Multiple sequence alignment - TraesCS7A01G116000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G116000 chr7A 100.000 4553 0 0 1 4553 74157259 74161811 0.000000e+00 8408.0
1 TraesCS7A01G116000 chr7B 88.605 2194 128 50 513 2641 8868849 8866713 0.000000e+00 2555.0
2 TraesCS7A01G116000 chr7B 87.850 749 47 19 2818 3556 8866364 8865650 0.000000e+00 839.0
3 TraesCS7A01G116000 chr7B 87.031 586 37 18 3882 4429 8863339 8862755 3.870000e-175 625.0
4 TraesCS7A01G116000 chr7B 87.168 226 20 7 1 223 8869190 8868971 9.780000e-62 248.0
5 TraesCS7A01G116000 chr7B 88.235 102 4 3 4460 4553 8862757 8862656 1.040000e-21 115.0
6 TraesCS7A01G116000 chr7B 85.321 109 7 5 221 322 8868941 8868835 2.240000e-18 104.0
7 TraesCS7A01G116000 chr7D 91.269 859 46 16 513 1347 66699391 66698538 0.000000e+00 1144.0
8 TraesCS7A01G116000 chr7D 88.736 870 59 17 1352 2215 66698248 66697412 0.000000e+00 1027.0
9 TraesCS7A01G116000 chr7D 87.769 744 37 23 2821 3555 66696599 66695901 0.000000e+00 821.0
10 TraesCS7A01G116000 chr7D 90.476 462 34 3 2206 2660 66697393 66696935 6.520000e-168 601.0
11 TraesCS7A01G116000 chr7D 86.631 561 41 12 3882 4418 66694495 66693945 1.410000e-164 590.0
12 TraesCS7A01G116000 chr7D 89.562 297 16 5 4266 4553 66693959 66693669 3.350000e-96 363.0
13 TraesCS7A01G116000 chr7D 78.448 232 28 15 1 223 66699725 66699507 1.030000e-26 132.0
14 TraesCS7A01G116000 chr2B 83.415 205 16 10 326 518 150691126 150691324 1.680000e-39 174.0
15 TraesCS7A01G116000 chr2B 91.579 95 6 2 317 411 602777 602685 3.700000e-26 130.0
16 TraesCS7A01G116000 chr5A 81.218 197 28 8 324 517 549724746 549724556 2.840000e-32 150.0
17 TraesCS7A01G116000 chr5A 87.692 65 8 0 2571 2635 385955870 385955934 4.880000e-10 76.8
18 TraesCS7A01G116000 chr5D 95.556 90 3 1 324 413 519276020 519276108 4.750000e-30 143.0
19 TraesCS7A01G116000 chr5D 88.571 70 7 1 2566 2635 293163801 293163869 2.920000e-12 84.2
20 TraesCS7A01G116000 chr5D 92.593 54 4 0 2582 2635 293096040 293096093 1.360000e-10 78.7
21 TraesCS7A01G116000 chr1A 97.619 84 1 1 324 407 204802768 204802686 4.750000e-30 143.0
22 TraesCS7A01G116000 chr1A 96.000 50 2 0 2571 2620 571787332 571787381 1.050000e-11 82.4
23 TraesCS7A01G116000 chr1A 94.000 50 3 0 2572 2621 571725045 571725094 4.880000e-10 76.8
24 TraesCS7A01G116000 chr1B 82.065 184 15 11 324 505 647101143 647100976 1.710000e-29 141.0
25 TraesCS7A01G116000 chr1B 81.522 184 16 11 324 505 647103261 647103094 7.950000e-28 135.0
26 TraesCS7A01G116000 chr1B 88.000 100 9 2 415 514 577487980 577487884 1.040000e-21 115.0
27 TraesCS7A01G116000 chr1B 92.188 64 5 0 2571 2634 662016688 662016751 1.740000e-14 91.6
28 TraesCS7A01G116000 chr1B 88.525 61 7 0 2573 2633 662005492 662005552 1.760000e-09 75.0
29 TraesCS7A01G116000 chr6D 97.561 82 1 1 327 408 351756792 351756712 6.140000e-29 139.0
30 TraesCS7A01G116000 chr6D 87.379 103 9 3 414 516 98125052 98124954 1.040000e-21 115.0
31 TraesCS7A01G116000 chr3A 96.429 84 2 1 325 408 36388785 36388867 2.210000e-28 137.0
32 TraesCS7A01G116000 chr4B 91.667 96 6 2 319 413 671855437 671855343 1.030000e-26 132.0
33 TraesCS7A01G116000 chr1D 91.667 96 6 2 314 408 392546108 392546014 1.030000e-26 132.0
34 TraesCS7A01G116000 chr1D 90.426 94 7 1 414 507 127779837 127779746 6.190000e-24 122.0
35 TraesCS7A01G116000 chr1D 91.525 59 5 0 2571 2629 475918998 475919056 1.050000e-11 82.4
36 TraesCS7A01G116000 chr1D 96.000 50 2 0 2571 2620 475923448 475923497 1.050000e-11 82.4
37 TraesCS7A01G116000 chr2A 91.209 91 4 3 414 504 69218377 69218463 2.220000e-23 121.0
38 TraesCS7A01G116000 chr2A 88.235 102 8 3 414 515 332661080 332660983 8.000000e-23 119.0
39 TraesCS7A01G116000 chr2D 88.000 100 9 2 415 514 260149912 260149816 1.040000e-21 115.0
40 TraesCS7A01G116000 chr6A 86.667 105 11 3 414 518 29163333 29163434 3.720000e-21 113.0
41 TraesCS7A01G116000 chr5B 87.692 65 8 0 2571 2635 334593991 334594055 4.880000e-10 76.8
42 TraesCS7A01G116000 chr5B 86.957 69 8 1 2567 2635 334683231 334683298 4.880000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G116000 chr7A 74157259 74161811 4552 False 8408.000000 8408 100.000000 1 4553 1 chr7A.!!$F1 4552
1 TraesCS7A01G116000 chr7B 8862656 8869190 6534 True 747.666667 2555 87.368333 1 4553 6 chr7B.!!$R1 4552
2 TraesCS7A01G116000 chr7D 66693669 66699725 6056 True 668.285714 1144 87.555857 1 4553 7 chr7D.!!$R1 4552

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
448 494 0.033366 TAGAGTGTGTGTGCGTGCAT 59.967 50.0 0.00 0.00 0.00 3.96 F
457 503 0.035534 TGTGCGTGCATTCATAGGGT 60.036 50.0 0.00 0.00 0.00 4.34 F
651 709 0.100503 CCAATAAGCTTTTCGGCCGG 59.899 55.0 27.83 10.44 0.00 6.13 F
1852 2252 0.395311 ATGCTTGCCATCCAGACAGG 60.395 55.0 0.00 0.00 39.47 4.00 F
2729 3227 0.321475 TGCCGATGCTCATGAACACA 60.321 50.0 0.00 0.00 38.71 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2070 2474 0.108756 GCTGGAACCACGAGTACTCC 60.109 60.0 17.23 2.72 0.0 3.85 R
2076 2480 1.813513 ATTCTTGCTGGAACCACGAG 58.186 50.0 0.00 0.00 0.0 4.18 R
2478 2942 0.839277 TCATACCCAGGACCATGCAG 59.161 55.0 0.00 0.00 0.0 4.41 R
2839 3651 0.169230 ATCGTCGTCTCAGTCAGTGC 59.831 55.0 0.00 0.00 0.0 4.40 R
3844 5373 0.251922 ATGCTGGTCCCATTTGTGCT 60.252 50.0 0.00 0.00 0.0 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 9.565090 TCCAAGAGTATTTCAAATATGGATCTG 57.435 33.333 6.21 0.00 29.93 2.90
74 75 5.255687 ACATATCTTGTGAGCATTGACCAA 58.744 37.500 0.00 0.00 37.11 3.67
154 155 0.185901 GGCATCCTGCTATTTCCCCA 59.814 55.000 0.00 0.00 44.28 4.96
181 189 4.874970 AGGCATCACACTTCATTTTGTTC 58.125 39.130 0.00 0.00 0.00 3.18
188 196 8.755018 CATCACACTTCATTTTGTTCTTTAACC 58.245 33.333 0.00 0.00 34.49 2.85
192 200 8.474025 ACACTTCATTTTGTTCTTTAACCATCA 58.526 29.630 0.00 0.00 34.49 3.07
230 269 2.941583 GCTCCCCTGGGTTTCCCT 60.942 66.667 12.71 0.00 45.70 4.20
233 272 1.388217 TCCCCTGGGTTTCCCTTGT 60.388 57.895 12.71 0.00 45.70 3.16
245 284 0.912487 TCCCTTGTACCCCTTGCGAT 60.912 55.000 0.00 0.00 0.00 4.58
295 339 9.843874 GCAAATTCGTAGTTAAAAAGAAAAAGG 57.156 29.630 0.00 0.00 0.00 3.11
323 369 4.742659 CACAACGACAAATTTGGGTTTAGG 59.257 41.667 21.74 14.34 30.14 2.69
324 370 3.653539 ACGACAAATTTGGGTTTAGGC 57.346 42.857 21.74 0.00 0.00 3.93
325 371 2.030628 ACGACAAATTTGGGTTTAGGCG 60.031 45.455 21.74 9.40 31.52 5.52
326 372 2.226912 CGACAAATTTGGGTTTAGGCGA 59.773 45.455 21.74 0.00 0.00 5.54
327 373 3.304794 CGACAAATTTGGGTTTAGGCGAA 60.305 43.478 21.74 0.00 0.00 4.70
328 374 3.985008 ACAAATTTGGGTTTAGGCGAAC 58.015 40.909 21.74 0.00 0.00 3.95
329 375 3.243941 ACAAATTTGGGTTTAGGCGAACC 60.244 43.478 21.74 14.91 46.70 3.62
336 382 2.433436 GGTTTAGGCGAACCAATCTGT 58.567 47.619 17.37 0.00 46.66 3.41
337 383 2.161609 GGTTTAGGCGAACCAATCTGTG 59.838 50.000 17.37 0.00 46.66 3.66
350 396 4.970662 CAATCTGTGGTTGGATGGTTAG 57.029 45.455 0.00 0.00 0.00 2.34
351 397 4.588899 CAATCTGTGGTTGGATGGTTAGA 58.411 43.478 0.00 0.00 0.00 2.10
352 398 3.981071 TCTGTGGTTGGATGGTTAGAG 57.019 47.619 0.00 0.00 0.00 2.43
353 399 2.571653 TCTGTGGTTGGATGGTTAGAGG 59.428 50.000 0.00 0.00 0.00 3.69
354 400 1.633432 TGTGGTTGGATGGTTAGAGGG 59.367 52.381 0.00 0.00 0.00 4.30
355 401 1.913419 GTGGTTGGATGGTTAGAGGGA 59.087 52.381 0.00 0.00 0.00 4.20
356 402 2.509964 GTGGTTGGATGGTTAGAGGGAT 59.490 50.000 0.00 0.00 0.00 3.85
357 403 3.714798 GTGGTTGGATGGTTAGAGGGATA 59.285 47.826 0.00 0.00 0.00 2.59
358 404 4.165372 GTGGTTGGATGGTTAGAGGGATAA 59.835 45.833 0.00 0.00 0.00 1.75
359 405 4.412199 TGGTTGGATGGTTAGAGGGATAAG 59.588 45.833 0.00 0.00 0.00 1.73
360 406 4.412528 GGTTGGATGGTTAGAGGGATAAGT 59.587 45.833 0.00 0.00 0.00 2.24
361 407 5.368989 GTTGGATGGTTAGAGGGATAAGTG 58.631 45.833 0.00 0.00 0.00 3.16
362 408 3.973973 TGGATGGTTAGAGGGATAAGTGG 59.026 47.826 0.00 0.00 0.00 4.00
363 409 3.974642 GGATGGTTAGAGGGATAAGTGGT 59.025 47.826 0.00 0.00 0.00 4.16
364 410 5.152934 GGATGGTTAGAGGGATAAGTGGTA 58.847 45.833 0.00 0.00 0.00 3.25
365 411 5.785940 GGATGGTTAGAGGGATAAGTGGTAT 59.214 44.000 0.00 0.00 0.00 2.73
366 412 6.070710 GGATGGTTAGAGGGATAAGTGGTATC 60.071 46.154 0.00 0.00 38.35 2.24
373 419 2.861147 GATAAGTGGTATCCCCAGCC 57.139 55.000 0.00 0.00 46.45 4.85
374 420 1.351350 GATAAGTGGTATCCCCAGCCC 59.649 57.143 0.00 0.00 46.45 5.19
375 421 0.045008 TAAGTGGTATCCCCAGCCCA 59.955 55.000 0.00 0.00 46.45 5.36
376 422 1.571773 AAGTGGTATCCCCAGCCCAC 61.572 60.000 0.00 0.00 46.45 4.61
377 423 2.694616 TGGTATCCCCAGCCCACC 60.695 66.667 0.00 0.00 38.72 4.61
378 424 2.694616 GGTATCCCCAGCCCACCA 60.695 66.667 0.00 0.00 0.00 4.17
379 425 2.757124 GGTATCCCCAGCCCACCAG 61.757 68.421 0.00 0.00 0.00 4.00
380 426 2.368192 TATCCCCAGCCCACCAGG 60.368 66.667 0.00 0.00 39.47 4.45
392 438 2.185004 CCACCAGGGTTCAAGTACTG 57.815 55.000 0.00 0.00 0.00 2.74
395 441 2.185004 CCAGGGTTCAAGTACTGGTG 57.815 55.000 0.00 0.00 44.21 4.17
396 442 1.523758 CAGGGTTCAAGTACTGGTGC 58.476 55.000 0.00 0.00 0.00 5.01
397 443 1.072331 CAGGGTTCAAGTACTGGTGCT 59.928 52.381 0.00 0.00 0.00 4.40
398 444 1.348036 AGGGTTCAAGTACTGGTGCTC 59.652 52.381 0.00 0.00 0.00 4.26
399 445 1.429463 GGTTCAAGTACTGGTGCTCG 58.571 55.000 0.00 0.00 0.00 5.03
400 446 0.790814 GTTCAAGTACTGGTGCTCGC 59.209 55.000 0.00 0.00 0.00 5.03
401 447 0.391228 TTCAAGTACTGGTGCTCGCA 59.609 50.000 0.00 0.00 0.00 5.10
402 448 0.608130 TCAAGTACTGGTGCTCGCAT 59.392 50.000 0.00 0.00 0.00 4.73
403 449 1.001974 TCAAGTACTGGTGCTCGCATT 59.998 47.619 0.00 0.00 0.00 3.56
404 450 2.232696 TCAAGTACTGGTGCTCGCATTA 59.767 45.455 0.00 0.00 0.00 1.90
405 451 3.118775 TCAAGTACTGGTGCTCGCATTAT 60.119 43.478 0.00 0.00 0.00 1.28
406 452 3.543680 AGTACTGGTGCTCGCATTATT 57.456 42.857 0.00 0.00 0.00 1.40
407 453 3.458189 AGTACTGGTGCTCGCATTATTC 58.542 45.455 0.00 0.00 0.00 1.75
408 454 2.698855 ACTGGTGCTCGCATTATTCT 57.301 45.000 0.00 0.00 0.00 2.40
409 455 2.991250 ACTGGTGCTCGCATTATTCTT 58.009 42.857 0.00 0.00 0.00 2.52
410 456 2.679837 ACTGGTGCTCGCATTATTCTTG 59.320 45.455 0.00 0.00 0.00 3.02
411 457 2.938451 CTGGTGCTCGCATTATTCTTGA 59.062 45.455 0.00 0.00 0.00 3.02
412 458 3.342719 TGGTGCTCGCATTATTCTTGAA 58.657 40.909 0.00 0.00 0.00 2.69
413 459 3.755905 TGGTGCTCGCATTATTCTTGAAA 59.244 39.130 0.00 0.00 0.00 2.69
414 460 4.217334 TGGTGCTCGCATTATTCTTGAAAA 59.783 37.500 0.00 0.00 0.00 2.29
416 462 4.795278 GTGCTCGCATTATTCTTGAAAAGG 59.205 41.667 0.00 0.00 46.24 3.11
417 463 4.458989 TGCTCGCATTATTCTTGAAAAGGT 59.541 37.500 0.00 0.00 46.24 3.50
418 464 4.795278 GCTCGCATTATTCTTGAAAAGGTG 59.205 41.667 0.00 0.00 46.24 4.00
419 465 4.732784 TCGCATTATTCTTGAAAAGGTGC 58.267 39.130 0.00 0.00 46.24 5.01
420 466 4.458989 TCGCATTATTCTTGAAAAGGTGCT 59.541 37.500 0.00 0.00 46.24 4.40
421 467 4.795278 CGCATTATTCTTGAAAAGGTGCTC 59.205 41.667 0.00 0.00 46.24 4.26
422 468 5.619757 CGCATTATTCTTGAAAAGGTGCTCA 60.620 40.000 0.00 0.00 46.24 4.26
423 469 6.335777 GCATTATTCTTGAAAAGGTGCTCAT 58.664 36.000 0.00 0.00 46.24 2.90
424 470 7.483307 GCATTATTCTTGAAAAGGTGCTCATA 58.517 34.615 0.00 0.00 46.24 2.15
425 471 7.646922 GCATTATTCTTGAAAAGGTGCTCATAG 59.353 37.037 0.00 0.00 46.24 2.23
426 472 7.630242 TTATTCTTGAAAAGGTGCTCATAGG 57.370 36.000 0.00 0.00 46.24 2.57
427 473 3.347216 TCTTGAAAAGGTGCTCATAGGC 58.653 45.455 0.00 0.00 46.24 3.93
428 474 1.737838 TGAAAAGGTGCTCATAGGCG 58.262 50.000 0.00 0.00 34.52 5.52
429 475 1.003118 TGAAAAGGTGCTCATAGGCGT 59.997 47.619 0.00 0.00 34.52 5.68
430 476 2.235155 TGAAAAGGTGCTCATAGGCGTA 59.765 45.455 0.00 0.00 34.52 4.42
431 477 2.604046 AAAGGTGCTCATAGGCGTAG 57.396 50.000 0.00 0.00 34.52 3.51
432 478 1.776662 AAGGTGCTCATAGGCGTAGA 58.223 50.000 0.00 0.00 34.52 2.59
433 479 1.323412 AGGTGCTCATAGGCGTAGAG 58.677 55.000 7.91 7.91 34.52 2.43
434 480 1.033574 GGTGCTCATAGGCGTAGAGT 58.966 55.000 11.75 0.00 34.52 3.24
435 481 1.269309 GGTGCTCATAGGCGTAGAGTG 60.269 57.143 11.75 0.00 34.52 3.51
436 482 1.405821 GTGCTCATAGGCGTAGAGTGT 59.594 52.381 11.75 0.00 34.52 3.55
437 483 1.405463 TGCTCATAGGCGTAGAGTGTG 59.595 52.381 11.75 1.11 34.52 3.82
438 484 1.405821 GCTCATAGGCGTAGAGTGTGT 59.594 52.381 11.75 0.00 0.00 3.72
439 485 2.796383 GCTCATAGGCGTAGAGTGTGTG 60.796 54.545 11.75 0.56 0.00 3.82
440 486 2.423892 CTCATAGGCGTAGAGTGTGTGT 59.576 50.000 0.00 0.00 0.00 3.72
441 487 2.163613 TCATAGGCGTAGAGTGTGTGTG 59.836 50.000 0.00 0.00 0.00 3.82
442 488 0.242825 TAGGCGTAGAGTGTGTGTGC 59.757 55.000 0.00 0.00 0.00 4.57
443 489 2.372690 GGCGTAGAGTGTGTGTGCG 61.373 63.158 0.00 0.00 0.00 5.34
444 490 1.660575 GCGTAGAGTGTGTGTGCGT 60.661 57.895 0.00 0.00 29.66 5.24
445 491 1.876453 GCGTAGAGTGTGTGTGCGTG 61.876 60.000 0.00 0.00 29.66 5.34
446 492 1.853319 GTAGAGTGTGTGTGCGTGC 59.147 57.895 0.00 0.00 0.00 5.34
447 493 0.874175 GTAGAGTGTGTGTGCGTGCA 60.874 55.000 0.00 0.00 0.00 4.57
448 494 0.033366 TAGAGTGTGTGTGCGTGCAT 59.967 50.000 0.00 0.00 0.00 3.96
449 495 0.815213 AGAGTGTGTGTGCGTGCATT 60.815 50.000 0.00 0.00 0.00 3.56
450 496 0.384725 GAGTGTGTGTGCGTGCATTC 60.385 55.000 0.00 0.00 0.00 2.67
451 497 1.094650 AGTGTGTGTGCGTGCATTCA 61.095 50.000 0.00 0.00 0.00 2.57
452 498 0.040157 GTGTGTGTGCGTGCATTCAT 60.040 50.000 0.00 0.00 0.00 2.57
453 499 1.196581 GTGTGTGTGCGTGCATTCATA 59.803 47.619 0.00 0.00 0.00 2.15
454 500 1.464219 TGTGTGTGCGTGCATTCATAG 59.536 47.619 0.00 0.00 0.00 2.23
455 501 1.085893 TGTGTGCGTGCATTCATAGG 58.914 50.000 0.00 0.00 0.00 2.57
456 502 0.378257 GTGTGCGTGCATTCATAGGG 59.622 55.000 0.00 0.00 0.00 3.53
457 503 0.035534 TGTGCGTGCATTCATAGGGT 60.036 50.000 0.00 0.00 0.00 4.34
458 504 0.378257 GTGCGTGCATTCATAGGGTG 59.622 55.000 0.00 0.00 0.00 4.61
459 505 0.747644 TGCGTGCATTCATAGGGTGG 60.748 55.000 0.00 0.00 0.00 4.61
460 506 0.748005 GCGTGCATTCATAGGGTGGT 60.748 55.000 0.00 0.00 0.00 4.16
461 507 1.016627 CGTGCATTCATAGGGTGGTG 58.983 55.000 0.00 0.00 0.00 4.17
462 508 1.406751 CGTGCATTCATAGGGTGGTGA 60.407 52.381 0.00 0.00 0.00 4.02
463 509 2.292267 GTGCATTCATAGGGTGGTGAG 58.708 52.381 0.00 0.00 0.00 3.51
464 510 1.915489 TGCATTCATAGGGTGGTGAGT 59.085 47.619 0.00 0.00 0.00 3.41
465 511 2.292267 GCATTCATAGGGTGGTGAGTG 58.708 52.381 0.00 0.00 35.80 3.51
466 512 2.356125 GCATTCATAGGGTGGTGAGTGT 60.356 50.000 0.00 0.00 35.34 3.55
467 513 3.118408 GCATTCATAGGGTGGTGAGTGTA 60.118 47.826 0.00 0.00 35.34 2.90
468 514 4.444876 GCATTCATAGGGTGGTGAGTGTAT 60.445 45.833 0.00 0.00 35.34 2.29
469 515 4.753516 TTCATAGGGTGGTGAGTGTATG 57.246 45.455 0.00 0.00 0.00 2.39
470 516 2.434336 TCATAGGGTGGTGAGTGTATGC 59.566 50.000 0.00 0.00 0.00 3.14
471 517 1.945580 TAGGGTGGTGAGTGTATGCA 58.054 50.000 0.00 0.00 0.00 3.96
472 518 1.289160 AGGGTGGTGAGTGTATGCAT 58.711 50.000 3.79 3.79 0.00 3.96
473 519 2.477245 AGGGTGGTGAGTGTATGCATA 58.523 47.619 1.16 1.16 0.00 3.14
474 520 3.048600 AGGGTGGTGAGTGTATGCATAT 58.951 45.455 10.16 0.00 0.00 1.78
475 521 4.231273 AGGGTGGTGAGTGTATGCATATA 58.769 43.478 10.16 4.05 0.00 0.86
476 522 4.846367 AGGGTGGTGAGTGTATGCATATAT 59.154 41.667 10.16 0.00 0.00 0.86
477 523 4.937620 GGGTGGTGAGTGTATGCATATATG 59.062 45.833 10.16 8.45 0.00 1.78
478 524 5.513094 GGGTGGTGAGTGTATGCATATATGT 60.513 44.000 10.16 0.00 0.00 2.29
479 525 6.295632 GGGTGGTGAGTGTATGCATATATGTA 60.296 42.308 10.16 10.24 0.00 2.29
480 526 7.331026 GGTGGTGAGTGTATGCATATATGTAT 58.669 38.462 18.62 18.62 36.98 2.29
481 527 7.278646 GGTGGTGAGTGTATGCATATATGTATG 59.721 40.741 22.27 5.16 40.56 2.39
482 528 8.034804 GTGGTGAGTGTATGCATATATGTATGA 58.965 37.037 22.27 9.18 40.12 2.15
483 529 8.253113 TGGTGAGTGTATGCATATATGTATGAG 58.747 37.037 22.27 0.00 40.12 2.90
484 530 7.223582 GGTGAGTGTATGCATATATGTATGAGC 59.776 40.741 22.27 14.01 40.12 4.26
485 531 6.974622 TGAGTGTATGCATATATGTATGAGCG 59.025 38.462 22.27 0.00 40.12 5.03
486 532 5.750547 AGTGTATGCATATATGTATGAGCGC 59.249 40.000 22.27 17.65 40.12 5.92
487 533 5.750547 GTGTATGCATATATGTATGAGCGCT 59.249 40.000 22.27 11.27 40.12 5.92
488 534 6.256539 GTGTATGCATATATGTATGAGCGCTT 59.743 38.462 22.27 0.00 40.12 4.68
489 535 5.729974 ATGCATATATGTATGAGCGCTTG 57.270 39.130 13.26 2.09 40.12 4.01
490 536 3.371898 TGCATATATGTATGAGCGCTTGC 59.628 43.478 13.26 14.13 40.12 4.01
491 537 3.542875 GCATATATGTATGAGCGCTTGCG 60.543 47.826 13.26 10.90 40.12 4.85
492 538 2.154854 ATATGTATGAGCGCTTGCGT 57.845 45.000 13.26 3.97 45.69 5.24
493 539 1.487482 TATGTATGAGCGCTTGCGTC 58.513 50.000 13.26 12.36 45.69 5.19
494 540 0.179100 ATGTATGAGCGCTTGCGTCT 60.179 50.000 13.26 13.17 45.69 4.18
495 541 1.078201 TGTATGAGCGCTTGCGTCTG 61.078 55.000 13.26 0.00 45.69 3.51
496 542 1.078759 GTATGAGCGCTTGCGTCTGT 61.079 55.000 13.26 7.66 45.69 3.41
497 543 0.454196 TATGAGCGCTTGCGTCTGTA 59.546 50.000 13.26 6.26 45.69 2.74
498 544 1.078759 ATGAGCGCTTGCGTCTGTAC 61.079 55.000 13.26 0.00 45.69 2.90
499 545 1.444553 GAGCGCTTGCGTCTGTACT 60.445 57.895 13.26 3.73 45.69 2.73
500 546 1.678269 GAGCGCTTGCGTCTGTACTG 61.678 60.000 13.26 0.00 45.69 2.74
501 547 2.022129 GCGCTTGCGTCTGTACTGT 61.022 57.895 16.38 0.00 0.00 3.55
502 548 1.775344 CGCTTGCGTCTGTACTGTG 59.225 57.895 6.86 0.00 0.00 3.66
503 549 0.939577 CGCTTGCGTCTGTACTGTGT 60.940 55.000 6.86 0.00 0.00 3.72
504 550 1.217882 GCTTGCGTCTGTACTGTGTT 58.782 50.000 0.00 0.00 0.00 3.32
505 551 2.400399 GCTTGCGTCTGTACTGTGTTA 58.600 47.619 0.00 0.00 0.00 2.41
506 552 2.798283 GCTTGCGTCTGTACTGTGTTAA 59.202 45.455 0.00 0.00 0.00 2.01
507 553 3.432252 GCTTGCGTCTGTACTGTGTTAAT 59.568 43.478 0.00 0.00 0.00 1.40
508 554 4.624024 GCTTGCGTCTGTACTGTGTTAATA 59.376 41.667 0.00 0.00 0.00 0.98
509 555 5.220228 GCTTGCGTCTGTACTGTGTTAATAG 60.220 44.000 0.00 0.00 0.00 1.73
510 556 5.632244 TGCGTCTGTACTGTGTTAATAGA 57.368 39.130 0.00 0.00 0.00 1.98
511 557 6.016213 TGCGTCTGTACTGTGTTAATAGAA 57.984 37.500 0.00 0.00 0.00 2.10
512 558 6.448852 TGCGTCTGTACTGTGTTAATAGAAA 58.551 36.000 0.00 0.00 0.00 2.52
513 559 6.364165 TGCGTCTGTACTGTGTTAATAGAAAC 59.636 38.462 0.00 0.00 0.00 2.78
514 560 6.364165 GCGTCTGTACTGTGTTAATAGAAACA 59.636 38.462 0.00 0.00 37.03 2.83
515 561 7.095940 GCGTCTGTACTGTGTTAATAGAAACAA 60.096 37.037 0.00 0.00 40.85 2.83
516 562 8.757789 CGTCTGTACTGTGTTAATAGAAACAAA 58.242 33.333 0.00 0.00 40.85 2.83
523 569 8.700973 ACTGTGTTAATAGAAACAAATTTGGGT 58.299 29.630 21.74 9.18 40.85 4.51
524 570 9.541143 CTGTGTTAATAGAAACAAATTTGGGTT 57.459 29.630 21.74 14.77 40.85 4.11
525 571 9.892130 TGTGTTAATAGAAACAAATTTGGGTTT 57.108 25.926 21.74 13.70 40.85 3.27
538 584 5.813080 ATTTGGGTTTACAGTAGCGAATC 57.187 39.130 0.00 0.00 0.00 2.52
544 590 5.221382 GGGTTTACAGTAGCGAATCTATCCA 60.221 44.000 0.00 0.00 0.00 3.41
605 651 7.693969 ACAAGAGACAATCCTGGAATTTTAG 57.306 36.000 0.00 0.00 0.00 1.85
614 660 5.165961 TCCTGGAATTTTAGACTCCACTG 57.834 43.478 0.00 0.00 34.26 3.66
629 687 4.008330 CTCCACTGACAAAGATGATGCTT 58.992 43.478 0.00 0.00 0.00 3.91
651 709 0.100503 CCAATAAGCTTTTCGGCCGG 59.899 55.000 27.83 10.44 0.00 6.13
676 734 2.143876 TCTTTTCCCCTATTGGCTGC 57.856 50.000 0.00 0.00 0.00 5.25
704 762 1.475213 GGACCTAGCAATTTCCTCCCG 60.475 57.143 0.00 0.00 0.00 5.14
734 793 1.795286 GCCAGCAGTACGATGATAAGC 59.205 52.381 4.85 0.00 30.38 3.09
744 803 2.288457 ACGATGATAAGCATGAGGACCG 60.288 50.000 0.00 0.00 37.34 4.79
766 826 3.146847 GAGACTGGTCAACCCGAAAAAT 58.853 45.455 3.51 0.00 35.15 1.82
769 829 4.041198 AGACTGGTCAACCCGAAAAATCTA 59.959 41.667 3.51 0.00 35.15 1.98
789 855 0.591659 GGTTTCGCTGGGTCAAACTC 59.408 55.000 8.29 0.00 31.80 3.01
821 889 3.940723 GCATCAGCAATTCAGCTCC 57.059 52.632 0.00 0.00 44.54 4.70
963 1038 1.272490 TCCTTGCACTCCTCGTACTTG 59.728 52.381 0.00 0.00 0.00 3.16
1013 1098 3.680620 TAGCCATGCAGGACGGTGC 62.681 63.158 0.00 0.00 44.27 5.01
1343 1437 0.666274 TGCAAGAGAAGGTGCGTACG 60.666 55.000 11.84 11.84 43.93 3.67
1344 1438 0.666577 GCAAGAGAAGGTGCGTACGT 60.667 55.000 17.90 0.00 0.00 3.57
1345 1439 1.401931 GCAAGAGAAGGTGCGTACGTA 60.402 52.381 17.90 10.06 0.00 3.57
1346 1440 2.248487 CAAGAGAAGGTGCGTACGTAC 58.752 52.381 25.76 25.76 0.00 3.67
1482 1860 9.741647 ATTTGTGTCTCTGAATTCTTTTTCTTC 57.258 29.630 7.05 0.00 0.00 2.87
1523 1901 6.256104 TCAAATCCATGCTCAAAATATTTGCG 59.744 34.615 0.39 0.00 34.45 4.85
1545 1923 5.739161 GCGTGTTTTGGTCTCAAATATGATC 59.261 40.000 0.00 0.00 41.84 2.92
1550 1928 4.607293 TGGTCTCAAATATGATCCTCCG 57.393 45.455 0.00 0.00 34.37 4.63
1561 1939 3.149436 ATCCTCCGTCGGATCCATT 57.851 52.632 15.81 0.00 39.60 3.16
1568 1946 4.578928 CCTCCGTCGGATCCATTTTAATTT 59.421 41.667 15.81 0.00 0.00 1.82
1574 1952 4.274950 TCGGATCCATTTTAATTTCTCGCC 59.725 41.667 13.41 0.00 0.00 5.54
1581 1959 7.414436 TCCATTTTAATTTCTCGCCGATTTAG 58.586 34.615 0.00 0.00 0.00 1.85
1604 1984 3.282021 ACAAAATGGATCGGATGGAGTG 58.718 45.455 0.00 0.00 0.00 3.51
1619 1999 4.386867 TGGAGTGGCTTTATTACTCTCG 57.613 45.455 0.00 0.00 40.43 4.04
1666 2048 1.696063 GCTATGGCACCATCAACCAT 58.304 50.000 5.20 0.00 45.94 3.55
1667 2049 1.338973 GCTATGGCACCATCAACCATG 59.661 52.381 5.20 0.00 43.93 3.66
1670 2052 2.491152 GCACCATCAACCATGCGG 59.509 61.111 0.00 0.00 38.77 5.69
1676 2058 2.092429 ACCATCAACCATGCGGAGTAAT 60.092 45.455 0.00 0.00 35.59 1.89
1678 2060 4.133820 CCATCAACCATGCGGAGTAATAA 58.866 43.478 0.00 0.00 35.59 1.40
1679 2061 4.024048 CCATCAACCATGCGGAGTAATAAC 60.024 45.833 0.00 0.00 35.59 1.89
1680 2062 4.209307 TCAACCATGCGGAGTAATAACA 57.791 40.909 0.00 0.00 35.59 2.41
1682 2064 4.574421 TCAACCATGCGGAGTAATAACATG 59.426 41.667 0.00 0.00 38.24 3.21
1683 2065 2.878406 ACCATGCGGAGTAATAACATGC 59.122 45.455 0.00 0.00 37.41 4.06
1684 2066 3.141398 CCATGCGGAGTAATAACATGCT 58.859 45.455 0.00 0.00 37.41 3.79
1685 2067 4.202315 ACCATGCGGAGTAATAACATGCTA 60.202 41.667 0.00 0.00 37.41 3.49
1686 2068 4.754618 CCATGCGGAGTAATAACATGCTAA 59.245 41.667 0.00 0.00 37.41 3.09
1739 2134 6.088016 AGTAACACGGTGTTAGACATGTTA 57.912 37.500 28.71 8.36 42.78 2.41
1768 2163 2.837947 TGTCCATCCTTCTCCATCAGT 58.162 47.619 0.00 0.00 0.00 3.41
1792 2187 6.185852 TCAGACGTTTGTATGAATCGACTA 57.814 37.500 5.93 0.00 42.97 2.59
1809 2204 7.881643 ATCGACTAGAGCATGATTCAATAAC 57.118 36.000 0.00 0.00 0.00 1.89
1815 2210 8.478066 ACTAGAGCATGATTCAATAACACACTA 58.522 33.333 0.00 0.00 0.00 2.74
1851 2251 1.945394 GTATGCTTGCCATCCAGACAG 59.055 52.381 0.00 0.00 35.34 3.51
1852 2252 0.395311 ATGCTTGCCATCCAGACAGG 60.395 55.000 0.00 0.00 39.47 4.00
1853 2253 1.751927 GCTTGCCATCCAGACAGGG 60.752 63.158 0.00 0.00 38.24 4.45
1854 2254 1.993653 CTTGCCATCCAGACAGGGA 59.006 57.895 0.00 0.00 42.21 4.20
1856 2256 1.770658 CTTGCCATCCAGACAGGGATA 59.229 52.381 0.00 0.00 45.91 2.59
1857 2257 2.123018 TGCCATCCAGACAGGGATAT 57.877 50.000 0.00 0.00 45.91 1.63
1858 2258 1.980765 TGCCATCCAGACAGGGATATC 59.019 52.381 0.00 0.00 45.91 1.63
1859 2259 1.980765 GCCATCCAGACAGGGATATCA 59.019 52.381 4.83 0.00 45.91 2.15
1860 2260 2.373169 GCCATCCAGACAGGGATATCAA 59.627 50.000 4.83 0.00 45.91 2.57
1861 2261 3.808618 GCCATCCAGACAGGGATATCAAC 60.809 52.174 4.83 0.00 45.91 3.18
1862 2262 3.649981 CCATCCAGACAGGGATATCAACT 59.350 47.826 4.83 0.00 45.91 3.16
1863 2263 4.103785 CCATCCAGACAGGGATATCAACTT 59.896 45.833 4.83 0.00 45.91 2.66
1864 2264 4.760530 TCCAGACAGGGATATCAACTTG 57.239 45.455 4.83 0.00 38.24 3.16
1929 2329 1.860950 CTATGGTTCATCAACGCCTCG 59.139 52.381 0.00 0.00 32.68 4.63
1998 2402 7.796054 ACTACAAGAGAATAACACCTGCATAT 58.204 34.615 0.00 0.00 0.00 1.78
1999 2403 8.924303 ACTACAAGAGAATAACACCTGCATATA 58.076 33.333 0.00 0.00 0.00 0.86
2000 2404 9.935241 CTACAAGAGAATAACACCTGCATATAT 57.065 33.333 0.00 0.00 0.00 0.86
2027 2431 9.597170 AATAGAGTTAGTTAACCTTTTCCGATC 57.403 33.333 0.88 0.00 36.88 3.69
2028 2432 7.001099 AGAGTTAGTTAACCTTTTCCGATCA 57.999 36.000 0.88 0.00 36.88 2.92
2070 2474 7.689953 GCATAGCCAAATTGACAGATAAAAG 57.310 36.000 0.00 0.00 0.00 2.27
2076 2480 7.121315 AGCCAAATTGACAGATAAAAGGAGTAC 59.879 37.037 0.00 0.00 0.00 2.73
2077 2481 7.121315 GCCAAATTGACAGATAAAAGGAGTACT 59.879 37.037 0.00 0.00 0.00 2.73
2078 2482 8.669243 CCAAATTGACAGATAAAAGGAGTACTC 58.331 37.037 14.87 14.87 0.00 2.59
2109 2513 4.033817 CAGCAAGAATTAAAGAGCGGAGAG 59.966 45.833 0.00 0.00 0.00 3.20
2128 2536 6.220201 GGAGAGATCTAATGGAAGTTAGTGC 58.780 44.000 0.00 0.00 34.16 4.40
2209 2629 7.593825 AGAAACTAAATACACAGTCCAAATGC 58.406 34.615 0.00 0.00 0.00 3.56
2220 2640 4.082571 ACAGTCCAAATGCTTATCACTTGC 60.083 41.667 0.00 0.00 31.04 4.01
2243 2695 5.067023 GCTCCTATGGAAGTTTTCATTCCTG 59.933 44.000 6.31 0.00 45.45 3.86
2323 2783 4.760204 AGATTTTTGTCTGAAAGGTACCCG 59.240 41.667 8.74 0.00 0.00 5.28
2530 2994 1.885887 CTGCCAAGATGGACCGAAAAA 59.114 47.619 0.00 0.00 40.96 1.94
2623 3087 2.892425 GACATCCTCGGCGCCAAG 60.892 66.667 28.98 19.23 0.00 3.61
2635 3099 0.891904 GCGCCAAGTTCCCAAGGTTA 60.892 55.000 0.00 0.00 0.00 2.85
2655 3119 6.828672 GGTTAGTGACCGATTTTCTTTACAG 58.171 40.000 0.00 0.00 39.00 2.74
2657 3121 7.172019 GGTTAGTGACCGATTTTCTTTACAGAA 59.828 37.037 0.00 0.00 39.00 3.02
2658 3122 8.553696 GTTAGTGACCGATTTTCTTTACAGAAA 58.446 33.333 0.00 0.00 45.63 2.52
2702 3200 9.632638 AGCTGGTGTGTAATTTCATAATATTCT 57.367 29.630 0.00 0.00 0.00 2.40
2718 3216 9.282247 CATAATATTCTAGATTTTTGCCGATGC 57.718 33.333 0.00 0.00 38.26 3.91
2719 3217 7.516198 AATATTCTAGATTTTTGCCGATGCT 57.484 32.000 0.00 0.00 38.71 3.79
2720 3218 4.882671 TTCTAGATTTTTGCCGATGCTC 57.117 40.909 0.00 0.00 38.71 4.26
2721 3219 3.872696 TCTAGATTTTTGCCGATGCTCA 58.127 40.909 0.00 0.00 38.71 4.26
2723 3221 3.431922 AGATTTTTGCCGATGCTCATG 57.568 42.857 0.00 0.00 38.71 3.07
2725 3223 3.444742 AGATTTTTGCCGATGCTCATGAA 59.555 39.130 0.00 0.00 38.71 2.57
2726 3224 2.634982 TTTTGCCGATGCTCATGAAC 57.365 45.000 0.00 0.00 38.71 3.18
2727 3225 1.532523 TTTGCCGATGCTCATGAACA 58.467 45.000 0.40 0.40 38.71 3.18
2728 3226 0.804364 TTGCCGATGCTCATGAACAC 59.196 50.000 0.00 0.00 38.71 3.32
2729 3227 0.321475 TGCCGATGCTCATGAACACA 60.321 50.000 0.00 0.00 38.71 3.72
2730 3228 1.019673 GCCGATGCTCATGAACACAT 58.980 50.000 0.00 3.15 33.53 3.21
2731 3229 1.402968 GCCGATGCTCATGAACACATT 59.597 47.619 0.00 0.00 33.53 2.71
2733 3231 3.303593 GCCGATGCTCATGAACACATTAG 60.304 47.826 0.00 2.69 33.53 1.73
2734 3232 4.122046 CCGATGCTCATGAACACATTAGA 58.878 43.478 0.00 0.00 0.00 2.10
2736 3234 5.928264 CCGATGCTCATGAACACATTAGATA 59.072 40.000 0.00 0.00 0.00 1.98
2737 3235 6.090493 CCGATGCTCATGAACACATTAGATAG 59.910 42.308 0.00 0.00 0.00 2.08
2738 3236 6.865205 CGATGCTCATGAACACATTAGATAGA 59.135 38.462 0.00 0.00 0.00 1.98
2739 3237 7.148836 CGATGCTCATGAACACATTAGATAGAC 60.149 40.741 0.00 0.00 0.00 2.59
2740 3238 6.877236 TGCTCATGAACACATTAGATAGACA 58.123 36.000 0.00 0.00 0.00 3.41
2741 3239 7.330262 TGCTCATGAACACATTAGATAGACAA 58.670 34.615 0.00 0.00 0.00 3.18
2743 3241 8.834465 GCTCATGAACACATTAGATAGACAAAT 58.166 33.333 0.00 0.00 0.00 2.32
2746 3244 9.229784 CATGAACACATTAGATAGACAAATTGC 57.770 33.333 0.00 0.00 0.00 3.56
2747 3245 8.334263 TGAACACATTAGATAGACAAATTGCA 57.666 30.769 0.00 0.00 0.00 4.08
2750 3248 7.198390 ACACATTAGATAGACAAATTGCATGC 58.802 34.615 11.82 11.82 0.00 4.06
2751 3249 7.148035 ACACATTAGATAGACAAATTGCATGCA 60.148 33.333 18.46 18.46 0.00 3.96
2752 3250 7.703197 CACATTAGATAGACAAATTGCATGCAA 59.297 33.333 33.57 33.57 40.47 4.08
2754 3252 9.089601 CATTAGATAGACAAATTGCATGCAAAA 57.910 29.630 34.84 20.25 39.55 2.44
2755 3253 9.656040 ATTAGATAGACAAATTGCATGCAAAAA 57.344 25.926 34.84 15.38 39.55 1.94
2831 3643 4.081752 AGAGACAGTATTGACCAGCTTCTG 60.082 45.833 0.00 0.00 0.00 3.02
3153 3965 2.753043 GTGGAGACCGACGGGCTA 60.753 66.667 25.54 4.79 43.92 3.93
3351 4163 2.879462 GGCTACTTCGCCGTGTCG 60.879 66.667 0.00 0.00 40.79 4.35
3408 4220 4.477975 CTCGCCGAGGTCGTGTCC 62.478 72.222 6.13 0.00 37.74 4.02
3448 4260 2.278013 CCGGCTTCGACTACTCGC 60.278 66.667 0.00 0.00 39.96 5.03
3455 4267 1.736126 CTTCGACTACTCGCTGTACCA 59.264 52.381 0.00 0.00 39.96 3.25
3456 4268 1.366679 TCGACTACTCGCTGTACCAG 58.633 55.000 0.00 0.00 39.96 4.00
3457 4269 1.085091 CGACTACTCGCTGTACCAGT 58.915 55.000 0.00 0.00 33.43 4.00
3458 4270 2.094026 TCGACTACTCGCTGTACCAGTA 60.094 50.000 0.00 0.00 39.96 2.74
3459 4271 2.030213 CGACTACTCGCTGTACCAGTAC 59.970 54.545 0.86 0.86 33.43 2.73
3460 4272 2.354199 GACTACTCGCTGTACCAGTACC 59.646 54.545 5.53 0.00 35.26 3.34
3461 4273 2.290514 ACTACTCGCTGTACCAGTACCA 60.291 50.000 5.53 0.00 35.26 3.25
3462 4274 0.886563 ACTCGCTGTACCAGTACCAC 59.113 55.000 5.53 0.00 35.26 4.16
3463 4275 0.179171 CTCGCTGTACCAGTACCACG 60.179 60.000 5.53 8.91 35.26 4.94
3464 4276 1.153901 CGCTGTACCAGTACCACGG 60.154 63.158 5.53 0.00 35.26 4.94
3465 4277 1.447314 GCTGTACCAGTACCACGGC 60.447 63.158 5.53 0.00 37.40 5.68
3466 4278 1.217244 CTGTACCAGTACCACGGCC 59.783 63.158 5.53 0.00 35.26 6.13
3471 4283 2.434884 CAGTACCACGGCCTGCAG 60.435 66.667 6.78 6.78 0.00 4.41
3497 4309 4.742201 CCAGTACGCGCACCTGCT 62.742 66.667 5.73 0.00 39.32 4.24
3541 4374 2.141011 CTCCTCCCATGGCCAACACA 62.141 60.000 10.96 0.00 0.00 3.72
3566 4399 1.482955 CGTGAACGCTCTGTGAACG 59.517 57.895 0.00 0.00 34.97 3.95
3567 4400 0.933047 CGTGAACGCTCTGTGAACGA 60.933 55.000 0.00 0.00 40.68 3.85
3569 4402 1.071436 GTGAACGCTCTGTGAACGAAC 60.071 52.381 0.00 0.00 0.00 3.95
3571 4404 1.190323 GAACGCTCTGTGAACGAACTG 59.810 52.381 0.00 0.00 0.00 3.16
3572 4405 0.384309 ACGCTCTGTGAACGAACTGA 59.616 50.000 0.00 0.00 0.00 3.41
3573 4406 1.202371 ACGCTCTGTGAACGAACTGAA 60.202 47.619 0.00 0.00 0.00 3.02
3574 4407 1.453524 CGCTCTGTGAACGAACTGAAG 59.546 52.381 0.00 0.00 0.00 3.02
3575 4408 1.193426 GCTCTGTGAACGAACTGAAGC 59.807 52.381 0.00 0.00 0.00 3.86
3576 4409 2.473816 CTCTGTGAACGAACTGAAGCA 58.526 47.619 0.00 0.00 0.00 3.91
3577 4410 3.062763 CTCTGTGAACGAACTGAAGCAT 58.937 45.455 0.00 0.00 0.00 3.79
3578 4411 2.802247 TCTGTGAACGAACTGAAGCATG 59.198 45.455 0.00 0.00 0.00 4.06
3579 4412 2.802247 CTGTGAACGAACTGAAGCATGA 59.198 45.455 0.00 0.00 0.00 3.07
3580 4413 3.402110 TGTGAACGAACTGAAGCATGAT 58.598 40.909 0.00 0.00 0.00 2.45
3581 4414 3.814842 TGTGAACGAACTGAAGCATGATT 59.185 39.130 0.00 0.00 0.00 2.57
3582 4415 4.994217 TGTGAACGAACTGAAGCATGATTA 59.006 37.500 0.00 0.00 0.00 1.75
3583 4416 5.643348 TGTGAACGAACTGAAGCATGATTAT 59.357 36.000 0.00 0.00 0.00 1.28
3584 4417 6.149308 TGTGAACGAACTGAAGCATGATTATT 59.851 34.615 0.00 0.00 0.00 1.40
3585 4418 7.333174 TGTGAACGAACTGAAGCATGATTATTA 59.667 33.333 0.00 0.00 0.00 0.98
3586 4419 8.338259 GTGAACGAACTGAAGCATGATTATTAT 58.662 33.333 0.00 0.00 0.00 1.28
3587 4420 8.337532 TGAACGAACTGAAGCATGATTATTATG 58.662 33.333 0.00 0.00 0.00 1.90
3588 4421 8.437360 AACGAACTGAAGCATGATTATTATGA 57.563 30.769 0.00 0.00 0.00 2.15
3592 4425 9.661187 GAACTGAAGCATGATTATTATGAACTG 57.339 33.333 0.00 0.00 0.00 3.16
3594 4427 9.836864 ACTGAAGCATGATTATTATGAACTGTA 57.163 29.630 0.00 0.00 0.00 2.74
3621 4454 5.803020 AAACAGTCGAATTATTCAGCCTC 57.197 39.130 5.76 0.00 0.00 4.70
3622 4455 3.448686 ACAGTCGAATTATTCAGCCTCG 58.551 45.455 5.76 0.00 0.00 4.63
3623 4456 2.219674 CAGTCGAATTATTCAGCCTCGC 59.780 50.000 5.76 0.00 0.00 5.03
3630 4472 5.061064 CGAATTATTCAGCCTCGCTATGTAC 59.939 44.000 5.76 0.00 36.40 2.90
3638 4480 7.228314 TCAGCCTCGCTATGTACTATTAATT 57.772 36.000 0.00 0.00 36.40 1.40
3662 4504 7.250445 TCATCATCACCATCAGAAATTTACG 57.750 36.000 0.00 0.00 0.00 3.18
3665 4507 5.584649 TCATCACCATCAGAAATTTACGTCC 59.415 40.000 0.00 0.00 0.00 4.79
3666 4508 4.900684 TCACCATCAGAAATTTACGTCCA 58.099 39.130 0.00 0.00 0.00 4.02
3673 4640 3.941483 CAGAAATTTACGTCCAGCCTCAT 59.059 43.478 0.00 0.00 0.00 2.90
3686 4653 5.469421 GTCCAGCCTCATCATTTCTTAGATG 59.531 44.000 0.00 0.00 42.25 2.90
3688 4655 6.044054 TCCAGCCTCATCATTTCTTAGATGAT 59.956 38.462 5.67 0.00 46.68 2.45
3696 4663 5.178061 TCATTTCTTAGATGATGTGCGTGT 58.822 37.500 6.17 0.00 0.00 4.49
3697 4664 6.337356 TCATTTCTTAGATGATGTGCGTGTA 58.663 36.000 6.17 0.00 0.00 2.90
3703 4672 6.863126 TCTTAGATGATGTGCGTGTATGTATG 59.137 38.462 0.00 0.00 0.00 2.39
3704 4673 3.742882 AGATGATGTGCGTGTATGTATGC 59.257 43.478 0.00 0.00 0.00 3.14
3705 4674 2.898705 TGATGTGCGTGTATGTATGCA 58.101 42.857 0.00 0.00 40.08 3.96
3723 4692 5.835113 ATGCATACTTAAACGCCATTTCT 57.165 34.783 0.00 0.00 0.00 2.52
3726 4695 5.356751 TGCATACTTAAACGCCATTTCTCAT 59.643 36.000 0.00 0.00 0.00 2.90
3732 4701 6.761714 ACTTAAACGCCATTTCTCATAGGTAG 59.238 38.462 0.00 0.00 0.00 3.18
3733 4702 4.755266 AACGCCATTTCTCATAGGTAGT 57.245 40.909 0.00 0.00 0.00 2.73
3735 4704 6.420913 AACGCCATTTCTCATAGGTAGTAT 57.579 37.500 0.00 0.00 0.00 2.12
3738 4707 5.864474 CGCCATTTCTCATAGGTAGTATCAC 59.136 44.000 0.00 0.00 0.00 3.06
3739 4708 6.294787 CGCCATTTCTCATAGGTAGTATCACT 60.295 42.308 0.00 0.00 0.00 3.41
3741 4710 8.754080 GCCATTTCTCATAGGTAGTATCACTAT 58.246 37.037 0.00 0.00 32.65 2.12
3745 4714 9.521841 TTTCTCATAGGTAGTATCACTATCAGG 57.478 37.037 0.00 0.00 34.28 3.86
3760 4731 3.959495 ATCAGGTATTCCCAAGTGCAT 57.041 42.857 0.00 0.00 34.66 3.96
3792 4763 3.215642 TCAACGATGACACAGCAGG 57.784 52.632 0.00 0.00 0.00 4.85
3793 4764 0.678950 TCAACGATGACACAGCAGGA 59.321 50.000 0.00 0.00 0.00 3.86
3794 4765 1.276138 TCAACGATGACACAGCAGGAT 59.724 47.619 0.00 0.00 0.00 3.24
3796 5325 0.179127 ACGATGACACAGCAGGATCG 60.179 55.000 0.00 0.00 41.29 3.69
3798 5327 1.565305 GATGACACAGCAGGATCGTC 58.435 55.000 0.00 0.00 0.00 4.20
3802 5331 0.317160 ACACAGCAGGATCGTCGAAA 59.683 50.000 0.00 0.00 0.00 3.46
3807 5336 3.186909 CAGCAGGATCGTCGAAACATAA 58.813 45.455 0.00 0.00 0.00 1.90
3811 5340 4.034048 GCAGGATCGTCGAAACATAAACAT 59.966 41.667 0.00 0.00 0.00 2.71
3814 5343 7.518370 GCAGGATCGTCGAAACATAAACATAAT 60.518 37.037 0.00 0.00 0.00 1.28
3815 5344 8.004344 CAGGATCGTCGAAACATAAACATAATC 58.996 37.037 0.00 0.00 0.00 1.75
3820 5349 7.953173 TCGTCGAAACATAAACATAATCACAAC 59.047 33.333 0.00 0.00 0.00 3.32
3821 5350 7.742525 CGTCGAAACATAAACATAATCACAACA 59.257 33.333 0.00 0.00 0.00 3.33
3822 5351 9.554724 GTCGAAACATAAACATAATCACAACAT 57.445 29.630 0.00 0.00 0.00 2.71
3857 5386 8.546597 AAAATAAACATAAGCACAAATGGGAC 57.453 30.769 0.00 0.00 0.00 4.46
3858 5387 4.535526 AAACATAAGCACAAATGGGACC 57.464 40.909 0.00 0.00 0.00 4.46
3859 5388 3.168035 ACATAAGCACAAATGGGACCA 57.832 42.857 0.00 0.00 0.00 4.02
3860 5389 3.091545 ACATAAGCACAAATGGGACCAG 58.908 45.455 0.00 0.00 0.00 4.00
3861 5390 1.544724 TAAGCACAAATGGGACCAGC 58.455 50.000 0.00 0.00 0.00 4.85
3863 5392 0.251922 AGCACAAATGGGACCAGCAT 60.252 50.000 0.00 0.00 0.00 3.79
3864 5393 0.609662 GCACAAATGGGACCAGCATT 59.390 50.000 0.00 0.00 0.00 3.56
3866 5395 2.690786 CACAAATGGGACCAGCATTTG 58.309 47.619 23.82 23.82 46.10 2.32
3867 5396 2.299582 CACAAATGGGACCAGCATTTGA 59.700 45.455 28.62 0.00 44.51 2.69
3868 5397 2.299867 ACAAATGGGACCAGCATTTGAC 59.700 45.455 28.62 0.00 44.51 3.18
3873 6960 1.895131 GGGACCAGCATTTGACAACAT 59.105 47.619 0.00 0.00 0.00 2.71
3876 6963 1.687660 ACCAGCATTTGACAACATGCA 59.312 42.857 24.39 0.00 42.06 3.96
3878 6965 2.670905 CCAGCATTTGACAACATGCATG 59.329 45.455 25.09 25.09 42.06 4.06
3880 6969 3.612423 CAGCATTTGACAACATGCATGAG 59.388 43.478 32.75 24.30 42.06 2.90
4001 7091 8.747538 ACCTCTAAAAATACATATGTCCAACC 57.252 34.615 12.68 0.00 0.00 3.77
4048 7138 5.300752 TCCTCACAACAGCTTTTCTTCTAG 58.699 41.667 0.00 0.00 0.00 2.43
4072 7162 1.950216 TCTCCGATCCTGAGAATGACG 59.050 52.381 7.05 0.00 35.98 4.35
4108 7198 3.740044 TTCACGCCGAAGAAATCATTC 57.260 42.857 0.00 0.00 35.70 2.67
4113 7203 0.316196 CCGAAGAAATCATTCGCCGC 60.316 55.000 2.70 0.00 46.23 6.53
4128 7218 2.286523 CCGCCAGGACCAGAAGACT 61.287 63.158 0.00 0.00 41.02 3.24
4130 7220 0.671781 CGCCAGGACCAGAAGACTTG 60.672 60.000 0.00 0.00 0.00 3.16
4131 7221 0.957888 GCCAGGACCAGAAGACTTGC 60.958 60.000 0.00 0.00 0.00 4.01
4133 7223 0.671781 CAGGACCAGAAGACTTGCCG 60.672 60.000 0.00 0.00 0.00 5.69
4155 7249 3.864944 GTCGCGACGGATTTTCCA 58.135 55.556 25.19 0.00 35.91 3.53
4163 7257 2.010497 GACGGATTTTCCAAGCTCCTC 58.990 52.381 0.00 0.00 35.91 3.71
4193 7293 7.363705 CCTGCAATCCAGACCAACAATTAATTA 60.364 37.037 0.00 0.00 44.64 1.40
4195 7295 7.816995 TGCAATCCAGACCAACAATTAATTAAC 59.183 33.333 0.00 0.00 0.00 2.01
4293 7394 2.413371 CGCAGCTAACAGGAAAGCTTTC 60.413 50.000 27.68 27.68 46.82 2.62
4300 7401 5.295540 GCTAACAGGAAAGCTTTCTATCCAG 59.704 44.000 32.28 24.22 37.35 3.86
4301 7402 4.917906 ACAGGAAAGCTTTCTATCCAGT 57.082 40.909 32.28 19.91 37.35 4.00
4303 7404 4.195416 CAGGAAAGCTTTCTATCCAGTCC 58.805 47.826 32.28 17.46 37.35 3.85
4304 7405 3.846588 AGGAAAGCTTTCTATCCAGTCCA 59.153 43.478 32.28 0.00 37.35 4.02
4305 7406 4.476479 AGGAAAGCTTTCTATCCAGTCCAT 59.524 41.667 32.28 4.07 37.35 3.41
4339 7596 6.669125 ATTCAACCAATGTTTTCCAGATGA 57.331 33.333 0.00 0.00 30.42 2.92
4399 7656 4.620184 CCTTTACGACGACTAACAGGAAAG 59.380 45.833 0.00 0.00 0.00 2.62
4415 7672 1.463444 GAAAGCTTTGTATCCACGCGT 59.537 47.619 18.30 5.58 0.00 6.01
4418 7675 0.370273 GCTTTGTATCCACGCGTCTG 59.630 55.000 9.86 3.30 0.00 3.51
4432 7689 1.428448 CGTCTGGATCAGCAAACGAA 58.572 50.000 0.00 0.00 33.21 3.85
4498 7755 2.047560 AAACACGCCTCGCTACCC 60.048 61.111 0.00 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 101 6.756299 ACCACTGCACAAAATTCAAATTTT 57.244 29.167 7.47 7.47 46.42 1.82
119 120 2.052104 GCCAAGGCCATGGTACCAC 61.052 63.158 27.10 7.33 42.75 4.16
154 155 6.040842 ACAAAATGAAGTGTGATGCCTAGTTT 59.959 34.615 0.00 0.00 0.00 2.66
192 200 6.632900 GGAGCCTTCCTTAAAAGTAGCATACT 60.633 42.308 0.00 0.00 46.91 2.12
230 269 1.377987 GCCATCGCAAGGGGTACAA 60.378 57.895 0.00 0.00 35.11 2.41
233 272 1.978455 AATCGCCATCGCAAGGGGTA 61.978 55.000 0.00 0.00 39.83 3.69
245 284 2.092429 AGAAATAGCTGGGAAATCGCCA 60.092 45.455 0.00 0.00 0.00 5.69
294 338 4.033472 CCCAAATTTGTCGTTGTGTTTTCC 59.967 41.667 16.73 0.00 0.00 3.13
295 339 4.627900 ACCCAAATTTGTCGTTGTGTTTTC 59.372 37.500 16.73 0.00 0.00 2.29
329 375 4.588899 TCTAACCATCCAACCACAGATTG 58.411 43.478 0.00 0.00 0.00 2.67
330 376 4.324563 CCTCTAACCATCCAACCACAGATT 60.325 45.833 0.00 0.00 0.00 2.40
331 377 3.200825 CCTCTAACCATCCAACCACAGAT 59.799 47.826 0.00 0.00 0.00 2.90
332 378 2.571653 CCTCTAACCATCCAACCACAGA 59.428 50.000 0.00 0.00 0.00 3.41
333 379 2.356125 CCCTCTAACCATCCAACCACAG 60.356 54.545 0.00 0.00 0.00 3.66
334 380 1.633432 CCCTCTAACCATCCAACCACA 59.367 52.381 0.00 0.00 0.00 4.17
335 381 1.913419 TCCCTCTAACCATCCAACCAC 59.087 52.381 0.00 0.00 0.00 4.16
336 382 2.352561 TCCCTCTAACCATCCAACCA 57.647 50.000 0.00 0.00 0.00 3.67
337 383 4.412528 ACTTATCCCTCTAACCATCCAACC 59.587 45.833 0.00 0.00 0.00 3.77
338 384 5.368989 CACTTATCCCTCTAACCATCCAAC 58.631 45.833 0.00 0.00 0.00 3.77
339 385 4.412199 CCACTTATCCCTCTAACCATCCAA 59.588 45.833 0.00 0.00 0.00 3.53
340 386 3.973973 CCACTTATCCCTCTAACCATCCA 59.026 47.826 0.00 0.00 0.00 3.41
341 387 3.974642 ACCACTTATCCCTCTAACCATCC 59.025 47.826 0.00 0.00 0.00 3.51
342 388 6.936968 ATACCACTTATCCCTCTAACCATC 57.063 41.667 0.00 0.00 0.00 3.51
343 389 6.936968 GATACCACTTATCCCTCTAACCAT 57.063 41.667 0.00 0.00 31.62 3.55
362 408 2.757124 CCTGGTGGGCTGGGGATAC 61.757 68.421 0.00 0.00 0.00 2.24
363 409 2.368192 CCTGGTGGGCTGGGGATA 60.368 66.667 0.00 0.00 0.00 2.59
373 419 1.271379 CCAGTACTTGAACCCTGGTGG 60.271 57.143 0.00 0.00 39.70 4.61
374 420 2.185004 CCAGTACTTGAACCCTGGTG 57.815 55.000 0.00 0.00 39.70 4.17
377 423 1.072331 AGCACCAGTACTTGAACCCTG 59.928 52.381 0.08 0.00 0.00 4.45
378 424 1.348036 GAGCACCAGTACTTGAACCCT 59.652 52.381 0.08 0.00 0.00 4.34
379 425 1.809684 GAGCACCAGTACTTGAACCC 58.190 55.000 0.08 0.00 0.00 4.11
380 426 1.429463 CGAGCACCAGTACTTGAACC 58.571 55.000 0.08 0.00 0.00 3.62
381 427 0.790814 GCGAGCACCAGTACTTGAAC 59.209 55.000 0.08 0.00 0.00 3.18
382 428 0.391228 TGCGAGCACCAGTACTTGAA 59.609 50.000 0.08 0.00 0.00 2.69
383 429 0.608130 ATGCGAGCACCAGTACTTGA 59.392 50.000 0.00 0.00 0.00 3.02
384 430 1.442769 AATGCGAGCACCAGTACTTG 58.557 50.000 0.00 0.00 0.00 3.16
385 431 3.543680 ATAATGCGAGCACCAGTACTT 57.456 42.857 0.00 0.00 0.00 2.24
386 432 3.133003 AGAATAATGCGAGCACCAGTACT 59.867 43.478 0.00 0.00 0.00 2.73
387 433 3.458189 AGAATAATGCGAGCACCAGTAC 58.542 45.455 0.00 0.00 0.00 2.73
388 434 3.819564 AGAATAATGCGAGCACCAGTA 57.180 42.857 0.00 0.00 0.00 2.74
389 435 2.679837 CAAGAATAATGCGAGCACCAGT 59.320 45.455 0.00 0.00 0.00 4.00
390 436 2.938451 TCAAGAATAATGCGAGCACCAG 59.062 45.455 0.00 0.00 0.00 4.00
391 437 2.984562 TCAAGAATAATGCGAGCACCA 58.015 42.857 0.00 0.00 0.00 4.17
392 438 4.355543 TTTCAAGAATAATGCGAGCACC 57.644 40.909 0.00 0.00 0.00 5.01
393 439 4.795278 CCTTTTCAAGAATAATGCGAGCAC 59.205 41.667 0.00 0.00 0.00 4.40
394 440 4.458989 ACCTTTTCAAGAATAATGCGAGCA 59.541 37.500 0.00 0.00 0.00 4.26
395 441 4.795278 CACCTTTTCAAGAATAATGCGAGC 59.205 41.667 0.00 0.00 0.00 5.03
396 442 4.795278 GCACCTTTTCAAGAATAATGCGAG 59.205 41.667 0.00 0.00 0.00 5.03
397 443 4.458989 AGCACCTTTTCAAGAATAATGCGA 59.541 37.500 0.00 0.00 35.72 5.10
398 444 4.737054 AGCACCTTTTCAAGAATAATGCG 58.263 39.130 0.00 0.00 35.72 4.73
399 445 5.713025 TGAGCACCTTTTCAAGAATAATGC 58.287 37.500 0.00 0.00 0.00 3.56
400 446 8.133627 CCTATGAGCACCTTTTCAAGAATAATG 58.866 37.037 0.00 0.00 0.00 1.90
401 447 7.201857 GCCTATGAGCACCTTTTCAAGAATAAT 60.202 37.037 0.00 0.00 0.00 1.28
402 448 6.095440 GCCTATGAGCACCTTTTCAAGAATAA 59.905 38.462 0.00 0.00 0.00 1.40
403 449 5.590259 GCCTATGAGCACCTTTTCAAGAATA 59.410 40.000 0.00 0.00 0.00 1.75
404 450 4.400567 GCCTATGAGCACCTTTTCAAGAAT 59.599 41.667 0.00 0.00 0.00 2.40
405 451 3.758554 GCCTATGAGCACCTTTTCAAGAA 59.241 43.478 0.00 0.00 0.00 2.52
406 452 3.347216 GCCTATGAGCACCTTTTCAAGA 58.653 45.455 0.00 0.00 0.00 3.02
407 453 2.096496 CGCCTATGAGCACCTTTTCAAG 59.904 50.000 0.00 0.00 0.00 3.02
408 454 2.083774 CGCCTATGAGCACCTTTTCAA 58.916 47.619 0.00 0.00 0.00 2.69
409 455 1.003118 ACGCCTATGAGCACCTTTTCA 59.997 47.619 0.00 0.00 0.00 2.69
410 456 1.739067 ACGCCTATGAGCACCTTTTC 58.261 50.000 0.00 0.00 0.00 2.29
411 457 2.500098 TCTACGCCTATGAGCACCTTTT 59.500 45.455 0.00 0.00 0.00 2.27
412 458 2.101582 CTCTACGCCTATGAGCACCTTT 59.898 50.000 0.00 0.00 0.00 3.11
413 459 1.683917 CTCTACGCCTATGAGCACCTT 59.316 52.381 0.00 0.00 0.00 3.50
414 460 1.323412 CTCTACGCCTATGAGCACCT 58.677 55.000 0.00 0.00 0.00 4.00
415 461 1.033574 ACTCTACGCCTATGAGCACC 58.966 55.000 0.00 0.00 0.00 5.01
416 462 1.405821 ACACTCTACGCCTATGAGCAC 59.594 52.381 0.00 0.00 0.00 4.40
417 463 1.405463 CACACTCTACGCCTATGAGCA 59.595 52.381 0.00 0.00 0.00 4.26
418 464 1.405821 ACACACTCTACGCCTATGAGC 59.594 52.381 0.00 0.00 0.00 4.26
419 465 2.423892 ACACACACTCTACGCCTATGAG 59.576 50.000 0.00 0.00 0.00 2.90
420 466 2.163613 CACACACACTCTACGCCTATGA 59.836 50.000 0.00 0.00 0.00 2.15
421 467 2.530177 CACACACACTCTACGCCTATG 58.470 52.381 0.00 0.00 0.00 2.23
422 468 1.135083 GCACACACACTCTACGCCTAT 60.135 52.381 0.00 0.00 0.00 2.57
423 469 0.242825 GCACACACACTCTACGCCTA 59.757 55.000 0.00 0.00 0.00 3.93
424 470 1.006102 GCACACACACTCTACGCCT 60.006 57.895 0.00 0.00 0.00 5.52
425 471 2.372690 CGCACACACACTCTACGCC 61.373 63.158 0.00 0.00 0.00 5.68
426 472 1.660575 ACGCACACACACTCTACGC 60.661 57.895 0.00 0.00 0.00 4.42
427 473 1.876453 GCACGCACACACACTCTACG 61.876 60.000 0.00 0.00 0.00 3.51
428 474 0.874175 TGCACGCACACACACTCTAC 60.874 55.000 0.00 0.00 0.00 2.59
429 475 0.033366 ATGCACGCACACACACTCTA 59.967 50.000 0.00 0.00 0.00 2.43
430 476 0.815213 AATGCACGCACACACACTCT 60.815 50.000 0.00 0.00 0.00 3.24
431 477 0.384725 GAATGCACGCACACACACTC 60.385 55.000 0.00 0.00 0.00 3.51
432 478 1.094650 TGAATGCACGCACACACACT 61.095 50.000 0.00 0.00 0.00 3.55
433 479 0.040157 ATGAATGCACGCACACACAC 60.040 50.000 0.00 0.00 0.00 3.82
434 480 1.464219 CTATGAATGCACGCACACACA 59.536 47.619 0.00 0.00 0.00 3.72
435 481 1.202065 CCTATGAATGCACGCACACAC 60.202 52.381 0.00 0.00 0.00 3.82
436 482 1.085893 CCTATGAATGCACGCACACA 58.914 50.000 0.00 0.00 0.00 3.72
437 483 0.378257 CCCTATGAATGCACGCACAC 59.622 55.000 0.00 0.00 0.00 3.82
438 484 0.035534 ACCCTATGAATGCACGCACA 60.036 50.000 0.00 0.00 0.00 4.57
439 485 0.378257 CACCCTATGAATGCACGCAC 59.622 55.000 0.00 0.00 0.00 5.34
440 486 0.747644 CCACCCTATGAATGCACGCA 60.748 55.000 0.00 0.00 0.00 5.24
441 487 0.748005 ACCACCCTATGAATGCACGC 60.748 55.000 0.00 0.00 0.00 5.34
442 488 1.016627 CACCACCCTATGAATGCACG 58.983 55.000 0.00 0.00 0.00 5.34
443 489 2.292267 CTCACCACCCTATGAATGCAC 58.708 52.381 0.00 0.00 0.00 4.57
444 490 1.915489 ACTCACCACCCTATGAATGCA 59.085 47.619 0.00 0.00 0.00 3.96
445 491 2.292267 CACTCACCACCCTATGAATGC 58.708 52.381 0.00 0.00 0.00 3.56
446 492 3.634397 ACACTCACCACCCTATGAATG 57.366 47.619 0.00 0.00 0.00 2.67
447 493 4.444876 GCATACACTCACCACCCTATGAAT 60.445 45.833 0.00 0.00 0.00 2.57
448 494 3.118408 GCATACACTCACCACCCTATGAA 60.118 47.826 0.00 0.00 0.00 2.57
449 495 2.434336 GCATACACTCACCACCCTATGA 59.566 50.000 0.00 0.00 0.00 2.15
450 496 2.170397 TGCATACACTCACCACCCTATG 59.830 50.000 0.00 0.00 0.00 2.23
451 497 2.477245 TGCATACACTCACCACCCTAT 58.523 47.619 0.00 0.00 0.00 2.57
452 498 1.945580 TGCATACACTCACCACCCTA 58.054 50.000 0.00 0.00 0.00 3.53
453 499 1.289160 ATGCATACACTCACCACCCT 58.711 50.000 0.00 0.00 0.00 4.34
454 500 3.492102 ATATGCATACACTCACCACCC 57.508 47.619 8.99 0.00 0.00 4.61
455 501 5.551233 ACATATATGCATACACTCACCACC 58.449 41.667 8.99 0.00 0.00 4.61
456 502 8.034804 TCATACATATATGCATACACTCACCAC 58.965 37.037 8.99 0.00 38.50 4.16
457 503 8.133024 TCATACATATATGCATACACTCACCA 57.867 34.615 8.99 0.00 38.50 4.17
458 504 7.223582 GCTCATACATATATGCATACACTCACC 59.776 40.741 8.99 0.00 38.50 4.02
459 505 7.043788 CGCTCATACATATATGCATACACTCAC 60.044 40.741 8.99 0.00 38.50 3.51
460 506 6.974622 CGCTCATACATATATGCATACACTCA 59.025 38.462 8.99 0.00 38.50 3.41
461 507 6.074623 GCGCTCATACATATATGCATACACTC 60.075 42.308 8.99 0.00 38.50 3.51
462 508 5.750547 GCGCTCATACATATATGCATACACT 59.249 40.000 8.99 0.00 38.50 3.55
463 509 5.750547 AGCGCTCATACATATATGCATACAC 59.249 40.000 8.99 0.00 38.50 2.90
464 510 5.906073 AGCGCTCATACATATATGCATACA 58.094 37.500 8.99 0.00 38.50 2.29
465 511 6.643845 CAAGCGCTCATACATATATGCATAC 58.356 40.000 12.06 0.00 38.50 2.39
466 512 5.234972 GCAAGCGCTCATACATATATGCATA 59.765 40.000 12.06 9.27 38.50 3.14
467 513 4.034858 GCAAGCGCTCATACATATATGCAT 59.965 41.667 12.06 3.79 38.50 3.96
468 514 3.371898 GCAAGCGCTCATACATATATGCA 59.628 43.478 12.06 0.00 38.50 3.96
469 515 3.542875 CGCAAGCGCTCATACATATATGC 60.543 47.826 12.06 12.12 38.50 3.14
470 516 3.614176 ACGCAAGCGCTCATACATATATG 59.386 43.478 12.06 11.29 44.19 1.78
471 517 3.849911 ACGCAAGCGCTCATACATATAT 58.150 40.909 12.06 0.00 44.19 0.86
472 518 3.057526 AGACGCAAGCGCTCATACATATA 60.058 43.478 12.06 0.00 44.19 0.86
473 519 2.061773 GACGCAAGCGCTCATACATAT 58.938 47.619 12.06 0.00 44.19 1.78
474 520 1.067060 AGACGCAAGCGCTCATACATA 59.933 47.619 12.06 0.00 44.19 2.29
475 521 0.179100 AGACGCAAGCGCTCATACAT 60.179 50.000 12.06 0.00 44.19 2.29
476 522 1.078201 CAGACGCAAGCGCTCATACA 61.078 55.000 12.06 0.00 44.19 2.29
477 523 1.078759 ACAGACGCAAGCGCTCATAC 61.079 55.000 12.06 1.58 44.19 2.39
478 524 0.454196 TACAGACGCAAGCGCTCATA 59.546 50.000 12.06 5.16 44.19 2.15
479 525 1.078759 GTACAGACGCAAGCGCTCAT 61.079 55.000 12.06 0.00 44.19 2.90
480 526 1.733041 GTACAGACGCAAGCGCTCA 60.733 57.895 12.06 0.83 44.19 4.26
481 527 1.444553 AGTACAGACGCAAGCGCTC 60.445 57.895 12.06 11.06 44.19 5.03
482 528 1.734477 CAGTACAGACGCAAGCGCT 60.734 57.895 15.09 2.64 44.19 5.92
483 529 2.022129 ACAGTACAGACGCAAGCGC 61.022 57.895 15.09 0.00 44.19 5.92
484 530 0.939577 ACACAGTACAGACGCAAGCG 60.940 55.000 13.50 13.50 46.03 4.68
485 531 1.217882 AACACAGTACAGACGCAAGC 58.782 50.000 0.00 0.00 45.62 4.01
487 533 6.016213 TCTATTAACACAGTACAGACGCAA 57.984 37.500 0.00 0.00 0.00 4.85
488 534 5.632244 TCTATTAACACAGTACAGACGCA 57.368 39.130 0.00 0.00 0.00 5.24
489 535 6.364165 TGTTTCTATTAACACAGTACAGACGC 59.636 38.462 0.00 0.00 33.31 5.19
490 536 7.862741 TGTTTCTATTAACACAGTACAGACG 57.137 36.000 0.00 0.00 33.31 4.18
497 543 8.700973 ACCCAAATTTGTTTCTATTAACACAGT 58.299 29.630 16.73 0.00 37.72 3.55
498 544 9.541143 AACCCAAATTTGTTTCTATTAACACAG 57.459 29.630 16.73 0.00 37.72 3.66
499 545 9.892130 AAACCCAAATTTGTTTCTATTAACACA 57.108 25.926 16.73 0.00 37.72 3.72
507 553 8.354426 GCTACTGTAAACCCAAATTTGTTTCTA 58.646 33.333 16.73 1.10 36.23 2.10
508 554 7.207383 GCTACTGTAAACCCAAATTTGTTTCT 58.793 34.615 16.73 2.00 36.23 2.52
509 555 6.143278 CGCTACTGTAAACCCAAATTTGTTTC 59.857 38.462 16.73 4.02 36.23 2.78
510 556 5.980715 CGCTACTGTAAACCCAAATTTGTTT 59.019 36.000 16.73 13.24 38.22 2.83
511 557 5.299782 TCGCTACTGTAAACCCAAATTTGTT 59.700 36.000 16.73 7.48 0.00 2.83
512 558 4.822896 TCGCTACTGTAAACCCAAATTTGT 59.177 37.500 16.73 1.03 0.00 2.83
513 559 5.365403 TCGCTACTGTAAACCCAAATTTG 57.635 39.130 11.40 11.40 0.00 2.32
514 560 6.433093 AGATTCGCTACTGTAAACCCAAATTT 59.567 34.615 0.00 0.00 0.00 1.82
515 561 5.944007 AGATTCGCTACTGTAAACCCAAATT 59.056 36.000 0.00 0.00 0.00 1.82
516 562 5.497474 AGATTCGCTACTGTAAACCCAAAT 58.503 37.500 0.00 0.00 0.00 2.32
517 563 4.901868 AGATTCGCTACTGTAAACCCAAA 58.098 39.130 0.00 0.00 0.00 3.28
518 564 4.546829 AGATTCGCTACTGTAAACCCAA 57.453 40.909 0.00 0.00 0.00 4.12
519 565 5.221382 GGATAGATTCGCTACTGTAAACCCA 60.221 44.000 0.00 0.00 0.00 4.51
520 566 5.221382 TGGATAGATTCGCTACTGTAAACCC 60.221 44.000 0.00 0.00 0.00 4.11
521 567 5.690857 GTGGATAGATTCGCTACTGTAAACC 59.309 44.000 0.00 0.00 0.00 3.27
522 568 5.690857 GGTGGATAGATTCGCTACTGTAAAC 59.309 44.000 0.00 0.00 0.00 2.01
523 569 5.597182 AGGTGGATAGATTCGCTACTGTAAA 59.403 40.000 0.00 0.00 0.00 2.01
524 570 5.138276 AGGTGGATAGATTCGCTACTGTAA 58.862 41.667 0.00 0.00 0.00 2.41
525 571 4.726583 AGGTGGATAGATTCGCTACTGTA 58.273 43.478 0.00 0.00 0.00 2.74
526 572 3.567397 AGGTGGATAGATTCGCTACTGT 58.433 45.455 0.00 0.00 0.00 3.55
527 573 4.592485 AAGGTGGATAGATTCGCTACTG 57.408 45.455 0.00 0.00 0.00 2.74
538 584 5.992217 GCTGATTAGTTGGTAAGGTGGATAG 59.008 44.000 0.00 0.00 0.00 2.08
544 590 5.499004 TTCTGCTGATTAGTTGGTAAGGT 57.501 39.130 0.00 0.00 0.00 3.50
605 651 3.373439 GCATCATCTTTGTCAGTGGAGTC 59.627 47.826 0.00 0.00 0.00 3.36
629 687 1.067213 GGCCGAAAAGCTTATTGGCAA 60.067 47.619 27.12 0.68 44.21 4.52
716 774 4.301628 TCATGCTTATCATCGTACTGCTG 58.698 43.478 0.00 0.00 31.79 4.41
717 775 4.554292 CTCATGCTTATCATCGTACTGCT 58.446 43.478 0.00 0.00 31.79 4.24
718 776 3.677121 CCTCATGCTTATCATCGTACTGC 59.323 47.826 0.00 0.00 31.79 4.40
719 777 4.920340 GTCCTCATGCTTATCATCGTACTG 59.080 45.833 0.00 0.00 31.79 2.74
734 793 0.972983 ACCAGTCTCCGGTCCTCATG 60.973 60.000 0.00 0.00 27.30 3.07
744 803 0.395312 TTTCGGGTTGACCAGTCTCC 59.605 55.000 2.12 2.29 40.22 3.71
766 826 1.344065 TTGACCCAGCGAAACCTAGA 58.656 50.000 0.00 0.00 0.00 2.43
769 829 0.182775 AGTTTGACCCAGCGAAACCT 59.817 50.000 0.00 0.00 31.21 3.50
789 855 0.824109 TGATGCACTTCCGGTCCTAG 59.176 55.000 0.00 0.00 0.00 3.02
989 1064 1.871408 CGTCCTGCATGGCTAGCTAAG 60.871 57.143 15.72 6.84 35.26 2.18
990 1065 0.104855 CGTCCTGCATGGCTAGCTAA 59.895 55.000 15.72 3.70 35.26 3.09
1013 1098 2.285180 CCCCTCCTCCTCCTCCTG 59.715 72.222 0.00 0.00 0.00 3.86
1346 1440 9.158364 CGTCCTAAATTTGAAATCATAATCGTG 57.842 33.333 0.00 0.00 0.00 4.35
1420 1798 3.827302 CACCACCCTACTGGCTACTATAG 59.173 52.174 0.00 0.00 37.83 1.31
1439 1817 4.794169 ACAAATATGTGAGCGTTTTCACC 58.206 39.130 0.00 0.00 45.40 4.02
1482 1860 1.089112 TTGAAGCATCGGCATGTGAG 58.911 50.000 0.00 0.00 44.61 3.51
1523 1901 7.396540 AGGATCATATTTGAGACCAAAACAC 57.603 36.000 12.13 0.00 44.49 3.32
1545 1923 2.902705 TAAAATGGATCCGACGGAGG 57.097 50.000 22.99 0.00 34.05 4.30
1550 1928 5.205565 GCGAGAAATTAAAATGGATCCGAC 58.794 41.667 7.39 0.00 0.00 4.79
1561 1939 7.830940 TGTACTAAATCGGCGAGAAATTAAA 57.169 32.000 17.22 0.00 0.00 1.52
1568 1946 4.569162 CCATTTTGTACTAAATCGGCGAGA 59.431 41.667 17.22 1.94 0.00 4.04
1574 1952 6.838198 TCCGATCCATTTTGTACTAAATCG 57.162 37.500 11.62 12.50 0.00 3.34
1581 1959 4.273480 CACTCCATCCGATCCATTTTGTAC 59.727 45.833 0.00 0.00 0.00 2.90
1604 1984 3.996480 AGGATGCGAGAGTAATAAAGCC 58.004 45.455 0.00 0.00 0.00 4.35
1666 2048 6.745159 TTTTTAGCATGTTATTACTCCGCA 57.255 33.333 0.00 0.00 0.00 5.69
1686 2068 1.158434 CATGGCTTGCCGCAATTTTT 58.842 45.000 6.19 0.00 41.67 1.94
1704 2091 5.221303 ACACCGTGTTACTACTTCTTTAGCA 60.221 40.000 0.00 0.00 0.00 3.49
1705 2092 5.225642 ACACCGTGTTACTACTTCTTTAGC 58.774 41.667 0.00 0.00 0.00 3.09
1713 2104 5.242393 ACATGTCTAACACCGTGTTACTACT 59.758 40.000 18.26 8.34 41.45 2.57
1714 2105 5.464168 ACATGTCTAACACCGTGTTACTAC 58.536 41.667 18.26 17.91 41.45 2.73
1715 2106 5.710513 ACATGTCTAACACCGTGTTACTA 57.289 39.130 18.26 8.41 41.45 1.82
1739 2134 9.525826 GATGGAGAAGGATGGACAATATATTTT 57.474 33.333 0.00 0.00 0.00 1.82
1750 2145 3.453717 CTGAACTGATGGAGAAGGATGGA 59.546 47.826 0.00 0.00 0.00 3.41
1768 2163 5.466819 AGTCGATTCATACAAACGTCTGAA 58.533 37.500 0.00 0.00 34.96 3.02
1787 2182 6.476706 TGTGTTATTGAATCATGCTCTAGTCG 59.523 38.462 0.00 0.00 0.00 4.18
1792 2187 6.765036 CCTAGTGTGTTATTGAATCATGCTCT 59.235 38.462 0.00 0.00 0.00 4.09
1838 2233 1.980765 GATATCCCTGTCTGGATGGCA 59.019 52.381 2.85 0.00 44.87 4.92
1851 2251 3.655777 TGATACCCCCAAGTTGATATCCC 59.344 47.826 3.87 0.00 0.00 3.85
1852 2252 4.993705 TGATACCCCCAAGTTGATATCC 57.006 45.455 3.87 0.00 0.00 2.59
1853 2253 5.941788 AGTTGATACCCCCAAGTTGATATC 58.058 41.667 3.87 6.89 0.00 1.63
1854 2254 5.994416 AGTTGATACCCCCAAGTTGATAT 57.006 39.130 3.87 0.00 0.00 1.63
1855 2255 5.789574 AAGTTGATACCCCCAAGTTGATA 57.210 39.130 3.87 0.00 36.24 2.15
1856 2256 4.675063 AAGTTGATACCCCCAAGTTGAT 57.325 40.909 3.87 0.00 36.24 2.57
1859 2259 2.110011 AGCAAGTTGATACCCCCAAGTT 59.890 45.455 7.16 0.00 37.58 2.66
1860 2260 1.710809 AGCAAGTTGATACCCCCAAGT 59.289 47.619 7.16 0.00 0.00 3.16
1861 2261 2.094675 CAGCAAGTTGATACCCCCAAG 58.905 52.381 7.16 0.00 0.00 3.61
1862 2262 1.890573 GCAGCAAGTTGATACCCCCAA 60.891 52.381 7.16 0.00 0.00 4.12
1863 2263 0.323360 GCAGCAAGTTGATACCCCCA 60.323 55.000 7.16 0.00 0.00 4.96
1864 2264 1.037579 GGCAGCAAGTTGATACCCCC 61.038 60.000 7.16 0.00 0.00 5.40
2001 2405 9.597170 GATCGGAAAAGGTTAACTAACTCTATT 57.403 33.333 5.42 0.00 36.47 1.73
2021 2425 1.814793 TGATGCGGTTTTTGATCGGA 58.185 45.000 0.00 0.00 36.36 4.55
2022 2426 2.849880 ATGATGCGGTTTTTGATCGG 57.150 45.000 0.00 0.00 30.77 4.18
2024 2428 4.445385 GCCATAATGATGCGGTTTTTGATC 59.555 41.667 0.00 0.00 0.00 2.92
2025 2429 4.141981 TGCCATAATGATGCGGTTTTTGAT 60.142 37.500 0.00 0.00 0.00 2.57
2026 2430 3.194329 TGCCATAATGATGCGGTTTTTGA 59.806 39.130 0.00 0.00 0.00 2.69
2027 2431 3.519579 TGCCATAATGATGCGGTTTTTG 58.480 40.909 0.00 0.00 0.00 2.44
2028 2432 3.883830 TGCCATAATGATGCGGTTTTT 57.116 38.095 0.00 0.00 0.00 1.94
2063 2467 5.107824 GGAACCACGAGTACTCCTTTTATC 58.892 45.833 17.23 8.59 0.00 1.75
2070 2474 0.108756 GCTGGAACCACGAGTACTCC 60.109 60.000 17.23 2.72 0.00 3.85
2076 2480 1.813513 ATTCTTGCTGGAACCACGAG 58.186 50.000 0.00 0.00 0.00 4.18
2077 2481 2.270352 AATTCTTGCTGGAACCACGA 57.730 45.000 0.00 0.00 0.00 4.35
2078 2482 4.215399 TCTTTAATTCTTGCTGGAACCACG 59.785 41.667 0.00 0.00 0.00 4.94
2109 2513 7.573968 AAATGGCACTAACTTCCATTAGATC 57.426 36.000 6.20 0.00 46.55 2.75
2209 2629 5.923204 ACTTCCATAGGAGCAAGTGATAAG 58.077 41.667 0.00 0.00 31.21 1.73
2220 2640 6.183347 ACAGGAATGAAAACTTCCATAGGAG 58.817 40.000 5.00 0.00 43.88 3.69
2291 2750 9.618890 CCTTTCAGACAAAAATCTCCATATCTA 57.381 33.333 0.00 0.00 0.00 1.98
2478 2942 0.839277 TCATACCCAGGACCATGCAG 59.161 55.000 0.00 0.00 0.00 4.41
2530 2994 1.535437 GCGTCGTCGGGTATTCTGAAT 60.535 52.381 8.14 8.14 37.56 2.57
2578 3042 1.404315 CCGTACTTCCTCCAGCTGAAC 60.404 57.143 17.39 0.00 0.00 3.18
2623 3087 1.345415 TCGGTCACTAACCTTGGGAAC 59.655 52.381 0.00 0.00 46.87 3.62
2635 3099 7.562454 TTTTCTGTAAAGAAAATCGGTCACT 57.438 32.000 15.54 0.00 41.24 3.41
2662 3126 9.899661 TTACACACCAGCTAAATCTACAATATT 57.100 29.630 0.00 0.00 0.00 1.28
2664 3128 9.899661 AATTACACACCAGCTAAATCTACAATA 57.100 29.630 0.00 0.00 0.00 1.90
2665 3129 8.807948 AATTACACACCAGCTAAATCTACAAT 57.192 30.769 0.00 0.00 0.00 2.71
2666 3130 8.630054 AAATTACACACCAGCTAAATCTACAA 57.370 30.769 0.00 0.00 0.00 2.41
2667 3131 7.880713 TGAAATTACACACCAGCTAAATCTACA 59.119 33.333 0.00 0.00 0.00 2.74
2668 3132 8.263940 TGAAATTACACACCAGCTAAATCTAC 57.736 34.615 0.00 0.00 0.00 2.59
2699 3197 4.260985 TGAGCATCGGCAAAAATCTAGAA 58.739 39.130 0.00 0.00 44.61 2.10
2701 3199 4.274214 TCATGAGCATCGGCAAAAATCTAG 59.726 41.667 0.00 0.00 44.61 2.43
2702 3200 4.198530 TCATGAGCATCGGCAAAAATCTA 58.801 39.130 0.00 0.00 44.61 1.98
2704 3202 3.425577 TCATGAGCATCGGCAAAAATC 57.574 42.857 0.00 0.00 44.61 2.17
2708 3206 1.199789 GTGTTCATGAGCATCGGCAAA 59.800 47.619 15.71 0.00 44.61 3.68
2712 3210 4.122046 TCTAATGTGTTCATGAGCATCGG 58.878 43.478 15.71 5.34 38.61 4.18
2713 3211 5.919272 ATCTAATGTGTTCATGAGCATCG 57.081 39.130 15.71 7.43 38.61 3.84
2716 3214 6.877236 TGTCTATCTAATGTGTTCATGAGCA 58.123 36.000 8.32 8.32 33.61 4.26
2717 3215 7.776933 TTGTCTATCTAATGTGTTCATGAGC 57.223 36.000 2.05 2.05 33.61 4.26
2720 3218 9.229784 GCAATTTGTCTATCTAATGTGTTCATG 57.770 33.333 0.00 0.00 34.19 3.07
2721 3219 8.959548 TGCAATTTGTCTATCTAATGTGTTCAT 58.040 29.630 0.00 0.00 35.59 2.57
2723 3221 9.229784 CATGCAATTTGTCTATCTAATGTGTTC 57.770 33.333 0.00 0.00 0.00 3.18
2725 3223 7.148035 TGCATGCAATTTGTCTATCTAATGTGT 60.148 33.333 20.30 0.00 0.00 3.72
2726 3224 7.197703 TGCATGCAATTTGTCTATCTAATGTG 58.802 34.615 20.30 0.00 0.00 3.21
2727 3225 7.337480 TGCATGCAATTTGTCTATCTAATGT 57.663 32.000 20.30 0.00 0.00 2.71
2728 3226 8.637281 TTTGCATGCAATTTGTCTATCTAATG 57.363 30.769 32.27 0.00 35.70 1.90
2729 3227 9.656040 TTTTTGCATGCAATTTGTCTATCTAAT 57.344 25.926 32.27 0.00 35.70 1.73
2802 3546 5.350091 GCTGGTCAATACTGTCTCTTCTTTC 59.650 44.000 0.00 0.00 0.00 2.62
2804 3548 4.530161 AGCTGGTCAATACTGTCTCTTCTT 59.470 41.667 0.00 0.00 0.00 2.52
2810 3554 3.055530 CCAGAAGCTGGTCAATACTGTCT 60.056 47.826 5.31 0.00 45.82 3.41
2811 3555 3.265791 CCAGAAGCTGGTCAATACTGTC 58.734 50.000 5.31 0.00 45.82 3.51
2831 3643 0.947244 CTCAGTCAGTGCCACAAACC 59.053 55.000 0.00 0.00 0.00 3.27
2839 3651 0.169230 ATCGTCGTCTCAGTCAGTGC 59.831 55.000 0.00 0.00 0.00 4.40
2886 3698 0.525761 GGTACGTGCACCGGTAGTAA 59.474 55.000 6.87 0.00 42.24 2.24
3170 3982 4.738998 TGCCGTGGCCATGGAAGG 62.739 66.667 42.54 24.69 39.90 3.46
3429 4241 2.278013 GAGTAGTCGAAGCCGGCG 60.278 66.667 23.20 7.22 46.52 6.46
3455 4267 4.394712 GCTGCAGGCCGTGGTACT 62.395 66.667 17.12 0.00 34.27 2.73
3456 4268 4.697756 TGCTGCAGGCCGTGGTAC 62.698 66.667 17.12 0.00 40.92 3.34
3457 4269 4.393155 CTGCTGCAGGCCGTGGTA 62.393 66.667 21.71 0.00 40.92 3.25
3471 4283 3.479269 GCGTACTGGTCGTGCTGC 61.479 66.667 0.00 0.00 0.00 5.25
3497 4309 2.046700 GGTCGAACGGGAATGGCA 60.047 61.111 0.00 0.00 0.00 4.92
3499 4311 2.124860 GGGGTCGAACGGGAATGG 60.125 66.667 0.00 0.00 0.00 3.16
3500 4312 2.124860 GGGGGTCGAACGGGAATG 60.125 66.667 0.00 0.00 0.00 2.67
3556 4389 2.473816 TGCTTCAGTTCGTTCACAGAG 58.526 47.619 0.00 0.00 0.00 3.35
3557 4390 2.595124 TGCTTCAGTTCGTTCACAGA 57.405 45.000 0.00 0.00 0.00 3.41
3558 4391 2.802247 TCATGCTTCAGTTCGTTCACAG 59.198 45.455 0.00 0.00 0.00 3.66
3559 4392 2.832563 TCATGCTTCAGTTCGTTCACA 58.167 42.857 0.00 0.00 0.00 3.58
3561 4394 6.741992 AATAATCATGCTTCAGTTCGTTCA 57.258 33.333 0.00 0.00 0.00 3.18
3563 4396 8.437360 TCATAATAATCATGCTTCAGTTCGTT 57.563 30.769 0.00 0.00 0.00 3.85
3564 4397 8.338259 GTTCATAATAATCATGCTTCAGTTCGT 58.662 33.333 0.00 0.00 0.00 3.85
3565 4398 8.554528 AGTTCATAATAATCATGCTTCAGTTCG 58.445 33.333 0.00 0.00 0.00 3.95
3566 4399 9.661187 CAGTTCATAATAATCATGCTTCAGTTC 57.339 33.333 0.00 0.00 0.00 3.01
3567 4400 9.182214 ACAGTTCATAATAATCATGCTTCAGTT 57.818 29.630 0.00 0.00 0.00 3.16
3594 4427 9.561069 AGGCTGAATAATTCGACTGTTTTATAT 57.439 29.630 0.00 0.00 0.00 0.86
3597 4430 6.035650 CGAGGCTGAATAATTCGACTGTTTTA 59.964 38.462 0.00 0.00 33.38 1.52
3599 4432 4.330074 CGAGGCTGAATAATTCGACTGTTT 59.670 41.667 0.00 0.00 33.38 2.83
3608 4441 6.102897 AGTACATAGCGAGGCTGAATAATT 57.897 37.500 0.00 0.00 40.10 1.40
3618 4451 9.809096 ATGATGAATTAATAGTACATAGCGAGG 57.191 33.333 0.00 0.00 0.00 4.63
3638 4480 6.823182 ACGTAAATTTCTGATGGTGATGATGA 59.177 34.615 0.00 0.00 0.00 2.92
3649 4491 4.192317 GAGGCTGGACGTAAATTTCTGAT 58.808 43.478 0.00 0.00 0.00 2.90
3657 4499 3.627395 AATGATGAGGCTGGACGTAAA 57.373 42.857 0.00 0.00 0.00 2.01
3659 4501 2.766263 AGAAATGATGAGGCTGGACGTA 59.234 45.455 0.00 0.00 0.00 3.57
3660 4502 1.556911 AGAAATGATGAGGCTGGACGT 59.443 47.619 0.00 0.00 0.00 4.34
3662 4504 5.028549 TCTAAGAAATGATGAGGCTGGAC 57.971 43.478 0.00 0.00 0.00 4.02
3673 4640 5.178061 ACACGCACATCATCTAAGAAATGA 58.822 37.500 0.00 0.00 37.53 2.57
3696 4663 7.737972 AATGGCGTTTAAGTATGCATACATA 57.262 32.000 32.69 24.53 37.74 2.29
3697 4664 6.633500 AATGGCGTTTAAGTATGCATACAT 57.367 33.333 32.69 25.51 40.49 2.29
3703 4672 5.229921 TGAGAAATGGCGTTTAAGTATGC 57.770 39.130 4.35 0.00 0.00 3.14
3704 4673 7.226720 ACCTATGAGAAATGGCGTTTAAGTATG 59.773 37.037 4.35 0.00 0.00 2.39
3705 4674 7.280356 ACCTATGAGAAATGGCGTTTAAGTAT 58.720 34.615 4.35 1.11 0.00 2.12
3711 4680 5.099042 ACTACCTATGAGAAATGGCGTTT 57.901 39.130 3.95 3.95 0.00 3.60
3726 4695 8.334734 GGGAATACCTGATAGTGATACTACCTA 58.665 40.741 0.00 0.00 32.60 3.08
3732 4701 7.155328 CACTTGGGAATACCTGATAGTGATAC 58.845 42.308 0.00 0.00 41.11 2.24
3733 4702 6.239600 GCACTTGGGAATACCTGATAGTGATA 60.240 42.308 9.62 0.00 41.11 2.15
3735 4704 4.141711 GCACTTGGGAATACCTGATAGTGA 60.142 45.833 9.62 0.00 41.11 3.41
3738 4707 4.422073 TGCACTTGGGAATACCTGATAG 57.578 45.455 0.00 0.00 41.11 2.08
3739 4708 4.717877 CATGCACTTGGGAATACCTGATA 58.282 43.478 0.00 0.00 41.11 2.15
3741 4710 2.945440 GCATGCACTTGGGAATACCTGA 60.945 50.000 14.21 0.00 41.11 3.86
3742 4711 1.406539 GCATGCACTTGGGAATACCTG 59.593 52.381 14.21 0.00 41.11 4.00
3743 4712 1.285962 AGCATGCACTTGGGAATACCT 59.714 47.619 21.98 0.00 41.11 3.08
3744 4713 1.406539 CAGCATGCACTTGGGAATACC 59.593 52.381 21.98 0.00 40.81 2.73
3745 4714 2.098117 GTCAGCATGCACTTGGGAATAC 59.902 50.000 21.98 0.00 34.76 1.89
3784 4755 0.716108 GTTTCGACGATCCTGCTGTG 59.284 55.000 0.00 0.00 0.00 3.66
3789 4760 5.718649 ATGTTTATGTTTCGACGATCCTG 57.281 39.130 0.00 0.00 0.00 3.86
3791 4762 7.792508 GTGATTATGTTTATGTTTCGACGATCC 59.207 37.037 0.00 0.00 0.00 3.36
3792 4763 8.325282 TGTGATTATGTTTATGTTTCGACGATC 58.675 33.333 0.00 0.00 0.00 3.69
3793 4764 8.192068 TGTGATTATGTTTATGTTTCGACGAT 57.808 30.769 0.00 0.00 0.00 3.73
3794 4765 7.583860 TGTGATTATGTTTATGTTTCGACGA 57.416 32.000 0.00 0.00 0.00 4.20
3796 5325 8.942669 TGTTGTGATTATGTTTATGTTTCGAC 57.057 30.769 0.00 0.00 0.00 4.20
3833 5362 7.102993 GGTCCCATTTGTGCTTATGTTTATTT 58.897 34.615 0.00 0.00 0.00 1.40
3834 5363 6.212388 TGGTCCCATTTGTGCTTATGTTTATT 59.788 34.615 0.00 0.00 0.00 1.40
3835 5364 5.719085 TGGTCCCATTTGTGCTTATGTTTAT 59.281 36.000 0.00 0.00 0.00 1.40
3836 5365 5.080337 TGGTCCCATTTGTGCTTATGTTTA 58.920 37.500 0.00 0.00 0.00 2.01
3837 5366 3.900601 TGGTCCCATTTGTGCTTATGTTT 59.099 39.130 0.00 0.00 0.00 2.83
3838 5367 3.505386 TGGTCCCATTTGTGCTTATGTT 58.495 40.909 0.00 0.00 0.00 2.71
3839 5368 3.091545 CTGGTCCCATTTGTGCTTATGT 58.908 45.455 0.00 0.00 0.00 2.29
3840 5369 2.159198 GCTGGTCCCATTTGTGCTTATG 60.159 50.000 0.00 0.00 0.00 1.90
3843 5372 0.469705 TGCTGGTCCCATTTGTGCTT 60.470 50.000 0.00 0.00 0.00 3.91
3844 5373 0.251922 ATGCTGGTCCCATTTGTGCT 60.252 50.000 0.00 0.00 0.00 4.40
3845 5374 0.609662 AATGCTGGTCCCATTTGTGC 59.390 50.000 0.00 0.00 28.99 4.57
3849 5378 2.607499 TGTCAAATGCTGGTCCCATTT 58.393 42.857 1.40 1.40 42.02 2.32
3851 5380 1.895131 GTTGTCAAATGCTGGTCCCAT 59.105 47.619 0.00 0.00 0.00 4.00
3852 5381 1.327303 GTTGTCAAATGCTGGTCCCA 58.673 50.000 0.00 0.00 0.00 4.37
3853 5382 1.327303 TGTTGTCAAATGCTGGTCCC 58.673 50.000 0.00 0.00 0.00 4.46
3856 5385 2.443887 GCATGTTGTCAAATGCTGGT 57.556 45.000 17.96 0.00 44.64 4.00
3861 5390 4.624024 GGTTCTCATGCATGTTGTCAAATG 59.376 41.667 25.43 0.00 0.00 2.32
3863 5392 3.890756 AGGTTCTCATGCATGTTGTCAAA 59.109 39.130 25.43 9.62 0.00 2.69
3864 5393 3.489355 AGGTTCTCATGCATGTTGTCAA 58.511 40.909 25.43 9.86 0.00 3.18
3866 5395 3.076621 TGAGGTTCTCATGCATGTTGTC 58.923 45.455 25.43 14.58 35.39 3.18
3867 5396 3.079578 CTGAGGTTCTCATGCATGTTGT 58.920 45.455 25.43 6.52 39.92 3.32
3868 5397 3.340928 TCTGAGGTTCTCATGCATGTTG 58.659 45.455 25.43 18.71 39.92 3.33
3873 6960 2.836372 ACTCATCTGAGGTTCTCATGCA 59.164 45.455 11.66 0.00 46.13 3.96
3876 6963 6.611613 TTGTTACTCATCTGAGGTTCTCAT 57.388 37.500 11.66 0.00 46.13 2.90
3878 6965 6.931840 ACTTTTGTTACTCATCTGAGGTTCTC 59.068 38.462 11.66 0.00 46.13 2.87
3880 6969 6.566753 GCACTTTTGTTACTCATCTGAGGTTC 60.567 42.308 11.66 2.47 46.13 3.62
3934 7024 9.399403 GTTTTGAGATGTTTGGAAGAGTAATTC 57.601 33.333 0.00 0.00 0.00 2.17
3940 7030 5.673337 TCGTTTTGAGATGTTTGGAAGAG 57.327 39.130 0.00 0.00 0.00 2.85
4001 7091 5.502153 AAGTCTCGTTAGCTGTATGTAGG 57.498 43.478 0.00 0.00 0.00 3.18
4095 7185 0.316196 GGCGGCGAATGATTTCTTCG 60.316 55.000 12.98 1.34 46.22 3.79
4113 7203 0.322008 GGCAAGTCTTCTGGTCCTGG 60.322 60.000 0.00 0.00 0.00 4.45
4139 7233 1.632046 GCTTGGAAAATCCGTCGCGA 61.632 55.000 3.71 3.71 40.17 5.87
4140 7234 1.226018 GCTTGGAAAATCCGTCGCG 60.226 57.895 0.00 0.00 40.17 5.87
4155 7249 2.620108 GGATTGCAGGAAAGAGGAGCTT 60.620 50.000 0.00 0.00 38.88 3.74
4163 7257 2.205022 TGGTCTGGATTGCAGGAAAG 57.795 50.000 5.27 0.00 0.00 2.62
4193 7293 6.659242 CCTTTTAGTATCTCACACATTGGGTT 59.341 38.462 0.00 0.00 0.00 4.11
4195 7295 5.590259 CCCTTTTAGTATCTCACACATTGGG 59.410 44.000 0.00 0.00 0.00 4.12
4360 7617 3.443045 GGTGTGATTGCCTGCGGG 61.443 66.667 7.41 7.41 0.00 6.13
4376 7633 3.837213 TCCTGTTAGTCGTCGTAAAGG 57.163 47.619 0.00 0.00 0.00 3.11
4415 7672 2.270923 CGATTCGTTTGCTGATCCAGA 58.729 47.619 0.00 0.00 32.44 3.86
4418 7675 0.657840 CCCGATTCGTTTGCTGATCC 59.342 55.000 5.20 0.00 0.00 3.36
4421 7678 2.006888 GATTCCCGATTCGTTTGCTGA 58.993 47.619 5.20 0.00 0.00 4.26
4432 7689 2.840651 ACCTCAGAAAGTGATTCCCGAT 59.159 45.455 0.00 0.00 38.94 4.18
4498 7755 2.492088 GGGGATTGTTCTTTCCTTTCCG 59.508 50.000 0.00 0.00 32.34 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.