG 60.179 55.0 0.00 0.0 35.36 4.94 F
3201 21486 0.320421 GGCCACTACTTCAGCGTTGA 60.320 55.0 0.00 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1414 9708 1.273886 GCGGAGGAAGACTTTGTCTCT 59.726 52.381 0.42 0.0 42.59 3.10 R
2274 12735 1.067565 TGATCCGACAGCAGTTCAGAC 60.068 52.381 0.00 0.0 0.00 3.51 R
3656 23339 1.067283 AGAAGACAGACAGCCGATGTG 60.067 52.381 0.00 0.0 44.17 3.21 R
5042 26834 1.073216 CGAAGCGCAAGTCGATGAGT 61.073 55.000 19.49 0.0 37.99 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 5.680619 TCTAGGGCATATTTCGTTCAATGT 58.319 37.500 0.00 0.00 0.00 2.71
43 44 5.451798 GGGCATATTTCGTTCAATGTCCAAT 60.452 40.000 8.59 0.00 42.46 3.16
45 46 5.396362 GCATATTTCGTTCAATGTCCAATCG 59.604 40.000 0.00 0.00 0.00 3.34
46 47 2.892373 TTCGTTCAATGTCCAATCGC 57.108 45.000 0.00 0.00 0.00 4.58
48 49 0.247655 CGTTCAATGTCCAATCGCCG 60.248 55.000 0.00 0.00 0.00 6.46
49 50 0.802494 GTTCAATGTCCAATCGCCGT 59.198 50.000 0.00 0.00 0.00 5.68
51 52 1.081556 TCAATGTCCAATCGCCGTCG 61.082 55.000 0.00 0.00 0.00 5.12
52 53 1.813753 AATGTCCAATCGCCGTCGG 60.814 57.895 6.99 6.99 36.13 4.79
64 65 2.671177 CCGTCGGCAGCTGAGTTTG 61.671 63.158 20.43 3.13 0.00 2.93
69 70 1.824852 TCGGCAGCTGAGTTTGATCTA 59.175 47.619 20.43 0.00 0.00 1.98
70 71 2.159184 TCGGCAGCTGAGTTTGATCTAG 60.159 50.000 20.43 0.00 0.00 2.43
72 73 1.592081 GCAGCTGAGTTTGATCTAGCG 59.408 52.381 20.43 0.00 39.27 4.26
76 77 1.929836 CTGAGTTTGATCTAGCGGCAC 59.070 52.381 1.45 0.00 0.00 5.01
78 79 2.093500 TGAGTTTGATCTAGCGGCACAT 60.093 45.455 1.45 0.00 0.00 3.21
81 82 4.513442 AGTTTGATCTAGCGGCACATTAA 58.487 39.130 1.45 0.00 0.00 1.40
82 83 4.572389 AGTTTGATCTAGCGGCACATTAAG 59.428 41.667 1.45 0.00 0.00 1.85
85 86 3.118408 TGATCTAGCGGCACATTAAGGTT 60.118 43.478 1.45 0.00 0.00 3.50
86 87 2.627945 TCTAGCGGCACATTAAGGTTG 58.372 47.619 1.45 0.00 0.00 3.77
89 90 0.885196 GCGGCACATTAAGGTTGGAA 59.115 50.000 0.00 0.00 0.00 3.53
92 93 3.800604 GCGGCACATTAAGGTTGGAAAAA 60.801 43.478 0.00 0.00 0.00 1.94
117 118 2.125673 CGTAGGCGAGGTGGTTGG 60.126 66.667 0.00 0.00 41.33 3.77
123 124 1.883084 GCGAGGTGGTTGGCTATCG 60.883 63.158 0.00 0.00 0.00 2.92
127 128 1.138266 GAGGTGGTTGGCTATCGCTTA 59.862 52.381 0.00 0.00 36.09 3.09
128 129 1.139058 AGGTGGTTGGCTATCGCTTAG 59.861 52.381 0.00 0.00 36.09 2.18
129 130 1.134491 GGTGGTTGGCTATCGCTTAGT 60.134 52.381 0.00 0.00 36.09 2.24
132 133 0.938008 GTTGGCTATCGCTTAGTGCC 59.062 55.000 0.00 0.00 43.49 5.01
134 135 1.699730 TGGCTATCGCTTAGTGCCTA 58.300 50.000 0.00 0.00 43.57 3.93
135 136 1.613925 TGGCTATCGCTTAGTGCCTAG 59.386 52.381 0.00 0.00 43.57 3.02
136 137 1.067495 GGCTATCGCTTAGTGCCTAGG 60.067 57.143 3.67 3.67 40.36 3.02
137 138 1.670380 GCTATCGCTTAGTGCCTAGGC 60.670 57.143 27.71 27.71 38.78 3.93
160 161 0.174162 GCTTAAGCACCCAAGGCATG 59.826 55.000 22.59 0.00 41.59 4.06
161 162 0.174162 CTTAAGCACCCAAGGCATGC 59.826 55.000 9.90 9.90 39.74 4.06
165 166 2.682846 CACCCAAGGCATGCCCTA 59.317 61.111 33.14 0.00 45.62 3.53
167 168 2.196776 CCCAAGGCATGCCCTAGG 59.803 66.667 33.14 28.57 45.62 3.02
257 3666 3.159213 ACAGATTGTCATGGAAAGGCA 57.841 42.857 0.00 0.00 0.00 4.75
320 3729 9.902684 ACATGATCTTGAAGAACTAGAATTGAT 57.097 29.630 15.03 0.00 34.50 2.57
335 3744 5.186198 AGAATTGATTGTAGGGTTTCTCCG 58.814 41.667 0.00 0.00 37.00 4.63
392 3801 1.583477 GCTGGCAGTGCTTCTTTCC 59.417 57.895 17.16 0.00 0.00 3.13
427 3836 5.601662 ACATCATCAAGATCGTATTCCGTT 58.398 37.500 0.00 0.00 33.72 4.44
428 3837 5.463392 ACATCATCAAGATCGTATTCCGTTG 59.537 40.000 0.00 0.00 33.72 4.10
495 3904 1.202417 CGAGCTCGAAGCCTTTCCATA 60.202 52.381 32.06 0.00 43.77 2.74
567 3976 3.396276 TCCACCTCATACCAGAAAACCAA 59.604 43.478 0.00 0.00 0.00 3.67
615 4024 0.538746 GCAAGGGGAAAACCGGAGAA 60.539 55.000 9.46 0.00 41.60 2.87
703 4112 6.128117 GGGAATTTCTTAACTCGTATTGTGCA 60.128 38.462 0.00 0.00 0.00 4.57
794 4204 2.099756 AGCTGGCAAAGAGTGAAAACAC 59.900 45.455 0.00 0.00 0.00 3.32
873 6661 0.889186 AAAACAACGAGCCGCTGGAT 60.889 50.000 9.64 0.00 0.00 3.41
1063 8860 0.612744 AACCTCCTCTTCTCTGCAGC 59.387 55.000 9.47 0.00 0.00 5.25
1064 8861 1.141449 CCTCCTCTTCTCTGCAGCG 59.859 63.158 9.47 2.08 0.00 5.18
1065 8862 1.141449 CTCCTCTTCTCTGCAGCGG 59.859 63.158 9.47 4.41 0.00 5.52
1066 8863 1.603236 CTCCTCTTCTCTGCAGCGGT 61.603 60.000 9.47 0.00 0.00 5.68
1185 9001 2.303549 GACATGGCGTCTCCCTCCAG 62.304 65.000 0.00 0.00 41.81 3.86
1692 10933 0.179225 GTTGCTAACATGCGTCCGTG 60.179 55.000 0.00 0.00 35.36 4.94
1771 11037 4.082517 GGCTCTGTTTCTTTGATTTCTCCC 60.083 45.833 0.00 0.00 0.00 4.30
1984 12441 4.680237 CAGGTGGCTCGCCGACAA 62.680 66.667 3.14 0.00 39.30 3.18
1985 12442 4.681978 AGGTGGCTCGCCGACAAC 62.682 66.667 3.14 0.00 39.28 3.32
1996 12453 2.784596 CGACAACGGCATCGCAAT 59.215 55.556 0.00 0.00 40.63 3.56
1997 12454 1.296867 CGACAACGGCATCGCAATC 60.297 57.895 0.00 0.00 40.63 2.67
2153 12614 5.221742 CCCCTCCATATCCTCAACTTCTTAC 60.222 48.000 0.00 0.00 0.00 2.34
2155 12616 6.239458 CCCTCCATATCCTCAACTTCTTACTC 60.239 46.154 0.00 0.00 0.00 2.59
2156 12617 6.553100 CCTCCATATCCTCAACTTCTTACTCT 59.447 42.308 0.00 0.00 0.00 3.24
2157 12618 7.070571 CCTCCATATCCTCAACTTCTTACTCTT 59.929 40.741 0.00 0.00 0.00 2.85
2159 12620 8.826765 TCCATATCCTCAACTTCTTACTCTTTT 58.173 33.333 0.00 0.00 0.00 2.27
2160 12621 9.103861 CCATATCCTCAACTTCTTACTCTTTTC 57.896 37.037 0.00 0.00 0.00 2.29
2161 12622 9.103861 CATATCCTCAACTTCTTACTCTTTTCC 57.896 37.037 0.00 0.00 0.00 3.13
2164 12625 7.574607 TCCTCAACTTCTTACTCTTTTCCTTT 58.425 34.615 0.00 0.00 0.00 3.11
2166 12627 8.994170 CCTCAACTTCTTACTCTTTTCCTTTAG 58.006 37.037 0.00 0.00 0.00 1.85
2168 12629 7.990886 TCAACTTCTTACTCTTTTCCTTTAGCA 59.009 33.333 0.00 0.00 0.00 3.49
2169 12630 7.971183 ACTTCTTACTCTTTTCCTTTAGCAG 57.029 36.000 0.00 0.00 0.00 4.24
2170 12631 6.937465 ACTTCTTACTCTTTTCCTTTAGCAGG 59.063 38.462 0.00 0.00 45.64 4.85
2184 12645 6.377327 CTTTAGCAGGAAACTTGTCTGAAA 57.623 37.500 0.00 0.00 40.21 2.69
2185 12646 6.959639 TTTAGCAGGAAACTTGTCTGAAAT 57.040 33.333 0.00 0.00 40.21 2.17
2186 12647 6.959639 TTAGCAGGAAACTTGTCTGAAATT 57.040 33.333 0.00 0.00 40.21 1.82
2187 12648 8.458573 TTTAGCAGGAAACTTGTCTGAAATTA 57.541 30.769 0.00 0.00 40.21 1.40
2188 12649 6.319141 AGCAGGAAACTTGTCTGAAATTAC 57.681 37.500 0.00 0.00 40.21 1.89
2189 12650 5.827797 AGCAGGAAACTTGTCTGAAATTACA 59.172 36.000 0.00 0.00 40.21 2.41
2190 12651 6.016777 AGCAGGAAACTTGTCTGAAATTACAG 60.017 38.462 0.00 0.00 40.21 2.74
2191 12652 6.145535 CAGGAAACTTGTCTGAAATTACAGC 58.854 40.000 0.00 0.00 40.21 4.40
2192 12653 5.827797 AGGAAACTTGTCTGAAATTACAGCA 59.172 36.000 0.00 0.00 37.44 4.41
2193 12654 6.016777 AGGAAACTTGTCTGAAATTACAGCAG 60.017 38.462 0.00 0.00 37.44 4.24
2194 12655 6.238759 GGAAACTTGTCTGAAATTACAGCAGT 60.239 38.462 0.00 0.00 37.75 4.40
2195 12656 5.931441 ACTTGTCTGAAATTACAGCAGTC 57.069 39.130 0.00 0.00 37.75 3.51
2196 12657 5.615289 ACTTGTCTGAAATTACAGCAGTCT 58.385 37.500 0.00 0.00 37.75 3.24
2197 12658 5.468072 ACTTGTCTGAAATTACAGCAGTCTG 59.532 40.000 0.00 0.00 45.71 3.51
2198 12659 5.213891 TGTCTGAAATTACAGCAGTCTGA 57.786 39.130 3.32 0.00 42.95 3.27
2199 12660 5.610398 TGTCTGAAATTACAGCAGTCTGAA 58.390 37.500 3.32 0.00 42.95 3.02
2200 12661 6.054941 TGTCTGAAATTACAGCAGTCTGAAA 58.945 36.000 3.32 0.00 42.95 2.69
2201 12662 6.542005 TGTCTGAAATTACAGCAGTCTGAAAA 59.458 34.615 3.32 0.00 42.95 2.29
2202 12663 7.229306 TGTCTGAAATTACAGCAGTCTGAAAAT 59.771 33.333 3.32 0.00 42.95 1.82
2203 12664 8.721478 GTCTGAAATTACAGCAGTCTGAAAATA 58.279 33.333 3.32 0.00 42.95 1.40
2204 12665 8.939929 TCTGAAATTACAGCAGTCTGAAAATAG 58.060 33.333 3.32 0.00 42.95 1.73
2205 12666 8.621532 TGAAATTACAGCAGTCTGAAAATAGT 57.378 30.769 3.32 0.00 42.95 2.12
2206 12667 9.066892 TGAAATTACAGCAGTCTGAAAATAGTT 57.933 29.630 3.32 0.00 42.95 2.24
2207 12668 9.899226 GAAATTACAGCAGTCTGAAAATAGTTT 57.101 29.630 3.32 0.00 42.95 2.66
2210 12671 9.726438 ATTACAGCAGTCTGAAAATAGTTTACT 57.274 29.630 3.32 0.00 42.95 2.24
2211 12672 7.426929 ACAGCAGTCTGAAAATAGTTTACTG 57.573 36.000 3.32 11.04 42.95 2.74
2212 12673 7.217200 ACAGCAGTCTGAAAATAGTTTACTGA 58.783 34.615 17.02 6.11 42.95 3.41
2213 12674 7.715249 ACAGCAGTCTGAAAATAGTTTACTGAA 59.285 33.333 17.02 0.00 42.95 3.02
2214 12675 8.559536 CAGCAGTCTGAAAATAGTTTACTGAAA 58.440 33.333 17.02 0.00 42.95 2.69
2215 12676 8.560374 AGCAGTCTGAAAATAGTTTACTGAAAC 58.440 33.333 17.02 4.16 44.56 2.78
2216 12677 7.803659 GCAGTCTGAAAATAGTTTACTGAAACC 59.196 37.037 17.02 1.03 45.21 3.27
2217 12678 8.009974 CAGTCTGAAAATAGTTTACTGAAACCG 58.990 37.037 10.19 0.00 45.21 4.44
2218 12679 7.172703 AGTCTGAAAATAGTTTACTGAAACCGG 59.827 37.037 0.00 0.00 45.21 5.28
2219 12680 6.993902 TCTGAAAATAGTTTACTGAAACCGGT 59.006 34.615 0.00 0.00 45.21 5.28
2220 12681 6.961576 TGAAAATAGTTTACTGAAACCGGTG 58.038 36.000 8.52 0.00 45.21 4.94
2221 12682 6.543100 TGAAAATAGTTTACTGAAACCGGTGT 59.457 34.615 8.52 0.00 45.21 4.16
2222 12683 7.714377 TGAAAATAGTTTACTGAAACCGGTGTA 59.286 33.333 8.52 2.47 45.21 2.90
2223 12684 7.662604 AAATAGTTTACTGAAACCGGTGTAG 57.337 36.000 8.52 9.80 45.21 2.74
2224 12685 4.677673 AGTTTACTGAAACCGGTGTAGT 57.322 40.909 8.52 15.55 45.21 2.73
2225 12686 4.625028 AGTTTACTGAAACCGGTGTAGTC 58.375 43.478 18.48 10.46 45.21 2.59
2226 12687 4.343239 AGTTTACTGAAACCGGTGTAGTCT 59.657 41.667 18.48 9.78 45.21 3.24
2227 12688 2.814280 ACTGAAACCGGTGTAGTCTG 57.186 50.000 8.52 10.23 0.00 3.51
2228 12689 2.313317 ACTGAAACCGGTGTAGTCTGA 58.687 47.619 8.52 0.00 0.00 3.27
2229 12690 2.696707 ACTGAAACCGGTGTAGTCTGAA 59.303 45.455 8.52 0.00 0.00 3.02
2230 12691 3.133362 ACTGAAACCGGTGTAGTCTGAAA 59.867 43.478 8.52 0.00 0.00 2.69
2231 12692 3.460103 TGAAACCGGTGTAGTCTGAAAC 58.540 45.455 8.52 0.00 0.00 2.78
2232 12693 3.133362 TGAAACCGGTGTAGTCTGAAACT 59.867 43.478 8.52 0.00 42.33 2.66
2233 12694 3.832615 AACCGGTGTAGTCTGAAACTT 57.167 42.857 8.52 0.00 39.55 2.66
2234 12695 3.832615 ACCGGTGTAGTCTGAAACTTT 57.167 42.857 6.12 0.00 39.55 2.66
2235 12696 4.146745 ACCGGTGTAGTCTGAAACTTTT 57.853 40.909 6.12 0.00 39.55 2.27
2236 12697 3.875134 ACCGGTGTAGTCTGAAACTTTTG 59.125 43.478 6.12 0.00 39.55 2.44
2237 12698 3.303791 CCGGTGTAGTCTGAAACTTTTGC 60.304 47.826 0.00 0.00 39.55 3.68
2238 12699 3.560068 CGGTGTAGTCTGAAACTTTTGCT 59.440 43.478 0.00 0.00 39.55 3.91
2239 12700 4.748102 CGGTGTAGTCTGAAACTTTTGCTA 59.252 41.667 0.00 0.00 39.55 3.49
2240 12701 5.235616 CGGTGTAGTCTGAAACTTTTGCTAA 59.764 40.000 0.00 0.00 39.55 3.09
2241 12702 6.073222 CGGTGTAGTCTGAAACTTTTGCTAAT 60.073 38.462 0.00 0.00 39.55 1.73
2242 12703 7.298854 GGTGTAGTCTGAAACTTTTGCTAATC 58.701 38.462 0.00 0.00 39.55 1.75
2243 12704 7.173390 GGTGTAGTCTGAAACTTTTGCTAATCT 59.827 37.037 0.00 0.00 39.55 2.40
2244 12705 8.012241 GTGTAGTCTGAAACTTTTGCTAATCTG 58.988 37.037 0.00 0.00 39.55 2.90
2245 12706 7.715249 TGTAGTCTGAAACTTTTGCTAATCTGT 59.285 33.333 0.00 0.00 39.55 3.41
2246 12707 7.573968 AGTCTGAAACTTTTGCTAATCTGTT 57.426 32.000 0.00 0.00 33.03 3.16
2247 12708 8.000780 AGTCTGAAACTTTTGCTAATCTGTTT 57.999 30.769 6.79 6.79 33.03 2.83
2248 12709 8.131731 AGTCTGAAACTTTTGCTAATCTGTTTC 58.868 33.333 18.07 18.07 41.76 2.78
2249 12710 7.915397 GTCTGAAACTTTTGCTAATCTGTTTCA 59.085 33.333 22.10 22.10 45.75 2.69
2251 12712 7.771183 TGAAACTTTTGCTAATCTGTTTCAGT 58.229 30.769 20.91 3.70 44.25 3.41
2252 12713 8.250332 TGAAACTTTTGCTAATCTGTTTCAGTT 58.750 29.630 20.91 8.13 44.25 3.16
2253 12714 9.730420 GAAACTTTTGCTAATCTGTTTCAGTTA 57.270 29.630 19.05 0.00 41.34 2.24
2254 12715 9.736023 AAACTTTTGCTAATCTGTTTCAGTTAG 57.264 29.630 11.16 11.16 33.07 2.34
2255 12716 7.875971 ACTTTTGCTAATCTGTTTCAGTTAGG 58.124 34.615 14.38 6.29 31.89 2.69
2256 12717 7.719633 ACTTTTGCTAATCTGTTTCAGTTAGGA 59.280 33.333 14.38 11.39 31.89 2.94
2257 12718 7.672983 TTTGCTAATCTGTTTCAGTTAGGAG 57.327 36.000 14.38 0.00 32.45 3.69
2258 12719 6.360370 TGCTAATCTGTTTCAGTTAGGAGT 57.640 37.500 14.38 0.00 31.89 3.85
2259 12720 6.769512 TGCTAATCTGTTTCAGTTAGGAGTT 58.230 36.000 14.38 0.00 31.89 3.01
2260 12721 7.903145 TGCTAATCTGTTTCAGTTAGGAGTTA 58.097 34.615 14.38 0.00 31.89 2.24
2261 12722 8.372459 TGCTAATCTGTTTCAGTTAGGAGTTAA 58.628 33.333 14.38 0.00 31.89 2.01
2262 12723 8.874816 GCTAATCTGTTTCAGTTAGGAGTTAAG 58.125 37.037 14.38 0.00 31.89 1.85
2264 12725 8.834749 AATCTGTTTCAGTTAGGAGTTAAGAC 57.165 34.615 0.00 0.00 32.61 3.01
2265 12726 7.356089 TCTGTTTCAGTTAGGAGTTAAGACA 57.644 36.000 0.00 0.00 32.61 3.41
2266 12727 7.963532 TCTGTTTCAGTTAGGAGTTAAGACAT 58.036 34.615 0.00 0.00 32.61 3.06
2267 12728 7.872993 TCTGTTTCAGTTAGGAGTTAAGACATG 59.127 37.037 0.00 0.00 32.61 3.21
2268 12729 6.934645 TGTTTCAGTTAGGAGTTAAGACATGG 59.065 38.462 0.00 0.00 0.00 3.66
2269 12730 6.928348 TTCAGTTAGGAGTTAAGACATGGA 57.072 37.500 0.00 0.00 0.00 3.41
2270 12731 6.928348 TCAGTTAGGAGTTAAGACATGGAA 57.072 37.500 0.00 0.00 0.00 3.53
2271 12732 7.311092 TCAGTTAGGAGTTAAGACATGGAAA 57.689 36.000 0.00 0.00 0.00 3.13
2272 12733 7.918076 TCAGTTAGGAGTTAAGACATGGAAAT 58.082 34.615 0.00 0.00 0.00 2.17
2273 12734 9.042450 TCAGTTAGGAGTTAAGACATGGAAATA 57.958 33.333 0.00 0.00 0.00 1.40
2274 12735 9.319143 CAGTTAGGAGTTAAGACATGGAAATAG 57.681 37.037 0.00 0.00 0.00 1.73
2275 12736 9.047947 AGTTAGGAGTTAAGACATGGAAATAGT 57.952 33.333 0.00 0.00 0.00 2.12
2276 12737 9.315525 GTTAGGAGTTAAGACATGGAAATAGTC 57.684 37.037 0.00 0.00 0.00 2.59
2277 12738 7.741554 AGGAGTTAAGACATGGAAATAGTCT 57.258 36.000 0.00 0.00 43.98 3.24
2278 12739 7.560368 AGGAGTTAAGACATGGAAATAGTCTG 58.440 38.462 0.00 0.00 41.45 3.51
2279 12740 7.400339 AGGAGTTAAGACATGGAAATAGTCTGA 59.600 37.037 0.00 0.00 41.45 3.27
2280 12741 8.041323 GGAGTTAAGACATGGAAATAGTCTGAA 58.959 37.037 0.00 0.00 41.45 3.02
2281 12742 8.779354 AGTTAAGACATGGAAATAGTCTGAAC 57.221 34.615 12.10 12.10 46.84 3.18
2282 12743 8.779354 GTTAAGACATGGAAATAGTCTGAACT 57.221 34.615 12.55 0.00 44.70 3.01
2283 12744 8.660373 GTTAAGACATGGAAATAGTCTGAACTG 58.340 37.037 12.55 0.00 44.70 3.16
2284 12745 5.181748 AGACATGGAAATAGTCTGAACTGC 58.818 41.667 0.00 0.00 40.83 4.40
2285 12746 5.046014 AGACATGGAAATAGTCTGAACTGCT 60.046 40.000 0.00 0.00 40.83 4.24
2286 12747 4.940046 ACATGGAAATAGTCTGAACTGCTG 59.060 41.667 0.00 0.00 36.92 4.41
2287 12748 4.623932 TGGAAATAGTCTGAACTGCTGT 57.376 40.909 0.00 0.00 36.92 4.40
2288 12749 4.569943 TGGAAATAGTCTGAACTGCTGTC 58.430 43.478 0.00 0.00 36.92 3.51
2289 12750 3.614616 GGAAATAGTCTGAACTGCTGTCG 59.385 47.826 0.00 0.00 36.92 4.35
2290 12751 2.949451 ATAGTCTGAACTGCTGTCGG 57.051 50.000 0.00 0.00 36.92 4.79
2291 12752 1.905637 TAGTCTGAACTGCTGTCGGA 58.094 50.000 0.00 0.00 36.92 4.55
2292 12753 1.261480 AGTCTGAACTGCTGTCGGAT 58.739 50.000 0.00 0.00 33.32 4.18
2293 12754 1.203523 AGTCTGAACTGCTGTCGGATC 59.796 52.381 0.00 0.00 33.32 3.36
2294 12755 1.067565 GTCTGAACTGCTGTCGGATCA 60.068 52.381 0.00 0.00 0.00 2.92
2295 12756 1.827344 TCTGAACTGCTGTCGGATCAT 59.173 47.619 0.00 0.00 31.24 2.45
2296 12757 3.023832 TCTGAACTGCTGTCGGATCATA 58.976 45.455 0.00 0.00 31.24 2.15
2297 12758 3.067320 TCTGAACTGCTGTCGGATCATAG 59.933 47.826 0.00 0.00 31.24 2.23
2298 12759 3.023832 TGAACTGCTGTCGGATCATAGA 58.976 45.455 0.00 0.00 0.00 1.98
2299 12760 3.181486 TGAACTGCTGTCGGATCATAGAC 60.181 47.826 0.00 7.89 37.85 2.59
2300 12761 2.379005 ACTGCTGTCGGATCATAGACA 58.621 47.619 14.38 14.38 44.11 3.41
2301 12762 2.961741 ACTGCTGTCGGATCATAGACAT 59.038 45.455 15.16 2.26 45.03 3.06
2302 12763 3.005261 ACTGCTGTCGGATCATAGACATC 59.995 47.826 15.16 12.59 45.03 3.06
2303 12764 2.958355 TGCTGTCGGATCATAGACATCA 59.042 45.455 15.16 14.45 45.03 3.07
2304 12765 3.243535 TGCTGTCGGATCATAGACATCAC 60.244 47.826 15.16 10.22 45.03 3.06
2305 12766 3.005261 GCTGTCGGATCATAGACATCACT 59.995 47.826 15.16 0.00 45.03 3.41
2306 12767 4.216472 GCTGTCGGATCATAGACATCACTA 59.784 45.833 15.16 0.00 45.03 2.74
2307 12768 5.278512 GCTGTCGGATCATAGACATCACTAA 60.279 44.000 15.16 0.00 45.03 2.24
2308 12769 6.709018 TGTCGGATCATAGACATCACTAAA 57.291 37.500 12.06 0.00 41.81 1.85
2309 12770 7.107639 TGTCGGATCATAGACATCACTAAAA 57.892 36.000 12.06 0.00 41.81 1.52
2310 12771 7.203218 TGTCGGATCATAGACATCACTAAAAG 58.797 38.462 12.06 0.00 41.81 2.27
2311 12772 7.147897 TGTCGGATCATAGACATCACTAAAAGT 60.148 37.037 12.06 0.00 41.81 2.66
2312 12773 7.707035 GTCGGATCATAGACATCACTAAAAGTT 59.293 37.037 9.43 0.00 37.34 2.66
2313 12774 7.921214 TCGGATCATAGACATCACTAAAAGTTC 59.079 37.037 0.00 0.00 0.00 3.01
2314 12775 7.169982 CGGATCATAGACATCACTAAAAGTTCC 59.830 40.741 0.00 0.00 0.00 3.62
2315 12776 8.207545 GGATCATAGACATCACTAAAAGTTCCT 58.792 37.037 0.00 0.00 0.00 3.36
2316 12777 8.954950 ATCATAGACATCACTAAAAGTTCCTG 57.045 34.615 0.00 0.00 0.00 3.86
2317 12778 8.134202 TCATAGACATCACTAAAAGTTCCTGA 57.866 34.615 0.00 0.00 0.00 3.86
2318 12779 8.762645 TCATAGACATCACTAAAAGTTCCTGAT 58.237 33.333 0.00 0.00 0.00 2.90
2319 12780 9.388506 CATAGACATCACTAAAAGTTCCTGATT 57.611 33.333 0.00 0.00 0.00 2.57
2320 12781 7.913674 AGACATCACTAAAAGTTCCTGATTC 57.086 36.000 0.00 0.00 0.00 2.52
2321 12782 7.453393 AGACATCACTAAAAGTTCCTGATTCA 58.547 34.615 0.00 0.00 0.00 2.57
2322 12783 7.939039 AGACATCACTAAAAGTTCCTGATTCAA 59.061 33.333 0.00 0.00 0.00 2.69
2323 12784 8.463930 ACATCACTAAAAGTTCCTGATTCAAA 57.536 30.769 0.00 0.00 0.00 2.69
2324 12785 9.082313 ACATCACTAAAAGTTCCTGATTCAAAT 57.918 29.630 0.00 0.00 0.00 2.32
2325 12786 9.565213 CATCACTAAAAGTTCCTGATTCAAATC 57.435 33.333 0.00 0.00 35.97 2.17
2326 12787 8.110860 TCACTAAAAGTTCCTGATTCAAATCC 57.889 34.615 0.48 0.00 34.50 3.01
2327 12788 7.944554 TCACTAAAAGTTCCTGATTCAAATCCT 59.055 33.333 0.48 0.00 34.50 3.24
2328 12789 8.239998 CACTAAAAGTTCCTGATTCAAATCCTC 58.760 37.037 0.48 0.00 34.50 3.71
2329 12790 7.944554 ACTAAAAGTTCCTGATTCAAATCCTCA 59.055 33.333 0.48 0.00 34.50 3.86
2330 12791 7.601705 AAAAGTTCCTGATTCAAATCCTCAA 57.398 32.000 0.48 0.00 34.50 3.02
2331 12792 6.581171 AAGTTCCTGATTCAAATCCTCAAC 57.419 37.500 0.48 1.44 34.50 3.18
2332 12793 5.885465 AGTTCCTGATTCAAATCCTCAACT 58.115 37.500 0.48 3.36 34.50 3.16
2333 12794 6.310149 AGTTCCTGATTCAAATCCTCAACTT 58.690 36.000 0.48 0.00 34.50 2.66
2334 12795 6.432472 AGTTCCTGATTCAAATCCTCAACTTC 59.568 38.462 0.48 0.00 34.50 3.01
2335 12796 6.131972 TCCTGATTCAAATCCTCAACTTCT 57.868 37.500 0.48 0.00 34.50 2.85
2336 12797 6.546484 TCCTGATTCAAATCCTCAACTTCTT 58.454 36.000 0.48 0.00 34.50 2.52
2369 12898 2.991250 TGGCAGGAAACTCTTCATAGC 58.009 47.619 0.00 0.00 40.21 2.97
2405 12938 6.001460 TCTTGAACTTGTCCGGATATTTTGT 58.999 36.000 7.81 0.00 0.00 2.83
2406 12939 7.118680 GTCTTGAACTTGTCCGGATATTTTGTA 59.881 37.037 7.81 0.00 0.00 2.41
2407 12940 6.978343 TGAACTTGTCCGGATATTTTGTAG 57.022 37.500 7.81 0.00 0.00 2.74
2409 12942 7.613585 TGAACTTGTCCGGATATTTTGTAGTA 58.386 34.615 7.81 0.00 0.00 1.82
2410 12943 7.546667 TGAACTTGTCCGGATATTTTGTAGTAC 59.453 37.037 7.81 0.00 0.00 2.73
2413 12946 6.691754 TGTCCGGATATTTTGTAGTACGTA 57.308 37.500 7.81 0.00 0.00 3.57
2414 12947 7.094508 TGTCCGGATATTTTGTAGTACGTAA 57.905 36.000 7.81 0.00 0.00 3.18
2417 12950 9.334693 GTCCGGATATTTTGTAGTACGTAATAG 57.665 37.037 7.81 0.00 0.00 1.73
2429 12990 9.161629 TGTAGTACGTAATAGTAGTTTGCAGTA 57.838 33.333 2.44 0.00 32.91 2.74
2475 13038 5.333111 CGGTGTAGTCTGAAACTTTTGCTAC 60.333 44.000 0.00 0.00 39.55 3.58
2502 16046 6.223852 TGTTTCAGTTAGGAGCTAAGACTTG 58.776 40.000 0.00 0.00 0.00 3.16
2625 20057 5.915758 GCTTTGATTCAGATGATTCATCAGC 59.084 40.000 24.71 18.19 42.72 4.26
2737 20541 5.260027 ACTGTAATTGTTTCGAGTAACGC 57.740 39.130 0.00 0.00 42.26 4.84
2771 20990 1.064758 AGGTTCTGTTCCACAGCACAA 60.065 47.619 8.60 0.00 42.77 3.33
2806 21063 5.012664 TGAGGTTTTGTACATCAGCTTCCTA 59.987 40.000 0.00 0.00 42.21 2.94
2843 21108 2.999331 ACTTGTTGCAGTACCTGTGTT 58.001 42.857 0.00 0.00 33.43 3.32
2933 21198 4.994217 TGTCGATGCAGAGTAGAGAGATAG 59.006 45.833 0.00 0.00 0.00 2.08
3125 21409 2.107950 TGGCCATCACGGTTCTAAAG 57.892 50.000 0.00 0.00 36.97 1.85
3166 21450 5.237815 CAATGGTGCAGTGACTTTAGTCTA 58.762 41.667 10.92 0.00 44.99 2.59
3201 21486 0.320421 GGCCACTACTTCAGCGTTGA 60.320 55.000 0.00 0.00 0.00 3.18
3229 21514 3.614616 GCATTTCTCTTAGGTGTCGACAG 59.385 47.826 20.73 6.98 0.00 3.51
3240 21525 2.735134 GGTGTCGACAGTGTAATGAACC 59.265 50.000 20.73 8.66 0.00 3.62
3242 21527 3.428870 GTGTCGACAGTGTAATGAACCTG 59.571 47.826 20.73 0.00 34.42 4.00
3247 21532 2.371841 ACAGTGTAATGAACCTGCCTGA 59.628 45.455 0.00 0.00 32.60 3.86
3248 21533 3.181445 ACAGTGTAATGAACCTGCCTGAA 60.181 43.478 0.00 0.00 32.60 3.02
3249 21534 3.438087 CAGTGTAATGAACCTGCCTGAAG 59.562 47.826 0.00 0.00 0.00 3.02
3251 21536 4.072131 GTGTAATGAACCTGCCTGAAGAA 58.928 43.478 0.00 0.00 0.00 2.52
3252 21537 4.072131 TGTAATGAACCTGCCTGAAGAAC 58.928 43.478 0.00 0.00 0.00 3.01
3253 21538 2.957402 ATGAACCTGCCTGAAGAACA 57.043 45.000 0.00 0.00 0.00 3.18
3254 21539 2.260844 TGAACCTGCCTGAAGAACAG 57.739 50.000 0.00 0.00 45.36 3.16
3300 22605 3.063510 ACTGCTGCTAATCTGCTTCAA 57.936 42.857 0.00 0.00 39.95 2.69
3401 22747 7.982354 GCTTTAGTTGTACAGATGATAGAAGGT 59.018 37.037 0.00 0.00 0.00 3.50
3515 22953 5.485708 AGCATACTCTAGAACTTGGAAACCT 59.514 40.000 0.00 0.00 0.00 3.50
3521 22959 8.208575 ACTCTAGAACTTGGAAACCTAAATCT 57.791 34.615 0.00 0.00 0.00 2.40
3545 22991 6.491394 TGTCAAGTTTCTGTTTGATTTACCG 58.509 36.000 0.00 0.00 35.91 4.02
3546 22992 5.398416 GTCAAGTTTCTGTTTGATTTACCGC 59.602 40.000 0.00 0.00 35.91 5.68
3549 22995 5.897050 AGTTTCTGTTTGATTTACCGCAAA 58.103 33.333 0.00 0.00 0.00 3.68
3579 23200 4.921470 TTCTGTTTGATTAGCGTACTGC 57.079 40.909 2.08 2.08 46.98 4.40
3656 23339 5.234972 CCAAATTCAGTTTTTCAGGTTCTGC 59.765 40.000 0.00 0.00 0.00 4.26
3661 23344 4.036734 TCAGTTTTTCAGGTTCTGCACATC 59.963 41.667 0.00 0.00 0.00 3.06
3709 23412 3.558418 TGCAAAACAGTTCTCTAACGGTC 59.442 43.478 0.00 0.00 42.21 4.79
3718 23429 4.097437 AGTTCTCTAACGGTCGCATTATCA 59.903 41.667 0.00 0.00 40.73 2.15
3725 23436 1.588404 CGGTCGCATTATCAGTGACAC 59.412 52.381 0.00 0.00 45.70 3.67
3734 23445 5.691754 GCATTATCAGTGACACGACATGATA 59.308 40.000 0.00 9.89 32.99 2.15
3776 23487 1.810151 GCTAATTCAGCCAACACCGAA 59.190 47.619 0.00 0.00 45.23 4.30
3796 23507 2.106332 GCGGTACCGGGATGTCAG 59.894 66.667 33.98 4.83 40.19 3.51
3816 23527 6.094742 TGTCAGTGCAGAGTAGAGAAAGATAG 59.905 42.308 0.00 0.00 0.00 2.08
3839 23551 3.063084 GGACTCCTGACGGTCGCT 61.063 66.667 3.34 0.00 33.70 4.93
3840 23552 2.486042 GACTCCTGACGGTCGCTC 59.514 66.667 3.34 0.00 0.00 5.03
3871 23583 1.664649 CTTCAGAAGTGTCGCCGCA 60.665 57.895 1.48 0.00 0.00 5.69
3921 23686 8.944029 CAGAATATTTTGCACTGAGATATAGGG 58.056 37.037 0.00 0.00 0.00 3.53
3922 23687 8.664079 AGAATATTTTGCACTGAGATATAGGGT 58.336 33.333 0.00 0.00 0.00 4.34
3923 23688 9.944376 GAATATTTTGCACTGAGATATAGGGTA 57.056 33.333 0.00 0.00 0.00 3.69
3924 23689 9.950496 AATATTTTGCACTGAGATATAGGGTAG 57.050 33.333 0.00 0.00 0.00 3.18
4043 23822 9.052759 GTTCTAAACTTCAGAACCTGTATGAAA 57.947 33.333 4.27 0.00 43.98 2.69
4101 23943 3.521560 TCTTATTGTGGCTGCTACTTCG 58.478 45.455 17.13 2.18 0.00 3.79
4109 24046 1.702299 CTGCTACTTCGGCGTTTCG 59.298 57.895 6.85 0.00 0.00 3.46
4126 24063 2.396590 TCGGGGTGCATTTCTCTTAC 57.603 50.000 0.00 0.00 0.00 2.34
4164 24101 3.066203 CGGTGGTTCTTGCAGTTAGTTTT 59.934 43.478 0.00 0.00 0.00 2.43
4184 24121 2.235891 TGCAGTCCACTCGAGTTTAGA 58.764 47.619 17.26 10.47 0.00 2.10
4190 24185 1.920574 CCACTCGAGTTTAGATGTGCG 59.079 52.381 17.26 0.00 0.00 5.34
4206 24201 2.111756 GTGCGCTTTCAAGTTTCAGTG 58.888 47.619 9.73 0.00 0.00 3.66
4270 24274 7.045725 GTTCTGATTTCTGAACATGCAAATG 57.954 36.000 19.39 0.00 46.98 2.32
4271 24275 6.335471 TCTGATTTCTGAACATGCAAATGT 57.665 33.333 0.00 0.00 36.10 2.71
4377 24457 8.396272 AGTTTCTGCACATTACATTAGTTTCT 57.604 30.769 0.00 0.00 0.00 2.52
4380 24460 7.834068 TCTGCACATTACATTAGTTTCTCTC 57.166 36.000 0.00 0.00 0.00 3.20
4381 24461 7.386059 TCTGCACATTACATTAGTTTCTCTCA 58.614 34.615 0.00 0.00 0.00 3.27
4382 24462 7.877612 TCTGCACATTACATTAGTTTCTCTCAA 59.122 33.333 0.00 0.00 0.00 3.02
4410 24839 8.837389 CACATGATCAGAACTCATCAATTACAT 58.163 33.333 0.00 0.00 32.76 2.29
4457 24886 5.931146 GGACTAGATGCTCCAATCAATACAG 59.069 44.000 0.00 0.00 0.00 2.74
4458 24887 6.463614 GGACTAGATGCTCCAATCAATACAGT 60.464 42.308 0.00 0.00 0.00 3.55
4545 24985 1.528586 CGATCGATCCATGAAAGCCAC 59.471 52.381 19.51 0.00 0.00 5.01
4546 24986 1.876156 GATCGATCCATGAAAGCCACC 59.124 52.381 14.76 0.00 0.00 4.61
4547 24987 0.911769 TCGATCCATGAAAGCCACCT 59.088 50.000 0.00 0.00 0.00 4.00
4548 24988 2.115427 TCGATCCATGAAAGCCACCTA 58.885 47.619 0.00 0.00 0.00 3.08
4549 24989 2.103094 TCGATCCATGAAAGCCACCTAG 59.897 50.000 0.00 0.00 0.00 3.02
4589 25029 5.674525 TCAGAAGTTCACAACTCATCAGTT 58.325 37.500 5.50 0.00 44.26 3.16
4633 26388 1.900486 GTAGCAACAGGTCTACAGGGT 59.100 52.381 0.00 0.00 36.19 4.34
4650 26405 3.941483 CAGGGTAACAGCCTTACATTCAG 59.059 47.826 0.00 0.00 45.25 3.02
4832 26621 1.228398 TTGGTTGGCCATCTCGCAA 60.228 52.632 6.09 2.89 45.56 4.85
5042 26834 1.078214 CCGCTGAGCCATCTTGGAA 60.078 57.895 0.00 0.00 40.96 3.53
5128 26922 1.616865 ACAACTTGCTGCTACGTAGGA 59.383 47.619 23.47 20.03 0.00 2.94
5130 26924 1.254026 ACTTGCTGCTACGTAGGACA 58.746 50.000 23.47 17.37 0.00 4.02
5131 26925 1.202582 ACTTGCTGCTACGTAGGACAG 59.797 52.381 23.47 21.43 0.00 3.51
5132 26926 1.472878 CTTGCTGCTACGTAGGACAGA 59.527 52.381 25.40 12.98 31.67 3.41
5133 26927 0.809385 TGCTGCTACGTAGGACAGAC 59.191 55.000 25.40 18.59 31.67 3.51
5134 26928 0.809385 GCTGCTACGTAGGACAGACA 59.191 55.000 25.40 13.80 31.67 3.41
5148 26942 1.202651 ACAGACAGTGTGTTGGTAGGC 60.203 52.381 0.00 0.00 38.28 3.93
5153 26947 1.608590 CAGTGTGTTGGTAGGCAAAGG 59.391 52.381 0.00 0.00 0.00 3.11
5166 26960 2.912025 AAAGGGTTGGGCGTGCTG 60.912 61.111 0.00 0.00 0.00 4.41
5197 26991 0.324368 ATGTGCCTACTCCGACTCCA 60.324 55.000 0.00 0.00 0.00 3.86
5207 27001 0.681564 TCCGACTCCAGCTCCTCTTC 60.682 60.000 0.00 0.00 0.00 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.632145 GGACATTGAACGAAATATGCCCT 59.368 43.478 0.00 0.00 0.00 5.19
21 22 5.396362 CGATTGGACATTGAACGAAATATGC 59.604 40.000 0.00 0.00 0.00 3.14
23 24 5.505654 GGCGATTGGACATTGAACGAAATAT 60.506 40.000 0.00 0.00 0.00 1.28
25 26 3.427503 GGCGATTGGACATTGAACGAAAT 60.428 43.478 0.00 0.00 0.00 2.17
26 27 2.095466 GGCGATTGGACATTGAACGAAA 60.095 45.455 0.00 0.00 0.00 3.46
28 29 1.083489 GGCGATTGGACATTGAACGA 58.917 50.000 0.00 0.00 0.00 3.85
33 34 1.348250 CGACGGCGATTGGACATTG 59.652 57.895 16.62 0.00 40.82 2.82
46 47 2.357517 AAACTCAGCTGCCGACGG 60.358 61.111 10.29 10.29 0.00 4.79
48 49 0.723981 GATCAAACTCAGCTGCCGAC 59.276 55.000 9.47 0.00 0.00 4.79
49 50 0.610174 AGATCAAACTCAGCTGCCGA 59.390 50.000 9.47 0.73 0.00 5.54
51 52 1.939255 GCTAGATCAAACTCAGCTGCC 59.061 52.381 9.47 0.00 0.00 4.85
52 53 1.592081 CGCTAGATCAAACTCAGCTGC 59.408 52.381 9.47 0.00 0.00 5.25
53 54 2.200067 CCGCTAGATCAAACTCAGCTG 58.800 52.381 7.63 7.63 0.00 4.24
54 55 1.472376 GCCGCTAGATCAAACTCAGCT 60.472 52.381 0.00 0.00 0.00 4.24
55 56 0.933796 GCCGCTAGATCAAACTCAGC 59.066 55.000 0.00 0.00 0.00 4.26
58 59 2.010145 TGTGCCGCTAGATCAAACTC 57.990 50.000 0.00 0.00 0.00 3.01
60 61 4.260784 CCTTAATGTGCCGCTAGATCAAAC 60.261 45.833 0.00 0.00 0.00 2.93
61 62 3.876914 CCTTAATGTGCCGCTAGATCAAA 59.123 43.478 0.00 0.00 0.00 2.69
62 63 3.118408 ACCTTAATGTGCCGCTAGATCAA 60.118 43.478 0.00 0.00 0.00 2.57
64 65 3.113260 ACCTTAATGTGCCGCTAGATC 57.887 47.619 0.00 0.00 0.00 2.75
69 70 0.037590 TCCAACCTTAATGTGCCGCT 59.962 50.000 0.00 0.00 0.00 5.52
70 71 0.885196 TTCCAACCTTAATGTGCCGC 59.115 50.000 0.00 0.00 0.00 6.53
89 90 2.483188 CCTCGCCTACGCCTATCTTTTT 60.483 50.000 0.00 0.00 39.84 1.94
92 93 0.467659 ACCTCGCCTACGCCTATCTT 60.468 55.000 0.00 0.00 39.84 2.40
95 96 2.201022 CCACCTCGCCTACGCCTAT 61.201 63.158 0.00 0.00 39.84 2.57
99 100 2.813908 CAACCACCTCGCCTACGC 60.814 66.667 0.00 0.00 39.84 4.42
101 102 1.610554 TAGCCAACCACCTCGCCTAC 61.611 60.000 0.00 0.00 0.00 3.18
102 103 0.689745 ATAGCCAACCACCTCGCCTA 60.690 55.000 0.00 0.00 0.00 3.93
103 104 1.972660 GATAGCCAACCACCTCGCCT 61.973 60.000 0.00 0.00 0.00 5.52
106 107 4.420143 CGATAGCCAACCACCTCG 57.580 61.111 0.00 0.00 0.00 4.63
127 128 3.267210 GCTTAAGCATTGCCTAGGCACT 61.267 50.000 36.11 28.04 45.49 4.40
128 129 1.066152 GCTTAAGCATTGCCTAGGCAC 59.934 52.381 36.11 24.04 45.49 5.01
129 130 1.392589 GCTTAAGCATTGCCTAGGCA 58.607 50.000 32.88 32.88 44.74 4.75
141 142 0.174162 CATGCCTTGGGTGCTTAAGC 59.826 55.000 20.84 20.84 42.50 3.09
144 145 1.682005 GGCATGCCTTGGGTGCTTA 60.682 57.895 29.98 0.00 38.83 3.09
145 146 2.999063 GGCATGCCTTGGGTGCTT 60.999 61.111 29.98 0.00 38.83 3.91
147 148 3.660422 TAGGGCATGCCTTGGGTGC 62.660 63.158 34.70 17.14 38.12 5.01
161 162 1.901591 TAATACTCGACCGCCTAGGG 58.098 55.000 11.72 0.14 46.96 3.53
165 166 2.029623 ACACATAATACTCGACCGCCT 58.970 47.619 0.00 0.00 0.00 5.52
167 168 2.124903 CCACACATAATACTCGACCGC 58.875 52.381 0.00 0.00 0.00 5.68
171 172 5.753438 GCTTCAATCCACACATAATACTCGA 59.247 40.000 0.00 0.00 0.00 4.04
174 175 7.944729 AAAGCTTCAATCCACACATAATACT 57.055 32.000 0.00 0.00 0.00 2.12
175 176 8.986477 AAAAAGCTTCAATCCACACATAATAC 57.014 30.769 0.00 0.00 0.00 1.89
257 3666 7.315890 GTTCTTGCTTAAGAGGTGCAAATAAT 58.684 34.615 6.67 0.00 44.49 1.28
320 3729 4.379652 GTTTACACGGAGAAACCCTACAA 58.620 43.478 0.00 0.00 34.64 2.41
335 3744 3.881220 TGGCCATAGCTAAGGTTTACAC 58.119 45.455 16.08 0.00 39.73 2.90
427 3836 0.184692 TGATGCAGTGGTTGGGTTCA 59.815 50.000 0.00 0.00 0.00 3.18
428 3837 1.203052 CATGATGCAGTGGTTGGGTTC 59.797 52.381 0.00 0.00 0.00 3.62
438 3847 0.038599 TGTTGAGGCCATGATGCAGT 59.961 50.000 5.01 0.00 0.00 4.40
495 3904 0.469917 CGGGCTAGGGAACATCATGT 59.530 55.000 0.00 0.00 0.00 3.21
567 3976 0.106918 TCAAACTGCCCGGTCTTGTT 60.107 50.000 0.00 0.00 0.00 2.83
650 4059 1.192803 GGGTTCCAGTTCCTCTCGGT 61.193 60.000 0.00 0.00 0.00 4.69
703 4112 2.915659 TCTTCGTCCAGGTGCCGT 60.916 61.111 0.00 0.00 0.00 5.68
836 6604 7.061673 CGTTGTTTTCTCATTTTCTCAACAACA 59.938 33.333 19.46 0.00 46.67 3.33
837 6605 7.272515 TCGTTGTTTTCTCATTTTCTCAACAAC 59.727 33.333 12.76 12.76 44.55 3.32
838 6606 7.309177 TCGTTGTTTTCTCATTTTCTCAACAA 58.691 30.769 0.00 0.00 35.26 2.83
839 6607 6.847400 TCGTTGTTTTCTCATTTTCTCAACA 58.153 32.000 0.00 0.00 35.26 3.33
873 6661 0.391927 CGTTGGGCTACGGAATTCCA 60.392 55.000 24.09 4.80 37.86 3.53
1063 8860 2.944557 CGTGTGCTCGATCGACCG 60.945 66.667 15.15 6.88 0.00 4.79
1064 8861 3.248171 GCGTGTGCTCGATCGACC 61.248 66.667 15.15 8.81 38.39 4.79
1065 8862 3.598562 CGCGTGTGCTCGATCGAC 61.599 66.667 15.15 11.86 39.65 4.20
1066 8863 3.795342 TCGCGTGTGCTCGATCGA 61.795 61.111 18.32 18.32 39.65 3.59
1254 9097 2.587247 GCTGTGGAGGAGCAGGTGA 61.587 63.158 0.00 0.00 36.40 4.02
1414 9708 1.273886 GCGGAGGAAGACTTTGTCTCT 59.726 52.381 0.42 0.00 42.59 3.10
1771 11037 2.119457 TCGAGAATGCGATCACGAATG 58.881 47.619 8.24 0.00 39.01 2.67
1980 12437 1.296867 CGATTGCGATGCCGTTGTC 60.297 57.895 0.00 0.00 40.82 3.18
1981 12438 2.032634 ACGATTGCGATGCCGTTGT 61.033 52.632 0.00 0.00 41.64 3.32
1982 12439 1.580893 CACGATTGCGATGCCGTTG 60.581 57.895 0.00 0.00 41.64 4.10
1983 12440 2.749865 CCACGATTGCGATGCCGTT 61.750 57.895 0.00 0.00 41.64 4.44
1984 12441 3.195002 CCACGATTGCGATGCCGT 61.195 61.111 0.00 0.00 41.64 5.68
1985 12442 2.889988 TCCACGATTGCGATGCCG 60.890 61.111 0.00 0.00 41.64 5.69
1986 12443 2.709475 GTCCACGATTGCGATGCC 59.291 61.111 0.00 0.00 41.64 4.40
1987 12444 2.321060 CGTCCACGATTGCGATGC 59.679 61.111 0.00 0.00 43.02 3.91
1988 12445 2.321060 GCGTCCACGATTGCGATG 59.679 61.111 2.58 0.00 43.02 3.84
1989 12446 2.890474 GGCGTCCACGATTGCGAT 60.890 61.111 2.58 0.00 43.02 4.58
2161 12622 6.377327 TTTCAGACAAGTTTCCTGCTAAAG 57.623 37.500 0.00 0.00 0.00 1.85
2164 12625 6.995686 TGTAATTTCAGACAAGTTTCCTGCTA 59.004 34.615 0.00 0.00 0.00 3.49
2166 12627 6.072112 TGTAATTTCAGACAAGTTTCCTGC 57.928 37.500 0.00 0.00 0.00 4.85
2168 12629 5.827797 TGCTGTAATTTCAGACAAGTTTCCT 59.172 36.000 15.52 0.00 37.61 3.36
2169 12630 6.072112 TGCTGTAATTTCAGACAAGTTTCC 57.928 37.500 15.52 0.00 37.61 3.13
2170 12631 6.729187 ACTGCTGTAATTTCAGACAAGTTTC 58.271 36.000 15.52 0.00 37.61 2.78
2171 12632 6.543831 AGACTGCTGTAATTTCAGACAAGTTT 59.456 34.615 15.52 7.84 37.61 2.66
2172 12633 6.017605 CAGACTGCTGTAATTTCAGACAAGTT 60.018 38.462 15.52 4.85 37.61 2.66
2173 12634 5.468072 CAGACTGCTGTAATTTCAGACAAGT 59.532 40.000 15.52 13.60 37.61 3.16
2174 12635 5.698089 TCAGACTGCTGTAATTTCAGACAAG 59.302 40.000 15.52 10.97 42.84 3.16
2175 12636 5.610398 TCAGACTGCTGTAATTTCAGACAA 58.390 37.500 15.52 0.35 42.84 3.18
2176 12637 5.213891 TCAGACTGCTGTAATTTCAGACA 57.786 39.130 15.52 11.28 42.84 3.41
2177 12638 6.545504 TTTCAGACTGCTGTAATTTCAGAC 57.454 37.500 15.52 7.67 42.84 3.51
2178 12639 7.750229 ATTTTCAGACTGCTGTAATTTCAGA 57.250 32.000 15.52 1.16 42.84 3.27
2179 12640 8.725148 ACTATTTTCAGACTGCTGTAATTTCAG 58.275 33.333 7.66 7.66 42.84 3.02
2180 12641 8.621532 ACTATTTTCAGACTGCTGTAATTTCA 57.378 30.769 0.00 0.00 42.84 2.69
2181 12642 9.899226 AAACTATTTTCAGACTGCTGTAATTTC 57.101 29.630 0.00 0.00 42.84 2.17
2184 12645 9.726438 AGTAAACTATTTTCAGACTGCTGTAAT 57.274 29.630 0.00 0.00 42.84 1.89
2185 12646 8.988934 CAGTAAACTATTTTCAGACTGCTGTAA 58.011 33.333 0.00 0.00 42.84 2.41
2186 12647 8.364894 TCAGTAAACTATTTTCAGACTGCTGTA 58.635 33.333 0.00 0.00 42.84 2.74
2187 12648 7.217200 TCAGTAAACTATTTTCAGACTGCTGT 58.783 34.615 0.00 0.00 42.84 4.40
2188 12649 7.658179 TCAGTAAACTATTTTCAGACTGCTG 57.342 36.000 0.00 0.00 43.67 4.41
2189 12650 8.560374 GTTTCAGTAAACTATTTTCAGACTGCT 58.440 33.333 0.00 0.00 41.52 4.24
2190 12651 7.803659 GGTTTCAGTAAACTATTTTCAGACTGC 59.196 37.037 0.00 0.00 43.76 4.40
2191 12652 8.009974 CGGTTTCAGTAAACTATTTTCAGACTG 58.990 37.037 0.00 0.00 43.76 3.51
2192 12653 7.172703 CCGGTTTCAGTAAACTATTTTCAGACT 59.827 37.037 0.00 0.00 43.76 3.24
2193 12654 7.041576 ACCGGTTTCAGTAAACTATTTTCAGAC 60.042 37.037 0.00 0.00 43.76 3.51
2194 12655 6.993902 ACCGGTTTCAGTAAACTATTTTCAGA 59.006 34.615 0.00 0.00 43.76 3.27
2195 12656 7.075741 CACCGGTTTCAGTAAACTATTTTCAG 58.924 38.462 2.97 0.00 43.76 3.02
2196 12657 6.543100 ACACCGGTTTCAGTAAACTATTTTCA 59.457 34.615 2.97 0.00 43.76 2.69
2197 12658 6.962686 ACACCGGTTTCAGTAAACTATTTTC 58.037 36.000 2.97 0.00 43.76 2.29
2198 12659 6.947644 ACACCGGTTTCAGTAAACTATTTT 57.052 33.333 2.97 0.00 43.76 1.82
2199 12660 7.219322 ACTACACCGGTTTCAGTAAACTATTT 58.781 34.615 2.97 0.00 43.76 1.40
2200 12661 6.762333 ACTACACCGGTTTCAGTAAACTATT 58.238 36.000 2.97 0.00 43.76 1.73
2201 12662 6.210185 AGACTACACCGGTTTCAGTAAACTAT 59.790 38.462 2.97 0.00 43.76 2.12
2202 12663 5.536161 AGACTACACCGGTTTCAGTAAACTA 59.464 40.000 2.97 0.00 43.76 2.24
2203 12664 4.343239 AGACTACACCGGTTTCAGTAAACT 59.657 41.667 2.97 3.70 43.76 2.66
2204 12665 4.446719 CAGACTACACCGGTTTCAGTAAAC 59.553 45.833 2.97 1.37 43.58 2.01
2205 12666 4.341806 TCAGACTACACCGGTTTCAGTAAA 59.658 41.667 2.97 0.00 0.00 2.01
2206 12667 3.890756 TCAGACTACACCGGTTTCAGTAA 59.109 43.478 2.97 0.00 0.00 2.24
2207 12668 3.489355 TCAGACTACACCGGTTTCAGTA 58.511 45.455 2.97 2.88 0.00 2.74
2208 12669 2.313317 TCAGACTACACCGGTTTCAGT 58.687 47.619 2.97 8.47 0.00 3.41
2209 12670 3.380479 TTCAGACTACACCGGTTTCAG 57.620 47.619 2.97 4.63 0.00 3.02
2210 12671 3.133362 AGTTTCAGACTACACCGGTTTCA 59.867 43.478 2.97 0.00 36.65 2.69
2211 12672 3.725490 AGTTTCAGACTACACCGGTTTC 58.275 45.455 2.97 0.00 36.65 2.78
2212 12673 3.832615 AGTTTCAGACTACACCGGTTT 57.167 42.857 2.97 0.00 36.65 3.27
2213 12674 3.832615 AAGTTTCAGACTACACCGGTT 57.167 42.857 2.97 0.00 37.72 4.44
2214 12675 3.832615 AAAGTTTCAGACTACACCGGT 57.167 42.857 0.00 0.00 37.72 5.28
2215 12676 3.303791 GCAAAAGTTTCAGACTACACCGG 60.304 47.826 0.00 0.00 37.72 5.28
2216 12677 3.560068 AGCAAAAGTTTCAGACTACACCG 59.440 43.478 0.00 0.00 37.72 4.94
2217 12678 6.613755 TTAGCAAAAGTTTCAGACTACACC 57.386 37.500 0.00 0.00 37.72 4.16
2218 12679 8.012241 CAGATTAGCAAAAGTTTCAGACTACAC 58.988 37.037 0.00 0.00 37.72 2.90
2219 12680 7.715249 ACAGATTAGCAAAAGTTTCAGACTACA 59.285 33.333 0.00 0.00 37.72 2.74
2220 12681 8.089115 ACAGATTAGCAAAAGTTTCAGACTAC 57.911 34.615 0.00 0.00 37.72 2.73
2221 12682 8.677148 AACAGATTAGCAAAAGTTTCAGACTA 57.323 30.769 0.00 0.00 37.72 2.59
2222 12683 7.573968 AACAGATTAGCAAAAGTTTCAGACT 57.426 32.000 0.00 0.00 41.47 3.24
2223 12684 7.915397 TGAAACAGATTAGCAAAAGTTTCAGAC 59.085 33.333 12.77 0.00 45.49 3.51
2224 12685 7.995289 TGAAACAGATTAGCAAAAGTTTCAGA 58.005 30.769 12.77 0.00 45.49 3.27
2227 12688 8.634475 AACTGAAACAGATTAGCAAAAGTTTC 57.366 30.769 5.76 0.00 42.92 2.78
2228 12689 9.736023 CTAACTGAAACAGATTAGCAAAAGTTT 57.264 29.630 5.76 0.00 35.18 2.66
2229 12690 8.352942 CCTAACTGAAACAGATTAGCAAAAGTT 58.647 33.333 5.76 0.00 35.18 2.66
2230 12691 7.719633 TCCTAACTGAAACAGATTAGCAAAAGT 59.280 33.333 5.76 0.00 35.18 2.66
2231 12692 8.099364 TCCTAACTGAAACAGATTAGCAAAAG 57.901 34.615 5.76 0.00 35.18 2.27
2232 12693 7.719633 ACTCCTAACTGAAACAGATTAGCAAAA 59.280 33.333 5.76 0.00 35.18 2.44
2233 12694 7.224297 ACTCCTAACTGAAACAGATTAGCAAA 58.776 34.615 5.76 0.41 35.18 3.68
2234 12695 6.769512 ACTCCTAACTGAAACAGATTAGCAA 58.230 36.000 5.76 2.17 35.18 3.91
2235 12696 6.360370 ACTCCTAACTGAAACAGATTAGCA 57.640 37.500 5.76 0.00 35.18 3.49
2236 12697 8.773404 TTAACTCCTAACTGAAACAGATTAGC 57.227 34.615 5.76 0.00 35.18 3.09
2238 12699 9.924650 GTCTTAACTCCTAACTGAAACAGATTA 57.075 33.333 5.76 1.16 35.18 1.75
2239 12700 8.429641 TGTCTTAACTCCTAACTGAAACAGATT 58.570 33.333 5.76 0.13 35.18 2.40
2240 12701 7.963532 TGTCTTAACTCCTAACTGAAACAGAT 58.036 34.615 5.76 0.00 35.18 2.90
2241 12702 7.356089 TGTCTTAACTCCTAACTGAAACAGA 57.644 36.000 5.76 0.00 35.18 3.41
2242 12703 7.118390 CCATGTCTTAACTCCTAACTGAAACAG 59.882 40.741 0.00 0.00 37.52 3.16
2243 12704 6.934645 CCATGTCTTAACTCCTAACTGAAACA 59.065 38.462 0.00 0.00 0.00 2.83
2244 12705 7.159372 TCCATGTCTTAACTCCTAACTGAAAC 58.841 38.462 0.00 0.00 0.00 2.78
2245 12706 7.311092 TCCATGTCTTAACTCCTAACTGAAA 57.689 36.000 0.00 0.00 0.00 2.69
2246 12707 6.928348 TCCATGTCTTAACTCCTAACTGAA 57.072 37.500 0.00 0.00 0.00 3.02
2247 12708 6.928348 TTCCATGTCTTAACTCCTAACTGA 57.072 37.500 0.00 0.00 0.00 3.41
2248 12709 9.319143 CTATTTCCATGTCTTAACTCCTAACTG 57.681 37.037 0.00 0.00 0.00 3.16
2249 12710 9.047947 ACTATTTCCATGTCTTAACTCCTAACT 57.952 33.333 0.00 0.00 0.00 2.24
2250 12711 9.315525 GACTATTTCCATGTCTTAACTCCTAAC 57.684 37.037 0.00 0.00 0.00 2.34
2251 12712 9.268282 AGACTATTTCCATGTCTTAACTCCTAA 57.732 33.333 0.00 0.00 37.76 2.69
2252 12713 8.696374 CAGACTATTTCCATGTCTTAACTCCTA 58.304 37.037 0.00 0.00 38.80 2.94
2253 12714 7.400339 TCAGACTATTTCCATGTCTTAACTCCT 59.600 37.037 0.00 0.00 38.80 3.69
2254 12715 7.556844 TCAGACTATTTCCATGTCTTAACTCC 58.443 38.462 0.00 0.00 38.80 3.85
2255 12716 8.874816 GTTCAGACTATTTCCATGTCTTAACTC 58.125 37.037 10.35 0.00 39.68 3.01
2256 12717 8.598041 AGTTCAGACTATTTCCATGTCTTAACT 58.402 33.333 13.02 13.02 43.98 2.24
2257 12718 8.660373 CAGTTCAGACTATTTCCATGTCTTAAC 58.340 37.037 9.87 9.87 41.45 2.01
2258 12719 7.334421 GCAGTTCAGACTATTTCCATGTCTTAA 59.666 37.037 0.00 0.00 38.80 1.85
2259 12720 6.818644 GCAGTTCAGACTATTTCCATGTCTTA 59.181 38.462 0.00 0.00 38.80 2.10
2260 12721 5.645497 GCAGTTCAGACTATTTCCATGTCTT 59.355 40.000 0.00 0.00 38.80 3.01
2261 12722 5.046014 AGCAGTTCAGACTATTTCCATGTCT 60.046 40.000 0.00 0.00 41.15 3.41
2262 12723 5.064452 CAGCAGTTCAGACTATTTCCATGTC 59.936 44.000 0.00 0.00 33.90 3.06
2263 12724 4.940046 CAGCAGTTCAGACTATTTCCATGT 59.060 41.667 0.00 0.00 33.90 3.21
2264 12725 4.940046 ACAGCAGTTCAGACTATTTCCATG 59.060 41.667 0.00 0.00 33.90 3.66
2265 12726 5.171339 ACAGCAGTTCAGACTATTTCCAT 57.829 39.130 0.00 0.00 33.90 3.41
2266 12727 4.569943 GACAGCAGTTCAGACTATTTCCA 58.430 43.478 0.00 0.00 33.90 3.53
2267 12728 3.614616 CGACAGCAGTTCAGACTATTTCC 59.385 47.826 0.00 0.00 33.90 3.13
2268 12729 3.614616 CCGACAGCAGTTCAGACTATTTC 59.385 47.826 0.00 0.00 33.90 2.17
2269 12730 3.258372 TCCGACAGCAGTTCAGACTATTT 59.742 43.478 0.00 0.00 33.90 1.40
2270 12731 2.826128 TCCGACAGCAGTTCAGACTATT 59.174 45.455 0.00 0.00 33.90 1.73
2271 12732 2.447443 TCCGACAGCAGTTCAGACTAT 58.553 47.619 0.00 0.00 33.90 2.12
2272 12733 1.905637 TCCGACAGCAGTTCAGACTA 58.094 50.000 0.00 0.00 33.90 2.59
2273 12734 1.203523 GATCCGACAGCAGTTCAGACT 59.796 52.381 0.00 0.00 36.25 3.24
2274 12735 1.067565 TGATCCGACAGCAGTTCAGAC 60.068 52.381 0.00 0.00 0.00 3.51
2275 12736 1.256812 TGATCCGACAGCAGTTCAGA 58.743 50.000 0.00 0.00 0.00 3.27
2276 12737 2.306341 ATGATCCGACAGCAGTTCAG 57.694 50.000 0.00 0.00 0.00 3.02
2277 12738 3.023832 TCTATGATCCGACAGCAGTTCA 58.976 45.455 0.00 0.00 0.00 3.18
2278 12739 3.181486 TGTCTATGATCCGACAGCAGTTC 60.181 47.826 5.73 0.00 35.40 3.01
2279 12740 2.760650 TGTCTATGATCCGACAGCAGTT 59.239 45.455 5.73 0.00 35.40 3.16
2280 12741 2.379005 TGTCTATGATCCGACAGCAGT 58.621 47.619 5.73 0.00 35.40 4.40
2281 12742 3.573598 GATGTCTATGATCCGACAGCAG 58.426 50.000 15.73 0.00 43.77 4.24
2282 12743 3.650070 GATGTCTATGATCCGACAGCA 57.350 47.619 15.73 0.00 43.77 4.41
2283 12744 3.005261 AGTGATGTCTATGATCCGACAGC 59.995 47.826 14.46 14.46 44.38 4.40
2284 12745 4.844998 AGTGATGTCTATGATCCGACAG 57.155 45.455 12.94 0.00 42.73 3.51
2285 12746 6.709018 TTTAGTGATGTCTATGATCCGACA 57.291 37.500 10.70 10.70 43.51 4.35
2286 12747 7.203910 ACTTTTAGTGATGTCTATGATCCGAC 58.796 38.462 0.00 0.00 0.00 4.79
2287 12748 7.348080 ACTTTTAGTGATGTCTATGATCCGA 57.652 36.000 0.00 0.00 0.00 4.55
2288 12749 7.169982 GGAACTTTTAGTGATGTCTATGATCCG 59.830 40.741 0.00 0.00 0.00 4.18
2289 12750 8.207545 AGGAACTTTTAGTGATGTCTATGATCC 58.792 37.037 0.00 0.00 27.25 3.36
2290 12751 9.039870 CAGGAACTTTTAGTGATGTCTATGATC 57.960 37.037 0.00 0.00 34.60 2.92
2291 12752 8.762645 TCAGGAACTTTTAGTGATGTCTATGAT 58.237 33.333 0.00 0.00 34.60 2.45
2292 12753 8.134202 TCAGGAACTTTTAGTGATGTCTATGA 57.866 34.615 0.00 0.00 34.60 2.15
2293 12754 8.954950 ATCAGGAACTTTTAGTGATGTCTATG 57.045 34.615 0.00 0.00 34.60 2.23
2294 12755 9.606631 GAATCAGGAACTTTTAGTGATGTCTAT 57.393 33.333 0.00 0.00 34.60 1.98
2295 12756 8.593679 TGAATCAGGAACTTTTAGTGATGTCTA 58.406 33.333 0.00 0.00 34.60 2.59
2296 12757 7.453393 TGAATCAGGAACTTTTAGTGATGTCT 58.547 34.615 0.00 0.00 34.60 3.41
2297 12758 7.672983 TGAATCAGGAACTTTTAGTGATGTC 57.327 36.000 0.00 0.00 34.60 3.06
2298 12759 8.463930 TTTGAATCAGGAACTTTTAGTGATGT 57.536 30.769 0.00 0.00 34.60 3.06
2299 12760 9.565213 GATTTGAATCAGGAACTTTTAGTGATG 57.435 33.333 0.00 0.00 34.60 3.07
2300 12761 8.743714 GGATTTGAATCAGGAACTTTTAGTGAT 58.256 33.333 6.11 0.00 34.60 3.06
2301 12762 7.944554 AGGATTTGAATCAGGAACTTTTAGTGA 59.055 33.333 6.11 0.00 34.60 3.41
2302 12763 8.115490 AGGATTTGAATCAGGAACTTTTAGTG 57.885 34.615 6.11 0.00 34.60 2.74
2303 12764 7.944554 TGAGGATTTGAATCAGGAACTTTTAGT 59.055 33.333 6.11 0.00 34.60 2.24
2304 12765 8.340618 TGAGGATTTGAATCAGGAACTTTTAG 57.659 34.615 6.11 0.00 34.60 1.85
2305 12766 8.576442 GTTGAGGATTTGAATCAGGAACTTTTA 58.424 33.333 6.11 0.00 34.60 1.52
2306 12767 7.288621 AGTTGAGGATTTGAATCAGGAACTTTT 59.711 33.333 6.11 0.00 34.60 2.27
2307 12768 6.779539 AGTTGAGGATTTGAATCAGGAACTTT 59.220 34.615 6.11 0.00 34.60 2.66
2308 12769 6.310149 AGTTGAGGATTTGAATCAGGAACTT 58.690 36.000 6.11 0.00 34.60 2.66
2309 12770 5.885465 AGTTGAGGATTTGAATCAGGAACT 58.115 37.500 6.11 6.79 43.88 3.01
2310 12771 6.432472 AGAAGTTGAGGATTTGAATCAGGAAC 59.568 38.462 6.11 5.01 37.15 3.62
2311 12772 6.546484 AGAAGTTGAGGATTTGAATCAGGAA 58.454 36.000 6.11 0.00 37.15 3.36
2312 12773 6.131972 AGAAGTTGAGGATTTGAATCAGGA 57.868 37.500 6.11 0.00 37.15 3.86
2313 12774 6.830873 AAGAAGTTGAGGATTTGAATCAGG 57.169 37.500 6.11 0.00 37.15 3.86
2314 12775 8.558973 AGTAAGAAGTTGAGGATTTGAATCAG 57.441 34.615 6.11 0.00 37.15 2.90
2315 12776 8.378565 AGAGTAAGAAGTTGAGGATTTGAATCA 58.621 33.333 6.11 0.00 37.15 2.57
2316 12777 8.785329 AGAGTAAGAAGTTGAGGATTTGAATC 57.215 34.615 0.00 0.00 34.66 2.52
2317 12778 9.225436 GAAGAGTAAGAAGTTGAGGATTTGAAT 57.775 33.333 0.00 0.00 0.00 2.57
2318 12779 8.432805 AGAAGAGTAAGAAGTTGAGGATTTGAA 58.567 33.333 0.00 0.00 0.00 2.69
2319 12780 7.967908 AGAAGAGTAAGAAGTTGAGGATTTGA 58.032 34.615 0.00 0.00 0.00 2.69
2320 12781 7.333174 GGAGAAGAGTAAGAAGTTGAGGATTTG 59.667 40.741 0.00 0.00 0.00 2.32
2321 12782 7.236640 AGGAGAAGAGTAAGAAGTTGAGGATTT 59.763 37.037 0.00 0.00 0.00 2.17
2322 12783 6.728632 AGGAGAAGAGTAAGAAGTTGAGGATT 59.271 38.462 0.00 0.00 0.00 3.01
2323 12784 6.260663 AGGAGAAGAGTAAGAAGTTGAGGAT 58.739 40.000 0.00 0.00 0.00 3.24
2324 12785 5.646215 AGGAGAAGAGTAAGAAGTTGAGGA 58.354 41.667 0.00 0.00 0.00 3.71
2325 12786 5.993748 AGGAGAAGAGTAAGAAGTTGAGG 57.006 43.478 0.00 0.00 0.00 3.86
2326 12787 6.648725 CCAAAGGAGAAGAGTAAGAAGTTGAG 59.351 42.308 0.00 0.00 0.00 3.02
2327 12788 6.525629 CCAAAGGAGAAGAGTAAGAAGTTGA 58.474 40.000 0.00 0.00 0.00 3.18
2328 12789 5.180304 GCCAAAGGAGAAGAGTAAGAAGTTG 59.820 44.000 0.00 0.00 0.00 3.16
2329 12790 5.163195 TGCCAAAGGAGAAGAGTAAGAAGTT 60.163 40.000 0.00 0.00 0.00 2.66
2330 12791 4.348168 TGCCAAAGGAGAAGAGTAAGAAGT 59.652 41.667 0.00 0.00 0.00 3.01
2331 12792 4.899502 TGCCAAAGGAGAAGAGTAAGAAG 58.100 43.478 0.00 0.00 0.00 2.85
2332 12793 4.899502 CTGCCAAAGGAGAAGAGTAAGAA 58.100 43.478 0.00 0.00 0.00 2.52
2333 12794 4.543590 CTGCCAAAGGAGAAGAGTAAGA 57.456 45.455 0.00 0.00 0.00 2.10
2369 12898 6.064846 ACAAGTTCAAGACTAGTGCAAATG 57.935 37.500 0.00 0.00 37.72 2.32
2406 12939 8.896744 TCATACTGCAAACTACTATTACGTACT 58.103 33.333 0.00 0.00 0.00 2.73
2407 12940 9.507280 TTCATACTGCAAACTACTATTACGTAC 57.493 33.333 0.00 0.00 0.00 3.67
2409 12942 8.991243 TTTCATACTGCAAACTACTATTACGT 57.009 30.769 0.00 0.00 0.00 3.57
2429 12990 8.079809 CACCGGTTTCAGTAAACTATTTTTCAT 58.920 33.333 2.97 0.00 43.76 2.57
2475 13038 6.071616 AGTCTTAGCTCCTAACTGAAACAGAG 60.072 42.308 5.76 0.00 35.18 3.35
2502 16046 3.935828 GACAGCAGTTCAGACTATTTCCC 59.064 47.826 0.00 0.00 33.90 3.97
2644 20102 5.284079 CAGACTGAACTGATTTGGGTTTTG 58.716 41.667 0.00 0.00 39.94 2.44
2695 20499 5.869888 ACAGTAGGCTAAGAAACAGAAATCG 59.130 40.000 0.00 0.00 0.00 3.34
2737 20541 3.315191 ACAGAACCTGAATTTTGTCCACG 59.685 43.478 0.45 0.00 35.18 4.94
2843 21108 5.786311 AGTTAAACAGTTAGGCGTCATGTA 58.214 37.500 0.00 0.00 0.00 2.29
2985 21257 2.094854 ACTGGGTTCTAATGTCGTCGTC 60.095 50.000 0.00 0.00 0.00 4.20
3166 21450 2.098614 TGGCCATTGTCAACGCATTAT 58.901 42.857 0.00 0.00 0.00 1.28
3201 21486 5.363939 GACACCTAAGAGAAATGCAGCTAT 58.636 41.667 0.00 0.00 0.00 2.97
3229 21514 3.674997 TCTTCAGGCAGGTTCATTACAC 58.325 45.455 0.00 0.00 0.00 2.90
3254 21539 7.414436 TGCAGAATACAACAGTTTCAGTAAAC 58.586 34.615 0.00 0.00 44.47 2.01
3300 22605 3.054802 CCAGACAGCTCCCAAGTTCTAAT 60.055 47.826 0.00 0.00 0.00 1.73
3401 22747 6.530120 TGTAGACCAATTAGCTTCAGACAAA 58.470 36.000 0.00 0.00 0.00 2.83
3463 22856 3.821033 AGGACAGCAGTATGAAACCAAAC 59.179 43.478 0.00 0.00 39.69 2.93
3521 22959 6.491394 CGGTAAATCAAACAGAAACTTGACA 58.509 36.000 0.00 0.00 34.52 3.58
3554 23000 6.565999 GCAGTACGCTAATCAAACAGAAACTT 60.566 38.462 2.99 0.00 37.77 2.66
3555 23001 5.107065 GCAGTACGCTAATCAAACAGAAACT 60.107 40.000 2.99 0.00 37.77 2.66
3556 23002 5.080068 GCAGTACGCTAATCAAACAGAAAC 58.920 41.667 2.99 0.00 37.77 2.78
3558 23004 4.311606 TGCAGTACGCTAATCAAACAGAA 58.688 39.130 10.27 0.00 43.06 3.02
3559 23005 3.920446 TGCAGTACGCTAATCAAACAGA 58.080 40.909 10.27 0.00 43.06 3.41
3560 23006 4.661993 TTGCAGTACGCTAATCAAACAG 57.338 40.909 10.27 0.00 43.06 3.16
3561 23007 4.094294 GGATTGCAGTACGCTAATCAAACA 59.906 41.667 20.98 0.00 43.06 2.83
3562 23008 4.332819 AGGATTGCAGTACGCTAATCAAAC 59.667 41.667 20.98 12.67 43.06 2.93
3563 23009 4.332543 CAGGATTGCAGTACGCTAATCAAA 59.667 41.667 20.98 7.88 43.06 2.69
3564 23010 3.871006 CAGGATTGCAGTACGCTAATCAA 59.129 43.478 20.98 9.82 43.06 2.57
3565 23011 3.132111 TCAGGATTGCAGTACGCTAATCA 59.868 43.478 20.98 9.92 43.06 2.57
3566 23012 3.717707 TCAGGATTGCAGTACGCTAATC 58.282 45.455 16.52 16.52 43.06 1.75
3568 23014 3.819564 ATCAGGATTGCAGTACGCTAA 57.180 42.857 10.27 4.84 43.06 3.09
3569 23015 3.819564 AATCAGGATTGCAGTACGCTA 57.180 42.857 10.27 4.29 43.06 4.26
3573 23194 6.922957 TCAAACAAAAATCAGGATTGCAGTAC 59.077 34.615 0.00 0.00 0.00 2.73
3579 23200 8.164153 CGCTAAATCAAACAAAAATCAGGATTG 58.836 33.333 0.00 0.00 0.00 2.67
3585 23206 9.469807 ACAATACGCTAAATCAAACAAAAATCA 57.530 25.926 0.00 0.00 0.00 2.57
3615 23240 6.928492 TGAATTTGGTTCAGTTATTCAAAGCC 59.072 34.615 0.00 0.00 41.79 4.35
3656 23339 1.067283 AGAAGACAGACAGCCGATGTG 60.067 52.381 0.00 0.00 44.17 3.21
3661 23344 3.246619 GAACTTAGAAGACAGACAGCCG 58.753 50.000 0.00 0.00 0.00 5.52
3702 23405 3.119424 TGTCACTGATAATGCGACCGTTA 60.119 43.478 0.00 0.00 0.00 3.18
3709 23412 2.258755 TGTCGTGTCACTGATAATGCG 58.741 47.619 0.65 0.00 0.00 4.73
3718 23429 5.654603 TTTAGGTATCATGTCGTGTCACT 57.345 39.130 0.65 0.00 0.00 3.41
3725 23436 6.422100 CAGTGAGGAATTTAGGTATCATGTCG 59.578 42.308 0.00 0.00 0.00 4.35
3776 23487 2.682494 ACATCCCGGTACCGCAGT 60.682 61.111 29.15 19.07 38.24 4.40
3796 23507 5.507315 GCTCCTATCTTTCTCTACTCTGCAC 60.507 48.000 0.00 0.00 0.00 4.57
3839 23551 1.202891 TCTGAAGAGGTGGACTGTCGA 60.203 52.381 1.07 0.00 0.00 4.20
3840 23552 1.248486 TCTGAAGAGGTGGACTGTCG 58.752 55.000 1.07 0.00 0.00 4.35
3871 23583 2.110578 TCTCATGTCATCGTGTCCCAT 58.889 47.619 0.00 0.00 32.85 4.00
3921 23686 4.008330 GCTGGGTTTTCCTCCTAAACTAC 58.992 47.826 0.00 0.00 40.46 2.73
3922 23687 3.653836 TGCTGGGTTTTCCTCCTAAACTA 59.346 43.478 0.00 0.00 40.46 2.24
3923 23688 2.445525 TGCTGGGTTTTCCTCCTAAACT 59.554 45.455 0.00 0.00 40.46 2.66
3924 23689 2.820197 CTGCTGGGTTTTCCTCCTAAAC 59.180 50.000 0.00 0.00 40.46 2.01
4043 23822 5.472148 TGACCGACGTCACTGTATAATTTT 58.528 37.500 17.16 0.00 44.20 1.82
4066 23880 5.351465 CCACAATAAGAACGCAGTCATTACT 59.649 40.000 0.00 0.00 45.00 2.24
4101 23943 2.812542 GAAATGCACCCCGAAACGCC 62.813 60.000 0.00 0.00 0.00 5.68
4109 24046 2.099756 GCATGTAAGAGAAATGCACCCC 59.900 50.000 0.00 0.00 44.83 4.95
4164 24101 2.235891 TCTAAACTCGAGTGGACTGCA 58.764 47.619 20.85 0.00 0.00 4.41
4184 24121 2.358898 ACTGAAACTTGAAAGCGCACAT 59.641 40.909 11.47 0.00 0.00 3.21
4190 24185 3.968649 TGATGCACTGAAACTTGAAAGC 58.031 40.909 0.00 0.00 0.00 3.51
4206 24201 3.928375 ACAAATTCATTTTCCGCTGATGC 59.072 39.130 0.00 0.00 0.00 3.91
4377 24457 4.284234 TGAGTTCTGATCATGTGGTTGAGA 59.716 41.667 0.00 0.00 0.00 3.27
4380 24460 4.939439 TGATGAGTTCTGATCATGTGGTTG 59.061 41.667 0.00 0.00 37.52 3.77
4381 24461 5.169992 TGATGAGTTCTGATCATGTGGTT 57.830 39.130 0.00 0.00 37.52 3.67
4382 24462 4.831674 TGATGAGTTCTGATCATGTGGT 57.168 40.909 0.00 0.00 37.52 4.16
4410 24839 1.519234 CCTCTGTTGCTGCGCGATA 60.519 57.895 12.10 0.00 0.00 2.92
4545 24985 2.865079 TCTTGTCCGATCTAGGCTAGG 58.135 52.381 20.92 6.45 0.00 3.02
4546 24986 4.075682 TGATCTTGTCCGATCTAGGCTAG 58.924 47.826 15.56 15.56 40.32 3.42
4547 24987 4.075682 CTGATCTTGTCCGATCTAGGCTA 58.924 47.826 0.00 0.00 40.32 3.93
4548 24988 2.890311 CTGATCTTGTCCGATCTAGGCT 59.110 50.000 0.00 0.00 40.32 4.58
4549 24989 2.887783 TCTGATCTTGTCCGATCTAGGC 59.112 50.000 0.00 0.00 40.32 3.93
4633 26388 6.925610 CATTAGCTGAATGTAAGGCTGTTA 57.074 37.500 0.00 0.00 40.21 2.41
5042 26834 1.073216 CGAAGCGCAAGTCGATGAGT 61.073 55.000 19.49 0.00 37.99 3.41
5117 26911 1.810755 CACTGTCTGTCCTACGTAGCA 59.189 52.381 17.41 9.65 0.00 3.49
5118 26912 1.811359 ACACTGTCTGTCCTACGTAGC 59.189 52.381 17.41 5.19 0.00 3.58
5119 26913 2.812591 ACACACTGTCTGTCCTACGTAG 59.187 50.000 15.92 15.92 0.00 3.51
5120 26914 2.854963 ACACACTGTCTGTCCTACGTA 58.145 47.619 0.00 0.00 0.00 3.57
5124 26918 2.394632 ACCAACACACTGTCTGTCCTA 58.605 47.619 0.00 0.00 0.00 2.94
5125 26919 1.204146 ACCAACACACTGTCTGTCCT 58.796 50.000 0.00 0.00 0.00 3.85
5126 26920 2.548067 CCTACCAACACACTGTCTGTCC 60.548 54.545 0.00 0.00 0.00 4.02
5128 26922 1.202651 GCCTACCAACACACTGTCTGT 60.203 52.381 0.00 0.00 0.00 3.41
5130 26924 1.128200 TGCCTACCAACACACTGTCT 58.872 50.000 0.00 0.00 0.00 3.41
5131 26925 1.961793 TTGCCTACCAACACACTGTC 58.038 50.000 0.00 0.00 0.00 3.51
5132 26926 2.297701 CTTTGCCTACCAACACACTGT 58.702 47.619 0.00 0.00 31.97 3.55
5133 26927 1.608590 CCTTTGCCTACCAACACACTG 59.391 52.381 0.00 0.00 31.97 3.66
5134 26928 1.478654 CCCTTTGCCTACCAACACACT 60.479 52.381 0.00 0.00 31.97 3.55
5148 26942 2.912025 AGCACGCCCAACCCTTTG 60.912 61.111 0.00 0.00 0.00 2.77
5167 26961 5.552178 GGAGTAGGCACATCCTTTATAAGG 58.448 45.833 0.00 0.00 44.75 2.69
5168 26962 5.010719 TCGGAGTAGGCACATCCTTTATAAG 59.989 44.000 0.00 0.00 44.75 1.73
5169 26963 4.897076 TCGGAGTAGGCACATCCTTTATAA 59.103 41.667 0.00 0.00 44.75 0.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.