Multiple sequence alignment - TraesCS7A01G115300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G115300 chr7A 100.000 4310 0 0 1 4310 71147105 71142796 0.000000e+00 7960.0
1 TraesCS7A01G115300 chr7A 92.537 268 15 3 3985 4252 561887983 561888245 3.150000e-101 379.0
2 TraesCS7A01G115300 chr7D 89.862 2022 87 59 544 2515 68789742 68791695 0.000000e+00 2490.0
3 TraesCS7A01G115300 chr7D 88.025 1453 84 40 2566 3978 68791704 68793106 0.000000e+00 1637.0
4 TraesCS7A01G115300 chr7B 87.511 2226 153 72 63 2248 9749480 9751620 0.000000e+00 2455.0
5 TraesCS7A01G115300 chr7B 84.453 1280 72 48 2362 3563 9752096 9753326 0.000000e+00 1144.0
6 TraesCS7A01G115300 chr7B 84.211 266 20 9 3714 3978 9753454 9753698 5.570000e-59 239.0
7 TraesCS7A01G115300 chr7B 78.477 302 51 12 1176 1470 7357978 7357684 7.360000e-43 185.0
8 TraesCS7A01G115300 chrUn 83.488 430 68 2 1733 2159 218155108 218155537 8.680000e-107 398.0
9 TraesCS7A01G115300 chrUn 83.488 430 68 2 1733 2159 246423261 246422832 8.680000e-107 398.0
10 TraesCS7A01G115300 chrUn 90.395 177 17 0 1090 1266 218154632 218154808 2.590000e-57 233.0
11 TraesCS7A01G115300 chrUn 90.395 177 17 0 1090 1266 246423737 246423561 2.590000e-57 233.0
12 TraesCS7A01G115300 chrUn 85.463 227 27 6 3085 3307 218156113 218156337 9.320000e-57 231.0
13 TraesCS7A01G115300 chrUn 85.973 221 25 6 3091 3307 246422250 246422032 9.320000e-57 231.0
14 TraesCS7A01G115300 chrUn 83.598 189 31 0 1283 1471 218154908 218155096 1.230000e-40 178.0
15 TraesCS7A01G115300 chrUn 87.179 156 20 0 1316 1471 246423428 246423273 1.230000e-40 178.0
16 TraesCS7A01G115300 chr2A 92.364 275 15 2 3985 4259 103588383 103588115 1.880000e-103 387.0
17 TraesCS7A01G115300 chr2A 92.251 271 15 2 3984 4254 528661959 528661695 3.150000e-101 379.0
18 TraesCS7A01G115300 chr2A 73.307 251 55 9 215 459 644249096 644249340 9.930000e-12 82.4
19 TraesCS7A01G115300 chr2A 77.778 108 21 3 334 439 291883691 291883797 3.600000e-06 63.9
20 TraesCS7A01G115300 chr4A 92.910 268 13 2 3984 4251 104373315 104373054 6.760000e-103 385.0
21 TraesCS7A01G115300 chr3B 92.910 268 13 2 3985 4252 811005366 811005627 6.760000e-103 385.0
22 TraesCS7A01G115300 chr5D 92.251 271 15 3 3984 4254 209854667 209854931 3.150000e-101 379.0
23 TraesCS7A01G115300 chr6A 92.509 267 14 2 3985 4251 115182558 115182298 1.130000e-100 377.0
24 TraesCS7A01G115300 chr1A 92.537 268 12 4 3984 4251 454738800 454739059 1.130000e-100 377.0
25 TraesCS7A01G115300 chr1A 83.758 314 48 2 1849 2159 552951387 552951074 1.170000e-75 294.0
26 TraesCS7A01G115300 chr1A 85.973 221 25 6 3091 3307 552950547 552950329 9.320000e-57 231.0
27 TraesCS7A01G115300 chr1A 89.831 177 18 0 1090 1266 552952109 552951933 1.210000e-55 228.0
28 TraesCS7A01G115300 chr1A 85.946 185 26 0 1286 1470 552951822 552951638 9.450000e-47 198.0
29 TraesCS7A01G115300 chr1A 77.447 235 40 13 1036 1264 511500019 511500246 1.260000e-25 128.0
30 TraesCS7A01G115300 chr1A 84.404 109 17 0 1733 1841 552951631 552951523 1.640000e-19 108.0
31 TraesCS7A01G115300 chr3A 91.882 271 16 2 3984 4254 564425092 564424828 1.460000e-99 374.0
32 TraesCS7A01G115300 chr3A 83.951 81 9 2 383 463 71579525 71579601 1.660000e-09 75.0
33 TraesCS7A01G115300 chr1B 84.783 322 46 2 1849 2167 634413319 634412998 1.930000e-83 320.0
34 TraesCS7A01G115300 chr1B 84.783 322 46 2 1849 2167 634601564 634601885 1.930000e-83 320.0
35 TraesCS7A01G115300 chr1B 87.281 228 22 7 3085 3307 634412497 634412272 1.990000e-63 254.0
36 TraesCS7A01G115300 chr1B 86.404 228 24 7 3085 3308 634602360 634602584 4.310000e-60 243.0
37 TraesCS7A01G115300 chr1B 89.266 177 19 0 1090 1266 634418777 634418601 5.610000e-54 222.0
38 TraesCS7A01G115300 chr1B 88.701 177 20 0 1090 1266 634600838 634601014 2.610000e-52 217.0
39 TraesCS7A01G115300 chr1B 84.574 188 29 0 1283 1470 634601108 634601295 2.050000e-43 187.0
40 TraesCS7A01G115300 chr1B 75.735 272 39 13 743 1012 658481406 658481652 1.270000e-20 111.0
41 TraesCS7A01G115300 chr1B 84.404 109 17 0 1733 1841 634413581 634413473 1.640000e-19 108.0
42 TraesCS7A01G115300 chr1B 85.859 99 14 0 1743 1841 634601312 634601410 5.890000e-19 106.0
43 TraesCS7A01G115300 chr1D 84.424 321 47 2 1849 2166 461486518 461486198 3.240000e-81 313.0
44 TraesCS7A01G115300 chr1D 83.217 286 48 0 1733 2018 461533522 461533237 3.310000e-66 263.0
45 TraesCS7A01G115300 chr1D 85.294 238 28 7 3076 3308 461506407 461506172 5.570000e-59 239.0
46 TraesCS7A01G115300 chr1D 86.036 222 25 6 3091 3308 461485719 461485500 2.590000e-57 233.0
47 TraesCS7A01G115300 chr1D 89.266 177 19 0 1090 1266 461487274 461487098 5.610000e-54 222.0
48 TraesCS7A01G115300 chr1D 87.037 162 21 0 1286 1447 461486965 461486804 2.650000e-42 183.0
49 TraesCS7A01G115300 chr1D 83.158 190 30 2 1286 1474 461533719 461533531 5.730000e-39 172.0
50 TraesCS7A01G115300 chr1D 78.112 233 40 11 1036 1263 414775630 414775856 2.090000e-28 137.0
51 TraesCS7A01G115300 chr1D 84.545 110 15 2 1733 1841 461486774 461486666 1.640000e-19 108.0
52 TraesCS7A01G115300 chr5B 84.507 71 9 2 190 259 275004534 275004465 7.730000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G115300 chr7A 71142796 71147105 4309 True 7960.000000 7960 100.000000 1 4310 1 chr7A.!!$R1 4309
1 TraesCS7A01G115300 chr7D 68789742 68793106 3364 False 2063.500000 2490 88.943500 544 3978 2 chr7D.!!$F1 3434
2 TraesCS7A01G115300 chr7B 9749480 9753698 4218 False 1279.333333 2455 85.391667 63 3978 3 chr7B.!!$F1 3915
3 TraesCS7A01G115300 chrUn 218154632 218156337 1705 False 260.000000 398 85.736000 1090 3307 4 chrUn.!!$F1 2217
4 TraesCS7A01G115300 chrUn 246422032 246423737 1705 True 260.000000 398 86.758750 1090 3307 4 chrUn.!!$R1 2217
5 TraesCS7A01G115300 chr1A 552950329 552952109 1780 True 211.800000 294 85.982400 1090 3307 5 chr1A.!!$R1 2217
6 TraesCS7A01G115300 chr1B 634412272 634413581 1309 True 227.333333 320 85.489333 1733 3307 3 chr1B.!!$R2 1574
7 TraesCS7A01G115300 chr1B 634600838 634602584 1746 False 214.600000 320 86.064200 1090 3308 5 chr1B.!!$F2 2218
8 TraesCS7A01G115300 chr1D 461485500 461487274 1774 True 211.800000 313 86.261600 1090 3308 5 chr1D.!!$R2 2218

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
733 752 0.106268 TCCCCTTCAACTTGCTGCAA 60.106 50.0 15.16 15.16 0.00 4.08 F
2355 3047 0.109226 GGACAGGACAGAGCGTGTAC 60.109 60.0 0.00 0.00 40.56 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2388 3103 0.039256 CATTTAATCCCGGCGCCATG 60.039 55.0 28.98 16.97 0.0 3.66 R
4257 5313 0.109723 TAAGCCTTTTCACCGTGCCT 59.890 50.0 0.00 0.00 0.0 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 6.918892 TCATTTGGGTAAAGATACGATGTG 57.081 37.500 0.00 0.00 32.51 3.21
27 28 6.411376 TCATTTGGGTAAAGATACGATGTGT 58.589 36.000 0.00 0.00 32.51 3.72
28 29 6.315144 TCATTTGGGTAAAGATACGATGTGTG 59.685 38.462 0.00 0.00 32.51 3.82
29 30 3.527533 TGGGTAAAGATACGATGTGTGC 58.472 45.455 0.00 0.00 32.51 4.57
30 31 2.870411 GGGTAAAGATACGATGTGTGCC 59.130 50.000 0.00 0.00 32.51 5.01
31 32 3.431766 GGGTAAAGATACGATGTGTGCCT 60.432 47.826 0.00 0.00 32.51 4.75
32 33 3.555956 GGTAAAGATACGATGTGTGCCTG 59.444 47.826 0.00 0.00 32.51 4.85
33 34 1.656652 AAGATACGATGTGTGCCTGC 58.343 50.000 0.00 0.00 0.00 4.85
34 35 0.179073 AGATACGATGTGTGCCTGCC 60.179 55.000 0.00 0.00 0.00 4.85
35 36 1.490693 GATACGATGTGTGCCTGCCG 61.491 60.000 0.00 0.00 0.00 5.69
46 47 4.776322 CCTGCCGCCGTCATTGGA 62.776 66.667 0.00 0.00 0.00 3.53
47 48 2.745884 CTGCCGCCGTCATTGGAA 60.746 61.111 0.00 0.00 0.00 3.53
48 49 2.281831 TGCCGCCGTCATTGGAAA 60.282 55.556 0.00 0.00 0.00 3.13
49 50 2.178273 GCCGCCGTCATTGGAAAC 59.822 61.111 0.00 0.00 0.00 2.78
50 51 2.622011 GCCGCCGTCATTGGAAACA 61.622 57.895 0.00 0.00 39.83 2.83
51 52 1.209127 CCGCCGTCATTGGAAACAC 59.791 57.895 0.00 0.00 42.67 3.32
52 53 1.209127 CGCCGTCATTGGAAACACC 59.791 57.895 0.00 0.00 42.67 4.16
61 62 3.043998 TGGAAACACCAAATCGGGG 57.956 52.632 0.00 0.00 46.75 5.73
69 70 4.770874 CAAATCGGGGGCGTCGGT 62.771 66.667 0.00 0.00 0.00 4.69
73 74 3.804638 ATCGGGGGCGTCGGTCTAT 62.805 63.158 0.00 0.00 0.00 1.98
75 76 3.974757 GGGGGCGTCGGTCTATCG 61.975 72.222 0.00 0.00 0.00 2.92
85 86 0.235144 CGGTCTATCGCGGTCTGTAG 59.765 60.000 6.13 0.00 0.00 2.74
89 90 1.746787 TCTATCGCGGTCTGTAGCAAA 59.253 47.619 6.13 0.00 0.00 3.68
90 91 2.120232 CTATCGCGGTCTGTAGCAAAG 58.880 52.381 6.13 0.00 0.00 2.77
92 93 0.109272 TCGCGGTCTGTAGCAAAGAG 60.109 55.000 6.13 0.00 0.00 2.85
107 108 3.339141 CAAAGAGCTCCTGTACCTTTCC 58.661 50.000 10.93 0.00 0.00 3.13
118 119 7.107639 TCCTGTACCTTTCCAAAAAGAAAAG 57.892 36.000 0.00 0.00 43.90 2.27
122 128 9.430623 CTGTACCTTTCCAAAAAGAAAAGAAAA 57.569 29.630 0.00 0.00 43.90 2.29
196 202 8.658499 TCCTATCGTTCTAATTAGAAAAAGGC 57.342 34.615 25.73 14.04 43.30 4.35
197 203 7.437267 TCCTATCGTTCTAATTAGAAAAAGGCG 59.563 37.037 25.73 22.84 43.30 5.52
204 211 6.905578 TCTAATTAGAAAAAGGCGAACCAAC 58.094 36.000 12.87 0.00 39.06 3.77
205 212 3.612472 TTAGAAAAAGGCGAACCAACG 57.388 42.857 0.00 0.00 39.06 4.10
206 213 1.385528 AGAAAAAGGCGAACCAACGT 58.614 45.000 0.00 0.00 39.06 3.99
207 214 2.563702 AGAAAAAGGCGAACCAACGTA 58.436 42.857 0.00 0.00 39.06 3.57
210 217 2.172851 AAAGGCGAACCAACGTATGA 57.827 45.000 0.00 0.00 39.06 2.15
226 233 5.611374 ACGTATGATTGGATGGTTAGAAGG 58.389 41.667 0.00 0.00 0.00 3.46
229 236 5.715439 ATGATTGGATGGTTAGAAGGACA 57.285 39.130 0.00 0.00 0.00 4.02
230 237 5.512942 TGATTGGATGGTTAGAAGGACAA 57.487 39.130 0.00 0.00 0.00 3.18
233 240 5.512942 TTGGATGGTTAGAAGGACAATGA 57.487 39.130 0.00 0.00 0.00 2.57
236 243 6.591935 TGGATGGTTAGAAGGACAATGATAC 58.408 40.000 0.00 0.00 0.00 2.24
237 244 5.998363 GGATGGTTAGAAGGACAATGATACC 59.002 44.000 0.00 0.00 0.00 2.73
239 246 5.036916 TGGTTAGAAGGACAATGATACCCT 58.963 41.667 0.00 0.00 0.00 4.34
244 251 3.567478 AGGACAATGATACCCTCAAGC 57.433 47.619 0.00 0.00 37.44 4.01
247 254 2.945668 GACAATGATACCCTCAAGCCAC 59.054 50.000 0.00 0.00 37.44 5.01
284 291 4.543590 AGACTTGACTTGACATAGGTGG 57.456 45.455 0.00 0.00 0.00 4.61
286 293 4.348168 AGACTTGACTTGACATAGGTGGTT 59.652 41.667 0.00 0.00 0.00 3.67
297 304 5.948758 TGACATAGGTGGTTGCATTTTCATA 59.051 36.000 0.00 0.00 0.00 2.15
326 333 3.326747 TCTAGGCTTTTGAGCTTCGTTC 58.673 45.455 0.00 0.00 34.73 3.95
327 334 1.967319 AGGCTTTTGAGCTTCGTTCA 58.033 45.000 0.00 0.00 34.73 3.18
328 335 2.297701 AGGCTTTTGAGCTTCGTTCAA 58.702 42.857 0.00 0.00 31.38 2.69
330 337 4.072131 AGGCTTTTGAGCTTCGTTCAATA 58.928 39.130 0.00 0.00 33.23 1.90
331 338 4.154918 AGGCTTTTGAGCTTCGTTCAATAG 59.845 41.667 0.00 6.56 35.95 1.73
332 339 3.848582 GCTTTTGAGCTTCGTTCAATAGC 59.151 43.478 15.48 15.48 44.40 2.97
333 340 5.034554 CTTTTGAGCTTCGTTCAATAGCA 57.965 39.130 0.00 0.00 37.37 3.49
335 342 2.621338 TGAGCTTCGTTCAATAGCAGG 58.379 47.619 0.00 0.00 37.37 4.85
336 343 2.233676 TGAGCTTCGTTCAATAGCAGGA 59.766 45.455 0.00 0.00 37.37 3.86
337 344 2.863137 GAGCTTCGTTCAATAGCAGGAG 59.137 50.000 0.00 0.00 37.37 3.69
342 353 2.159421 TCGTTCAATAGCAGGAGACGTC 60.159 50.000 7.70 7.70 0.00 4.34
376 387 1.669440 GCGACCCTGGTGTACTTCA 59.331 57.895 0.00 0.00 0.00 3.02
379 390 1.469251 CGACCCTGGTGTACTTCATCG 60.469 57.143 0.00 0.00 0.00 3.84
380 391 1.549170 GACCCTGGTGTACTTCATCGT 59.451 52.381 0.00 0.00 0.00 3.73
382 393 2.370849 ACCCTGGTGTACTTCATCGTTT 59.629 45.455 0.00 0.00 0.00 3.60
384 395 4.040706 ACCCTGGTGTACTTCATCGTTTTA 59.959 41.667 0.00 0.00 0.00 1.52
397 409 8.380644 ACTTCATCGTTTTAAGATGTTATGTCG 58.619 33.333 6.16 0.00 44.20 4.35
402 414 5.490213 GTTTTAAGATGTTATGTCGGCTCG 58.510 41.667 0.00 0.00 0.00 5.03
403 415 2.225068 AAGATGTTATGTCGGCTCGG 57.775 50.000 0.00 0.00 0.00 4.63
409 421 1.134560 GTTATGTCGGCTCGGTCTCTT 59.865 52.381 0.00 0.00 0.00 2.85
410 422 0.738975 TATGTCGGCTCGGTCTCTTG 59.261 55.000 0.00 0.00 0.00 3.02
417 429 0.318762 GCTCGGTCTCTTGAAGGTGT 59.681 55.000 0.00 0.00 0.00 4.16
420 432 2.035961 CTCGGTCTCTTGAAGGTGTTCA 59.964 50.000 0.00 0.00 41.13 3.18
431 443 8.089625 TCTTGAAGGTGTTCATATGGATAGAA 57.910 34.615 2.13 0.00 42.41 2.10
433 445 8.681486 TTGAAGGTGTTCATATGGATAGAATG 57.319 34.615 2.13 0.00 42.41 2.67
436 448 6.000219 AGGTGTTCATATGGATAGAATGTGC 59.000 40.000 2.13 0.00 0.00 4.57
437 449 5.106948 GGTGTTCATATGGATAGAATGTGCG 60.107 44.000 2.13 0.00 0.00 5.34
438 450 5.466728 GTGTTCATATGGATAGAATGTGCGT 59.533 40.000 2.13 0.00 0.00 5.24
439 451 5.466393 TGTTCATATGGATAGAATGTGCGTG 59.534 40.000 2.13 0.00 0.00 5.34
440 452 3.996363 TCATATGGATAGAATGTGCGTGC 59.004 43.478 2.13 0.00 0.00 5.34
444 456 0.999406 GATAGAATGTGCGTGCGTGT 59.001 50.000 0.00 0.00 0.00 4.49
452 464 1.330829 TGTGCGTGCGTGTTTTCATAA 59.669 42.857 0.00 0.00 0.00 1.90
475 487 7.789273 AAGGATGAGTATATATCCGTCTACG 57.211 40.000 0.00 0.00 45.95 3.51
494 506 3.707793 ACGTGAGTGACTTTGAGACTTC 58.292 45.455 0.00 0.00 46.97 3.01
497 509 4.551388 GTGAGTGACTTTGAGACTTCGAT 58.449 43.478 0.00 0.00 0.00 3.59
506 518 5.692204 ACTTTGAGACTTCGATTGTACTGTG 59.308 40.000 0.00 0.00 0.00 3.66
514 526 7.065324 AGACTTCGATTGTACTGTGTTCAAAAA 59.935 33.333 0.00 0.00 0.00 1.94
579 591 8.362464 AGAAAAACAAGAAACTCCTACCTTTT 57.638 30.769 0.00 0.00 0.00 2.27
582 594 6.944234 AACAAGAAACTCCTACCTTTTCAG 57.056 37.500 0.00 0.00 32.62 3.02
586 598 7.614192 ACAAGAAACTCCTACCTTTTCAGAAAA 59.386 33.333 8.09 8.09 32.62 2.29
630 642 1.469308 CTCACTCACACTAGACCGACC 59.531 57.143 0.00 0.00 0.00 4.79
662 674 3.114616 CGAGTCCAACAGCAGCGG 61.115 66.667 0.00 0.00 0.00 5.52
720 739 1.734163 CACGTAAAGCGAATCCCCTT 58.266 50.000 0.00 0.00 44.77 3.95
733 752 0.106268 TCCCCTTCAACTTGCTGCAA 60.106 50.000 15.16 15.16 0.00 4.08
734 753 0.971386 CCCCTTCAACTTGCTGCAAT 59.029 50.000 16.38 0.00 0.00 3.56
735 754 1.337447 CCCCTTCAACTTGCTGCAATG 60.337 52.381 16.38 12.33 0.00 2.82
736 755 1.425412 CCTTCAACTTGCTGCAATGC 58.575 50.000 16.38 0.00 0.00 3.56
737 756 1.000506 CCTTCAACTTGCTGCAATGCT 59.999 47.619 16.38 0.30 0.00 3.79
738 757 2.058798 CTTCAACTTGCTGCAATGCTG 58.941 47.619 16.38 12.81 0.00 4.41
776 795 1.619332 GCCTGGCCTATCTACCTGTAC 59.381 57.143 7.66 0.00 0.00 2.90
888 911 2.709883 GCTCCGCTCTGCTCTCTGT 61.710 63.158 0.00 0.00 0.00 3.41
950 975 2.733593 GAGCACACCACCGTCGAC 60.734 66.667 5.18 5.18 0.00 4.20
972 997 3.819016 CTCCTCCTCCCCCTAGCCG 62.819 73.684 0.00 0.00 0.00 5.52
974 999 4.548513 CTCCTCCCCCTAGCCGCT 62.549 72.222 0.00 0.00 0.00 5.52
1009 1047 2.261671 GTGTCGTGATGGCGAGGT 59.738 61.111 0.00 0.00 41.85 3.85
1064 1102 2.050351 GCTTGTGCTGCTGCTGTG 60.050 61.111 17.00 5.75 40.48 3.66
1065 1103 2.050351 CTTGTGCTGCTGCTGTGC 60.050 61.111 17.00 7.08 40.48 4.57
1066 1104 2.517638 TTGTGCTGCTGCTGTGCT 60.518 55.556 17.00 0.00 40.48 4.40
1069 1107 2.517638 TGCTGCTGCTGTGCTTGT 60.518 55.556 17.00 0.00 40.48 3.16
1071 1109 2.554775 CTGCTGCTGTGCTTGTCG 59.445 61.111 0.00 0.00 0.00 4.35
1073 1111 2.167808 CTGCTGCTGTGCTTGTCGTC 62.168 60.000 0.00 0.00 0.00 4.20
1076 1114 3.038417 GCTGTGCTTGTCGTCGCT 61.038 61.111 0.00 0.00 0.00 4.93
1077 1115 2.598632 GCTGTGCTTGTCGTCGCTT 61.599 57.895 0.00 0.00 0.00 4.68
1078 1116 1.934463 CTGTGCTTGTCGTCGCTTT 59.066 52.632 0.00 0.00 0.00 3.51
1079 1117 0.111089 CTGTGCTTGTCGTCGCTTTC 60.111 55.000 0.00 0.00 0.00 2.62
1080 1118 1.204312 GTGCTTGTCGTCGCTTTCC 59.796 57.895 0.00 0.00 0.00 3.13
1081 1119 1.227409 TGCTTGTCGTCGCTTTCCA 60.227 52.632 0.00 0.00 0.00 3.53
1082 1120 0.602638 TGCTTGTCGTCGCTTTCCAT 60.603 50.000 0.00 0.00 0.00 3.41
1140 1178 1.500396 CGACTCGATCACGGACACA 59.500 57.895 0.00 0.00 40.21 3.72
1276 1435 2.037251 GACTTCCTCAGCACCAAGTACA 59.963 50.000 0.00 0.00 0.00 2.90
1489 1648 3.791586 GCAGTGAGCCCTCCCCTC 61.792 72.222 0.00 0.00 37.23 4.30
1490 1649 2.284921 CAGTGAGCCCTCCCCTCA 60.285 66.667 0.00 0.00 37.01 3.86
1491 1650 2.040278 AGTGAGCCCTCCCCTCAG 59.960 66.667 0.00 0.00 39.79 3.35
1492 1651 2.284995 GTGAGCCCTCCCCTCAGT 60.285 66.667 0.00 0.00 39.79 3.41
1493 1652 2.039624 TGAGCCCTCCCCTCAGTC 59.960 66.667 0.00 0.00 34.59 3.51
1494 1653 2.766229 GAGCCCTCCCCTCAGTCC 60.766 72.222 0.00 0.00 0.00 3.85
1495 1654 3.288381 AGCCCTCCCCTCAGTCCT 61.288 66.667 0.00 0.00 0.00 3.85
1528 1693 7.917505 TCATGCTTTTCTTTTCTTTCTTCACTC 59.082 33.333 0.00 0.00 0.00 3.51
1621 1786 4.147449 TCCATCCAGCTGTCGCCG 62.147 66.667 13.81 0.00 36.60 6.46
1665 1830 5.297547 CCGCCATTGATAAGAGCTTTACTA 58.702 41.667 0.00 0.00 0.00 1.82
1666 1831 5.177696 CCGCCATTGATAAGAGCTTTACTAC 59.822 44.000 0.00 0.00 0.00 2.73
1667 1832 5.753438 CGCCATTGATAAGAGCTTTACTACA 59.247 40.000 0.00 0.00 0.00 2.74
1668 1833 6.292381 CGCCATTGATAAGAGCTTTACTACAC 60.292 42.308 0.00 0.00 0.00 2.90
1669 1834 6.538742 GCCATTGATAAGAGCTTTACTACACA 59.461 38.462 0.00 0.00 0.00 3.72
2060 2385 3.855503 CTGCTGCAGGCCAAGGTCA 62.856 63.158 21.71 0.76 40.92 4.02
2063 2388 3.535629 CTGCAGGCCAAGGTCACGA 62.536 63.158 5.01 0.00 0.00 4.35
2203 2546 4.336932 CATGATTTCATGCACACGTACTG 58.663 43.478 7.56 0.00 45.92 2.74
2205 2548 4.561105 TGATTTCATGCACACGTACTGTA 58.439 39.130 0.00 0.00 0.00 2.74
2207 2550 3.653539 TTCATGCACACGTACTGTACT 57.346 42.857 15.35 0.94 0.00 2.73
2208 2551 3.211803 TCATGCACACGTACTGTACTC 57.788 47.619 15.35 1.49 0.00 2.59
2209 2552 2.094906 TCATGCACACGTACTGTACTCC 60.095 50.000 15.35 1.09 0.00 3.85
2210 2553 1.612676 TGCACACGTACTGTACTCCT 58.387 50.000 15.35 0.00 0.00 3.69
2211 2554 1.958579 TGCACACGTACTGTACTCCTT 59.041 47.619 15.35 0.00 0.00 3.36
2212 2555 3.148412 TGCACACGTACTGTACTCCTTA 58.852 45.455 15.35 0.00 0.00 2.69
2213 2556 3.058016 TGCACACGTACTGTACTCCTTAC 60.058 47.826 15.35 2.48 0.00 2.34
2215 2558 2.744202 ACACGTACTGTACTCCTTACGG 59.256 50.000 15.35 0.81 41.25 4.02
2219 2562 0.807496 ACTGTACTCCTTACGGACGC 59.193 55.000 0.00 0.00 39.21 5.19
2223 2566 1.647545 TACTCCTTACGGACGCACGG 61.648 60.000 4.37 0.00 38.39 4.94
2225 2568 2.202570 CCTTACGGACGCACGGAG 60.203 66.667 4.37 2.05 38.39 4.63
2341 3033 3.461843 GCAGAGCGTTTTTGGACAG 57.538 52.632 0.00 0.00 0.00 3.51
2343 3035 1.593196 CAGAGCGTTTTTGGACAGGA 58.407 50.000 0.00 0.00 0.00 3.86
2345 3037 1.134220 AGAGCGTTTTTGGACAGGACA 60.134 47.619 0.00 0.00 0.00 4.02
2347 3039 1.134220 AGCGTTTTTGGACAGGACAGA 60.134 47.619 0.00 0.00 0.00 3.41
2348 3040 1.264288 GCGTTTTTGGACAGGACAGAG 59.736 52.381 0.00 0.00 0.00 3.35
2350 3042 1.264288 GTTTTTGGACAGGACAGAGCG 59.736 52.381 0.00 0.00 0.00 5.03
2351 3043 0.468226 TTTTGGACAGGACAGAGCGT 59.532 50.000 0.00 0.00 0.00 5.07
2352 3044 0.249868 TTTGGACAGGACAGAGCGTG 60.250 55.000 0.00 0.00 0.00 5.34
2354 3046 0.538746 TGGACAGGACAGAGCGTGTA 60.539 55.000 0.00 0.00 40.56 2.90
2355 3047 0.109226 GGACAGGACAGAGCGTGTAC 60.109 60.000 0.00 0.00 40.56 2.90
2357 3049 0.887836 ACAGGACAGAGCGTGTACGA 60.888 55.000 8.82 0.00 46.01 3.43
2358 3050 0.452184 CAGGACAGAGCGTGTACGAT 59.548 55.000 8.82 0.67 46.01 3.73
2359 3051 0.452184 AGGACAGAGCGTGTACGATG 59.548 55.000 8.82 5.97 46.01 3.84
2387 3102 1.549243 TAGCACGGGACAAGCATGGA 61.549 55.000 0.00 0.00 0.00 3.41
2388 3103 2.690778 GCACGGGACAAGCATGGAC 61.691 63.158 0.00 0.00 0.00 4.02
2390 3105 0.677731 CACGGGACAAGCATGGACAT 60.678 55.000 0.00 0.00 0.00 3.06
2392 3107 1.378882 CGGGACAAGCATGGACATGG 61.379 60.000 13.63 0.70 39.16 3.66
2393 3108 1.669999 GGGACAAGCATGGACATGGC 61.670 60.000 13.63 0.00 39.16 4.40
2394 3109 1.430632 GACAAGCATGGACATGGCG 59.569 57.895 13.63 0.00 39.16 5.69
2395 3110 2.103538 CAAGCATGGACATGGCGC 59.896 61.111 13.63 0.00 39.16 6.53
2396 3111 3.142838 AAGCATGGACATGGCGCC 61.143 61.111 22.73 22.73 39.16 6.53
2522 3265 2.281414 TGGTCACCACCACATGCG 60.281 61.111 0.00 0.00 46.63 4.73
2659 3577 1.548357 CCCAGTCCAGTCCAGTCCTG 61.548 65.000 0.00 0.00 0.00 3.86
2660 3578 0.833834 CCAGTCCAGTCCAGTCCTGT 60.834 60.000 0.00 0.00 0.00 4.00
2661 3579 1.051812 CAGTCCAGTCCAGTCCTGTT 58.948 55.000 0.00 0.00 0.00 3.16
2662 3580 1.001406 CAGTCCAGTCCAGTCCTGTTC 59.999 57.143 0.00 0.00 0.00 3.18
2663 3581 0.321996 GTCCAGTCCAGTCCTGTTCC 59.678 60.000 0.00 0.00 0.00 3.62
2700 3618 2.928116 CCGGTGAATAGAAAACGAGGTC 59.072 50.000 0.00 0.00 0.00 3.85
2769 3698 0.169672 AGTAACGACATCCCGTCACG 59.830 55.000 0.00 0.00 45.70 4.35
2797 3726 0.993470 TAATGGGGTTTGGTAGGCGT 59.007 50.000 0.00 0.00 0.00 5.68
2806 3735 1.192146 TTGGTAGGCGTTGCTCCTCT 61.192 55.000 0.00 0.00 35.21 3.69
2807 3736 1.153549 GGTAGGCGTTGCTCCTCTG 60.154 63.158 0.00 0.00 35.21 3.35
2811 3740 2.383527 GGCGTTGCTCCTCTGAACG 61.384 63.158 0.00 0.00 44.11 3.95
2907 3836 2.030862 TGGTTAACGCCGGGACAC 59.969 61.111 2.18 0.00 0.00 3.67
2921 3850 4.626081 ACACACGCCACTGCTCCC 62.626 66.667 0.00 0.00 34.43 4.30
2938 3867 3.254654 CGCACGTTGCCGATCGAT 61.255 61.111 18.66 0.00 41.12 3.59
2939 3868 2.321060 GCACGTTGCCGATCGATG 59.679 61.111 18.66 4.71 37.42 3.84
2941 3870 1.490693 GCACGTTGCCGATCGATGAT 61.491 55.000 18.66 0.00 37.42 2.45
2953 3882 4.653806 GATCGATGATCGGAAAACCATC 57.346 45.455 15.48 4.94 40.88 3.51
2954 3883 2.833794 TCGATGATCGGAAAACCATCC 58.166 47.619 15.48 0.00 40.88 3.51
2955 3884 1.873591 CGATGATCGGAAAACCATCCC 59.126 52.381 7.00 0.00 36.00 3.85
2956 3885 2.485479 CGATGATCGGAAAACCATCCCT 60.485 50.000 7.00 0.00 36.00 4.20
2957 3886 2.710096 TGATCGGAAAACCATCCCTC 57.290 50.000 0.00 0.00 36.00 4.30
2976 3905 0.030369 CCCCTCGGAATCTTCGTACG 59.970 60.000 9.53 9.53 0.00 3.67
2981 3913 0.030369 CGGAATCTTCGTACGAGGGG 59.970 60.000 24.84 15.83 0.00 4.79
3000 3932 1.515487 CGTCACGGACCCATCATGA 59.485 57.895 0.00 0.00 0.00 3.07
3006 3938 1.839994 ACGGACCCATCATGACAGATT 59.160 47.619 0.00 0.00 0.00 2.40
3011 3943 3.220110 ACCCATCATGACAGATTGATGC 58.780 45.455 10.72 0.00 45.05 3.91
3013 3945 3.634910 CCCATCATGACAGATTGATGCAA 59.365 43.478 10.72 0.00 45.05 4.08
3042 3991 3.708563 ACCAAAACGATGAACCAACTG 57.291 42.857 0.00 0.00 0.00 3.16
3051 4005 3.466836 GATGAACCAACTGACACTGTGA 58.533 45.455 15.86 0.00 0.00 3.58
3072 4026 8.482852 TGTGAGGTGATATGATCTGATCTTAA 57.517 34.615 17.82 4.72 0.00 1.85
3074 4028 7.816995 GTGAGGTGATATGATCTGATCTTAACC 59.183 40.741 17.82 17.97 0.00 2.85
3075 4029 7.732140 TGAGGTGATATGATCTGATCTTAACCT 59.268 37.037 23.55 23.55 34.98 3.50
3267 4261 1.215382 CAAGCAGATCACCGACGGA 59.785 57.895 23.38 0.00 0.00 4.69
3322 4316 3.077556 ACTAGCCAGCCACTCCCG 61.078 66.667 0.00 0.00 0.00 5.14
3335 4329 4.467084 TCCCGCTGGCCGATCAAC 62.467 66.667 0.00 0.00 40.02 3.18
3538 4558 2.928116 GCAACTGTCGTGGAATAGTACC 59.072 50.000 0.00 0.00 0.00 3.34
3591 4646 6.047511 TGATAATTGTTTTGTTCCATGGGG 57.952 37.500 13.02 0.00 0.00 4.96
3607 4662 3.955524 TGGGGAAAAAGAGTGGTACAA 57.044 42.857 0.00 0.00 44.16 2.41
3611 4666 4.021456 GGGGAAAAAGAGTGGTACAATTGG 60.021 45.833 10.83 0.00 44.16 3.16
3628 4683 7.698836 ACAATTGGATGAAAACGAAAGAAAG 57.301 32.000 10.83 0.00 0.00 2.62
3629 4684 7.488322 ACAATTGGATGAAAACGAAAGAAAGA 58.512 30.769 10.83 0.00 0.00 2.52
3630 4685 7.978975 ACAATTGGATGAAAACGAAAGAAAGAA 59.021 29.630 10.83 0.00 0.00 2.52
3631 4686 8.482429 CAATTGGATGAAAACGAAAGAAAGAAG 58.518 33.333 0.00 0.00 0.00 2.85
3632 4687 6.935741 TGGATGAAAACGAAAGAAAGAAGA 57.064 33.333 0.00 0.00 0.00 2.87
3744 4800 1.389106 CGGAGCTTTTCGGTAAAGACG 59.611 52.381 10.78 7.73 45.00 4.18
3807 4863 4.453751 GGGACTACAGAGTACAGACTAGG 58.546 52.174 0.00 0.00 38.43 3.02
3821 4877 7.345392 AGTACAGACTAGGCTAGTAGAACTAGT 59.655 40.741 26.30 23.88 46.29 2.57
3833 4889 2.860009 AGAACTAGTCACTGTGGTCGA 58.140 47.619 8.11 0.00 0.00 4.20
3861 4917 3.053291 GGCATTGCCCGTGACGAA 61.053 61.111 17.28 0.00 44.06 3.85
3863 4919 2.480555 CATTGCCCGTGACGAAGC 59.519 61.111 6.54 9.95 0.00 3.86
3885 4941 1.525995 ACAAACCGTGTCTGGCAGG 60.526 57.895 15.73 0.68 34.38 4.85
3890 4946 4.473643 CGTGTCTGGCAGGGAAAA 57.526 55.556 15.73 0.00 0.00 2.29
3893 4949 1.896660 TGTCTGGCAGGGAAAACGC 60.897 57.895 15.73 0.00 0.00 4.84
3915 4971 1.381872 GGAGAGGCTGGGAGCAGTA 60.382 63.158 0.00 0.00 44.75 2.74
3916 4972 1.398958 GGAGAGGCTGGGAGCAGTAG 61.399 65.000 0.00 0.00 44.75 2.57
3917 4973 0.686112 GAGAGGCTGGGAGCAGTAGT 60.686 60.000 0.00 0.00 44.75 2.73
3937 4993 4.820897 AGTGAACAACAGCTCGATGATTA 58.179 39.130 0.00 0.00 0.00 1.75
3938 4994 5.237815 AGTGAACAACAGCTCGATGATTAA 58.762 37.500 0.00 0.00 0.00 1.40
3939 4995 5.877012 AGTGAACAACAGCTCGATGATTAAT 59.123 36.000 0.00 0.00 0.00 1.40
3940 4996 7.041721 AGTGAACAACAGCTCGATGATTAATA 58.958 34.615 0.00 0.00 0.00 0.98
3941 4997 7.712639 AGTGAACAACAGCTCGATGATTAATAT 59.287 33.333 0.00 0.00 0.00 1.28
3942 4998 8.978539 GTGAACAACAGCTCGATGATTAATATA 58.021 33.333 0.00 0.00 0.00 0.86
3953 5009 8.394667 TCGATGATTAATATAATCGACAGTGC 57.605 34.615 18.92 0.00 45.17 4.40
3954 5010 8.244113 TCGATGATTAATATAATCGACAGTGCT 58.756 33.333 18.92 0.00 45.17 4.40
3955 5011 8.864024 CGATGATTAATATAATCGACAGTGCTT 58.136 33.333 16.79 0.00 44.63 3.91
3990 5046 2.410939 GTGAAACGAACCAGTACTCCC 58.589 52.381 0.00 0.00 0.00 4.30
3991 5047 2.036862 GTGAAACGAACCAGTACTCCCT 59.963 50.000 0.00 0.00 0.00 4.20
3992 5048 2.298163 TGAAACGAACCAGTACTCCCTC 59.702 50.000 0.00 0.00 0.00 4.30
3993 5049 1.264295 AACGAACCAGTACTCCCTCC 58.736 55.000 0.00 0.00 0.00 4.30
3994 5050 0.964358 ACGAACCAGTACTCCCTCCG 60.964 60.000 0.00 0.00 0.00 4.63
3995 5051 1.664321 CGAACCAGTACTCCCTCCGG 61.664 65.000 0.00 0.00 0.00 5.14
3996 5052 0.614134 GAACCAGTACTCCCTCCGGT 60.614 60.000 0.00 0.00 0.00 5.28
3997 5053 0.614134 AACCAGTACTCCCTCCGGTC 60.614 60.000 0.00 0.00 0.00 4.79
3998 5054 1.757340 CCAGTACTCCCTCCGGTCC 60.757 68.421 0.00 0.00 0.00 4.46
3999 5055 1.306970 CAGTACTCCCTCCGGTCCT 59.693 63.158 0.00 0.00 0.00 3.85
4000 5056 0.324460 CAGTACTCCCTCCGGTCCTT 60.324 60.000 0.00 0.00 0.00 3.36
4001 5057 0.412640 AGTACTCCCTCCGGTCCTTT 59.587 55.000 0.00 0.00 0.00 3.11
4002 5058 1.203275 AGTACTCCCTCCGGTCCTTTT 60.203 52.381 0.00 0.00 0.00 2.27
4003 5059 1.627329 GTACTCCCTCCGGTCCTTTTT 59.373 52.381 0.00 0.00 0.00 1.94
4004 5060 2.034436 ACTCCCTCCGGTCCTTTTTA 57.966 50.000 0.00 0.00 0.00 1.52
4005 5061 1.907255 ACTCCCTCCGGTCCTTTTTAG 59.093 52.381 0.00 0.00 0.00 1.85
4006 5062 1.907255 CTCCCTCCGGTCCTTTTTAGT 59.093 52.381 0.00 0.00 0.00 2.24
4007 5063 2.305052 CTCCCTCCGGTCCTTTTTAGTT 59.695 50.000 0.00 0.00 0.00 2.24
4008 5064 2.303890 TCCCTCCGGTCCTTTTTAGTTC 59.696 50.000 0.00 0.00 0.00 3.01
4009 5065 2.344025 CCTCCGGTCCTTTTTAGTTCG 58.656 52.381 0.00 0.00 0.00 3.95
4010 5066 1.730612 CTCCGGTCCTTTTTAGTTCGC 59.269 52.381 0.00 0.00 0.00 4.70
4011 5067 1.070445 TCCGGTCCTTTTTAGTTCGCA 59.930 47.619 0.00 0.00 0.00 5.10
4012 5068 2.081462 CCGGTCCTTTTTAGTTCGCAT 58.919 47.619 0.00 0.00 0.00 4.73
4013 5069 3.055963 TCCGGTCCTTTTTAGTTCGCATA 60.056 43.478 0.00 0.00 0.00 3.14
4014 5070 3.875134 CCGGTCCTTTTTAGTTCGCATAT 59.125 43.478 0.00 0.00 0.00 1.78
4015 5071 4.334481 CCGGTCCTTTTTAGTTCGCATATT 59.666 41.667 0.00 0.00 0.00 1.28
4016 5072 5.524646 CCGGTCCTTTTTAGTTCGCATATTA 59.475 40.000 0.00 0.00 0.00 0.98
4017 5073 6.292703 CCGGTCCTTTTTAGTTCGCATATTAG 60.293 42.308 0.00 0.00 0.00 1.73
4018 5074 6.477688 CGGTCCTTTTTAGTTCGCATATTAGA 59.522 38.462 0.00 0.00 0.00 2.10
4019 5075 7.170998 CGGTCCTTTTTAGTTCGCATATTAGAT 59.829 37.037 0.00 0.00 0.00 1.98
4020 5076 8.837389 GGTCCTTTTTAGTTCGCATATTAGATT 58.163 33.333 0.00 0.00 0.00 2.40
4030 5086 8.730680 AGTTCGCATATTAGATTTGTTTGAAGT 58.269 29.630 0.00 0.00 0.00 3.01
4031 5087 9.000018 GTTCGCATATTAGATTTGTTTGAAGTC 58.000 33.333 0.00 0.00 0.00 3.01
4032 5088 8.262715 TCGCATATTAGATTTGTTTGAAGTCA 57.737 30.769 0.00 0.00 0.00 3.41
4033 5089 8.726068 TCGCATATTAGATTTGTTTGAAGTCAA 58.274 29.630 0.00 0.00 0.00 3.18
4034 5090 9.003112 CGCATATTAGATTTGTTTGAAGTCAAG 57.997 33.333 0.00 0.00 37.15 3.02
4035 5091 8.801913 GCATATTAGATTTGTTTGAAGTCAAGC 58.198 33.333 1.32 1.32 37.15 4.01
4036 5092 9.294030 CATATTAGATTTGTTTGAAGTCAAGCC 57.706 33.333 5.57 0.00 36.42 4.35
4037 5093 6.959639 TTAGATTTGTTTGAAGTCAAGCCT 57.040 33.333 5.57 0.00 36.42 4.58
4038 5094 5.444663 AGATTTGTTTGAAGTCAAGCCTC 57.555 39.130 5.57 1.36 36.42 4.70
4039 5095 3.691049 TTTGTTTGAAGTCAAGCCTCG 57.309 42.857 5.57 0.00 36.42 4.63
4040 5096 2.325583 TGTTTGAAGTCAAGCCTCGT 57.674 45.000 5.57 0.00 36.42 4.18
4041 5097 3.462483 TGTTTGAAGTCAAGCCTCGTA 57.538 42.857 5.57 0.00 36.42 3.43
4042 5098 3.799366 TGTTTGAAGTCAAGCCTCGTAA 58.201 40.909 5.57 0.00 36.42 3.18
4043 5099 4.193090 TGTTTGAAGTCAAGCCTCGTAAA 58.807 39.130 5.57 0.00 36.42 2.01
4044 5100 4.272504 TGTTTGAAGTCAAGCCTCGTAAAG 59.727 41.667 5.57 0.00 36.42 1.85
4045 5101 3.746045 TGAAGTCAAGCCTCGTAAAGT 57.254 42.857 0.00 0.00 0.00 2.66
4046 5102 4.067972 TGAAGTCAAGCCTCGTAAAGTT 57.932 40.909 0.00 0.00 0.00 2.66
4047 5103 4.448210 TGAAGTCAAGCCTCGTAAAGTTT 58.552 39.130 0.00 0.00 0.00 2.66
4048 5104 4.272504 TGAAGTCAAGCCTCGTAAAGTTTG 59.727 41.667 0.00 0.00 0.00 2.93
4049 5105 4.067972 AGTCAAGCCTCGTAAAGTTTGA 57.932 40.909 0.00 0.00 0.00 2.69
4050 5106 4.642429 AGTCAAGCCTCGTAAAGTTTGAT 58.358 39.130 0.00 0.00 32.56 2.57
4051 5107 4.691216 AGTCAAGCCTCGTAAAGTTTGATC 59.309 41.667 0.00 0.00 32.56 2.92
4052 5108 4.451096 GTCAAGCCTCGTAAAGTTTGATCA 59.549 41.667 0.00 0.00 32.56 2.92
4053 5109 5.049680 GTCAAGCCTCGTAAAGTTTGATCAA 60.050 40.000 3.38 3.38 32.56 2.57
4054 5110 5.049680 TCAAGCCTCGTAAAGTTTGATCAAC 60.050 40.000 7.89 3.85 35.32 3.18
4109 5165 8.887036 TGTGAAATCAATACTAATAGATGCGT 57.113 30.769 0.00 0.00 0.00 5.24
4110 5166 8.978539 TGTGAAATCAATACTAATAGATGCGTC 58.021 33.333 0.00 0.00 0.00 5.19
4111 5167 8.978539 GTGAAATCAATACTAATAGATGCGTCA 58.021 33.333 8.99 0.00 0.00 4.35
4112 5168 9.710900 TGAAATCAATACTAATAGATGCGTCAT 57.289 29.630 8.99 0.00 0.00 3.06
4113 5169 9.964253 GAAATCAATACTAATAGATGCGTCATG 57.036 33.333 8.99 0.00 0.00 3.07
4114 5170 9.710900 AAATCAATACTAATAGATGCGTCATGA 57.289 29.630 8.99 0.00 0.00 3.07
4115 5171 8.694975 ATCAATACTAATAGATGCGTCATGAC 57.305 34.615 16.21 16.21 0.00 3.06
4116 5172 7.886338 TCAATACTAATAGATGCGTCATGACT 58.114 34.615 22.95 4.97 0.00 3.41
4117 5173 8.360390 TCAATACTAATAGATGCGTCATGACTT 58.640 33.333 22.95 11.22 0.00 3.01
4118 5174 9.626045 CAATACTAATAGATGCGTCATGACTTA 57.374 33.333 22.95 12.20 0.00 2.24
4121 5177 8.581057 ACTAATAGATGCGTCATGACTTAAAG 57.419 34.615 22.95 8.65 0.00 1.85
4122 5178 8.198109 ACTAATAGATGCGTCATGACTTAAAGT 58.802 33.333 22.95 10.69 0.00 2.66
4123 5179 7.849804 AATAGATGCGTCATGACTTAAAGTT 57.150 32.000 22.95 7.60 0.00 2.66
4124 5180 5.786401 AGATGCGTCATGACTTAAAGTTC 57.214 39.130 22.95 10.07 0.00 3.01
4125 5181 4.631813 AGATGCGTCATGACTTAAAGTTCC 59.368 41.667 22.95 3.58 0.00 3.62
4126 5182 3.734463 TGCGTCATGACTTAAAGTTCCA 58.266 40.909 22.95 4.17 0.00 3.53
4127 5183 4.323417 TGCGTCATGACTTAAAGTTCCAT 58.677 39.130 22.95 0.00 0.00 3.41
4128 5184 4.154015 TGCGTCATGACTTAAAGTTCCATG 59.846 41.667 22.95 4.43 33.93 3.66
4129 5185 4.154195 GCGTCATGACTTAAAGTTCCATGT 59.846 41.667 22.95 0.00 34.16 3.21
4130 5186 5.334879 GCGTCATGACTTAAAGTTCCATGTT 60.335 40.000 22.95 0.00 34.16 2.71
4131 5187 6.079763 CGTCATGACTTAAAGTTCCATGTTG 58.920 40.000 22.95 0.00 34.16 3.33
4132 5188 6.293407 CGTCATGACTTAAAGTTCCATGTTGT 60.293 38.462 22.95 0.00 34.16 3.32
4133 5189 7.095397 CGTCATGACTTAAAGTTCCATGTTGTA 60.095 37.037 22.95 0.00 34.16 2.41
4134 5190 8.730680 GTCATGACTTAAAGTTCCATGTTGTAT 58.269 33.333 18.83 0.00 34.16 2.29
4135 5191 9.952030 TCATGACTTAAAGTTCCATGTTGTATA 57.048 29.630 0.00 0.00 34.16 1.47
4138 5194 9.787435 TGACTTAAAGTTCCATGTTGTATAACT 57.213 29.630 3.89 0.00 37.68 2.24
4213 5269 7.681939 ACTTTGTAAAGTTTGACTTCAGACA 57.318 32.000 4.25 0.00 46.52 3.41
4214 5270 8.106247 ACTTTGTAAAGTTTGACTTCAGACAA 57.894 30.769 4.25 9.77 46.52 3.18
4215 5271 8.739972 ACTTTGTAAAGTTTGACTTCAGACAAT 58.260 29.630 4.25 0.00 46.52 2.71
4216 5272 9.573133 CTTTGTAAAGTTTGACTTCAGACAATT 57.427 29.630 0.00 0.95 37.47 2.32
4217 5273 9.567848 TTTGTAAAGTTTGACTTCAGACAATTC 57.432 29.630 0.00 0.00 37.47 2.17
4218 5274 8.506168 TGTAAAGTTTGACTTCAGACAATTCT 57.494 30.769 0.00 0.00 37.47 2.40
4219 5275 8.956426 TGTAAAGTTTGACTTCAGACAATTCTT 58.044 29.630 0.00 0.97 37.47 2.52
4225 5281 9.495754 GTTTGACTTCAGACAATTCTTATATGC 57.504 33.333 0.00 0.00 31.96 3.14
4226 5282 8.791327 TTGACTTCAGACAATTCTTATATGCA 57.209 30.769 0.00 0.00 0.00 3.96
4227 5283 8.429493 TGACTTCAGACAATTCTTATATGCAG 57.571 34.615 0.00 0.00 0.00 4.41
4228 5284 8.260114 TGACTTCAGACAATTCTTATATGCAGA 58.740 33.333 0.00 0.00 0.00 4.26
4229 5285 8.659925 ACTTCAGACAATTCTTATATGCAGAG 57.340 34.615 0.00 0.00 0.00 3.35
4230 5286 8.263640 ACTTCAGACAATTCTTATATGCAGAGT 58.736 33.333 0.00 0.00 0.00 3.24
4231 5287 9.755804 CTTCAGACAATTCTTATATGCAGAGTA 57.244 33.333 0.00 0.00 0.00 2.59
4240 5296 8.732746 TTCTTATATGCAGAGTAAAAAGGACC 57.267 34.615 0.00 0.00 0.00 4.46
4241 5297 6.984474 TCTTATATGCAGAGTAAAAAGGACCG 59.016 38.462 0.00 0.00 0.00 4.79
4242 5298 2.178912 TGCAGAGTAAAAAGGACCGG 57.821 50.000 0.00 0.00 0.00 5.28
4243 5299 1.695242 TGCAGAGTAAAAAGGACCGGA 59.305 47.619 9.46 0.00 0.00 5.14
4244 5300 2.074576 GCAGAGTAAAAAGGACCGGAC 58.925 52.381 9.46 0.00 0.00 4.79
4245 5301 2.334838 CAGAGTAAAAAGGACCGGACG 58.665 52.381 9.46 0.00 0.00 4.79
4246 5302 1.274447 AGAGTAAAAAGGACCGGACGG 59.726 52.381 9.46 9.56 42.03 4.79
4247 5303 1.273327 GAGTAAAAAGGACCGGACGGA 59.727 52.381 18.80 0.00 38.96 4.69
4248 5304 1.274447 AGTAAAAAGGACCGGACGGAG 59.726 52.381 18.80 0.00 38.96 4.63
4263 5319 1.471684 ACGGAGTACTAAAGAGGCACG 59.528 52.381 0.00 0.00 41.94 5.34
4264 5320 1.202268 CGGAGTACTAAAGAGGCACGG 60.202 57.143 0.00 0.00 0.00 4.94
4265 5321 1.823610 GGAGTACTAAAGAGGCACGGT 59.176 52.381 0.00 0.00 0.00 4.83
4266 5322 2.416972 GGAGTACTAAAGAGGCACGGTG 60.417 54.545 3.15 3.15 0.00 4.94
4267 5323 2.490903 GAGTACTAAAGAGGCACGGTGA 59.509 50.000 13.29 0.00 0.00 4.02
4268 5324 2.895404 AGTACTAAAGAGGCACGGTGAA 59.105 45.455 13.29 0.00 0.00 3.18
4269 5325 2.922740 ACTAAAGAGGCACGGTGAAA 57.077 45.000 13.29 0.00 0.00 2.69
4270 5326 3.202829 ACTAAAGAGGCACGGTGAAAA 57.797 42.857 13.29 0.00 0.00 2.29
4271 5327 3.139077 ACTAAAGAGGCACGGTGAAAAG 58.861 45.455 13.29 1.45 0.00 2.27
4272 5328 1.318576 AAAGAGGCACGGTGAAAAGG 58.681 50.000 13.29 0.00 0.00 3.11
4273 5329 1.172812 AAGAGGCACGGTGAAAAGGC 61.173 55.000 13.29 0.00 0.00 4.35
4274 5330 1.600916 GAGGCACGGTGAAAAGGCT 60.601 57.895 13.29 1.24 39.79 4.58
4275 5331 1.152756 AGGCACGGTGAAAAGGCTT 60.153 52.632 13.29 0.00 32.51 4.35
4276 5332 0.109723 AGGCACGGTGAAAAGGCTTA 59.890 50.000 13.29 0.00 32.51 3.09
4277 5333 0.240145 GGCACGGTGAAAAGGCTTAC 59.760 55.000 13.29 0.00 0.00 2.34
4278 5334 0.110373 GCACGGTGAAAAGGCTTACG 60.110 55.000 13.29 3.52 0.00 3.18
4279 5335 1.504359 CACGGTGAAAAGGCTTACGA 58.496 50.000 0.74 0.00 0.00 3.43
4280 5336 1.868498 CACGGTGAAAAGGCTTACGAA 59.132 47.619 0.74 0.00 0.00 3.85
4281 5337 2.288458 CACGGTGAAAAGGCTTACGAAA 59.712 45.455 0.74 0.00 0.00 3.46
4282 5338 2.944349 ACGGTGAAAAGGCTTACGAAAA 59.056 40.909 0.00 0.00 0.00 2.29
4283 5339 3.377798 ACGGTGAAAAGGCTTACGAAAAA 59.622 39.130 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.208224 ACACATCGTATCTTTACCCAAATGATA 58.792 33.333 0.00 0.00 34.66 2.15
3 4 6.315144 CACACATCGTATCTTTACCCAAATGA 59.685 38.462 0.00 0.00 0.00 2.57
4 5 6.486248 CACACATCGTATCTTTACCCAAATG 58.514 40.000 0.00 0.00 0.00 2.32
6 7 4.393680 GCACACATCGTATCTTTACCCAAA 59.606 41.667 0.00 0.00 0.00 3.28
7 8 3.936453 GCACACATCGTATCTTTACCCAA 59.064 43.478 0.00 0.00 0.00 4.12
8 9 3.527533 GCACACATCGTATCTTTACCCA 58.472 45.455 0.00 0.00 0.00 4.51
9 10 2.870411 GGCACACATCGTATCTTTACCC 59.130 50.000 0.00 0.00 0.00 3.69
10 11 3.555956 CAGGCACACATCGTATCTTTACC 59.444 47.826 0.00 0.00 0.00 2.85
11 12 3.001330 GCAGGCACACATCGTATCTTTAC 59.999 47.826 0.00 0.00 0.00 2.01
12 13 3.194861 GCAGGCACACATCGTATCTTTA 58.805 45.455 0.00 0.00 0.00 1.85
13 14 2.009774 GCAGGCACACATCGTATCTTT 58.990 47.619 0.00 0.00 0.00 2.52
14 15 1.656652 GCAGGCACACATCGTATCTT 58.343 50.000 0.00 0.00 0.00 2.40
15 16 0.179073 GGCAGGCACACATCGTATCT 60.179 55.000 0.00 0.00 0.00 1.98
16 17 1.490693 CGGCAGGCACACATCGTATC 61.491 60.000 0.00 0.00 0.00 2.24
17 18 1.521457 CGGCAGGCACACATCGTAT 60.521 57.895 0.00 0.00 0.00 3.06
18 19 2.125713 CGGCAGGCACACATCGTA 60.126 61.111 0.00 0.00 0.00 3.43
29 30 4.776322 TCCAATGACGGCGGCAGG 62.776 66.667 24.18 18.87 0.00 4.85
30 31 2.331893 TTTCCAATGACGGCGGCAG 61.332 57.895 24.18 8.57 0.00 4.85
31 32 2.281831 TTTCCAATGACGGCGGCA 60.282 55.556 21.84 21.84 0.00 5.69
32 33 2.178273 GTTTCCAATGACGGCGGC 59.822 61.111 13.24 9.67 0.00 6.53
33 34 1.209127 GTGTTTCCAATGACGGCGG 59.791 57.895 13.24 0.00 0.00 6.13
34 35 1.209127 GGTGTTTCCAATGACGGCG 59.791 57.895 4.80 4.80 35.97 6.46
35 36 2.336341 TGGTGTTTCCAATGACGGC 58.664 52.632 0.00 0.00 44.12 5.68
43 44 0.540830 CCCCCGATTTGGTGTTTCCA 60.541 55.000 0.00 0.00 45.60 3.53
44 45 1.884075 GCCCCCGATTTGGTGTTTCC 61.884 60.000 0.00 0.00 35.15 3.13
45 46 1.589630 GCCCCCGATTTGGTGTTTC 59.410 57.895 0.00 0.00 35.15 2.78
46 47 2.272447 CGCCCCCGATTTGGTGTTT 61.272 57.895 0.00 0.00 36.29 2.83
47 48 2.675075 CGCCCCCGATTTGGTGTT 60.675 61.111 0.00 0.00 36.29 3.32
48 49 3.961414 ACGCCCCCGATTTGGTGT 61.961 61.111 0.00 0.00 40.44 4.16
49 50 3.131478 GACGCCCCCGATTTGGTG 61.131 66.667 0.00 0.00 38.29 4.17
50 51 4.770874 CGACGCCCCCGATTTGGT 62.771 66.667 0.00 0.00 38.29 3.67
52 53 4.770874 ACCGACGCCCCCGATTTG 62.771 66.667 0.00 0.00 38.29 2.32
53 54 4.462280 GACCGACGCCCCCGATTT 62.462 66.667 0.00 0.00 38.29 2.17
55 56 3.804638 ATAGACCGACGCCCCCGAT 62.805 63.158 0.00 0.00 38.29 4.18
56 57 4.511246 ATAGACCGACGCCCCCGA 62.511 66.667 0.00 0.00 38.29 5.14
57 58 3.974757 GATAGACCGACGCCCCCG 61.975 72.222 0.00 0.00 41.14 5.73
58 59 3.974757 CGATAGACCGACGCCCCC 61.975 72.222 0.00 0.00 39.76 5.40
59 60 4.642542 GCGATAGACCGACGCCCC 62.643 72.222 0.00 0.00 45.35 5.80
69 70 1.385528 TTGCTACAGACCGCGATAGA 58.614 50.000 8.23 0.00 39.76 1.98
73 74 0.109272 CTCTTTGCTACAGACCGCGA 60.109 55.000 8.23 0.00 0.00 5.87
75 76 2.082354 GCTCTTTGCTACAGACCGC 58.918 57.895 0.00 0.00 38.95 5.68
85 86 2.481289 AAGGTACAGGAGCTCTTTGC 57.519 50.000 14.64 1.63 43.29 3.68
89 90 2.327325 TGGAAAGGTACAGGAGCTCT 57.673 50.000 14.64 0.00 33.71 4.09
90 91 3.418684 TTTGGAAAGGTACAGGAGCTC 57.581 47.619 4.71 4.71 33.71 4.09
92 93 4.142038 TCTTTTTGGAAAGGTACAGGAGC 58.858 43.478 0.00 0.00 42.05 4.70
94 95 6.893005 TCTTTTCTTTTTGGAAAGGTACAGGA 59.107 34.615 0.00 0.00 42.05 3.86
97 98 9.780186 TTTTTCTTTTCTTTTTGGAAAGGTACA 57.220 25.926 0.00 0.00 42.05 2.90
172 178 7.437267 TCGCCTTTTTCTAATTAGAACGATAGG 59.563 37.037 24.34 24.01 41.64 2.57
177 183 6.019762 GGTTCGCCTTTTTCTAATTAGAACG 58.980 40.000 24.34 22.22 41.64 3.95
178 184 6.905578 TGGTTCGCCTTTTTCTAATTAGAAC 58.094 36.000 24.34 13.29 38.88 3.01
190 196 2.496111 TCATACGTTGGTTCGCCTTTT 58.504 42.857 0.00 0.00 38.36 2.27
196 202 3.002246 CCATCCAATCATACGTTGGTTCG 59.998 47.826 0.00 0.00 45.05 3.95
197 203 3.945285 ACCATCCAATCATACGTTGGTTC 59.055 43.478 0.00 0.00 45.05 3.62
204 211 5.696724 GTCCTTCTAACCATCCAATCATACG 59.303 44.000 0.00 0.00 0.00 3.06
205 212 6.591935 TGTCCTTCTAACCATCCAATCATAC 58.408 40.000 0.00 0.00 0.00 2.39
206 213 6.823286 TGTCCTTCTAACCATCCAATCATA 57.177 37.500 0.00 0.00 0.00 2.15
207 214 5.715439 TGTCCTTCTAACCATCCAATCAT 57.285 39.130 0.00 0.00 0.00 2.45
210 217 6.078456 TCATTGTCCTTCTAACCATCCAAT 57.922 37.500 0.00 0.00 0.00 3.16
223 230 3.372025 GGCTTGAGGGTATCATTGTCCTT 60.372 47.826 0.00 0.00 37.89 3.36
226 233 2.945668 GTGGCTTGAGGGTATCATTGTC 59.054 50.000 0.00 0.00 37.89 3.18
229 236 1.922447 TGGTGGCTTGAGGGTATCATT 59.078 47.619 0.00 0.00 37.89 2.57
230 237 1.492176 CTGGTGGCTTGAGGGTATCAT 59.508 52.381 0.00 0.00 37.89 2.45
233 240 1.281925 CCCTGGTGGCTTGAGGGTAT 61.282 60.000 0.00 0.00 41.58 2.73
237 244 0.404040 TAAACCCTGGTGGCTTGAGG 59.596 55.000 0.00 0.00 37.83 3.86
239 246 1.497286 ACTTAAACCCTGGTGGCTTGA 59.503 47.619 0.00 0.00 37.83 3.02
244 251 3.055312 GTCTAGGACTTAAACCCTGGTGG 60.055 52.174 5.76 0.00 41.37 4.61
260 267 5.394663 CCACCTATGTCAAGTCAAGTCTAGG 60.395 48.000 0.00 0.00 0.00 3.02
317 324 2.497675 TCTCCTGCTATTGAACGAAGCT 59.502 45.455 0.00 0.00 37.16 3.74
320 327 2.230508 ACGTCTCCTGCTATTGAACGAA 59.769 45.455 0.00 0.00 0.00 3.85
321 328 1.816835 ACGTCTCCTGCTATTGAACGA 59.183 47.619 0.00 0.00 0.00 3.85
322 329 2.186076 GACGTCTCCTGCTATTGAACG 58.814 52.381 8.70 0.00 0.00 3.95
326 333 1.471676 GGTGGACGTCTCCTGCTATTG 60.472 57.143 16.46 0.00 37.48 1.90
327 334 0.824759 GGTGGACGTCTCCTGCTATT 59.175 55.000 16.46 0.00 37.48 1.73
328 335 0.033011 AGGTGGACGTCTCCTGCTAT 60.033 55.000 24.11 7.35 37.48 2.97
330 337 1.979693 GAGGTGGACGTCTCCTGCT 60.980 63.158 27.71 11.92 37.48 4.24
331 338 2.574399 GAGGTGGACGTCTCCTGC 59.426 66.667 27.71 18.41 37.48 4.85
332 339 1.674651 TCGAGGTGGACGTCTCCTG 60.675 63.158 27.71 20.88 37.48 3.86
333 340 1.674980 GTCGAGGTGGACGTCTCCT 60.675 63.158 24.66 24.66 37.48 3.69
335 342 0.726256 GTAGTCGAGGTGGACGTCTC 59.274 60.000 16.46 8.99 41.81 3.36
336 343 1.018226 CGTAGTCGAGGTGGACGTCT 61.018 60.000 16.46 0.00 41.81 4.18
337 344 1.016130 TCGTAGTCGAGGTGGACGTC 61.016 60.000 7.13 7.13 41.35 4.34
361 372 1.640917 ACGATGAAGTACACCAGGGT 58.359 50.000 0.00 0.00 0.00 4.34
363 374 5.929992 TCTTAAAACGATGAAGTACACCAGG 59.070 40.000 0.00 0.00 0.00 4.45
376 387 5.815740 AGCCGACATAACATCTTAAAACGAT 59.184 36.000 0.00 0.00 0.00 3.73
379 390 5.490213 CGAGCCGACATAACATCTTAAAAC 58.510 41.667 0.00 0.00 0.00 2.43
380 391 4.569162 CCGAGCCGACATAACATCTTAAAA 59.431 41.667 0.00 0.00 0.00 1.52
382 393 3.131577 ACCGAGCCGACATAACATCTTAA 59.868 43.478 0.00 0.00 0.00 1.85
384 395 1.480954 ACCGAGCCGACATAACATCTT 59.519 47.619 0.00 0.00 0.00 2.40
395 407 1.595993 CCTTCAAGAGACCGAGCCGA 61.596 60.000 0.00 0.00 0.00 5.54
397 409 0.390472 CACCTTCAAGAGACCGAGCC 60.390 60.000 0.00 0.00 0.00 4.70
402 414 4.878397 CCATATGAACACCTTCAAGAGACC 59.122 45.833 3.65 0.00 39.90 3.85
403 415 5.734720 TCCATATGAACACCTTCAAGAGAC 58.265 41.667 3.65 0.00 39.90 3.36
409 421 7.716560 CACATTCTATCCATATGAACACCTTCA 59.283 37.037 3.65 0.00 40.77 3.02
410 422 7.308229 GCACATTCTATCCATATGAACACCTTC 60.308 40.741 3.65 0.00 0.00 3.46
417 429 4.452114 GCACGCACATTCTATCCATATGAA 59.548 41.667 3.65 0.00 0.00 2.57
420 432 2.995939 CGCACGCACATTCTATCCATAT 59.004 45.455 0.00 0.00 0.00 1.78
431 443 0.310543 ATGAAAACACGCACGCACAT 59.689 45.000 0.00 0.00 0.00 3.21
433 445 1.969256 CTTATGAAAACACGCACGCAC 59.031 47.619 0.00 0.00 0.00 5.34
436 448 3.124466 TCATCCTTATGAAAACACGCACG 59.876 43.478 0.00 0.00 39.20 5.34
437 449 4.154195 ACTCATCCTTATGAAAACACGCAC 59.846 41.667 0.00 0.00 41.57 5.34
438 450 4.323417 ACTCATCCTTATGAAAACACGCA 58.677 39.130 0.00 0.00 41.57 5.24
439 451 4.946784 ACTCATCCTTATGAAAACACGC 57.053 40.909 0.00 0.00 41.57 5.34
452 464 6.762187 CACGTAGACGGATATATACTCATCCT 59.238 42.308 7.04 0.00 44.95 3.24
466 478 1.888215 AAGTCACTCACGTAGACGGA 58.112 50.000 7.04 0.56 44.95 4.69
467 479 2.031420 TCAAAGTCACTCACGTAGACGG 60.031 50.000 7.04 0.00 44.95 4.79
469 481 4.023878 AGTCTCAAAGTCACTCACGTAGAC 60.024 45.833 0.00 0.00 0.00 2.59
471 483 4.491234 AGTCTCAAAGTCACTCACGTAG 57.509 45.455 0.00 0.00 0.00 3.51
474 486 2.721603 CGAAGTCTCAAAGTCACTCACG 59.278 50.000 0.00 0.00 0.00 4.35
475 487 3.966154 TCGAAGTCTCAAAGTCACTCAC 58.034 45.455 0.00 0.00 0.00 3.51
480 492 5.920840 CAGTACAATCGAAGTCTCAAAGTCA 59.079 40.000 0.00 0.00 0.00 3.41
481 493 5.921408 ACAGTACAATCGAAGTCTCAAAGTC 59.079 40.000 0.00 0.00 0.00 3.01
482 494 5.692204 CACAGTACAATCGAAGTCTCAAAGT 59.308 40.000 0.00 0.00 0.00 2.66
483 495 5.692204 ACACAGTACAATCGAAGTCTCAAAG 59.308 40.000 0.00 0.00 0.00 2.77
484 496 5.597806 ACACAGTACAATCGAAGTCTCAAA 58.402 37.500 0.00 0.00 0.00 2.69
485 497 5.196341 ACACAGTACAATCGAAGTCTCAA 57.804 39.130 0.00 0.00 0.00 3.02
486 498 4.848562 ACACAGTACAATCGAAGTCTCA 57.151 40.909 0.00 0.00 0.00 3.27
487 499 5.220381 TGAACACAGTACAATCGAAGTCTC 58.780 41.667 0.00 0.00 0.00 3.36
488 500 5.196341 TGAACACAGTACAATCGAAGTCT 57.804 39.130 0.00 0.00 0.00 3.24
546 558 7.936847 AGGAGTTTCTTGTTTTTCTTGGTTTTT 59.063 29.630 0.00 0.00 0.00 1.94
547 559 7.450074 AGGAGTTTCTTGTTTTTCTTGGTTTT 58.550 30.769 0.00 0.00 0.00 2.43
548 560 7.004555 AGGAGTTTCTTGTTTTTCTTGGTTT 57.995 32.000 0.00 0.00 0.00 3.27
549 561 6.605471 AGGAGTTTCTTGTTTTTCTTGGTT 57.395 33.333 0.00 0.00 0.00 3.67
550 562 6.096423 GGTAGGAGTTTCTTGTTTTTCTTGGT 59.904 38.462 0.00 0.00 0.00 3.67
551 563 6.321435 AGGTAGGAGTTTCTTGTTTTTCTTGG 59.679 38.462 0.00 0.00 0.00 3.61
552 564 7.334844 AGGTAGGAGTTTCTTGTTTTTCTTG 57.665 36.000 0.00 0.00 0.00 3.02
606 618 2.526432 GGTCTAGTGTGAGTGAGGGAA 58.474 52.381 0.00 0.00 0.00 3.97
720 739 3.877874 CAGCATTGCAGCAAGTTGA 57.122 47.368 14.47 0.00 36.85 3.18
735 754 2.045634 TGGAGGAGTGCATGCAGC 60.046 61.111 23.41 16.21 45.96 5.25
736 755 1.002990 TGTGGAGGAGTGCATGCAG 60.003 57.895 23.41 0.00 0.00 4.41
737 756 1.302752 GTGTGGAGGAGTGCATGCA 60.303 57.895 18.46 18.46 0.00 3.96
738 757 2.393768 CGTGTGGAGGAGTGCATGC 61.394 63.158 11.82 11.82 0.00 4.06
739 758 2.393768 GCGTGTGGAGGAGTGCATG 61.394 63.158 0.00 0.00 0.00 4.06
740 759 2.046892 GCGTGTGGAGGAGTGCAT 60.047 61.111 0.00 0.00 0.00 3.96
776 795 3.928769 CCATGGTCGACGCGCATG 61.929 66.667 20.13 20.13 0.00 4.06
945 970 2.442458 GAGGAGGAGGGGGTCGAC 60.442 72.222 7.13 7.13 0.00 4.20
992 1017 1.805945 GACCTCGCCATCACGACAC 60.806 63.158 0.00 0.00 37.09 3.67
993 1018 2.571757 GACCTCGCCATCACGACA 59.428 61.111 0.00 0.00 37.09 4.35
995 1020 3.047718 GACGACCTCGCCATCACGA 62.048 63.158 0.00 0.00 44.43 4.35
1060 1098 0.111089 GAAAGCGACGACAAGCACAG 60.111 55.000 0.00 0.00 35.48 3.66
1061 1099 1.495584 GGAAAGCGACGACAAGCACA 61.496 55.000 0.00 0.00 35.48 4.57
1064 1102 0.179215 CATGGAAAGCGACGACAAGC 60.179 55.000 0.00 0.00 0.00 4.01
1065 1103 0.443869 CCATGGAAAGCGACGACAAG 59.556 55.000 5.56 0.00 0.00 3.16
1066 1104 1.573829 GCCATGGAAAGCGACGACAA 61.574 55.000 18.40 0.00 0.00 3.18
1140 1178 1.152756 GTTGGTGCACAGGTTCCCT 60.153 57.895 20.43 0.00 0.00 4.20
1480 1639 1.075600 GAGAGGACTGAGGGGAGGG 60.076 68.421 0.00 0.00 0.00 4.30
1488 1647 1.126488 GCATGATGGGAGAGGACTGA 58.874 55.000 0.00 0.00 0.00 3.41
1489 1648 1.129917 AGCATGATGGGAGAGGACTG 58.870 55.000 0.00 0.00 0.00 3.51
1490 1649 1.890552 AAGCATGATGGGAGAGGACT 58.109 50.000 0.00 0.00 0.00 3.85
1491 1650 2.725221 AAAGCATGATGGGAGAGGAC 57.275 50.000 0.00 0.00 0.00 3.85
1492 1651 2.848694 AGAAAAGCATGATGGGAGAGGA 59.151 45.455 0.00 0.00 0.00 3.71
1493 1652 3.294038 AGAAAAGCATGATGGGAGAGG 57.706 47.619 0.00 0.00 0.00 3.69
1494 1653 5.418209 AGAAAAGAAAAGCATGATGGGAGAG 59.582 40.000 0.00 0.00 0.00 3.20
1495 1654 5.327732 AGAAAAGAAAAGCATGATGGGAGA 58.672 37.500 0.00 0.00 0.00 3.71
1528 1693 2.681421 GGGCTGGGCTTTGAAGGG 60.681 66.667 0.00 0.00 0.00 3.95
1567 1732 2.017752 GCTCGTGCATTAAGGGAGC 58.982 57.895 4.26 1.98 42.68 4.70
1665 1830 0.188342 AGGCCCCATGAAAAGTGTGT 59.812 50.000 0.00 0.00 0.00 3.72
1666 1831 0.604578 CAGGCCCCATGAAAAGTGTG 59.395 55.000 0.00 0.00 0.00 3.82
1667 1832 0.542702 CCAGGCCCCATGAAAAGTGT 60.543 55.000 0.00 0.00 0.00 3.55
1668 1833 1.891722 GCCAGGCCCCATGAAAAGTG 61.892 60.000 0.00 0.00 0.00 3.16
1669 1834 1.610379 GCCAGGCCCCATGAAAAGT 60.610 57.895 0.00 0.00 0.00 2.66
1701 1866 5.065090 ACAATAGTGATAGTACACACGCGTA 59.935 40.000 13.44 0.00 42.45 4.42
1703 1868 4.348656 ACAATAGTGATAGTACACACGCG 58.651 43.478 3.53 3.53 42.45 6.01
1713 1878 3.003068 GCAGCCTGCAACAATAGTGATAG 59.997 47.826 12.82 0.00 44.26 2.08
1714 1879 2.945008 GCAGCCTGCAACAATAGTGATA 59.055 45.455 12.82 0.00 44.26 2.15
2167 2495 7.764695 ATGAAATCATGTACGTATGAACGAA 57.235 32.000 5.16 0.00 42.55 3.85
2209 2552 2.202570 CCTCCGTGCGTCCGTAAG 60.203 66.667 0.00 0.00 0.00 2.34
2210 2553 3.751246 CCCTCCGTGCGTCCGTAA 61.751 66.667 0.00 0.00 0.00 3.18
2219 2562 2.895424 AAACTCCAGCCCCTCCGTG 61.895 63.158 0.00 0.00 0.00 4.94
2223 2566 2.361737 GCCAAACTCCAGCCCCTC 60.362 66.667 0.00 0.00 0.00 4.30
2275 2618 0.934496 CAGTCACGGCGAGTTTGAAA 59.066 50.000 16.62 0.00 0.00 2.69
2310 2653 4.829518 TCTGCGATGCCGACGACG 62.830 66.667 0.00 0.00 38.22 5.12
2311 2654 2.951745 CTCTGCGATGCCGACGAC 60.952 66.667 0.00 0.00 38.22 4.34
2312 2655 4.854784 GCTCTGCGATGCCGACGA 62.855 66.667 0.00 0.00 38.22 4.20
2323 2666 0.040067 CCTGTCCAAAAACGCTCTGC 60.040 55.000 0.00 0.00 0.00 4.26
2324 2667 1.264288 GTCCTGTCCAAAAACGCTCTG 59.736 52.381 0.00 0.00 0.00 3.35
2340 3032 0.452184 CATCGTACACGCTCTGTCCT 59.548 55.000 0.00 0.00 39.60 3.85
2341 3033 0.525668 CCATCGTACACGCTCTGTCC 60.526 60.000 0.00 0.00 39.60 4.02
2343 3035 0.452184 CTCCATCGTACACGCTCTGT 59.548 55.000 0.00 0.00 39.60 3.41
2345 3037 1.313091 TGCTCCATCGTACACGCTCT 61.313 55.000 0.00 0.00 39.60 4.09
2347 3039 1.139734 CTGCTCCATCGTACACGCT 59.860 57.895 0.00 0.00 39.60 5.07
2348 3040 1.153823 ACTGCTCCATCGTACACGC 60.154 57.895 0.00 0.00 39.60 5.34
2350 3042 2.798680 CTACACTGCTCCATCGTACAC 58.201 52.381 0.00 0.00 0.00 2.90
2351 3043 1.134367 GCTACACTGCTCCATCGTACA 59.866 52.381 0.00 0.00 0.00 2.90
2352 3044 1.134367 TGCTACACTGCTCCATCGTAC 59.866 52.381 0.00 0.00 0.00 3.67
2354 3046 0.108615 GTGCTACACTGCTCCATCGT 60.109 55.000 0.00 0.00 0.00 3.73
2355 3047 1.142185 CGTGCTACACTGCTCCATCG 61.142 60.000 0.00 0.00 31.34 3.84
2357 3049 1.219124 CCGTGCTACACTGCTCCAT 59.781 57.895 0.00 0.00 31.34 3.41
2358 3050 2.656646 CCGTGCTACACTGCTCCA 59.343 61.111 0.00 0.00 31.34 3.86
2359 3051 2.125512 CCCGTGCTACACTGCTCC 60.126 66.667 0.00 0.00 31.34 4.70
2387 3102 0.467290 ATTTAATCCCGGCGCCATGT 60.467 50.000 28.98 8.84 0.00 3.21
2388 3103 0.039256 CATTTAATCCCGGCGCCATG 60.039 55.000 28.98 16.97 0.00 3.66
2390 3105 0.180642 TACATTTAATCCCGGCGCCA 59.819 50.000 28.98 7.49 0.00 5.69
2392 3107 0.872388 CCTACATTTAATCCCGGCGC 59.128 55.000 0.00 0.00 0.00 6.53
2393 3108 2.536761 TCCTACATTTAATCCCGGCG 57.463 50.000 0.00 0.00 0.00 6.46
2394 3109 6.183360 CGAATAATCCTACATTTAATCCCGGC 60.183 42.308 0.00 0.00 0.00 6.13
2395 3110 6.315393 CCGAATAATCCTACATTTAATCCCGG 59.685 42.308 0.00 0.00 0.00 5.73
2396 3111 6.183360 GCCGAATAATCCTACATTTAATCCCG 60.183 42.308 0.00 0.00 0.00 5.14
2397 3112 6.183360 CGCCGAATAATCCTACATTTAATCCC 60.183 42.308 0.00 0.00 0.00 3.85
2474 3201 1.743252 GCAGTGCAGGACTAGTGGC 60.743 63.158 11.09 1.56 31.73 5.01
2769 3698 2.677914 CAAACCCCATTATTCTCCCCC 58.322 52.381 0.00 0.00 0.00 5.40
2775 3704 2.621526 CGCCTACCAAACCCCATTATTC 59.378 50.000 0.00 0.00 0.00 1.75
2797 3726 2.347490 GCCCGTTCAGAGGAGCAA 59.653 61.111 0.00 0.00 0.00 3.91
2806 3735 2.740826 GCAAGTAGCGCCCGTTCA 60.741 61.111 2.29 0.00 0.00 3.18
2937 3866 2.158608 GGAGGGATGGTTTTCCGATCAT 60.159 50.000 0.00 0.00 44.36 2.45
2938 3867 1.211949 GGAGGGATGGTTTTCCGATCA 59.788 52.381 0.00 0.00 44.36 2.92
2939 3868 1.477014 GGGAGGGATGGTTTTCCGATC 60.477 57.143 0.00 0.00 44.36 3.69
2941 3870 1.568118 GGGGAGGGATGGTTTTCCGA 61.568 60.000 0.00 0.00 44.36 4.55
2943 3872 0.259065 GAGGGGAGGGATGGTTTTCC 59.741 60.000 0.00 0.00 41.14 3.13
2944 3873 0.107165 CGAGGGGAGGGATGGTTTTC 60.107 60.000 0.00 0.00 0.00 2.29
2945 3874 1.571773 CCGAGGGGAGGGATGGTTTT 61.572 60.000 0.00 0.00 34.06 2.43
2946 3875 2.001269 CCGAGGGGAGGGATGGTTT 61.001 63.158 0.00 0.00 34.06 3.27
2947 3876 2.366972 CCGAGGGGAGGGATGGTT 60.367 66.667 0.00 0.00 34.06 3.67
2948 3877 2.271493 ATTCCGAGGGGAGGGATGGT 62.271 60.000 0.00 0.00 44.98 3.55
2949 3878 1.462238 ATTCCGAGGGGAGGGATGG 60.462 63.158 0.00 0.00 44.98 3.51
2950 3879 0.472734 AGATTCCGAGGGGAGGGATG 60.473 60.000 0.00 0.00 44.98 3.51
2951 3880 0.269173 AAGATTCCGAGGGGAGGGAT 59.731 55.000 0.00 0.00 44.98 3.85
2952 3881 0.398664 GAAGATTCCGAGGGGAGGGA 60.399 60.000 0.00 0.00 44.98 4.20
2953 3882 1.749334 CGAAGATTCCGAGGGGAGGG 61.749 65.000 0.00 0.00 44.98 4.30
2954 3883 1.043673 ACGAAGATTCCGAGGGGAGG 61.044 60.000 0.00 0.00 44.98 4.30
2955 3884 1.337387 GTACGAAGATTCCGAGGGGAG 59.663 57.143 0.00 0.00 44.98 4.30
2956 3885 1.396653 GTACGAAGATTCCGAGGGGA 58.603 55.000 0.00 0.00 41.83 4.81
2957 3886 0.030369 CGTACGAAGATTCCGAGGGG 59.970 60.000 10.44 0.00 0.00 4.79
2981 3913 2.173669 CATGATGGGTCCGTGACGC 61.174 63.158 0.00 12.18 44.15 5.19
3000 3932 4.794278 TTCTTGCATTGCATCAATCTGT 57.206 36.364 12.95 0.00 38.76 3.41
3006 3938 3.747854 TTGGTTTCTTGCATTGCATCA 57.252 38.095 12.95 0.00 38.76 3.07
3011 3943 4.744137 TCATCGTTTTGGTTTCTTGCATTG 59.256 37.500 0.00 0.00 0.00 2.82
3013 3945 4.582701 TCATCGTTTTGGTTTCTTGCAT 57.417 36.364 0.00 0.00 0.00 3.96
3042 3991 5.068329 TCAGATCATATCACCTCACAGTGTC 59.932 44.000 0.00 0.00 38.91 3.67
3051 4005 8.373981 CAAGGTTAAGATCAGATCATATCACCT 58.626 37.037 13.14 11.96 0.00 4.00
3072 4026 1.887956 GCATCCACATCCACACAAGGT 60.888 52.381 0.00 0.00 0.00 3.50
3074 4028 1.471287 CTGCATCCACATCCACACAAG 59.529 52.381 0.00 0.00 0.00 3.16
3075 4029 1.536940 CTGCATCCACATCCACACAA 58.463 50.000 0.00 0.00 0.00 3.33
3246 4240 1.269166 CGTCGGTGATCTGCTTGTAC 58.731 55.000 0.00 0.00 0.00 2.90
3294 4288 2.374830 CTGGCTAGTGGGAGATGCCG 62.375 65.000 0.00 0.00 45.90 5.69
3301 4295 1.990060 GAGTGGCTGGCTAGTGGGA 60.990 63.158 2.00 0.00 0.00 4.37
3327 4321 0.745486 TGCATGAGCTGGTTGATCGG 60.745 55.000 0.00 0.00 42.74 4.18
3335 4329 1.485838 GACGACGATGCATGAGCTGG 61.486 60.000 2.46 0.00 42.74 4.85
3427 4432 2.707257 AGTCCCCAGAAACGTTTCCTTA 59.293 45.455 31.87 14.34 37.92 2.69
3428 4433 1.493446 AGTCCCCAGAAACGTTTCCTT 59.507 47.619 31.87 15.97 37.92 3.36
3429 4434 1.137697 AGTCCCCAGAAACGTTTCCT 58.862 50.000 31.87 19.95 37.92 3.36
3490 4510 5.948162 TCATTCTTTCCCCTTTCTTCATCAG 59.052 40.000 0.00 0.00 0.00 2.90
3591 4646 7.214467 TCATCCAATTGTACCACTCTTTTTC 57.786 36.000 4.43 0.00 0.00 2.29
3597 4652 5.180492 TCGTTTTCATCCAATTGTACCACTC 59.820 40.000 4.43 0.00 0.00 3.51
3607 4662 7.940850 TCTTCTTTCTTTCGTTTTCATCCAAT 58.059 30.769 0.00 0.00 0.00 3.16
3669 4725 3.268103 AAACCCCTAGCTGCCACGG 62.268 63.158 0.00 0.00 0.00 4.94
3679 4735 2.619590 GGCGAAAAGATCCAAACCCCTA 60.620 50.000 0.00 0.00 0.00 3.53
3685 4741 0.887933 GCCAGGCGAAAAGATCCAAA 59.112 50.000 0.00 0.00 0.00 3.28
3744 4800 1.427020 GAGGCGAGATTTGTGCAGC 59.573 57.895 0.00 0.00 0.00 5.25
3821 4877 1.232621 ACGACGATCGACCACAGTGA 61.233 55.000 24.34 0.00 43.74 3.41
3833 4889 2.202878 CAATGCCCCGACGACGAT 60.203 61.111 9.28 0.00 42.66 3.73
3885 4941 1.377333 CCTCTCCTGGGCGTTTTCC 60.377 63.158 0.00 0.00 0.00 3.13
3907 4963 1.801178 GCTGTTGTTCACTACTGCTCC 59.199 52.381 13.45 0.00 40.90 4.70
3908 4964 2.760374 AGCTGTTGTTCACTACTGCTC 58.240 47.619 16.29 0.00 46.89 4.26
3915 4971 2.820059 TCATCGAGCTGTTGTTCACT 57.180 45.000 0.00 0.00 0.00 3.41
3916 4972 5.530519 TTAATCATCGAGCTGTTGTTCAC 57.469 39.130 0.00 0.00 0.00 3.18
3917 4973 9.541143 TTATATTAATCATCGAGCTGTTGTTCA 57.459 29.630 0.00 0.00 0.00 3.18
3953 5009 3.319137 TCACGGAGATGAAACAGGAAG 57.681 47.619 0.00 0.00 0.00 3.46
3954 5010 3.762407 TTCACGGAGATGAAACAGGAA 57.238 42.857 0.00 0.00 35.65 3.36
3955 5011 3.762407 TTTCACGGAGATGAAACAGGA 57.238 42.857 0.00 0.00 42.32 3.86
3990 5046 1.730612 GCGAACTAAAAAGGACCGGAG 59.269 52.381 9.46 0.00 0.00 4.63
3991 5047 1.070445 TGCGAACTAAAAAGGACCGGA 59.930 47.619 9.46 0.00 0.00 5.14
3992 5048 1.515081 TGCGAACTAAAAAGGACCGG 58.485 50.000 0.00 0.00 0.00 5.28
3993 5049 5.479716 AATATGCGAACTAAAAAGGACCG 57.520 39.130 0.00 0.00 0.00 4.79
3994 5050 7.781548 TCTAATATGCGAACTAAAAAGGACC 57.218 36.000 0.00 0.00 0.00 4.46
4004 5060 8.730680 ACTTCAAACAAATCTAATATGCGAACT 58.269 29.630 0.00 0.00 0.00 3.01
4005 5061 8.895932 ACTTCAAACAAATCTAATATGCGAAC 57.104 30.769 0.00 0.00 0.00 3.95
4006 5062 8.726068 TGACTTCAAACAAATCTAATATGCGAA 58.274 29.630 0.00 0.00 0.00 4.70
4007 5063 8.262715 TGACTTCAAACAAATCTAATATGCGA 57.737 30.769 0.00 0.00 0.00 5.10
4008 5064 8.894409 TTGACTTCAAACAAATCTAATATGCG 57.106 30.769 0.00 0.00 32.11 4.73
4009 5065 8.801913 GCTTGACTTCAAACAAATCTAATATGC 58.198 33.333 0.00 0.00 35.15 3.14
4010 5066 9.294030 GGCTTGACTTCAAACAAATCTAATATG 57.706 33.333 0.00 0.00 35.15 1.78
4011 5067 9.247861 AGGCTTGACTTCAAACAAATCTAATAT 57.752 29.630 0.00 0.00 35.15 1.28
4012 5068 8.635765 AGGCTTGACTTCAAACAAATCTAATA 57.364 30.769 0.00 0.00 35.15 0.98
4013 5069 7.530426 AGGCTTGACTTCAAACAAATCTAAT 57.470 32.000 0.00 0.00 35.15 1.73
4014 5070 6.293407 CGAGGCTTGACTTCAAACAAATCTAA 60.293 38.462 0.00 0.00 35.15 2.10
4015 5071 5.179368 CGAGGCTTGACTTCAAACAAATCTA 59.821 40.000 0.00 0.00 35.15 1.98
4016 5072 4.023707 CGAGGCTTGACTTCAAACAAATCT 60.024 41.667 0.00 0.00 35.15 2.40
4017 5073 4.222114 CGAGGCTTGACTTCAAACAAATC 58.778 43.478 0.00 0.00 35.15 2.17
4018 5074 3.632145 ACGAGGCTTGACTTCAAACAAAT 59.368 39.130 9.20 0.00 35.15 2.32
4019 5075 3.013921 ACGAGGCTTGACTTCAAACAAA 58.986 40.909 9.20 0.00 35.15 2.83
4020 5076 2.639065 ACGAGGCTTGACTTCAAACAA 58.361 42.857 9.20 0.00 35.15 2.83
4021 5077 2.325583 ACGAGGCTTGACTTCAAACA 57.674 45.000 9.20 0.00 35.15 2.83
4022 5078 4.272748 ACTTTACGAGGCTTGACTTCAAAC 59.727 41.667 9.20 0.00 35.15 2.93
4023 5079 4.448210 ACTTTACGAGGCTTGACTTCAAA 58.552 39.130 9.20 0.37 35.15 2.69
4024 5080 4.067972 ACTTTACGAGGCTTGACTTCAA 57.932 40.909 9.20 0.00 0.00 2.69
4025 5081 3.746045 ACTTTACGAGGCTTGACTTCA 57.254 42.857 9.20 0.00 0.00 3.02
4026 5082 4.510340 TCAAACTTTACGAGGCTTGACTTC 59.490 41.667 9.20 0.00 30.70 3.01
4027 5083 4.448210 TCAAACTTTACGAGGCTTGACTT 58.552 39.130 9.20 0.00 30.70 3.01
4028 5084 4.067972 TCAAACTTTACGAGGCTTGACT 57.932 40.909 9.20 0.00 30.70 3.41
4029 5085 4.451096 TGATCAAACTTTACGAGGCTTGAC 59.549 41.667 9.20 0.00 35.46 3.18
4030 5086 4.637276 TGATCAAACTTTACGAGGCTTGA 58.363 39.130 9.20 0.00 36.42 3.02
4031 5087 5.147162 GTTGATCAAACTTTACGAGGCTTG 58.853 41.667 10.35 0.00 35.75 4.01
4032 5088 5.358298 GTTGATCAAACTTTACGAGGCTT 57.642 39.130 10.35 0.00 35.75 4.35
4083 5139 9.494271 ACGCATCTATTAGTATTGATTTCACAT 57.506 29.630 0.00 0.00 0.00 3.21
4084 5140 8.887036 ACGCATCTATTAGTATTGATTTCACA 57.113 30.769 0.00 0.00 0.00 3.58
4085 5141 8.978539 TGACGCATCTATTAGTATTGATTTCAC 58.021 33.333 0.00 0.00 0.00 3.18
4086 5142 9.710900 ATGACGCATCTATTAGTATTGATTTCA 57.289 29.630 0.00 0.00 0.00 2.69
4087 5143 9.964253 CATGACGCATCTATTAGTATTGATTTC 57.036 33.333 0.00 0.00 0.00 2.17
4088 5144 9.710900 TCATGACGCATCTATTAGTATTGATTT 57.289 29.630 0.00 0.00 0.00 2.17
4089 5145 9.144747 GTCATGACGCATCTATTAGTATTGATT 57.855 33.333 10.69 0.00 0.00 2.57
4090 5146 8.526978 AGTCATGACGCATCTATTAGTATTGAT 58.473 33.333 19.85 0.00 36.20 2.57
4091 5147 7.886338 AGTCATGACGCATCTATTAGTATTGA 58.114 34.615 19.85 0.00 36.20 2.57
4092 5148 8.526218 AAGTCATGACGCATCTATTAGTATTG 57.474 34.615 19.85 0.00 36.20 1.90
4095 5151 9.678941 CTTTAAGTCATGACGCATCTATTAGTA 57.321 33.333 19.85 3.72 36.20 1.82
4096 5152 8.198109 ACTTTAAGTCATGACGCATCTATTAGT 58.802 33.333 19.85 11.40 36.20 2.24
4097 5153 8.581057 ACTTTAAGTCATGACGCATCTATTAG 57.419 34.615 19.85 10.86 36.20 1.73
4098 5154 8.942338 AACTTTAAGTCATGACGCATCTATTA 57.058 30.769 19.85 8.54 36.20 0.98
4099 5155 7.011482 GGAACTTTAAGTCATGACGCATCTATT 59.989 37.037 19.85 9.50 36.20 1.73
4100 5156 6.480320 GGAACTTTAAGTCATGACGCATCTAT 59.520 38.462 19.85 6.31 36.20 1.98
4101 5157 5.810587 GGAACTTTAAGTCATGACGCATCTA 59.189 40.000 19.85 5.55 36.20 1.98
4102 5158 4.631813 GGAACTTTAAGTCATGACGCATCT 59.368 41.667 19.85 6.46 36.20 2.90
4103 5159 4.391830 TGGAACTTTAAGTCATGACGCATC 59.608 41.667 19.85 11.84 36.20 3.91
4104 5160 4.323417 TGGAACTTTAAGTCATGACGCAT 58.677 39.130 19.85 12.70 36.20 4.73
4105 5161 3.734463 TGGAACTTTAAGTCATGACGCA 58.266 40.909 19.85 9.13 36.20 5.24
4106 5162 4.154195 ACATGGAACTTTAAGTCATGACGC 59.846 41.667 24.21 0.00 35.33 5.19
4107 5163 5.862924 ACATGGAACTTTAAGTCATGACG 57.137 39.130 24.21 8.08 35.33 4.35
4108 5164 6.970484 ACAACATGGAACTTTAAGTCATGAC 58.030 36.000 24.21 18.47 35.33 3.06
4109 5165 8.862325 ATACAACATGGAACTTTAAGTCATGA 57.138 30.769 24.21 9.63 35.33 3.07
4112 5168 9.787435 AGTTATACAACATGGAACTTTAAGTCA 57.213 29.630 0.00 0.00 37.10 3.41
4190 5246 9.573133 AATTGTCTGAAGTCAAACTTTACAAAG 57.427 29.630 14.59 0.13 38.80 2.77
4191 5247 9.567848 GAATTGTCTGAAGTCAAACTTTACAAA 57.432 29.630 14.59 1.94 38.80 2.83
4192 5248 8.956426 AGAATTGTCTGAAGTCAAACTTTACAA 58.044 29.630 13.69 13.69 38.80 2.41
4193 5249 8.506168 AGAATTGTCTGAAGTCAAACTTTACA 57.494 30.769 0.00 0.00 38.80 2.41
4199 5255 9.495754 GCATATAAGAATTGTCTGAAGTCAAAC 57.504 33.333 0.00 0.00 33.05 2.93
4200 5256 9.230122 TGCATATAAGAATTGTCTGAAGTCAAA 57.770 29.630 0.00 0.00 33.05 2.69
4201 5257 8.791327 TGCATATAAGAATTGTCTGAAGTCAA 57.209 30.769 0.00 0.00 33.05 3.18
4202 5258 8.260114 TCTGCATATAAGAATTGTCTGAAGTCA 58.740 33.333 0.00 0.00 33.05 3.41
4203 5259 8.654230 TCTGCATATAAGAATTGTCTGAAGTC 57.346 34.615 0.00 0.00 33.05 3.01
4204 5260 8.263640 ACTCTGCATATAAGAATTGTCTGAAGT 58.736 33.333 0.00 0.00 33.05 3.01
4205 5261 8.659925 ACTCTGCATATAAGAATTGTCTGAAG 57.340 34.615 0.00 0.00 33.05 3.02
4214 5270 9.343539 GGTCCTTTTTACTCTGCATATAAGAAT 57.656 33.333 0.00 0.00 0.00 2.40
4215 5271 7.494625 CGGTCCTTTTTACTCTGCATATAAGAA 59.505 37.037 0.00 0.00 0.00 2.52
4216 5272 6.984474 CGGTCCTTTTTACTCTGCATATAAGA 59.016 38.462 0.00 0.00 0.00 2.10
4217 5273 6.202954 CCGGTCCTTTTTACTCTGCATATAAG 59.797 42.308 0.00 0.00 0.00 1.73
4218 5274 6.053005 CCGGTCCTTTTTACTCTGCATATAA 58.947 40.000 0.00 0.00 0.00 0.98
4219 5275 5.364446 TCCGGTCCTTTTTACTCTGCATATA 59.636 40.000 0.00 0.00 0.00 0.86
4220 5276 4.163458 TCCGGTCCTTTTTACTCTGCATAT 59.837 41.667 0.00 0.00 0.00 1.78
4221 5277 3.516300 TCCGGTCCTTTTTACTCTGCATA 59.484 43.478 0.00 0.00 0.00 3.14
4222 5278 2.304761 TCCGGTCCTTTTTACTCTGCAT 59.695 45.455 0.00 0.00 0.00 3.96
4223 5279 1.695242 TCCGGTCCTTTTTACTCTGCA 59.305 47.619 0.00 0.00 0.00 4.41
4224 5280 2.074576 GTCCGGTCCTTTTTACTCTGC 58.925 52.381 0.00 0.00 0.00 4.26
4225 5281 2.334838 CGTCCGGTCCTTTTTACTCTG 58.665 52.381 0.00 0.00 0.00 3.35
4226 5282 1.274447 CCGTCCGGTCCTTTTTACTCT 59.726 52.381 0.00 0.00 0.00 3.24
4227 5283 1.273327 TCCGTCCGGTCCTTTTTACTC 59.727 52.381 0.00 0.00 36.47 2.59
4228 5284 1.274447 CTCCGTCCGGTCCTTTTTACT 59.726 52.381 0.00 0.00 36.47 2.24
4229 5285 1.001293 ACTCCGTCCGGTCCTTTTTAC 59.999 52.381 0.00 0.00 36.47 2.01
4230 5286 1.341080 ACTCCGTCCGGTCCTTTTTA 58.659 50.000 0.00 0.00 36.47 1.52
4231 5287 1.001293 GTACTCCGTCCGGTCCTTTTT 59.999 52.381 0.00 0.00 36.47 1.94
4232 5288 0.605083 GTACTCCGTCCGGTCCTTTT 59.395 55.000 0.00 0.00 36.47 2.27
4233 5289 0.251519 AGTACTCCGTCCGGTCCTTT 60.252 55.000 0.00 0.00 36.47 3.11
4234 5290 0.620556 TAGTACTCCGTCCGGTCCTT 59.379 55.000 0.00 0.00 36.47 3.36
4235 5291 0.620556 TTAGTACTCCGTCCGGTCCT 59.379 55.000 0.00 0.88 36.47 3.85
4236 5292 1.403323 CTTTAGTACTCCGTCCGGTCC 59.597 57.143 0.00 0.00 36.47 4.46
4237 5293 2.354199 CTCTTTAGTACTCCGTCCGGTC 59.646 54.545 0.00 0.00 36.47 4.79
4238 5294 2.363683 CTCTTTAGTACTCCGTCCGGT 58.636 52.381 0.00 0.00 36.47 5.28
4239 5295 1.674962 CCTCTTTAGTACTCCGTCCGG 59.325 57.143 0.00 0.00 0.00 5.14
4240 5296 1.065251 GCCTCTTTAGTACTCCGTCCG 59.935 57.143 0.00 0.00 0.00 4.79
4241 5297 2.097825 TGCCTCTTTAGTACTCCGTCC 58.902 52.381 0.00 0.00 0.00 4.79
4242 5298 2.477525 CGTGCCTCTTTAGTACTCCGTC 60.478 54.545 0.00 0.00 0.00 4.79
4243 5299 1.471684 CGTGCCTCTTTAGTACTCCGT 59.528 52.381 0.00 0.00 0.00 4.69
4244 5300 1.202268 CCGTGCCTCTTTAGTACTCCG 60.202 57.143 0.00 0.00 0.00 4.63
4245 5301 1.823610 ACCGTGCCTCTTTAGTACTCC 59.176 52.381 0.00 0.00 0.00 3.85
4246 5302 2.490903 TCACCGTGCCTCTTTAGTACTC 59.509 50.000 0.00 0.00 0.00 2.59
4247 5303 2.522185 TCACCGTGCCTCTTTAGTACT 58.478 47.619 0.00 0.00 0.00 2.73
4248 5304 3.308438 TTCACCGTGCCTCTTTAGTAC 57.692 47.619 0.00 0.00 0.00 2.73
4249 5305 4.312443 CTTTTCACCGTGCCTCTTTAGTA 58.688 43.478 0.00 0.00 0.00 1.82
4250 5306 2.922740 TTTCACCGTGCCTCTTTAGT 57.077 45.000 0.00 0.00 0.00 2.24
4251 5307 2.484264 CCTTTTCACCGTGCCTCTTTAG 59.516 50.000 0.00 0.00 0.00 1.85
4252 5308 2.500229 CCTTTTCACCGTGCCTCTTTA 58.500 47.619 0.00 0.00 0.00 1.85
4253 5309 1.318576 CCTTTTCACCGTGCCTCTTT 58.681 50.000 0.00 0.00 0.00 2.52
4254 5310 1.172812 GCCTTTTCACCGTGCCTCTT 61.173 55.000 0.00 0.00 0.00 2.85
4255 5311 1.600916 GCCTTTTCACCGTGCCTCT 60.601 57.895 0.00 0.00 0.00 3.69
4256 5312 1.172812 AAGCCTTTTCACCGTGCCTC 61.173 55.000 0.00 0.00 0.00 4.70
4257 5313 0.109723 TAAGCCTTTTCACCGTGCCT 59.890 50.000 0.00 0.00 0.00 4.75
4258 5314 0.240145 GTAAGCCTTTTCACCGTGCC 59.760 55.000 0.00 0.00 0.00 5.01
4259 5315 0.110373 CGTAAGCCTTTTCACCGTGC 60.110 55.000 0.00 0.00 0.00 5.34
4260 5316 1.504359 TCGTAAGCCTTTTCACCGTG 58.496 50.000 0.00 0.00 37.18 4.94
4261 5317 2.243602 TTCGTAAGCCTTTTCACCGT 57.756 45.000 0.00 0.00 37.18 4.83
4262 5318 3.612472 TTTTCGTAAGCCTTTTCACCG 57.388 42.857 0.00 0.00 37.18 4.94
4284 5340 4.000325 GGCTTTTCACCTTGTGTGTTTTT 59.000 39.130 0.00 0.00 45.61 1.94
4285 5341 3.260632 AGGCTTTTCACCTTGTGTGTTTT 59.739 39.130 0.00 0.00 45.61 2.43
4286 5342 2.831526 AGGCTTTTCACCTTGTGTGTTT 59.168 40.909 0.00 0.00 45.61 2.83
4287 5343 2.456577 AGGCTTTTCACCTTGTGTGTT 58.543 42.857 0.00 0.00 45.61 3.32
4288 5344 2.143876 AGGCTTTTCACCTTGTGTGT 57.856 45.000 0.00 0.00 45.61 3.72
4289 5345 3.525268 AAAGGCTTTTCACCTTGTGTG 57.475 42.857 6.68 0.00 46.96 3.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.