Multiple sequence alignment - TraesCS7A01G116100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G116100 chr7A 100.000 6315 0 0 1 6315 74166382 74160068 0.000000e+00 11662.0
1 TraesCS7A01G116100 chr7B 90.184 4401 302 68 327 4665 8858425 8862757 0.000000e+00 5614.0
2 TraesCS7A01G116100 chr7B 91.931 979 53 9 1168 2134 18992192 18993156 0.000000e+00 1347.0
3 TraesCS7A01G116100 chr7B 87.850 749 47 19 5569 6307 8865650 8866364 0.000000e+00 839.0
4 TraesCS7A01G116100 chr7B 87.031 586 37 18 4696 5243 8862755 8863339 5.380000e-175 625.0
5 TraesCS7A01G116100 chr7B 80.061 326 36 10 1 321 8858025 8858326 1.380000e-51 215.0
6 TraesCS7A01G116100 chr7D 90.823 3378 206 52 327 3627 66689423 66692773 0.000000e+00 4425.0
7 TraesCS7A01G116100 chr7D 90.244 1189 69 21 3691 4859 66692798 66693959 0.000000e+00 1509.0
8 TraesCS7A01G116100 chr7D 87.769 744 37 23 5570 6304 66695901 66696599 0.000000e+00 821.0
9 TraesCS7A01G116100 chr7D 86.631 561 41 12 4707 5243 66693945 66694495 1.960000e-164 590.0
10 TraesCS7A01G116100 chr7D 88.158 152 12 5 160 308 66689166 66689314 6.510000e-40 176.0
11 TraesCS7A01G116100 chr4D 97.222 36 1 0 2811 2846 241149823 241149788 1.900000e-05 62.1
12 TraesCS7A01G116100 chr4D 100.000 30 0 0 2817 2846 123301117 123301088 8.840000e-04 56.5
13 TraesCS7A01G116100 chr1D 97.222 36 1 0 2811 2846 298814749 298814784 1.900000e-05 62.1
14 TraesCS7A01G116100 chr5B 100.000 32 0 0 2815 2846 455630017 455629986 6.840000e-05 60.2
15 TraesCS7A01G116100 chrUn 94.444 36 2 0 2811 2846 275329029 275329064 8.840000e-04 56.5
16 TraesCS7A01G116100 chrUn 94.444 36 2 0 2811 2846 393315012 393315047 8.840000e-04 56.5
17 TraesCS7A01G116100 chrUn 94.444 36 2 0 2811 2846 454685086 454685121 8.840000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G116100 chr7A 74160068 74166382 6314 True 11662.00 11662 100.0000 1 6315 1 chr7A.!!$R1 6314
1 TraesCS7A01G116100 chr7B 8858025 8866364 8339 False 1823.25 5614 86.2815 1 6307 4 chr7B.!!$F2 6306
2 TraesCS7A01G116100 chr7B 18992192 18993156 964 False 1347.00 1347 91.9310 1168 2134 1 chr7B.!!$F1 966
3 TraesCS7A01G116100 chr7D 66689166 66696599 7433 False 1504.20 4425 88.7250 160 6304 5 chr7D.!!$F1 6144

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
737 852 0.164647 GATGATGTTAGCCGATGCGC 59.835 55.0 0.00 0.0 44.33 6.09 F
1541 1682 0.179073 AGCTCGCGCATACATTCCTT 60.179 50.0 8.75 0.0 39.10 3.36 F
1707 1859 0.243907 ACGCGCAGAAGTATGTGACT 59.756 50.0 5.73 0.0 41.56 3.41 F
3527 3700 0.463833 GATCTCCGGTGGCGGATTTT 60.464 55.0 0.00 0.0 37.43 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1604 1746 0.666577 GCTCGTCCGGATTAATCCCG 60.667 60.000 25.6 22.35 44.24 5.14 R
3201 3373 0.767998 ATCCTAAGCCTAAGCCCTGC 59.232 55.000 0.0 0.00 41.25 4.85 R
3663 3836 1.342975 TGAGGATAGCTACCTGGCACA 60.343 52.381 16.6 7.96 37.93 4.57 R
5324 5709 0.179127 ATGACACAGCAGGATCGTCG 60.179 55.000 0.0 0.00 0.00 5.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 3.381983 TCGCGAGCCCAGACATGT 61.382 61.111 3.71 0.00 0.00 3.21
73 76 3.935315 AGACATGTCTGTGGTGATCTTG 58.065 45.455 27.37 0.00 38.75 3.02
78 81 2.300152 TGTCTGTGGTGATCTTGAGGAC 59.700 50.000 0.00 0.00 0.00 3.85
128 131 2.815211 CCACATCCGAGTGTGCCG 60.815 66.667 12.80 0.15 46.27 5.69
145 148 4.008933 GAGCCCACCTGTCGCACT 62.009 66.667 0.00 0.00 0.00 4.40
146 149 3.537206 GAGCCCACCTGTCGCACTT 62.537 63.158 0.00 0.00 0.00 3.16
147 150 3.357079 GCCCACCTGTCGCACTTG 61.357 66.667 0.00 0.00 0.00 3.16
148 151 2.425592 CCCACCTGTCGCACTTGA 59.574 61.111 0.00 0.00 0.00 3.02
149 152 1.227823 CCCACCTGTCGCACTTGAA 60.228 57.895 0.00 0.00 0.00 2.69
150 153 1.230635 CCCACCTGTCGCACTTGAAG 61.231 60.000 0.00 0.00 0.00 3.02
151 154 0.249868 CCACCTGTCGCACTTGAAGA 60.250 55.000 0.00 0.00 0.00 2.87
152 155 1.609061 CCACCTGTCGCACTTGAAGAT 60.609 52.381 0.00 0.00 0.00 2.40
153 156 2.146342 CACCTGTCGCACTTGAAGATT 58.854 47.619 0.00 0.00 0.00 2.40
154 157 3.325870 CACCTGTCGCACTTGAAGATTA 58.674 45.455 0.00 0.00 0.00 1.75
155 158 3.935203 CACCTGTCGCACTTGAAGATTAT 59.065 43.478 0.00 0.00 0.00 1.28
156 159 3.935203 ACCTGTCGCACTTGAAGATTATG 59.065 43.478 0.00 0.00 0.00 1.90
157 160 3.242543 CCTGTCGCACTTGAAGATTATGC 60.243 47.826 0.00 0.00 0.00 3.14
158 161 3.333804 TGTCGCACTTGAAGATTATGCA 58.666 40.909 0.00 0.00 36.02 3.96
159 162 3.940852 TGTCGCACTTGAAGATTATGCAT 59.059 39.130 3.79 3.79 36.02 3.96
160 163 5.115480 TGTCGCACTTGAAGATTATGCATA 58.885 37.500 1.16 1.16 36.02 3.14
161 164 5.234972 TGTCGCACTTGAAGATTATGCATAG 59.765 40.000 6.50 0.00 36.02 2.23
162 165 4.212004 TCGCACTTGAAGATTATGCATAGC 59.788 41.667 6.50 3.68 36.02 2.97
172 175 5.299949 AGATTATGCATAGCACATGTTCGA 58.700 37.500 6.50 0.00 43.04 3.71
203 206 2.223595 CGAGCGCCTATTTCTTCTCTGA 60.224 50.000 2.29 0.00 0.00 3.27
220 223 6.005583 TCTCTGAAAATTGTGCAATGACTC 57.994 37.500 0.00 0.00 0.00 3.36
221 224 5.532032 TCTCTGAAAATTGTGCAATGACTCA 59.468 36.000 0.00 2.08 0.00 3.41
229 232 2.604462 TGTGCAATGACTCATCGATTCG 59.396 45.455 0.00 0.00 0.00 3.34
231 234 3.796717 GTGCAATGACTCATCGATTCGTA 59.203 43.478 5.89 0.00 0.00 3.43
232 235 4.445718 GTGCAATGACTCATCGATTCGTAT 59.554 41.667 5.89 0.00 0.00 3.06
233 236 5.049828 TGCAATGACTCATCGATTCGTATT 58.950 37.500 5.89 0.00 0.00 1.89
299 302 0.313672 AAGCTCGAGATCGCTCATCC 59.686 55.000 18.75 0.00 41.36 3.51
361 458 8.149647 ACAATCTTAGAAAACCAATTCATTGCA 58.850 29.630 0.00 0.00 36.48 4.08
364 461 4.582701 AGAAAACCAATTCATTGCACGA 57.417 36.364 0.00 0.00 36.48 4.35
366 463 2.723124 AACCAATTCATTGCACGACC 57.277 45.000 0.00 0.00 36.48 4.79
367 464 1.614996 ACCAATTCATTGCACGACCA 58.385 45.000 0.00 0.00 36.48 4.02
377 474 0.250684 TGCACGACCACCACATCATT 60.251 50.000 0.00 0.00 0.00 2.57
381 478 3.334691 CACGACCACCACATCATTAGTT 58.665 45.455 0.00 0.00 0.00 2.24
382 479 3.125146 CACGACCACCACATCATTAGTTG 59.875 47.826 0.00 0.00 0.00 3.16
386 483 5.235850 ACCACCACATCATTAGTTGTGTA 57.764 39.130 2.77 0.00 41.65 2.90
390 487 6.029607 CACCACATCATTAGTTGTGTATTGC 58.970 40.000 2.77 0.00 41.65 3.56
401 499 4.582656 AGTTGTGTATTGCCTAACTTTGCA 59.417 37.500 0.00 0.00 35.27 4.08
406 504 0.607620 TTGCCTAACTTTGCATGCCC 59.392 50.000 16.68 0.00 37.33 5.36
411 509 2.036992 CCTAACTTTGCATGCCCAAACA 59.963 45.455 16.68 0.00 31.85 2.83
419 517 0.320073 CATGCCCAAACAGTTGCTGG 60.320 55.000 1.08 0.00 35.51 4.85
443 542 7.039923 TGGTTTCTACAACTTAGTAGGTCTCAG 60.040 40.741 0.00 0.00 41.39 3.35
449 548 6.305411 ACAACTTAGTAGGTCTCAGTAGTGT 58.695 40.000 0.00 0.00 31.28 3.55
453 552 7.456725 ACTTAGTAGGTCTCAGTAGTGTAACA 58.543 38.462 0.00 0.00 41.43 2.41
461 560 4.082949 TCTCAGTAGTGTAACACATCACGG 60.083 45.833 0.00 1.83 41.43 4.94
463 562 2.561419 AGTAGTGTAACACATCACGGCT 59.439 45.455 0.00 0.00 41.43 5.52
518 617 7.561021 TTCTATTGTGCAGTTGTCAGTTTTA 57.439 32.000 0.00 0.00 0.00 1.52
519 618 7.189693 TCTATTGTGCAGTTGTCAGTTTTAG 57.810 36.000 0.00 0.00 0.00 1.85
528 627 6.454186 GCAGTTGTCAGTTTTAGTTTTTGCAG 60.454 38.462 0.00 0.00 0.00 4.41
533 632 9.862371 TTGTCAGTTTTAGTTTTTGCAGATTAA 57.138 25.926 0.00 0.00 0.00 1.40
549 648 6.482973 TGCAGATTAATCTATTTCGTGCATGA 59.517 34.615 17.53 3.97 34.85 3.07
552 651 7.961283 CAGATTAATCTATTTCGTGCATGATGG 59.039 37.037 17.53 0.00 34.85 3.51
569 668 2.340443 GATAGAAGCGCCCGAGGG 59.660 66.667 2.29 3.22 38.57 4.30
583 682 1.518302 GAGGGCGAGAGAAAGGGTC 59.482 63.158 0.00 0.00 0.00 4.46
596 695 2.203294 GGGTCGTGGTTGGTTGCT 60.203 61.111 0.00 0.00 0.00 3.91
602 701 2.904866 TGGTTGGTTGCTGCGTCC 60.905 61.111 6.07 6.07 0.00 4.79
603 702 2.594592 GGTTGGTTGCTGCGTCCT 60.595 61.111 12.64 0.00 0.00 3.85
606 705 1.073025 TTGGTTGCTGCGTCCTGAT 59.927 52.632 12.64 0.00 0.00 2.90
616 715 2.387309 CGTCCTGATGATGCCACAC 58.613 57.895 0.00 0.00 0.00 3.82
621 720 1.340308 CCTGATGATGCCACACCAAGA 60.340 52.381 0.00 0.00 0.00 3.02
622 721 2.651455 CTGATGATGCCACACCAAGAT 58.349 47.619 0.00 0.00 0.00 2.40
623 722 3.021695 CTGATGATGCCACACCAAGATT 58.978 45.455 0.00 0.00 0.00 2.40
627 726 0.892755 ATGCCACACCAAGATTGCAG 59.107 50.000 0.00 0.00 31.53 4.41
685 784 0.537371 GGTTGACAGGTTCAGGTGGG 60.537 60.000 0.00 0.00 34.94 4.61
686 785 0.537371 GTTGACAGGTTCAGGTGGGG 60.537 60.000 0.00 0.00 34.94 4.96
687 786 1.715019 TTGACAGGTTCAGGTGGGGG 61.715 60.000 0.00 0.00 34.94 5.40
688 787 1.846124 GACAGGTTCAGGTGGGGGA 60.846 63.158 0.00 0.00 0.00 4.81
689 788 1.386772 ACAGGTTCAGGTGGGGGAA 60.387 57.895 0.00 0.00 0.00 3.97
690 789 1.074951 CAGGTTCAGGTGGGGGAAC 59.925 63.158 0.00 0.00 42.00 3.62
714 829 6.549364 ACTTTTTCATTTGGACACCACTATCA 59.451 34.615 0.00 0.00 30.78 2.15
717 832 3.007506 TCATTTGGACACCACTATCACGT 59.992 43.478 0.00 0.00 30.78 4.49
722 837 2.165641 GGACACCACTATCACGTGATGA 59.834 50.000 35.46 20.25 43.13 2.92
736 851 1.193203 GTGATGATGTTAGCCGATGCG 59.807 52.381 0.00 0.00 44.33 4.73
737 852 0.164647 GATGATGTTAGCCGATGCGC 59.835 55.000 0.00 0.00 44.33 6.09
740 855 1.227943 ATGTTAGCCGATGCGCCAT 60.228 52.632 4.18 0.00 44.33 4.40
741 856 1.509644 ATGTTAGCCGATGCGCCATG 61.510 55.000 4.18 0.00 44.33 3.66
743 858 3.755526 TTAGCCGATGCGCCATGCT 62.756 57.895 4.18 10.54 46.63 3.79
753 869 1.523258 CGCCATGCTCCCTTCTCAG 60.523 63.158 0.00 0.00 0.00 3.35
754 870 1.153005 GCCATGCTCCCTTCTCAGG 60.153 63.158 0.00 0.00 40.45 3.86
760 876 0.251634 GCTCCCTTCTCAGGTCTTGG 59.748 60.000 0.00 0.00 38.79 3.61
769 885 0.539669 TCAGGTCTTGGACGAGAGCA 60.540 55.000 18.11 0.00 44.50 4.26
776 892 2.202987 GGACGAGAGCAGGCATGG 60.203 66.667 0.00 0.00 0.00 3.66
782 898 1.673168 GAGAGCAGGCATGGGTTAAG 58.327 55.000 0.00 0.00 0.00 1.85
791 907 2.421529 GGCATGGGTTAAGAATCCGACT 60.422 50.000 0.00 0.00 0.00 4.18
799 915 6.154877 TGGGTTAAGAATCCGACTACACATAA 59.845 38.462 0.00 0.00 0.00 1.90
815 931 4.260985 CACATAAGGTGTTGTGCTGGATA 58.739 43.478 0.00 0.00 42.75 2.59
822 938 2.031157 GTGTTGTGCTGGATAACCACAC 60.031 50.000 13.91 13.91 41.77 3.82
824 940 0.321210 TGTGCTGGATAACCACACGG 60.321 55.000 15.03 0.00 43.83 4.94
834 950 3.353029 CCACACGGCGAACATGCA 61.353 61.111 16.62 0.00 36.28 3.96
850 966 6.733725 CGAACATGCACGCTTTATATATTCTG 59.266 38.462 0.00 0.00 0.00 3.02
881 1018 1.376037 GCCCAAACTCGAGACAGGG 60.376 63.158 25.91 25.91 39.33 4.45
891 1028 1.826024 GAGACAGGGACGCCATGAT 59.174 57.895 15.63 5.45 37.52 2.45
893 1030 0.977627 AGACAGGGACGCCATGATCA 60.978 55.000 15.63 0.00 37.52 2.92
938 1075 2.187946 CAGAGGCGGGGATGACAC 59.812 66.667 0.00 0.00 0.00 3.67
950 1087 1.671850 GGATGACACGACATCACCGTT 60.672 52.381 17.69 0.00 45.68 4.44
972 1109 2.968574 GGAGGAGAGATGTTAGGCATGA 59.031 50.000 0.00 0.00 38.06 3.07
984 1121 2.146061 GGCATGAGGAGGAGAGGGG 61.146 68.421 0.00 0.00 0.00 4.79
986 1123 2.146061 CATGAGGAGGAGAGGGGCC 61.146 68.421 0.00 0.00 0.00 5.80
987 1124 3.418623 ATGAGGAGGAGAGGGGCCC 62.419 68.421 17.12 17.12 0.00 5.80
988 1125 3.773154 GAGGAGGAGAGGGGCCCT 61.773 72.222 29.30 29.30 36.03 5.19
991 1128 2.041265 GAGGAGAGGGGCCCTGAA 59.959 66.667 34.51 0.00 31.76 3.02
992 1129 1.616628 GAGGAGAGGGGCCCTGAAA 60.617 63.158 34.51 0.00 31.76 2.69
993 1130 1.617839 AGGAGAGGGGCCCTGAAAG 60.618 63.158 34.51 0.00 31.76 2.62
995 1132 1.208165 GGAGAGGGGCCCTGAAAGAA 61.208 60.000 34.51 0.00 34.07 2.52
997 1134 0.701147 AGAGGGGCCCTGAAAGAAAG 59.299 55.000 34.51 0.00 34.07 2.62
1036 1173 3.954904 CGGAGGTTGAAGATAAGGAGAGA 59.045 47.826 0.00 0.00 0.00 3.10
1065 1202 2.682856 CGGAGAAGAGAGTCCAAGAGAG 59.317 54.545 0.00 0.00 32.55 3.20
1066 1203 3.621214 CGGAGAAGAGAGTCCAAGAGAGA 60.621 52.174 0.00 0.00 32.55 3.10
1091 1229 4.423625 CGGAGGTTAAGATGAAGGGAAT 57.576 45.455 0.00 0.00 0.00 3.01
1098 1236 5.590663 GGTTAAGATGAAGGGAATCCAACTC 59.409 44.000 0.09 0.00 34.83 3.01
1122 1260 1.207329 GAGACTGTTCAATAGCCGGGT 59.793 52.381 12.58 12.58 0.00 5.28
1130 1268 3.485463 TCAATAGCCGGGTCCAATTAG 57.515 47.619 10.79 0.42 0.00 1.73
1156 1295 0.893727 GGTTGATCCCCAAACACGCT 60.894 55.000 0.00 0.00 42.02 5.07
1176 1315 4.679654 CGCTGATTTGAAACCCTAAAACAC 59.320 41.667 0.00 0.00 0.00 3.32
1184 1323 0.935194 ACCCTAAAACACCCCCAACA 59.065 50.000 0.00 0.00 0.00 3.33
1218 1358 1.463528 CCTCGCTTTACTTTTTCGCCG 60.464 52.381 0.00 0.00 0.00 6.46
1222 1362 3.037324 CGCTTTACTTTTTCGCCGAAAA 58.963 40.909 20.14 20.14 39.36 2.29
1387 1528 2.755876 ACCTCGCCGAGATGCTCA 60.756 61.111 17.19 0.00 0.00 4.26
1486 1627 4.194720 CCGCGACCTCCCTCTTCG 62.195 72.222 8.23 0.00 35.82 3.79
1537 1678 2.251040 CGTATAGCTCGCGCATACATT 58.749 47.619 8.75 0.00 39.10 2.71
1539 1680 1.714794 ATAGCTCGCGCATACATTCC 58.285 50.000 8.75 0.00 39.10 3.01
1541 1682 0.179073 AGCTCGCGCATACATTCCTT 60.179 50.000 8.75 0.00 39.10 3.36
1543 1684 1.333258 GCTCGCGCATACATTCCTTTC 60.333 52.381 8.75 0.00 35.78 2.62
1544 1685 2.205074 CTCGCGCATACATTCCTTTCT 58.795 47.619 8.75 0.00 0.00 2.52
1547 1688 2.609459 CGCGCATACATTCCTTTCTTCT 59.391 45.455 8.75 0.00 0.00 2.85
1569 1710 7.562454 TCTTTCTGAATAACAAAGGTCGTTT 57.438 32.000 0.00 0.00 0.00 3.60
1604 1746 3.050275 GTGCGGCTGAGGTGTTCC 61.050 66.667 0.00 0.00 0.00 3.62
1704 1856 1.067693 TTGACGCGCAGAAGTATGTG 58.932 50.000 5.73 0.00 0.00 3.21
1707 1859 0.243907 ACGCGCAGAAGTATGTGACT 59.756 50.000 5.73 0.00 41.56 3.41
1816 1968 5.675684 TGCTGTCATGTTGGTATCTCTTA 57.324 39.130 0.00 0.00 0.00 2.10
1822 1974 8.078060 TGTCATGTTGGTATCTCTTAATCTGA 57.922 34.615 0.00 0.00 0.00 3.27
1834 1986 5.188555 TCTCTTAATCTGATGTTGGAGCACT 59.811 40.000 0.00 0.00 0.00 4.40
1835 1987 6.381133 TCTCTTAATCTGATGTTGGAGCACTA 59.619 38.462 0.00 0.00 0.00 2.74
1856 2008 7.039853 GCACTAAGTTACTACTTATAGGGAGGG 60.040 44.444 0.00 0.00 43.87 4.30
1967 2131 4.281941 AGCAAGTTGGAGATTTCCTTTTCC 59.718 41.667 4.75 0.00 44.36 3.13
1982 2146 4.221703 TCCTTTTCCTTTTGTGTGCTCAAA 59.778 37.500 0.00 0.00 35.83 2.69
2034 2201 3.885297 TCTTTCTTTTGCAGGAGAGGTTG 59.115 43.478 2.01 0.00 0.00 3.77
2103 2270 5.116882 GGTACTTGACTTGTTCACTCTTGT 58.883 41.667 0.00 0.00 32.26 3.16
2256 2426 2.489971 TCGTTGTCCCATTTGACAGAC 58.510 47.619 0.00 0.00 45.37 3.51
2266 2436 7.159372 GTCCCATTTGACAGACGGTATATAAT 58.841 38.462 0.00 0.00 35.29 1.28
2327 2497 7.278868 GGTATAGAGTTGTGGTTCTGATTCTTG 59.721 40.741 0.00 0.00 0.00 3.02
2347 2517 6.884832 TCTTGTTACTTTCAGACCAGAAGAA 58.115 36.000 0.00 0.00 0.00 2.52
2469 2639 0.680280 AGAGTTCCTCGCGAAGGCTA 60.680 55.000 11.33 3.04 45.78 3.93
2523 2693 2.570302 GTGAAGGGCCCTGTTAGAACTA 59.430 50.000 29.50 0.77 0.00 2.24
2526 2696 4.080526 TGAAGGGCCCTGTTAGAACTATTC 60.081 45.833 29.50 15.15 0.00 1.75
2675 2845 5.796424 ATGTTTGATGCAAGTCCTTTCTT 57.204 34.783 0.00 0.00 0.00 2.52
2681 2851 1.587043 GCAAGTCCTTTCTTCCGGGC 61.587 60.000 0.00 0.00 0.00 6.13
2890 3060 4.518211 ACAGAGCAGTTCCTCAATGAAAAG 59.482 41.667 0.00 0.00 34.26 2.27
2962 3133 1.612199 GGAAGTAACGGACCAATGCCA 60.612 52.381 0.00 0.00 0.00 4.92
3028 3199 5.952347 AGAGAAGGTTTCAAACTTCAAAGGT 59.048 36.000 17.61 0.00 44.20 3.50
3069 3240 0.953471 AACAAGATGCGCGGCAGTTA 60.953 50.000 8.83 0.00 43.65 2.24
3201 3373 3.316029 TGAGTGGCTTGAGTTGATTGTTG 59.684 43.478 0.00 0.00 0.00 3.33
3237 3409 7.310052 GGCTTAGGATTTTCTTGGAGTTCAAAT 60.310 37.037 0.00 0.00 34.56 2.32
3276 3448 3.666345 ACCCCTCTTGATAGTACGACT 57.334 47.619 0.00 0.00 0.00 4.18
3295 3467 4.201970 CGACTTCCCTACACTCTGAATCTC 60.202 50.000 0.00 0.00 0.00 2.75
3300 3472 3.067461 CCCTACACTCTGAATCTCGGAAG 59.933 52.174 0.00 0.00 30.21 3.46
3359 3531 3.691342 CCTTCCGCCGACTCACCA 61.691 66.667 0.00 0.00 0.00 4.17
3405 3577 6.542370 TGCCAAAACTCATCTAAGCTAATACC 59.458 38.462 0.00 0.00 0.00 2.73
3412 3585 8.461249 ACTCATCTAAGCTAATACCGAGTAAA 57.539 34.615 0.00 0.00 29.82 2.01
3527 3700 0.463833 GATCTCCGGTGGCGGATTTT 60.464 55.000 0.00 0.00 37.43 1.82
3544 3717 4.142271 GGATTTTGTGTCACTCAACCAACA 60.142 41.667 4.27 0.00 0.00 3.33
3600 3773 4.039245 CCACCAGTCAAGACTCAACTAAGA 59.961 45.833 0.00 0.00 40.20 2.10
3601 3774 5.279708 CCACCAGTCAAGACTCAACTAAGAT 60.280 44.000 0.00 0.00 40.20 2.40
3602 3775 6.071334 CCACCAGTCAAGACTCAACTAAGATA 60.071 42.308 0.00 0.00 40.20 1.98
3632 3805 5.596845 TGTGGCTTTTGAGTAAACCAAATC 58.403 37.500 0.00 0.00 34.02 2.17
3653 3826 8.456471 CAAATCTGATCTTATTTCTTGTGCTGA 58.544 33.333 0.00 0.00 0.00 4.26
3659 3832 1.985473 ATTTCTTGTGCTGAGTGGCA 58.015 45.000 0.00 0.00 40.15 4.92
3663 3836 1.625315 TCTTGTGCTGAGTGGCATAGT 59.375 47.619 0.00 0.00 44.34 2.12
3664 3837 1.736126 CTTGTGCTGAGTGGCATAGTG 59.264 52.381 0.00 0.00 44.34 2.74
3751 3925 2.030946 GCGTCACTCAATAACCTCATGC 59.969 50.000 0.00 0.00 0.00 4.06
3775 3949 4.536090 TGTCTCCCACCAGTAATCTCATTT 59.464 41.667 0.00 0.00 0.00 2.32
3787 3961 6.199154 CAGTAATCTCATTTGTACCAGCTACG 59.801 42.308 0.00 0.00 0.00 3.51
3788 3962 3.520290 TCTCATTTGTACCAGCTACGG 57.480 47.619 0.00 0.00 0.00 4.02
3943 4118 3.640407 GAGGCCTGGGTGCTGTGA 61.640 66.667 12.00 0.00 0.00 3.58
3991 4166 4.398319 AGTAGATGGTTGTGGAAAGTTGG 58.602 43.478 0.00 0.00 0.00 3.77
4148 4325 8.608185 AAAAATTGGTATGAACATGGGACTAT 57.392 30.769 0.00 0.00 0.00 2.12
4170 4347 7.901322 ACTATATTCTGGGAAGATGTATGGCTA 59.099 37.037 0.00 0.00 0.00 3.93
4220 4397 6.615264 CAGACTTTATAATCTGTGCAGCAT 57.385 37.500 0.00 0.00 38.03 3.79
4240 4417 8.642020 GCAGCATTAGAAATGTAAAAGTTTCTG 58.358 33.333 9.83 0.00 42.76 3.02
4275 4452 6.721318 TGATGGATGGACTAGCTTTAGTTTT 58.279 36.000 0.00 0.00 0.00 2.43
4278 4455 6.650120 TGGATGGACTAGCTTTAGTTTTAGG 58.350 40.000 0.00 0.00 0.00 2.69
4280 4457 7.037873 TGGATGGACTAGCTTTAGTTTTAGGAA 60.038 37.037 0.00 0.00 0.00 3.36
4449 4626 1.834263 GCTAGACAAGTCCCATGTCCT 59.166 52.381 0.00 0.00 46.60 3.85
4464 4641 5.538433 CCCATGTCCTTTTTAGGAAACTTCA 59.462 40.000 0.00 0.00 43.67 3.02
4514 4695 1.200948 GAATTGCTCTTGTGGCTGGTC 59.799 52.381 0.00 0.00 0.00 4.02
4528 4719 3.844211 TGGCTGGTCAGTAGGAAAAGTAT 59.156 43.478 0.00 0.00 0.00 2.12
4529 4720 4.288626 TGGCTGGTCAGTAGGAAAAGTATT 59.711 41.667 0.00 0.00 0.00 1.89
4530 4721 5.222048 TGGCTGGTCAGTAGGAAAAGTATTT 60.222 40.000 0.00 0.00 42.41 1.40
4549 4740 7.425606 AGTATTTTGACAAAGGATGTTGTGTC 58.574 34.615 0.10 0.00 44.12 3.67
4552 4743 4.834357 TGACAAAGGATGTTGTGTCATG 57.166 40.909 1.37 0.00 44.02 3.07
4554 4745 4.036616 TGACAAAGGATGTTGTGTCATGTG 59.963 41.667 1.37 0.00 44.02 3.21
4625 4840 2.492088 GGGGATTGTTCTTTCCTTTCCG 59.508 50.000 0.00 0.00 32.34 4.30
4691 4906 2.840651 ACCTCAGAAAGTGATTCCCGAT 59.159 45.455 0.00 0.00 38.94 4.18
4702 4917 2.006888 GATTCCCGATTCGTTTGCTGA 58.993 47.619 5.20 0.00 0.00 4.26
4705 4920 0.657840 CCCGATTCGTTTGCTGATCC 59.342 55.000 5.20 0.00 0.00 3.36
4708 4923 2.270923 CGATTCGTTTGCTGATCCAGA 58.729 47.619 0.00 0.00 32.44 3.86
4747 4962 3.837213 TCCTGTTAGTCGTCGTAAAGG 57.163 47.619 0.00 0.00 0.00 3.11
4763 4978 3.443045 GGTGTGATTGCCTGCGGG 61.443 66.667 7.41 7.41 0.00 6.13
4928 5300 5.590259 CCCTTTTAGTATCTCACACATTGGG 59.410 44.000 0.00 0.00 0.00 4.12
4930 5302 6.659242 CCTTTTAGTATCTCACACATTGGGTT 59.341 38.462 0.00 0.00 0.00 4.11
4960 5338 2.205022 TGGTCTGGATTGCAGGAAAG 57.795 50.000 5.27 0.00 0.00 2.62
4968 5346 2.620108 GGATTGCAGGAAAGAGGAGCTT 60.620 50.000 0.00 0.00 38.88 3.74
4983 5361 1.226018 GCTTGGAAAATCCGTCGCG 60.226 57.895 0.00 0.00 40.17 5.87
4984 5362 1.632046 GCTTGGAAAATCCGTCGCGA 61.632 55.000 3.71 3.71 40.17 5.87
5010 5392 0.322008 GGCAAGTCTTCTGGTCCTGG 60.322 60.000 0.00 0.00 0.00 4.45
5028 5410 0.316196 GGCGGCGAATGATTTCTTCG 60.316 55.000 12.98 1.34 46.22 3.79
5122 5504 5.502153 AAGTCTCGTTAGCTGTATGTAGG 57.498 43.478 0.00 0.00 0.00 3.18
5183 5565 5.673337 TCGTTTTGAGATGTTTGGAAGAG 57.327 39.130 0.00 0.00 0.00 2.85
5189 5571 9.399403 GTTTTGAGATGTTTGGAAGAGTAATTC 57.601 33.333 0.00 0.00 0.00 2.17
5243 5626 6.566753 GCACTTTTGTTACTCATCTGAGGTTC 60.567 42.308 11.66 2.47 46.13 3.62
5245 5628 6.931840 ACTTTTGTTACTCATCTGAGGTTCTC 59.068 38.462 11.66 0.00 46.13 2.87
5247 5632 6.611613 TTGTTACTCATCTGAGGTTCTCAT 57.388 37.500 11.66 0.00 46.13 2.90
5250 5635 2.836372 ACTCATCTGAGGTTCTCATGCA 59.164 45.455 11.66 0.00 46.13 3.96
5255 5640 3.340928 TCTGAGGTTCTCATGCATGTTG 58.659 45.455 25.43 18.71 39.92 3.33
5256 5641 3.079578 CTGAGGTTCTCATGCATGTTGT 58.920 45.455 25.43 6.52 39.92 3.32
5257 5642 3.076621 TGAGGTTCTCATGCATGTTGTC 58.923 45.455 25.43 14.58 35.39 3.18
5258 5643 3.076621 GAGGTTCTCATGCATGTTGTCA 58.923 45.455 25.43 5.72 0.00 3.58
5259 5644 3.489355 AGGTTCTCATGCATGTTGTCAA 58.511 40.909 25.43 9.86 0.00 3.18
5260 5645 3.890756 AGGTTCTCATGCATGTTGTCAAA 59.109 39.130 25.43 9.62 0.00 2.69
5261 5646 4.525487 AGGTTCTCATGCATGTTGTCAAAT 59.475 37.500 25.43 4.66 0.00 2.32
5262 5647 4.624024 GGTTCTCATGCATGTTGTCAAATG 59.376 41.667 25.43 0.00 0.00 2.32
5267 5652 2.443887 GCATGTTGTCAAATGCTGGT 57.556 45.000 17.96 0.00 44.64 4.00
5268 5653 2.331194 GCATGTTGTCAAATGCTGGTC 58.669 47.619 17.96 0.00 44.64 4.02
5269 5654 2.927871 GCATGTTGTCAAATGCTGGTCC 60.928 50.000 17.96 0.00 44.64 4.46
5270 5655 1.327303 TGTTGTCAAATGCTGGTCCC 58.673 50.000 0.00 0.00 0.00 4.46
5272 5657 1.895131 GTTGTCAAATGCTGGTCCCAT 59.105 47.619 0.00 0.00 0.00 4.00
5273 5658 2.299867 GTTGTCAAATGCTGGTCCCATT 59.700 45.455 0.00 0.00 34.56 3.16
5274 5659 2.607499 TGTCAAATGCTGGTCCCATTT 58.393 42.857 1.40 1.40 42.02 2.32
5280 5665 0.469705 TGCTGGTCCCATTTGTGCTT 60.470 50.000 0.00 0.00 0.00 3.91
5281 5666 1.202989 TGCTGGTCCCATTTGTGCTTA 60.203 47.619 0.00 0.00 0.00 3.09
5282 5667 2.102578 GCTGGTCCCATTTGTGCTTAT 58.897 47.619 0.00 0.00 0.00 1.73
5283 5668 2.159198 GCTGGTCCCATTTGTGCTTATG 60.159 50.000 0.00 0.00 0.00 1.90
5284 5669 3.091545 CTGGTCCCATTTGTGCTTATGT 58.908 45.455 0.00 0.00 0.00 2.29
5285 5670 3.505386 TGGTCCCATTTGTGCTTATGTT 58.495 40.909 0.00 0.00 0.00 2.71
5287 5672 5.080337 TGGTCCCATTTGTGCTTATGTTTA 58.920 37.500 0.00 0.00 0.00 2.01
5288 5673 5.719085 TGGTCCCATTTGTGCTTATGTTTAT 59.281 36.000 0.00 0.00 0.00 1.40
5290 5675 7.102993 GGTCCCATTTGTGCTTATGTTTATTT 58.897 34.615 0.00 0.00 0.00 1.40
5291 5676 7.606073 GGTCCCATTTGTGCTTATGTTTATTTT 59.394 33.333 0.00 0.00 0.00 1.82
5328 5713 7.742525 TGTTGTGATTATGTTTATGTTTCGACG 59.257 33.333 0.00 0.00 0.00 5.12
5329 5714 7.583860 TGTGATTATGTTTATGTTTCGACGA 57.416 32.000 0.00 0.00 0.00 4.20
5331 5716 8.325282 TGTGATTATGTTTATGTTTCGACGATC 58.675 33.333 0.00 0.00 0.00 3.69
5333 5718 7.709182 TGATTATGTTTATGTTTCGACGATCCT 59.291 33.333 0.00 0.00 0.00 3.24
5334 5719 5.718649 ATGTTTATGTTTCGACGATCCTG 57.281 39.130 0.00 0.00 0.00 3.86
5339 7840 0.716108 GTTTCGACGATCCTGCTGTG 59.284 55.000 0.00 0.00 0.00 3.66
5377 7878 2.025981 AGTCAGCATGCACTTGGGAATA 60.026 45.455 21.98 0.00 34.76 1.75
5378 7879 2.098117 GTCAGCATGCACTTGGGAATAC 59.902 50.000 21.98 0.00 34.76 1.89
5379 7880 1.406539 CAGCATGCACTTGGGAATACC 59.593 52.381 21.98 0.00 40.81 2.73
5381 7882 1.406539 GCATGCACTTGGGAATACCTG 59.593 52.381 14.21 0.00 41.11 4.00
5382 7883 2.945440 GCATGCACTTGGGAATACCTGA 60.945 50.000 14.21 0.00 41.11 3.86
5384 7886 4.717877 CATGCACTTGGGAATACCTGATA 58.282 43.478 0.00 0.00 41.11 2.15
5388 7891 4.141711 GCACTTGGGAATACCTGATAGTGA 60.142 45.833 9.62 0.00 41.11 3.41
5390 7893 6.239600 GCACTTGGGAATACCTGATAGTGATA 60.240 42.308 9.62 0.00 41.11 2.15
5391 7894 7.155328 CACTTGGGAATACCTGATAGTGATAC 58.845 42.308 0.00 0.00 41.11 2.24
5397 7900 8.334734 GGGAATACCTGATAGTGATACTACCTA 58.665 40.741 0.00 0.00 32.60 3.08
5412 7915 5.099042 ACTACCTATGAGAAATGGCGTTT 57.901 39.130 3.95 3.95 0.00 3.60
5418 7921 7.280356 ACCTATGAGAAATGGCGTTTAAGTAT 58.720 34.615 4.35 1.11 0.00 2.12
5419 7922 7.226720 ACCTATGAGAAATGGCGTTTAAGTATG 59.773 37.037 4.35 0.00 0.00 2.39
5420 7923 5.229921 TGAGAAATGGCGTTTAAGTATGC 57.770 39.130 4.35 0.00 0.00 3.14
5426 7929 6.633500 AATGGCGTTTAAGTATGCATACAT 57.367 33.333 32.69 25.51 40.49 2.29
5450 7955 5.178061 ACACGCACATCATCTAAGAAATGA 58.822 37.500 0.00 0.00 37.53 2.57
5461 7966 5.028549 TCTAAGAAATGATGAGGCTGGAC 57.971 43.478 0.00 0.00 0.00 4.02
5463 7968 1.556911 AGAAATGATGAGGCTGGACGT 59.443 47.619 0.00 0.00 0.00 4.34
5464 7969 2.766263 AGAAATGATGAGGCTGGACGTA 59.234 45.455 0.00 0.00 0.00 3.57
5465 7970 3.197766 AGAAATGATGAGGCTGGACGTAA 59.802 43.478 0.00 0.00 0.00 3.18
5474 8104 4.192317 GAGGCTGGACGTAAATTTCTGAT 58.808 43.478 0.00 0.00 0.00 2.90
5485 8115 6.823182 ACGTAAATTTCTGATGGTGATGATGA 59.177 34.615 0.00 0.00 0.00 2.92
5505 8135 9.809096 ATGATGAATTAATAGTACATAGCGAGG 57.191 33.333 0.00 0.00 0.00 4.63
5515 8154 6.102897 AGTACATAGCGAGGCTGAATAATT 57.897 37.500 0.00 0.00 40.10 1.40
5524 8163 4.330074 CGAGGCTGAATAATTCGACTGTTT 59.670 41.667 0.00 0.00 33.38 2.83
5526 8165 6.035650 CGAGGCTGAATAATTCGACTGTTTTA 59.964 38.462 0.00 0.00 33.38 1.52
5529 8168 9.561069 AGGCTGAATAATTCGACTGTTTTATAT 57.439 29.630 0.00 0.00 0.00 0.86
5555 8197 8.743085 ACAGTTCATAATAATCATGCTTCAGT 57.257 30.769 0.00 0.00 0.00 3.41
5556 8198 9.182214 ACAGTTCATAATAATCATGCTTCAGTT 57.818 29.630 0.00 0.00 0.00 3.16
5557 8199 9.661187 CAGTTCATAATAATCATGCTTCAGTTC 57.339 33.333 0.00 0.00 0.00 3.01
5558 8200 8.554528 AGTTCATAATAATCATGCTTCAGTTCG 58.445 33.333 0.00 0.00 0.00 3.95
5559 8201 8.338259 GTTCATAATAATCATGCTTCAGTTCGT 58.662 33.333 0.00 0.00 0.00 3.85
5560 8202 8.437360 TCATAATAATCATGCTTCAGTTCGTT 57.563 30.769 0.00 0.00 0.00 3.85
5561 8203 8.551205 TCATAATAATCATGCTTCAGTTCGTTC 58.449 33.333 0.00 0.00 0.00 3.95
5562 8204 6.741992 AATAATCATGCTTCAGTTCGTTCA 57.258 33.333 0.00 0.00 0.00 3.18
5563 8205 4.410492 AATCATGCTTCAGTTCGTTCAC 57.590 40.909 0.00 0.00 0.00 3.18
5564 8206 2.832563 TCATGCTTCAGTTCGTTCACA 58.167 42.857 0.00 0.00 0.00 3.58
5565 8207 2.802247 TCATGCTTCAGTTCGTTCACAG 59.198 45.455 0.00 0.00 0.00 3.66
5566 8208 2.595124 TGCTTCAGTTCGTTCACAGA 57.405 45.000 0.00 0.00 0.00 3.41
5567 8209 2.473816 TGCTTCAGTTCGTTCACAGAG 58.526 47.619 0.00 0.00 0.00 3.35
5624 8278 2.124860 GGGGTCGAACGGGAATGG 60.125 66.667 0.00 0.00 0.00 3.16
5625 8279 2.822701 GGGTCGAACGGGAATGGC 60.823 66.667 0.00 0.00 0.00 4.40
5626 8280 2.046700 GGTCGAACGGGAATGGCA 60.047 61.111 0.00 0.00 0.00 4.92
5652 8306 3.479269 GCGTACTGGTCGTGCTGC 61.479 66.667 0.00 0.00 0.00 5.25
5666 8320 4.393155 CTGCTGCAGGCCGTGGTA 62.393 66.667 21.71 0.00 40.92 3.25
5667 8321 4.697756 TGCTGCAGGCCGTGGTAC 62.698 66.667 17.12 0.00 40.92 3.34
5668 8322 4.394712 GCTGCAGGCCGTGGTACT 62.395 66.667 17.12 0.00 34.27 2.73
5669 8323 2.434884 CTGCAGGCCGTGGTACTG 60.435 66.667 5.57 7.95 35.40 2.74
5694 8348 2.278013 GAGTAGTCGAAGCCGGCG 60.278 66.667 23.20 7.22 46.52 6.46
5953 8607 4.738998 TGCCGTGGCCATGGAAGG 62.739 66.667 42.54 24.69 39.90 3.46
6237 8891 0.525761 GGTACGTGCACCGGTAGTAA 59.474 55.000 6.87 0.00 42.24 2.24
6284 8938 0.169230 ATCGTCGTCTCAGTCAGTGC 59.831 55.000 0.00 0.00 0.00 4.40
6291 8945 1.599542 GTCTCAGTCAGTGCCACAAAC 59.400 52.381 0.00 0.00 0.00 2.93
6311 8965 3.340814 CCAGAAGCTGGTCAATACTGT 57.659 47.619 5.31 0.00 45.82 3.55
6312 8966 3.265791 CCAGAAGCTGGTCAATACTGTC 58.734 50.000 5.31 0.00 45.82 3.51
6313 8967 3.055530 CCAGAAGCTGGTCAATACTGTCT 60.056 47.826 5.31 0.00 45.82 3.41
6314 8968 4.180057 CAGAAGCTGGTCAATACTGTCTC 58.820 47.826 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.659172 TGCGGTTGGGAGCCAAGG 62.659 66.667 0.00 0.00 44.82 3.61
41 42 2.887568 CATGTCTGGGCTCGCGAC 60.888 66.667 3.71 1.87 0.00 5.19
43 44 2.887568 GACATGTCTGGGCTCGCG 60.888 66.667 18.83 0.00 0.00 5.87
53 54 3.930336 TCAAGATCACCACAGACATGTC 58.070 45.455 18.47 18.47 37.65 3.06
56 57 3.055530 GTCCTCAAGATCACCACAGACAT 60.056 47.826 0.00 0.00 0.00 3.06
59 60 1.902508 GGTCCTCAAGATCACCACAGA 59.097 52.381 0.00 0.00 0.00 3.41
128 131 3.537206 AAGTGCGACAGGTGGGCTC 62.537 63.158 0.00 0.00 0.00 4.70
139 142 4.212004 GCTATGCATAATCTTCAAGTGCGA 59.788 41.667 8.00 0.00 38.58 5.10
141 144 5.210715 GTGCTATGCATAATCTTCAAGTGC 58.789 41.667 8.00 4.26 41.91 4.40
142 145 6.367686 TGTGCTATGCATAATCTTCAAGTG 57.632 37.500 8.00 0.00 41.91 3.16
143 146 6.544931 ACATGTGCTATGCATAATCTTCAAGT 59.455 34.615 8.00 4.09 41.91 3.16
144 147 6.967135 ACATGTGCTATGCATAATCTTCAAG 58.033 36.000 8.00 0.00 41.91 3.02
145 148 6.947644 ACATGTGCTATGCATAATCTTCAA 57.052 33.333 8.00 0.00 41.91 2.69
146 149 6.293027 CGAACATGTGCTATGCATAATCTTCA 60.293 38.462 8.00 3.96 41.91 3.02
147 150 6.073602 TCGAACATGTGCTATGCATAATCTTC 60.074 38.462 8.00 1.70 41.91 2.87
148 151 5.759763 TCGAACATGTGCTATGCATAATCTT 59.240 36.000 8.00 0.00 41.91 2.40
149 152 5.178252 GTCGAACATGTGCTATGCATAATCT 59.822 40.000 8.00 0.00 41.91 2.40
150 153 5.377358 GTCGAACATGTGCTATGCATAATC 58.623 41.667 8.00 3.47 41.91 1.75
151 154 4.214119 GGTCGAACATGTGCTATGCATAAT 59.786 41.667 8.00 0.00 41.91 1.28
152 155 3.559655 GGTCGAACATGTGCTATGCATAA 59.440 43.478 8.00 0.00 41.91 1.90
153 156 3.130633 GGTCGAACATGTGCTATGCATA 58.869 45.455 6.20 6.20 41.91 3.14
154 157 1.942657 GGTCGAACATGTGCTATGCAT 59.057 47.619 3.79 3.79 41.91 3.96
155 158 1.338579 TGGTCGAACATGTGCTATGCA 60.339 47.619 0.00 0.00 35.60 3.96
156 159 1.368641 TGGTCGAACATGTGCTATGC 58.631 50.000 0.00 0.00 0.00 3.14
157 160 4.345288 CATTTGGTCGAACATGTGCTATG 58.655 43.478 2.76 0.00 0.00 2.23
158 161 3.181497 GCATTTGGTCGAACATGTGCTAT 60.181 43.478 24.89 3.88 32.05 2.97
159 162 2.161410 GCATTTGGTCGAACATGTGCTA 59.839 45.455 24.89 0.00 32.05 3.49
160 163 1.068333 GCATTTGGTCGAACATGTGCT 60.068 47.619 24.89 0.25 32.05 4.40
161 164 1.335780 TGCATTTGGTCGAACATGTGC 60.336 47.619 25.23 25.23 34.01 4.57
162 165 2.318578 GTGCATTTGGTCGAACATGTG 58.681 47.619 2.76 7.65 0.00 3.21
172 175 2.796483 TAGGCGCTCGTGCATTTGGT 62.796 55.000 7.64 0.00 39.64 3.67
203 206 5.375417 TCGATGAGTCATTGCACAATTTT 57.625 34.783 14.72 0.00 0.00 1.82
233 236 5.574830 CCATGATTTAATTCACGCGGAAAAA 59.425 36.000 12.47 9.85 39.39 1.94
238 241 2.616376 TCCCATGATTTAATTCACGCGG 59.384 45.455 12.47 0.00 0.00 6.46
239 242 3.961477 TCCCATGATTTAATTCACGCG 57.039 42.857 3.53 3.53 0.00 6.01
251 254 2.104967 CACAATGGCACTTCCCATGAT 58.895 47.619 0.00 0.00 44.68 2.45
321 325 6.481643 TCTAAGATTGTTAAACTTCAGGGGG 58.518 40.000 0.00 0.00 0.00 5.40
324 328 9.678941 GGTTTTCTAAGATTGTTAAACTTCAGG 57.321 33.333 0.00 0.00 0.00 3.86
336 433 8.437742 GTGCAATGAATTGGTTTTCTAAGATTG 58.562 33.333 5.25 0.00 38.21 2.67
340 437 6.088085 GTCGTGCAATGAATTGGTTTTCTAAG 59.912 38.462 5.25 0.00 38.21 2.18
361 458 3.244422 ACAACTAATGATGTGGTGGTCGT 60.244 43.478 0.00 0.00 0.00 4.34
364 461 4.098914 ACACAACTAATGATGTGGTGGT 57.901 40.909 10.29 0.00 46.80 4.16
366 463 6.029607 GCAATACACAACTAATGATGTGGTG 58.970 40.000 10.29 0.00 46.80 4.17
367 464 5.125417 GGCAATACACAACTAATGATGTGGT 59.875 40.000 10.29 0.11 46.80 4.16
377 474 5.765677 TGCAAAGTTAGGCAATACACAACTA 59.234 36.000 0.01 0.00 37.03 2.24
381 478 4.617995 GCATGCAAAGTTAGGCAATACACA 60.618 41.667 14.21 0.00 44.20 3.72
382 479 3.859386 GCATGCAAAGTTAGGCAATACAC 59.141 43.478 14.21 0.00 44.20 2.90
386 483 1.207811 GGGCATGCAAAGTTAGGCAAT 59.792 47.619 21.36 0.00 44.20 3.56
390 487 2.036992 TGTTTGGGCATGCAAAGTTAGG 59.963 45.455 21.36 0.00 0.00 2.69
401 499 0.760189 ACCAGCAACTGTTTGGGCAT 60.760 50.000 14.09 0.00 36.28 4.40
406 504 4.630894 TGTAGAAACCAGCAACTGTTTG 57.369 40.909 0.00 0.00 35.62 2.93
419 517 7.884257 ACTGAGACCTACTAAGTTGTAGAAAC 58.116 38.462 11.69 0.00 37.00 2.78
443 542 2.666508 CAGCCGTGATGTGTTACACTAC 59.333 50.000 16.79 11.44 35.11 2.73
449 548 0.953471 GCCACAGCCGTGATGTGTTA 60.953 55.000 17.11 0.00 46.75 2.41
453 552 2.112928 TTGCCACAGCCGTGATGT 59.887 55.556 0.37 0.00 46.80 3.06
492 591 6.639632 AACTGACAACTGCACAATAGAATT 57.360 33.333 0.00 0.00 0.00 2.17
495 594 6.765989 ACTAAAACTGACAACTGCACAATAGA 59.234 34.615 0.00 0.00 0.00 1.98
500 599 5.637006 AAACTAAAACTGACAACTGCACA 57.363 34.783 0.00 0.00 0.00 4.57
507 606 9.862371 TTAATCTGCAAAAACTAAAACTGACAA 57.138 25.926 0.00 0.00 0.00 3.18
518 617 9.559958 CACGAAATAGATTAATCTGCAAAAACT 57.440 29.630 25.22 1.22 37.76 2.66
519 618 8.313931 GCACGAAATAGATTAATCTGCAAAAAC 58.686 33.333 25.22 10.54 37.76 2.43
528 627 8.032952 TCCATCATGCACGAAATAGATTAATC 57.967 34.615 7.41 7.41 0.00 1.75
533 632 6.939622 TCTATCCATCATGCACGAAATAGAT 58.060 36.000 8.12 2.21 0.00 1.98
543 642 1.516161 GCGCTTCTATCCATCATGCA 58.484 50.000 0.00 0.00 0.00 3.96
549 648 1.668294 CTCGGGCGCTTCTATCCAT 59.332 57.895 7.64 0.00 0.00 3.41
552 651 2.340443 CCCTCGGGCGCTTCTATC 59.660 66.667 7.64 0.00 0.00 2.08
569 668 1.446272 CCACGACCCTTTCTCTCGC 60.446 63.158 0.00 0.00 0.00 5.03
583 682 3.521308 GACGCAGCAACCAACCACG 62.521 63.158 0.00 0.00 0.00 4.94
596 695 1.450134 GTGGCATCATCAGGACGCA 60.450 57.895 0.00 0.00 0.00 5.24
602 701 2.118313 TCTTGGTGTGGCATCATCAG 57.882 50.000 0.00 0.00 29.85 2.90
603 702 2.756207 CAATCTTGGTGTGGCATCATCA 59.244 45.455 0.00 0.00 0.00 3.07
606 705 0.889994 GCAATCTTGGTGTGGCATCA 59.110 50.000 0.00 0.00 0.00 3.07
616 715 1.000521 TGCCTCCCTGCAATCTTGG 60.001 57.895 0.00 0.00 38.56 3.61
621 720 2.362120 GCACTGCCTCCCTGCAAT 60.362 61.111 0.00 0.00 41.51 3.56
648 747 0.249398 CCCTTTGCTACGCCTACACT 59.751 55.000 0.00 0.00 0.00 3.55
662 761 1.569072 ACCTGAACCTGTCAACCCTTT 59.431 47.619 0.00 0.00 35.22 3.11
663 762 1.133792 CACCTGAACCTGTCAACCCTT 60.134 52.381 0.00 0.00 35.22 3.95
666 765 0.537371 CCCACCTGAACCTGTCAACC 60.537 60.000 0.00 0.00 35.22 3.77
673 772 0.701310 AAGTTCCCCCACCTGAACCT 60.701 55.000 0.00 0.00 41.36 3.50
685 784 4.141824 TGGTGTCCAAATGAAAAAGTTCCC 60.142 41.667 0.00 0.00 32.28 3.97
686 785 4.808895 GTGGTGTCCAAATGAAAAAGTTCC 59.191 41.667 0.00 0.00 34.18 3.62
687 786 5.660460 AGTGGTGTCCAAATGAAAAAGTTC 58.340 37.500 0.00 0.00 34.18 3.01
688 787 5.675684 AGTGGTGTCCAAATGAAAAAGTT 57.324 34.783 0.00 0.00 34.18 2.66
689 788 6.549364 TGATAGTGGTGTCCAAATGAAAAAGT 59.451 34.615 0.00 0.00 34.18 2.66
690 789 6.863126 GTGATAGTGGTGTCCAAATGAAAAAG 59.137 38.462 0.00 0.00 34.18 2.27
714 829 2.473816 CATCGGCTAACATCATCACGT 58.526 47.619 0.00 0.00 0.00 4.49
717 832 1.501169 CGCATCGGCTAACATCATCA 58.499 50.000 0.00 0.00 38.10 3.07
736 851 1.153005 CCTGAGAAGGGAGCATGGC 60.153 63.158 0.00 0.00 0.00 4.40
737 852 0.179936 GACCTGAGAAGGGAGCATGG 59.820 60.000 0.00 0.00 0.00 3.66
740 855 0.979665 CAAGACCTGAGAAGGGAGCA 59.020 55.000 0.00 0.00 0.00 4.26
741 856 0.251634 CCAAGACCTGAGAAGGGAGC 59.748 60.000 0.00 0.00 0.00 4.70
743 858 1.645710 GTCCAAGACCTGAGAAGGGA 58.354 55.000 0.00 0.00 0.00 4.20
746 861 2.163412 CTCTCGTCCAAGACCTGAGAAG 59.837 54.545 6.02 0.00 32.03 2.85
753 869 1.216710 CCTGCTCTCGTCCAAGACC 59.783 63.158 0.00 0.00 0.00 3.85
754 870 1.446966 GCCTGCTCTCGTCCAAGAC 60.447 63.158 0.00 0.00 0.00 3.01
760 876 2.202987 CCCATGCCTGCTCTCGTC 60.203 66.667 0.00 0.00 0.00 4.20
769 885 1.843851 TCGGATTCTTAACCCATGCCT 59.156 47.619 0.00 0.00 0.00 4.75
776 892 6.700520 CCTTATGTGTAGTCGGATTCTTAACC 59.299 42.308 0.00 0.00 0.00 2.85
799 915 1.423541 TGGTTATCCAGCACAACACCT 59.576 47.619 0.00 0.00 39.03 4.00
809 925 0.390603 TTCGCCGTGTGGTTATCCAG 60.391 55.000 0.00 0.00 45.24 3.86
815 931 2.903547 GCATGTTCGCCGTGTGGTT 61.904 57.895 0.00 0.00 37.67 3.67
846 962 1.270041 GGGCGCCAAAATGAAACAGAA 60.270 47.619 30.85 0.00 0.00 3.02
850 966 3.297391 TTGGGCGCCAAAATGAAAC 57.703 47.368 30.85 7.78 40.92 2.78
860 976 3.119096 GTCTCGAGTTTGGGCGCC 61.119 66.667 21.18 21.18 0.00 6.53
862 978 1.738099 CCTGTCTCGAGTTTGGGCG 60.738 63.158 13.13 0.00 0.00 6.13
863 979 1.376037 CCCTGTCTCGAGTTTGGGC 60.376 63.158 20.10 0.00 0.00 5.36
881 1018 2.580470 CGCGTCTGATCATGGCGTC 61.580 63.158 20.44 12.18 41.75 5.19
933 1070 0.598942 CCAACGGTGATGTCGTGTCA 60.599 55.000 0.00 0.00 40.96 3.58
938 1075 0.458543 CTCCTCCAACGGTGATGTCG 60.459 60.000 0.00 0.00 0.00 4.35
950 1087 2.550277 TGCCTAACATCTCTCCTCCA 57.450 50.000 0.00 0.00 0.00 3.86
972 1109 4.101077 CAGGGCCCCTCTCCTCCT 62.101 72.222 21.43 0.00 0.00 3.69
1005 1142 0.472471 TTCAACCTCCGCCTTCTGTT 59.528 50.000 0.00 0.00 0.00 3.16
1014 1151 3.954904 TCTCTCCTTATCTTCAACCTCCG 59.045 47.826 0.00 0.00 0.00 4.63
1036 1173 0.605589 CTCTCTTCTCCGCACCTTGT 59.394 55.000 0.00 0.00 0.00 3.16
1065 1202 3.939592 CCTTCATCTTAACCTCCGGTTTC 59.060 47.826 0.00 0.00 44.33 2.78
1066 1203 3.308188 CCCTTCATCTTAACCTCCGGTTT 60.308 47.826 0.00 0.00 44.33 3.27
1098 1236 2.796383 CGGCTATTGAACAGTCTCGGAG 60.796 54.545 0.00 0.00 0.00 4.63
1122 1260 4.771114 ATCAACCGGTGATCTAATTGGA 57.229 40.909 8.52 0.00 44.01 3.53
1156 1295 4.345547 GGGGTGTTTTAGGGTTTCAAATCA 59.654 41.667 0.00 0.00 0.00 2.57
1176 1315 1.539827 GAGTTCGATTTGTGTTGGGGG 59.460 52.381 0.00 0.00 0.00 5.40
1184 1323 1.352156 GCGAGGCGAGTTCGATTTGT 61.352 55.000 5.60 0.00 43.02 2.83
1539 1680 9.670719 GACCTTTGTTATTCAGAAAGAAGAAAG 57.329 33.333 16.51 16.51 42.28 2.62
1541 1682 7.497909 ACGACCTTTGTTATTCAGAAAGAAGAA 59.502 33.333 0.00 0.00 40.15 2.52
1543 1684 7.190920 ACGACCTTTGTTATTCAGAAAGAAG 57.809 36.000 0.00 0.00 40.15 2.85
1544 1685 7.562454 AACGACCTTTGTTATTCAGAAAGAA 57.438 32.000 0.00 0.00 41.28 2.52
1569 1710 1.134965 CACTGCAAAACACCGGGAAAA 60.135 47.619 6.32 0.00 0.00 2.29
1573 1714 2.027460 GCACTGCAAAACACCGGG 59.973 61.111 6.32 0.00 0.00 5.73
1574 1715 2.353376 CGCACTGCAAAACACCGG 60.353 61.111 0.00 0.00 0.00 5.28
1604 1746 0.666577 GCTCGTCCGGATTAATCCCG 60.667 60.000 25.60 22.35 44.24 5.14
1704 1856 7.145985 TCTATCTATATTCGGCAAACACAGTC 58.854 38.462 0.00 0.00 0.00 3.51
1707 1859 8.902540 AAATCTATCTATATTCGGCAAACACA 57.097 30.769 0.00 0.00 0.00 3.72
1816 1968 5.171339 ACTTAGTGCTCCAACATCAGATT 57.829 39.130 0.00 0.00 0.00 2.40
1822 1974 6.607004 AGTAGTAACTTAGTGCTCCAACAT 57.393 37.500 0.00 0.00 29.00 2.71
1856 2008 7.202526 TCAAAACTTTCTCATGTCCAAATCAC 58.797 34.615 0.00 0.00 0.00 3.06
1942 2106 5.459536 AAAGGAAATCTCCAACTTGCTTC 57.540 39.130 0.00 0.00 45.24 3.86
1967 2131 3.781079 TCCTGTTTGAGCACACAAAAG 57.219 42.857 0.00 0.00 40.62 2.27
1982 2146 5.426833 AGCTCTTAGGAATGTAACATCCTGT 59.573 40.000 10.75 0.00 45.59 4.00
1992 2156 4.619679 AGAAGGAGAGCTCTTAGGAATGT 58.380 43.478 19.36 0.00 0.00 2.71
1998 2162 6.128309 GCAAAAGAAAGAAGGAGAGCTCTTAG 60.128 42.308 19.36 0.00 31.61 2.18
2103 2270 0.741326 TTTGTAAGCCAAGCACGCAA 59.259 45.000 0.00 0.00 33.75 4.85
2256 2426 9.515020 ACAAATTCAACAAGCAATTATATACCG 57.485 29.630 0.00 0.00 0.00 4.02
2266 2436 6.403866 AGACCATACAAATTCAACAAGCAA 57.596 33.333 0.00 0.00 0.00 3.91
2327 2497 4.998033 CCCTTCTTCTGGTCTGAAAGTAAC 59.002 45.833 0.00 0.00 33.76 2.50
2347 2517 1.756950 CTGATTGCCTGCATGCCCT 60.757 57.895 16.68 0.00 0.00 5.19
2469 2639 2.254152 TACCCAATGAGCTCCTGAGT 57.746 50.000 12.15 8.20 0.00 3.41
2523 2693 5.888724 TCTAGTCCTCGTCTTCATCAAGAAT 59.111 40.000 0.00 0.00 40.49 2.40
2526 2696 5.766150 ATCTAGTCCTCGTCTTCATCAAG 57.234 43.478 0.00 0.00 0.00 3.02
2675 2845 1.678598 CTACCGTGGTAATGCCCGGA 61.679 60.000 19.84 6.73 46.93 5.14
2681 2851 6.690194 AGTACTAAGTCTACCGTGGTAATG 57.310 41.667 0.00 0.00 0.00 1.90
2962 3133 2.258726 GGCACTTCCGAGCCGTTTT 61.259 57.895 0.00 0.00 41.70 2.43
3069 3240 2.665165 TCCAATTTTCCACAGCACTGT 58.335 42.857 0.00 0.00 46.17 3.55
3201 3373 0.767998 ATCCTAAGCCTAAGCCCTGC 59.232 55.000 0.00 0.00 41.25 4.85
3237 3409 7.947890 AGAGGGGTACAAGAAAATGTATTTTGA 59.052 33.333 7.27 0.00 39.86 2.69
3250 3422 4.885907 CGTACTATCAAGAGGGGTACAAGA 59.114 45.833 0.00 0.00 34.29 3.02
3276 3448 3.024547 CCGAGATTCAGAGTGTAGGGAA 58.975 50.000 0.00 0.00 0.00 3.97
3295 3467 5.371115 TTTCTAGATTTTTGGTGCTTCCG 57.629 39.130 0.00 0.00 39.52 4.30
3300 3472 8.992073 ACAATGAAATTTCTAGATTTTTGGTGC 58.008 29.630 18.64 0.00 31.22 5.01
3335 3507 2.920912 TCGGCGGAAGGTGGTTCT 60.921 61.111 7.21 0.00 35.25 3.01
3359 3531 7.051623 TGGCAGTTTATACGAATGGAATTAGT 58.948 34.615 0.00 0.00 44.45 2.24
3405 3577 6.165659 ACGAGATCAATTTTGGTTTACTCG 57.834 37.500 0.00 0.00 46.13 4.18
3412 3585 6.039270 TCACAAGAAACGAGATCAATTTTGGT 59.961 34.615 0.00 0.00 0.00 3.67
3527 3700 2.746904 CAAGTGTTGGTTGAGTGACACA 59.253 45.455 8.59 0.00 43.56 3.72
3544 3717 7.069208 TGAGATTAGTGATGATAGTCAGCAAGT 59.931 37.037 0.00 0.00 44.97 3.16
3600 3773 9.379791 GTTTACTCAAAAGCCACATACTACTAT 57.620 33.333 0.00 0.00 0.00 2.12
3601 3774 7.820872 GGTTTACTCAAAAGCCACATACTACTA 59.179 37.037 0.00 0.00 39.23 1.82
3602 3775 6.653740 GGTTTACTCAAAAGCCACATACTACT 59.346 38.462 0.00 0.00 39.23 2.57
3632 3805 6.183360 CCACTCAGCACAAGAAATAAGATCAG 60.183 42.308 0.00 0.00 0.00 2.90
3640 3813 1.985473 TGCCACTCAGCACAAGAAAT 58.015 45.000 0.00 0.00 38.00 2.17
3659 3832 2.900546 GGATAGCTACCTGGCACACTAT 59.099 50.000 0.00 0.00 34.17 2.12
3663 3836 1.342975 TGAGGATAGCTACCTGGCACA 60.343 52.381 16.60 7.96 37.93 4.57
3664 3837 1.414158 TGAGGATAGCTACCTGGCAC 58.586 55.000 16.60 5.97 37.93 5.01
3751 3925 3.099905 TGAGATTACTGGTGGGAGACAG 58.900 50.000 0.00 0.00 40.48 3.51
3775 3949 2.241160 TGAGTTTCCGTAGCTGGTACA 58.759 47.619 16.31 0.00 0.00 2.90
3787 3961 8.027189 GGACATTGTAAGGTTAAATGAGTTTCC 58.973 37.037 1.89 0.00 35.67 3.13
3788 3962 8.027189 GGGACATTGTAAGGTTAAATGAGTTTC 58.973 37.037 1.89 0.00 35.67 2.78
3868 4043 2.438254 TGGCTAGCAACATGCCCG 60.438 61.111 18.24 0.00 46.52 6.13
3991 4166 2.852449 GCCAGAGGCCCTCTTAATTAC 58.148 52.381 11.57 0.00 44.06 1.89
4148 4325 5.485353 CCTAGCCATACATCTTCCCAGAATA 59.515 44.000 0.00 0.00 30.76 1.75
4240 4417 4.219288 AGTCCATCCATCAGCAAAAACTTC 59.781 41.667 0.00 0.00 0.00 3.01
4275 4452 2.580783 CCCTCCCCAAATCACTTTCCTA 59.419 50.000 0.00 0.00 0.00 2.94
4278 4455 2.604912 ACCCTCCCCAAATCACTTTC 57.395 50.000 0.00 0.00 0.00 2.62
4280 4457 2.291605 GCTAACCCTCCCCAAATCACTT 60.292 50.000 0.00 0.00 0.00 3.16
4419 4596 4.299978 GGACTTGTCTAGCCTTAATAGCG 58.700 47.826 0.61 0.00 34.64 4.26
4497 4678 0.535780 CTGACCAGCCACAAGAGCAA 60.536 55.000 0.00 0.00 0.00 3.91
4500 4681 1.066573 CCTACTGACCAGCCACAAGAG 60.067 57.143 0.00 0.00 0.00 2.85
4514 4695 8.846211 TCCTTTGTCAAAATACTTTTCCTACTG 58.154 33.333 0.00 0.00 0.00 2.74
4528 4719 5.651387 TGACACAACATCCTTTGTCAAAA 57.349 34.783 0.00 0.00 44.09 2.44
4532 4723 4.539870 CACATGACACAACATCCTTTGTC 58.460 43.478 0.00 0.00 37.62 3.18
4533 4724 3.318839 CCACATGACACAACATCCTTTGT 59.681 43.478 0.00 0.00 40.46 2.83
4534 4725 3.569277 TCCACATGACACAACATCCTTTG 59.431 43.478 0.00 0.00 0.00 2.77
4535 4726 3.822735 CTCCACATGACACAACATCCTTT 59.177 43.478 0.00 0.00 0.00 3.11
4536 4727 3.415212 CTCCACATGACACAACATCCTT 58.585 45.455 0.00 0.00 0.00 3.36
4537 4728 2.290514 CCTCCACATGACACAACATCCT 60.291 50.000 0.00 0.00 0.00 3.24
4545 4736 2.636830 CTTCCATCCTCCACATGACAC 58.363 52.381 0.00 0.00 0.00 3.67
4549 4740 0.921896 ACCCTTCCATCCTCCACATG 59.078 55.000 0.00 0.00 0.00 3.21
4551 4742 1.080498 AGTACCCTTCCATCCTCCACA 59.920 52.381 0.00 0.00 0.00 4.17
4552 4743 1.763545 GAGTACCCTTCCATCCTCCAC 59.236 57.143 0.00 0.00 0.00 4.02
4554 4745 1.041437 CGAGTACCCTTCCATCCTCC 58.959 60.000 0.00 0.00 0.00 4.30
4625 4840 2.047560 AAACACGCCTCGCTACCC 60.048 61.111 0.00 0.00 0.00 3.69
4691 4906 1.428448 CGTCTGGATCAGCAAACGAA 58.572 50.000 0.00 0.00 33.21 3.85
4705 4920 0.370273 GCTTTGTATCCACGCGTCTG 59.630 55.000 9.86 3.30 0.00 3.51
4708 4923 1.463444 GAAAGCTTTGTATCCACGCGT 59.537 47.619 18.30 5.58 0.00 6.01
4724 4939 4.620184 CCTTTACGACGACTAACAGGAAAG 59.380 45.833 0.00 0.00 0.00 2.62
4784 4999 6.669125 ATTCAACCAATGTTTTCCAGATGA 57.331 33.333 0.00 0.00 30.42 2.92
4817 5032 5.044550 AGGAAAGCTTTCTATCCAGTCCATT 60.045 40.000 32.28 2.49 37.35 3.16
4818 5033 4.476479 AGGAAAGCTTTCTATCCAGTCCAT 59.524 41.667 32.28 4.07 37.35 3.41
4823 5038 5.295540 GCTAACAGGAAAGCTTTCTATCCAG 59.704 44.000 32.28 24.22 37.35 3.86
4830 5201 2.413371 CGCAGCTAACAGGAAAGCTTTC 60.413 50.000 27.68 27.68 46.82 2.62
4928 5300 7.816995 TGCAATCCAGACCAACAATTAATTAAC 59.183 33.333 0.00 0.00 0.00 2.01
4930 5302 7.363705 CCTGCAATCCAGACCAACAATTAATTA 60.364 37.037 0.00 0.00 44.64 1.40
4960 5338 2.010497 GACGGATTTTCCAAGCTCCTC 58.990 52.381 0.00 0.00 35.91 3.71
4968 5346 3.864944 GTCGCGACGGATTTTCCA 58.135 55.556 25.19 0.00 35.91 3.53
4990 5368 0.671781 CAGGACCAGAAGACTTGCCG 60.672 60.000 0.00 0.00 0.00 5.69
4993 5371 0.671781 CGCCAGGACCAGAAGACTTG 60.672 60.000 0.00 0.00 0.00 3.16
4995 5373 2.286523 CCGCCAGGACCAGAAGACT 61.287 63.158 0.00 0.00 41.02 3.24
5010 5392 0.316196 CCGAAGAAATCATTCGCCGC 60.316 55.000 2.70 0.00 46.23 6.53
5015 5397 3.740044 TTCACGCCGAAGAAATCATTC 57.260 42.857 0.00 0.00 35.70 2.67
5051 5433 1.950216 TCTCCGATCCTGAGAATGACG 59.050 52.381 7.05 0.00 35.98 4.35
5075 5457 5.300752 TCCTCACAACAGCTTTTCTTCTAG 58.699 41.667 0.00 0.00 0.00 2.43
5122 5504 8.747538 ACCTCTAAAAATACATATGTCCAACC 57.252 34.615 12.68 0.00 0.00 3.77
5243 5626 3.612423 CAGCATTTGACAACATGCATGAG 59.388 43.478 32.75 24.30 42.06 2.90
5245 5628 2.670905 CCAGCATTTGACAACATGCATG 59.329 45.455 25.09 25.09 42.06 4.06
5247 5632 1.687660 ACCAGCATTTGACAACATGCA 59.312 42.857 24.39 0.00 42.06 3.96
5250 5635 1.895131 GGGACCAGCATTTGACAACAT 59.105 47.619 0.00 0.00 0.00 2.71
5255 5640 2.299867 ACAAATGGGACCAGCATTTGAC 59.700 45.455 28.62 0.00 44.51 3.18
5256 5641 2.299582 CACAAATGGGACCAGCATTTGA 59.700 45.455 28.62 0.00 44.51 2.69
5257 5642 2.690786 CACAAATGGGACCAGCATTTG 58.309 47.619 23.82 23.82 46.10 2.32
5258 5643 1.002315 GCACAAATGGGACCAGCATTT 59.998 47.619 3.58 3.58 0.00 2.32
5259 5644 0.609662 GCACAAATGGGACCAGCATT 59.390 50.000 0.00 0.00 0.00 3.56
5260 5645 0.251922 AGCACAAATGGGACCAGCAT 60.252 50.000 0.00 0.00 0.00 3.79
5261 5646 0.469705 AAGCACAAATGGGACCAGCA 60.470 50.000 0.00 0.00 0.00 4.41
5262 5647 1.544724 TAAGCACAAATGGGACCAGC 58.455 50.000 0.00 0.00 0.00 4.85
5263 5648 3.091545 ACATAAGCACAAATGGGACCAG 58.908 45.455 0.00 0.00 0.00 4.00
5264 5649 3.168035 ACATAAGCACAAATGGGACCA 57.832 42.857 0.00 0.00 0.00 4.02
5265 5650 4.535526 AAACATAAGCACAAATGGGACC 57.464 40.909 0.00 0.00 0.00 4.46
5266 5651 8.546597 AAAATAAACATAAGCACAAATGGGAC 57.453 30.769 0.00 0.00 0.00 4.46
5301 5686 9.554724 GTCGAAACATAAACATAATCACAACAT 57.445 29.630 0.00 0.00 0.00 2.71
5303 5688 7.953173 TCGTCGAAACATAAACATAATCACAAC 59.047 33.333 0.00 0.00 0.00 3.32
5304 5689 8.019769 TCGTCGAAACATAAACATAATCACAA 57.980 30.769 0.00 0.00 0.00 3.33
5305 5690 7.583860 TCGTCGAAACATAAACATAATCACA 57.416 32.000 0.00 0.00 0.00 3.58
5306 5691 7.792508 GGATCGTCGAAACATAAACATAATCAC 59.207 37.037 0.00 0.00 0.00 3.06
5307 5692 7.709182 AGGATCGTCGAAACATAAACATAATCA 59.291 33.333 0.00 0.00 0.00 2.57
5309 5694 7.518370 GCAGGATCGTCGAAACATAAACATAAT 60.518 37.037 0.00 0.00 0.00 1.28
5310 5695 6.237996 GCAGGATCGTCGAAACATAAACATAA 60.238 38.462 0.00 0.00 0.00 1.90
5312 5697 4.034048 GCAGGATCGTCGAAACATAAACAT 59.966 41.667 0.00 0.00 0.00 2.71
5313 5698 3.369756 GCAGGATCGTCGAAACATAAACA 59.630 43.478 0.00 0.00 0.00 2.83
5314 5699 3.617263 AGCAGGATCGTCGAAACATAAAC 59.383 43.478 0.00 0.00 0.00 2.01
5315 5700 3.616821 CAGCAGGATCGTCGAAACATAAA 59.383 43.478 0.00 0.00 0.00 1.40
5316 5701 3.186909 CAGCAGGATCGTCGAAACATAA 58.813 45.455 0.00 0.00 0.00 1.90
5317 5702 2.165641 ACAGCAGGATCGTCGAAACATA 59.834 45.455 0.00 0.00 0.00 2.29
5319 5704 0.317160 ACAGCAGGATCGTCGAAACA 59.683 50.000 0.00 0.00 0.00 2.83
5320 5705 0.716108 CACAGCAGGATCGTCGAAAC 59.284 55.000 0.00 0.00 0.00 2.78
5324 5709 0.179127 ATGACACAGCAGGATCGTCG 60.179 55.000 0.00 0.00 0.00 5.12
5325 5710 1.565305 GATGACACAGCAGGATCGTC 58.435 55.000 0.00 0.00 0.00 4.20
5326 5711 0.179127 CGATGACACAGCAGGATCGT 60.179 55.000 0.00 0.00 33.01 3.73
5328 5713 1.662629 CAACGATGACACAGCAGGATC 59.337 52.381 0.00 0.00 0.00 3.36
5329 5714 1.276138 TCAACGATGACACAGCAGGAT 59.724 47.619 0.00 0.00 0.00 3.24
5331 5716 3.215642 TCAACGATGACACAGCAGG 57.784 52.632 0.00 0.00 0.00 4.85
5363 7864 3.959495 ATCAGGTATTCCCAAGTGCAT 57.041 42.857 0.00 0.00 34.66 3.96
5377 7878 8.220898 TCTCATAGGTAGTATCACTATCAGGT 57.779 38.462 0.00 0.00 34.28 4.00
5378 7879 9.521841 TTTCTCATAGGTAGTATCACTATCAGG 57.478 37.037 0.00 0.00 34.28 3.86
5382 7883 8.754080 GCCATTTCTCATAGGTAGTATCACTAT 58.246 37.037 0.00 0.00 32.65 2.12
5384 7886 6.294787 CGCCATTTCTCATAGGTAGTATCACT 60.295 42.308 0.00 0.00 0.00 3.41
5388 7891 6.420913 AACGCCATTTCTCATAGGTAGTAT 57.579 37.500 0.00 0.00 0.00 2.12
5390 7893 4.755266 AACGCCATTTCTCATAGGTAGT 57.245 40.909 0.00 0.00 0.00 2.73
5391 7894 6.761714 ACTTAAACGCCATTTCTCATAGGTAG 59.238 38.462 0.00 0.00 0.00 3.18
5397 7900 5.356751 TGCATACTTAAACGCCATTTCTCAT 59.643 36.000 0.00 0.00 0.00 2.90
5400 7903 5.835113 ATGCATACTTAAACGCCATTTCT 57.165 34.783 0.00 0.00 0.00 2.52
5418 7921 2.898705 TGATGTGCGTGTATGTATGCA 58.101 42.857 0.00 0.00 40.08 3.96
5419 7922 3.742882 AGATGATGTGCGTGTATGTATGC 59.257 43.478 0.00 0.00 0.00 3.14
5420 7923 6.863126 TCTTAGATGATGTGCGTGTATGTATG 59.137 38.462 0.00 0.00 0.00 2.39
5426 7929 6.337356 TCATTTCTTAGATGATGTGCGTGTA 58.663 36.000 6.17 0.00 0.00 2.90
5428 7931 5.723492 TCATTTCTTAGATGATGTGCGTG 57.277 39.130 6.17 0.00 0.00 5.34
5450 7955 3.941483 CAGAAATTTACGTCCAGCCTCAT 59.059 43.478 0.00 0.00 0.00 2.90
5457 7962 4.900684 TCACCATCAGAAATTTACGTCCA 58.099 39.130 0.00 0.00 0.00 4.02
5458 7963 5.584649 TCATCACCATCAGAAATTTACGTCC 59.415 40.000 0.00 0.00 0.00 4.79
5461 7966 7.250445 TCATCATCACCATCAGAAATTTACG 57.750 36.000 0.00 0.00 0.00 3.18
5485 8115 7.228314 TCAGCCTCGCTATGTACTATTAATT 57.772 36.000 0.00 0.00 36.40 1.40
5493 8123 5.061064 CGAATTATTCAGCCTCGCTATGTAC 59.939 44.000 5.76 0.00 36.40 2.90
5500 8130 2.219674 CAGTCGAATTATTCAGCCTCGC 59.780 50.000 5.76 0.00 0.00 5.03
5501 8131 3.448686 ACAGTCGAATTATTCAGCCTCG 58.551 45.455 5.76 0.00 0.00 4.63
5502 8132 5.803020 AAACAGTCGAATTATTCAGCCTC 57.197 39.130 5.76 0.00 0.00 4.70
5529 8168 9.836864 ACTGAAGCATGATTATTATGAACTGTA 57.163 29.630 0.00 0.00 0.00 2.74
5531 8170 9.661187 GAACTGAAGCATGATTATTATGAACTG 57.339 33.333 0.00 0.00 0.00 3.16
5535 8177 8.437360 AACGAACTGAAGCATGATTATTATGA 57.563 30.769 0.00 0.00 0.00 2.15
5536 8178 8.337532 TGAACGAACTGAAGCATGATTATTATG 58.662 33.333 0.00 0.00 0.00 1.90
5537 8179 8.338259 GTGAACGAACTGAAGCATGATTATTAT 58.662 33.333 0.00 0.00 0.00 1.28
5538 8180 7.333174 TGTGAACGAACTGAAGCATGATTATTA 59.667 33.333 0.00 0.00 0.00 0.98
5539 8181 6.149308 TGTGAACGAACTGAAGCATGATTATT 59.851 34.615 0.00 0.00 0.00 1.40
5540 8182 5.643348 TGTGAACGAACTGAAGCATGATTAT 59.357 36.000 0.00 0.00 0.00 1.28
5542 8184 3.814842 TGTGAACGAACTGAAGCATGATT 59.185 39.130 0.00 0.00 0.00 2.57
5543 8185 3.402110 TGTGAACGAACTGAAGCATGAT 58.598 40.909 0.00 0.00 0.00 2.45
5544 8186 2.802247 CTGTGAACGAACTGAAGCATGA 59.198 45.455 0.00 0.00 0.00 3.07
5545 8187 2.802247 TCTGTGAACGAACTGAAGCATG 59.198 45.455 0.00 0.00 0.00 4.06
5546 8188 3.062763 CTCTGTGAACGAACTGAAGCAT 58.937 45.455 0.00 0.00 0.00 3.79
5547 8189 2.473816 CTCTGTGAACGAACTGAAGCA 58.526 47.619 0.00 0.00 0.00 3.91
5548 8190 1.193426 GCTCTGTGAACGAACTGAAGC 59.807 52.381 0.00 0.00 0.00 3.86
5549 8191 1.453524 CGCTCTGTGAACGAACTGAAG 59.546 52.381 0.00 0.00 0.00 3.02
5550 8192 1.202371 ACGCTCTGTGAACGAACTGAA 60.202 47.619 0.00 0.00 0.00 3.02
5551 8193 0.384309 ACGCTCTGTGAACGAACTGA 59.616 50.000 0.00 0.00 0.00 3.41
5552 8194 1.190323 GAACGCTCTGTGAACGAACTG 59.810 52.381 0.00 0.00 0.00 3.16
5553 8195 1.202371 TGAACGCTCTGTGAACGAACT 60.202 47.619 0.00 0.00 0.00 3.01
5554 8196 1.071436 GTGAACGCTCTGTGAACGAAC 60.071 52.381 0.00 0.00 0.00 3.95
5555 8197 1.205657 GTGAACGCTCTGTGAACGAA 58.794 50.000 0.00 0.00 0.00 3.85
5556 8198 0.933047 CGTGAACGCTCTGTGAACGA 60.933 55.000 0.00 0.00 40.68 3.85
5557 8199 1.482955 CGTGAACGCTCTGTGAACG 59.517 57.895 0.00 0.00 34.97 3.95
5582 8224 2.141011 CTCCTCCCATGGCCAACACA 62.141 60.000 10.96 0.00 0.00 3.72
5625 8279 3.481903 CAGTACGCGCACCTGCTG 61.482 66.667 5.73 1.37 39.32 4.41
5626 8280 4.742201 CCAGTACGCGCACCTGCT 62.742 66.667 5.73 0.00 39.32 4.24
5652 8306 2.434884 CAGTACCACGGCCTGCAG 60.435 66.667 6.78 6.78 0.00 4.41
5658 8312 1.447314 GCTGTACCAGTACCACGGC 60.447 63.158 5.53 0.00 37.40 5.68
5659 8313 1.153901 CGCTGTACCAGTACCACGG 60.154 63.158 5.53 0.00 35.26 4.94
5660 8314 0.179171 CTCGCTGTACCAGTACCACG 60.179 60.000 5.53 8.91 35.26 4.94
5661 8315 0.886563 ACTCGCTGTACCAGTACCAC 59.113 55.000 5.53 0.00 35.26 4.16
5662 8316 2.290514 ACTACTCGCTGTACCAGTACCA 60.291 50.000 5.53 0.00 35.26 3.25
5663 8317 2.354199 GACTACTCGCTGTACCAGTACC 59.646 54.545 5.53 0.00 35.26 3.34
5664 8318 2.030213 CGACTACTCGCTGTACCAGTAC 59.970 54.545 0.86 0.86 33.43 2.73
5665 8319 2.094026 TCGACTACTCGCTGTACCAGTA 60.094 50.000 0.00 0.00 39.96 2.74
5666 8320 1.085091 CGACTACTCGCTGTACCAGT 58.915 55.000 0.00 0.00 33.43 4.00
5667 8321 1.366679 TCGACTACTCGCTGTACCAG 58.633 55.000 0.00 0.00 39.96 4.00
5668 8322 1.736126 CTTCGACTACTCGCTGTACCA 59.264 52.381 0.00 0.00 39.96 3.25
5669 8323 1.531470 GCTTCGACTACTCGCTGTACC 60.531 57.143 0.00 0.00 39.96 3.34
5675 8329 2.278013 CCGGCTTCGACTACTCGC 60.278 66.667 0.00 0.00 39.96 5.03
5715 8369 4.477975 CTCGCCGAGGTCGTGTCC 62.478 72.222 6.13 0.00 37.74 4.02
5772 8426 2.879462 GGCTACTTCGCCGTGTCG 60.879 66.667 0.00 0.00 40.79 4.35
5970 8624 2.753043 GTGGAGACCGACGGGCTA 60.753 66.667 25.54 4.79 43.92 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.