Multiple sequence alignment - TraesCS7A01G114700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G114700 chr7A 100.000 2330 0 0 1 2330 70893195 70895524 0.000000e+00 4303.0
1 TraesCS7A01G114700 chr7A 90.232 604 51 6 154 756 71108422 71109018 0.000000e+00 782.0
2 TraesCS7A01G114700 chr7A 94.336 459 15 6 795 1253 71118523 71118970 0.000000e+00 693.0
3 TraesCS7A01G114700 chr7A 85.755 695 54 24 783 1438 74611013 74610325 0.000000e+00 693.0
4 TraesCS7A01G114700 chr7A 90.987 466 27 10 878 1334 74596603 74596144 4.260000e-172 614.0
5 TraesCS7A01G114700 chr7A 82.335 668 45 26 796 1438 71110047 71110666 1.600000e-141 512.0
6 TraesCS7A01G114700 chr7A 94.697 132 3 2 1478 1609 71110772 71110899 3.930000e-48 202.0
7 TraesCS7A01G114700 chr7A 92.126 127 10 0 1665 1791 74608652 74608526 1.840000e-41 180.0
8 TraesCS7A01G114700 chr7A 88.800 125 13 1 1665 1788 74671207 74671083 4.010000e-33 152.0
9 TraesCS7A01G114700 chr7A 87.200 125 15 1 1665 1788 70780708 70780832 8.680000e-30 141.0
10 TraesCS7A01G114700 chr7B 99.062 533 4 1 1798 2330 544130825 544131356 0.000000e+00 955.0
11 TraesCS7A01G114700 chr7B 90.000 510 49 2 1 509 7723499 7724007 0.000000e+00 658.0
12 TraesCS7A01G114700 chr7B 91.685 445 26 5 973 1413 7727879 7728316 7.120000e-170 606.0
13 TraesCS7A01G114700 chr7B 93.056 360 23 1 969 1328 10241554 10241197 2.050000e-145 525.0
14 TraesCS7A01G114700 chr7B 85.659 258 35 2 1 257 10071584 10071328 1.060000e-68 270.0
15 TraesCS7A01G114700 chr7B 91.139 158 14 0 878 1035 8446086 8446243 5.040000e-52 215.0
16 TraesCS7A01G114700 chr7B 94.215 121 7 0 495 615 7725584 7725704 3.950000e-43 185.0
17 TraesCS7A01G114700 chr7B 79.779 272 33 11 1509 1771 9814883 9814625 6.620000e-41 178.0
18 TraesCS7A01G114700 chr7B 88.889 144 10 4 653 791 7725704 7725846 3.080000e-39 172.0
19 TraesCS7A01G114700 chr7B 90.152 132 7 3 1478 1609 7728403 7728528 1.430000e-37 167.0
20 TraesCS7A01G114700 chr7B 85.294 136 18 2 1666 1800 10584196 10584062 3.120000e-29 139.0
21 TraesCS7A01G114700 chr7B 92.958 71 5 0 783 853 7727650 7727720 1.140000e-18 104.0
22 TraesCS7A01G114700 chr7B 97.727 44 1 0 1373 1416 10241197 10241154 2.480000e-10 76.8
23 TraesCS7A01G114700 chr5B 98.679 530 6 1 1801 2330 11470537 11470009 0.000000e+00 939.0
24 TraesCS7A01G114700 chr5B 98.499 533 7 1 1798 2330 520118341 520118872 0.000000e+00 939.0
25 TraesCS7A01G114700 chr3A 98.311 533 8 1 1798 2330 587597071 587597602 0.000000e+00 933.0
26 TraesCS7A01G114700 chr2B 97.547 530 12 1 1801 2330 790408535 790408007 0.000000e+00 905.0
27 TraesCS7A01G114700 chr2B 95.310 533 23 2 1798 2330 95790037 95790567 0.000000e+00 845.0
28 TraesCS7A01G114700 chr3B 97.186 533 14 1 1798 2330 16325736 16326267 0.000000e+00 900.0
29 TraesCS7A01G114700 chr3B 100.000 29 0 0 802 830 704121496 704121468 1.000000e-03 54.7
30 TraesCS7A01G114700 chr2A 98.812 505 5 1 1826 2330 81476038 81476541 0.000000e+00 898.0
31 TraesCS7A01G114700 chr4D 94.151 530 30 1 1801 2330 58150802 58150274 0.000000e+00 806.0
32 TraesCS7A01G114700 chr7D 88.156 667 48 20 796 1438 66484564 66485223 0.000000e+00 765.0
33 TraesCS7A01G114700 chr7D 95.503 467 13 5 794 1253 68924371 68923906 0.000000e+00 739.0
34 TraesCS7A01G114700 chr7D 87.827 649 48 20 814 1438 68935345 68934704 0.000000e+00 732.0
35 TraesCS7A01G114700 chr7D 84.743 662 40 26 796 1438 66513330 66513949 7.120000e-170 606.0
36 TraesCS7A01G114700 chr7D 91.667 444 27 6 974 1416 68806005 68805571 7.120000e-170 606.0
37 TraesCS7A01G114700 chr7D 90.783 217 11 5 546 756 66484157 66484370 4.900000e-72 281.0
38 TraesCS7A01G114700 chr7D 92.742 124 9 0 1665 1788 66514187 66514310 1.840000e-41 180.0
39 TraesCS7A01G114700 chr1B 85.950 363 24 17 994 1342 678112518 678112867 1.700000e-96 363.0
40 TraesCS7A01G114700 chr1B 90.991 111 10 0 1665 1775 678113154 678113264 1.440000e-32 150.0
41 TraesCS7A01G114700 chr1D 90.991 111 10 0 1665 1775 486923136 486923246 1.440000e-32 150.0
42 TraesCS7A01G114700 chr1D 90.566 106 8 2 1503 1608 486923012 486923115 3.120000e-29 139.0
43 TraesCS7A01G114700 chrUn 86.047 129 15 3 1665 1791 84525188 84525061 4.040000e-28 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G114700 chr7A 70893195 70895524 2329 False 4303.000000 4303 100.0000 1 2330 1 chr7A.!!$F2 2329
1 TraesCS7A01G114700 chr7A 71108422 71110899 2477 False 498.666667 782 89.0880 154 1609 3 chr7A.!!$F4 1455
2 TraesCS7A01G114700 chr7A 74608526 74611013 2487 True 436.500000 693 88.9405 783 1791 2 chr7A.!!$R3 1008
3 TraesCS7A01G114700 chr7B 544130825 544131356 531 False 955.000000 955 99.0620 1798 2330 1 chr7B.!!$F2 532
4 TraesCS7A01G114700 chr7B 7723499 7728528 5029 False 315.333333 658 91.3165 1 1609 6 chr7B.!!$F3 1608
5 TraesCS7A01G114700 chr5B 11470009 11470537 528 True 939.000000 939 98.6790 1801 2330 1 chr5B.!!$R1 529
6 TraesCS7A01G114700 chr5B 520118341 520118872 531 False 939.000000 939 98.4990 1798 2330 1 chr5B.!!$F1 532
7 TraesCS7A01G114700 chr3A 587597071 587597602 531 False 933.000000 933 98.3110 1798 2330 1 chr3A.!!$F1 532
8 TraesCS7A01G114700 chr2B 790408007 790408535 528 True 905.000000 905 97.5470 1801 2330 1 chr2B.!!$R1 529
9 TraesCS7A01G114700 chr2B 95790037 95790567 530 False 845.000000 845 95.3100 1798 2330 1 chr2B.!!$F1 532
10 TraesCS7A01G114700 chr3B 16325736 16326267 531 False 900.000000 900 97.1860 1798 2330 1 chr3B.!!$F1 532
11 TraesCS7A01G114700 chr2A 81476038 81476541 503 False 898.000000 898 98.8120 1826 2330 1 chr2A.!!$F1 504
12 TraesCS7A01G114700 chr4D 58150274 58150802 528 True 806.000000 806 94.1510 1801 2330 1 chr4D.!!$R1 529
13 TraesCS7A01G114700 chr7D 68934704 68935345 641 True 732.000000 732 87.8270 814 1438 1 chr7D.!!$R3 624
14 TraesCS7A01G114700 chr7D 66484157 66485223 1066 False 523.000000 765 89.4695 546 1438 2 chr7D.!!$F1 892
15 TraesCS7A01G114700 chr7D 66513330 66514310 980 False 393.000000 606 88.7425 796 1788 2 chr7D.!!$F2 992
16 TraesCS7A01G114700 chr1B 678112518 678113264 746 False 256.500000 363 88.4705 994 1775 2 chr1B.!!$F1 781

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
568 2160 0.035056 CCCCAGGAAGGCAAGTACTG 60.035 60.0 0.0 0.0 35.39 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1791 7722 0.466543 TACACAAGTTGCCCGACAGT 59.533 50.0 1.81 0.0 0.0 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.465705 CTCGGCCATCCAGAAGCTTA 59.534 55.000 2.24 0.00 0.00 3.09
25 26 2.659428 GCCATCCAGAAGCTTACCATT 58.341 47.619 0.00 0.00 0.00 3.16
34 35 4.154918 CAGAAGCTTACCATTGTGGAAGTC 59.845 45.833 0.00 0.00 40.96 3.01
53 54 3.501040 TTTCGTCCACCTTGGCCCC 62.501 63.158 0.00 0.00 37.47 5.80
120 121 1.859302 ACCAGAGGATGAGTCAGACC 58.141 55.000 10.14 10.14 0.00 3.85
130 131 1.107945 GAGTCAGACCAGGCCTAGAC 58.892 60.000 3.98 9.09 0.00 2.59
131 132 0.681564 AGTCAGACCAGGCCTAGACG 60.682 60.000 3.98 0.00 0.00 4.18
136 137 1.716826 GACCAGGCCTAGACGAGTCG 61.717 65.000 3.98 11.85 34.09 4.18
165 166 2.098770 AGTAGTTCGTTATCGAGGGTGC 59.901 50.000 0.00 0.00 46.81 5.01
230 231 1.524482 GAGTCAGGCCCTCATGTCC 59.476 63.158 0.00 0.00 0.00 4.02
257 258 2.235402 GGTGTTGGAGGAAGTCGGAATA 59.765 50.000 0.00 0.00 0.00 1.75
258 259 3.307199 GGTGTTGGAGGAAGTCGGAATAA 60.307 47.826 0.00 0.00 0.00 1.40
268 269 4.040461 GGAAGTCGGAATAATCCATGGAGA 59.960 45.833 21.33 11.14 46.97 3.71
275 276 5.453903 CGGAATAATCCATGGAGAAGTCTGT 60.454 44.000 21.33 0.00 46.97 3.41
302 303 4.583871 GAGGAAATCAGACTCAACCATGT 58.416 43.478 0.00 0.00 0.00 3.21
307 308 4.744795 ATCAGACTCAACCATGTAGGAC 57.255 45.455 0.00 0.00 41.22 3.85
325 326 3.205507 AGGACTCTGCCATCTAGGAAGTA 59.794 47.826 0.00 0.00 44.42 2.24
335 336 4.547532 CATCTAGGAAGTATTTCGTCCGG 58.452 47.826 0.00 0.00 46.66 5.14
364 365 2.270275 TTTGTTGTTTGCCTCACACG 57.730 45.000 0.00 0.00 0.00 4.49
367 368 1.750780 TTGTTTGCCTCACACGCCA 60.751 52.632 0.00 0.00 0.00 5.69
378 379 0.670546 CACACGCCAACGATCCTCTT 60.671 55.000 0.00 0.00 43.93 2.85
400 401 0.234625 GCGTTGTTTGATGTCTGCGA 59.765 50.000 0.00 0.00 0.00 5.10
402 403 2.093625 GCGTTGTTTGATGTCTGCGATA 59.906 45.455 0.00 0.00 0.00 2.92
449 451 3.510388 TCCACGTTTCAAATTTGCACA 57.490 38.095 13.54 0.00 0.00 4.57
450 452 3.849911 TCCACGTTTCAAATTTGCACAA 58.150 36.364 13.54 3.55 0.00 3.33
461 463 5.749588 TCAAATTTGCACAAACATGAGACAG 59.250 36.000 13.54 0.00 32.51 3.51
479 481 0.613777 AGGAGTAAACGGCCCAAGAG 59.386 55.000 0.00 0.00 0.00 2.85
526 2118 6.108687 TGAAATTGATAAGATCAGACTGCGT 58.891 36.000 0.00 0.00 40.94 5.24
568 2160 0.035056 CCCCAGGAAGGCAAGTACTG 60.035 60.000 0.00 0.00 35.39 2.74
638 2236 9.507329 GAACATATACATGATTGGTGGACTTAT 57.493 33.333 0.00 0.00 35.96 1.73
679 2277 6.529829 GTGAAACAACATGCAAGACTTTGTTA 59.470 34.615 8.86 0.00 39.00 2.41
702 2300 1.550409 GGGACCGGGAGAGTGCTATAT 60.550 57.143 6.32 0.00 0.00 0.86
752 2350 9.271828 GGTAATTGTTTGATTTGATTTCCAGTT 57.728 29.630 0.00 0.00 0.00 3.16
760 2363 0.035439 TGATTTCCAGTTCGAGGCCC 60.035 55.000 0.00 0.00 0.00 5.80
812 5129 2.046314 CGGCCATTTCGACTGGGT 60.046 61.111 13.63 0.00 34.16 4.51
839 5156 1.226603 CCGGCTCCGACTCGTTAAG 60.227 63.158 10.28 0.00 42.83 1.85
855 5172 3.749981 AGGGCTTCGTTGCACTTG 58.250 55.556 1.63 0.00 45.56 3.16
856 5173 2.050077 GGGCTTCGTTGCACTTGC 60.050 61.111 0.00 0.00 42.50 4.01
868 5189 4.497984 ACTTGCACCGCCACACCA 62.498 61.111 0.00 0.00 0.00 4.17
874 5195 4.947147 ACCGCCACACCACGCAAT 62.947 61.111 0.00 0.00 0.00 3.56
875 5196 4.403137 CCGCCACACCACGCAATG 62.403 66.667 0.00 0.00 0.00 2.82
884 5212 2.108514 CCACGCAATGCAGTCGGAT 61.109 57.895 5.91 0.00 0.00 4.18
885 5213 1.349627 CACGCAATGCAGTCGGATC 59.650 57.895 5.91 0.00 0.00 3.36
886 5214 1.079197 ACGCAATGCAGTCGGATCA 60.079 52.632 5.91 0.00 0.00 2.92
913 5249 5.242838 CAGAACCTTTATAAGCACACCCAAA 59.757 40.000 0.00 0.00 0.00 3.28
914 5250 5.476945 AGAACCTTTATAAGCACACCCAAAG 59.523 40.000 0.00 0.00 0.00 2.77
937 5274 2.038863 TCCCTACCAACACACATCCT 57.961 50.000 0.00 0.00 0.00 3.24
938 5275 2.344592 TCCCTACCAACACACATCCTT 58.655 47.619 0.00 0.00 0.00 3.36
940 5277 2.819608 CCCTACCAACACACATCCTTTG 59.180 50.000 0.00 0.00 0.00 2.77
941 5278 2.819608 CCTACCAACACACATCCTTTGG 59.180 50.000 0.00 0.00 43.61 3.28
942 5279 2.452600 ACCAACACACATCCTTTGGT 57.547 45.000 0.00 0.00 45.59 3.67
943 5280 2.798976 CCAACACACATCCTTTGGTG 57.201 50.000 0.00 0.00 40.78 4.17
944 5281 2.305928 CCAACACACATCCTTTGGTGA 58.694 47.619 0.00 0.00 38.38 4.02
953 5317 1.522668 TCCTTTGGTGATCGCAAGTG 58.477 50.000 8.82 0.00 39.48 3.16
1357 5785 3.436704 TGATCGAGTTTGCTTTCATGGAC 59.563 43.478 0.00 0.00 0.00 4.02
1431 5861 6.316140 TGTCTCTCGAAATTGTATTGATTGGG 59.684 38.462 0.00 0.00 0.00 4.12
1434 5864 4.277476 TCGAAATTGTATTGATTGGGCCT 58.723 39.130 4.53 0.00 0.00 5.19
1435 5865 4.097741 TCGAAATTGTATTGATTGGGCCTG 59.902 41.667 4.53 0.00 0.00 4.85
1436 5866 4.142182 CGAAATTGTATTGATTGGGCCTGT 60.142 41.667 4.53 0.00 0.00 4.00
1437 5867 5.067153 CGAAATTGTATTGATTGGGCCTGTA 59.933 40.000 4.53 0.00 0.00 2.74
1438 5868 6.239008 CGAAATTGTATTGATTGGGCCTGTAT 60.239 38.462 4.53 0.00 0.00 2.29
1439 5869 7.436320 AAATTGTATTGATTGGGCCTGTATT 57.564 32.000 4.53 0.00 0.00 1.89
1440 5870 5.850557 TTGTATTGATTGGGCCTGTATTG 57.149 39.130 4.53 0.00 0.00 1.90
1441 5871 4.865905 TGTATTGATTGGGCCTGTATTGT 58.134 39.130 4.53 0.00 0.00 2.71
1442 5872 5.268387 TGTATTGATTGGGCCTGTATTGTT 58.732 37.500 4.53 0.00 0.00 2.83
1443 5873 4.741321 ATTGATTGGGCCTGTATTGTTG 57.259 40.909 4.53 0.00 0.00 3.33
1455 5989 1.732259 GTATTGTTGGAGCCTGTGACG 59.268 52.381 0.00 0.00 0.00 4.35
1504 6038 1.901591 TCGACCGACAAGAGTACCTT 58.098 50.000 0.00 0.00 34.91 3.50
1604 7361 1.953559 AAGACGCTCTGCAAGTTCAA 58.046 45.000 0.00 0.00 33.76 2.69
1605 7362 1.506493 AGACGCTCTGCAAGTTCAAG 58.494 50.000 0.00 0.00 33.76 3.02
1606 7363 1.069204 AGACGCTCTGCAAGTTCAAGA 59.931 47.619 0.00 0.00 33.76 3.02
1607 7364 1.867233 GACGCTCTGCAAGTTCAAGAA 59.133 47.619 0.00 0.00 33.76 2.52
1608 7365 1.599542 ACGCTCTGCAAGTTCAAGAAC 59.400 47.619 4.82 4.82 41.45 3.01
1609 7366 1.599071 CGCTCTGCAAGTTCAAGAACA 59.401 47.619 14.69 0.00 43.47 3.18
1610 7367 2.032054 CGCTCTGCAAGTTCAAGAACAA 59.968 45.455 14.69 0.00 43.47 2.83
1611 7368 3.487376 CGCTCTGCAAGTTCAAGAACAAA 60.487 43.478 14.69 0.00 43.47 2.83
1612 7369 4.423732 GCTCTGCAAGTTCAAGAACAAAA 58.576 39.130 14.69 0.00 43.47 2.44
1613 7370 4.864247 GCTCTGCAAGTTCAAGAACAAAAA 59.136 37.500 14.69 0.00 43.47 1.94
1669 7600 4.184629 GTGCAGTAGATTGAATCGGTTCT 58.815 43.478 10.29 0.00 35.33 3.01
1679 7610 2.003301 GAATCGGTTCTTCCTGTCAGC 58.997 52.381 0.00 0.00 0.00 4.26
1681 7612 0.976641 TCGGTTCTTCCTGTCAGCAT 59.023 50.000 0.00 0.00 0.00 3.79
1685 7616 4.404394 TCGGTTCTTCCTGTCAGCATAATA 59.596 41.667 0.00 0.00 0.00 0.98
1714 7645 3.969287 TCAGCTAGCAGAATCACAAGT 57.031 42.857 18.83 0.00 0.00 3.16
1716 7647 2.095532 CAGCTAGCAGAATCACAAGTGC 59.904 50.000 18.83 0.00 36.10 4.40
1788 7719 1.623311 TCATGTCATTGTGTCCGAGGT 59.377 47.619 0.00 0.00 0.00 3.85
2046 7978 2.423538 GGCTGCTTTGTTATGGTCGATT 59.576 45.455 0.00 0.00 0.00 3.34
2076 8008 6.628185 AGCAAGAAATAAATCCTGCTTTCAG 58.372 36.000 0.00 0.00 42.92 3.02
2305 8237 5.923114 TGCAGCATTTACGATTATCTCTCTC 59.077 40.000 0.00 0.00 0.00 3.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 4.074970 ACTTCCACAATGGTAAGCTTCTG 58.925 43.478 0.00 0.00 39.03 3.02
20 21 3.139077 GACGAAAGACTTCCACAATGGT 58.861 45.455 0.00 0.00 39.03 3.55
34 35 3.668386 GGCCAAGGTGGACGAAAG 58.332 61.111 0.00 0.00 40.96 2.62
43 44 1.064979 CGTTACTTATGGGGCCAAGGT 60.065 52.381 4.39 0.00 0.00 3.50
120 121 1.313812 AACCGACTCGTCTAGGCCTG 61.314 60.000 17.99 5.60 0.00 4.85
130 131 0.795085 ACTACTCGACAACCGACTCG 59.205 55.000 0.00 0.00 43.23 4.18
131 132 2.849110 GAACTACTCGACAACCGACTC 58.151 52.381 0.00 0.00 43.23 3.36
159 160 3.989698 CTTCATCGCGTCGCACCCT 62.990 63.158 18.75 0.00 0.00 4.34
165 166 1.134530 GACTCCACTTCATCGCGTCG 61.135 60.000 5.77 0.00 0.00 5.12
230 231 1.271379 ACTTCCTCCAACACCCAATCG 60.271 52.381 0.00 0.00 0.00 3.34
257 258 4.442612 CGATGACAGACTTCTCCATGGATT 60.443 45.833 16.63 0.00 0.00 3.01
258 259 3.069300 CGATGACAGACTTCTCCATGGAT 59.931 47.826 16.63 0.00 0.00 3.41
268 269 4.464244 TCTGATTTCCTCGATGACAGACTT 59.536 41.667 5.70 0.00 0.00 3.01
275 276 4.382040 GGTTGAGTCTGATTTCCTCGATGA 60.382 45.833 0.00 0.00 0.00 2.92
302 303 3.205507 ACTTCCTAGATGGCAGAGTCCTA 59.794 47.826 0.00 0.00 33.17 2.94
307 308 5.221342 ACGAAATACTTCCTAGATGGCAGAG 60.221 44.000 0.00 0.00 33.17 3.35
325 326 4.482952 AAAGGATTCTACCGGACGAAAT 57.517 40.909 9.46 1.74 34.73 2.17
335 336 5.842907 AGGCAAACAACAAAAGGATTCTAC 58.157 37.500 0.00 0.00 0.00 2.59
364 365 1.424493 CGCTGAAGAGGATCGTTGGC 61.424 60.000 0.00 0.00 42.67 4.52
367 368 1.000955 ACAACGCTGAAGAGGATCGTT 59.999 47.619 0.00 0.00 43.03 3.85
378 379 1.264020 GCAGACATCAAACAACGCTGA 59.736 47.619 0.00 0.00 0.00 4.26
400 401 4.196971 GTGGGACTCTTTATTTGCGGTAT 58.803 43.478 0.00 0.00 0.00 2.73
402 403 2.433436 GTGGGACTCTTTATTTGCGGT 58.567 47.619 0.00 0.00 0.00 5.68
434 436 6.901357 GTCTCATGTTTGTGCAAATTTGAAAC 59.099 34.615 22.31 20.59 32.36 2.78
449 451 4.315803 CCGTTTACTCCTGTCTCATGTTT 58.684 43.478 0.00 0.00 0.00 2.83
450 452 3.864921 GCCGTTTACTCCTGTCTCATGTT 60.865 47.826 0.00 0.00 0.00 2.71
461 463 0.323957 ACTCTTGGGCCGTTTACTCC 59.676 55.000 0.00 0.00 0.00 3.85
526 2118 2.046700 GTGCGATTTCCCCGTCCA 60.047 61.111 0.00 0.00 0.00 4.02
568 2160 9.219603 TGTAATTACTCTTATAATGGATGCTGC 57.780 33.333 16.33 0.00 0.00 5.25
638 2236 9.061435 TGTTGTTTCACATCTATCAACACAATA 57.939 29.630 0.00 0.00 39.65 1.90
671 2269 1.706305 TCCCGGTCCCAATAACAAAGT 59.294 47.619 0.00 0.00 0.00 2.66
679 2277 2.670148 GCACTCTCCCGGTCCCAAT 61.670 63.158 0.00 0.00 0.00 3.16
702 2300 1.305201 GCGTCCTCAAGGTTCACAAA 58.695 50.000 0.00 0.00 36.34 2.83
839 5156 2.050077 GCAAGTGCAACGAAGCCC 60.050 61.111 0.00 0.00 45.86 5.19
857 5174 4.947147 ATTGCGTGGTGTGGCGGT 62.947 61.111 0.00 0.00 0.00 5.68
858 5175 4.403137 CATTGCGTGGTGTGGCGG 62.403 66.667 0.00 0.00 0.00 6.13
868 5189 1.079197 TGATCCGACTGCATTGCGT 60.079 52.632 3.84 5.05 0.00 5.24
870 5191 2.020131 CCTGATCCGACTGCATTGC 58.980 57.895 0.46 0.46 0.00 3.56
874 5195 1.543944 TTCTGCCTGATCCGACTGCA 61.544 55.000 0.00 0.00 0.00 4.41
875 5196 1.086634 GTTCTGCCTGATCCGACTGC 61.087 60.000 0.00 0.00 0.00 4.40
876 5197 0.460987 GGTTCTGCCTGATCCGACTG 60.461 60.000 0.00 0.00 0.00 3.51
913 5249 1.493022 TGTGTGTTGGTAGGGAAAGCT 59.507 47.619 0.00 0.00 0.00 3.74
914 5250 1.975660 TGTGTGTTGGTAGGGAAAGC 58.024 50.000 0.00 0.00 0.00 3.51
937 5274 0.950836 CACCACTTGCGATCACCAAA 59.049 50.000 0.00 0.00 0.00 3.28
938 5275 1.514678 GCACCACTTGCGATCACCAA 61.515 55.000 0.00 0.00 42.79 3.67
940 5277 2.870372 GCACCACTTGCGATCACC 59.130 61.111 0.00 0.00 42.79 4.02
953 5317 1.973812 GGGTTCTTCTGGCAGCACC 60.974 63.158 10.34 12.37 39.84 5.01
959 5323 1.973812 GCAGGTGGGTTCTTCTGGC 60.974 63.158 0.00 0.00 0.00 4.85
962 5326 0.250513 GATCGCAGGTGGGTTCTTCT 59.749 55.000 0.00 0.00 0.00 2.85
963 5327 0.250513 AGATCGCAGGTGGGTTCTTC 59.749 55.000 2.61 0.00 34.64 2.87
964 5328 0.036010 CAGATCGCAGGTGGGTTCTT 60.036 55.000 5.19 0.00 35.65 2.52
1357 5785 3.629058 AGATTGACGTTGTATCGATCGG 58.371 45.455 16.41 0.00 40.57 4.18
1431 5861 1.098050 CAGGCTCCAACAATACAGGC 58.902 55.000 0.00 0.00 0.00 4.85
1434 5864 2.778299 GTCACAGGCTCCAACAATACA 58.222 47.619 0.00 0.00 0.00 2.29
1435 5865 1.732259 CGTCACAGGCTCCAACAATAC 59.268 52.381 0.00 0.00 0.00 1.89
1436 5866 1.338674 CCGTCACAGGCTCCAACAATA 60.339 52.381 0.00 0.00 0.00 1.90
1437 5867 0.606401 CCGTCACAGGCTCCAACAAT 60.606 55.000 0.00 0.00 0.00 2.71
1438 5868 1.227823 CCGTCACAGGCTCCAACAA 60.228 57.895 0.00 0.00 0.00 2.83
1439 5869 2.425592 CCGTCACAGGCTCCAACA 59.574 61.111 0.00 0.00 0.00 3.33
1440 5870 2.358737 CCCGTCACAGGCTCCAAC 60.359 66.667 0.00 0.00 0.00 3.77
1441 5871 1.990160 AAACCCGTCACAGGCTCCAA 61.990 55.000 0.00 0.00 0.00 3.53
1442 5872 2.391724 GAAACCCGTCACAGGCTCCA 62.392 60.000 0.00 0.00 0.00 3.86
1443 5873 1.671379 GAAACCCGTCACAGGCTCC 60.671 63.158 0.00 0.00 0.00 4.70
1455 5989 2.291365 ACCACTACAACAACGAAACCC 58.709 47.619 0.00 0.00 0.00 4.11
1494 6028 5.803237 TTCGAAAAGGAGAAGGTACTCTT 57.197 39.130 0.00 0.00 38.49 2.85
1613 7370 9.659830 GTTACATTTCTACAGACGACAATTTTT 57.340 29.630 0.00 0.00 0.00 1.94
1614 7371 8.287503 GGTTACATTTCTACAGACGACAATTTT 58.712 33.333 0.00 0.00 0.00 1.82
1615 7372 7.442969 TGGTTACATTTCTACAGACGACAATTT 59.557 33.333 0.00 0.00 0.00 1.82
1616 7373 6.932400 TGGTTACATTTCTACAGACGACAATT 59.068 34.615 0.00 0.00 0.00 2.32
1617 7374 6.367969 GTGGTTACATTTCTACAGACGACAAT 59.632 38.462 0.00 0.00 0.00 2.71
1618 7375 5.693104 GTGGTTACATTTCTACAGACGACAA 59.307 40.000 0.00 0.00 0.00 3.18
1619 7376 5.221283 TGTGGTTACATTTCTACAGACGACA 60.221 40.000 0.00 0.00 0.00 4.35
1620 7377 5.224888 TGTGGTTACATTTCTACAGACGAC 58.775 41.667 0.00 0.00 0.00 4.34
1621 7378 5.456548 TGTGGTTACATTTCTACAGACGA 57.543 39.130 0.00 0.00 0.00 4.20
1622 7379 5.120208 CCTTGTGGTTACATTTCTACAGACG 59.880 44.000 0.00 0.00 36.53 4.18
1623 7380 5.411669 CCCTTGTGGTTACATTTCTACAGAC 59.588 44.000 0.00 0.00 36.53 3.51
1624 7381 5.556915 CCCTTGTGGTTACATTTCTACAGA 58.443 41.667 0.00 0.00 36.53 3.41
1625 7382 5.880054 CCCTTGTGGTTACATTTCTACAG 57.120 43.478 0.00 0.00 36.53 2.74
1650 7407 5.521735 CAGGAAGAACCGATTCAATCTACTG 59.478 44.000 0.00 0.00 44.74 2.74
1653 7410 5.186992 TGACAGGAAGAACCGATTCAATCTA 59.813 40.000 0.00 0.00 44.74 1.98
1685 7616 7.094075 TGTGATTCTGCTAGCTGAAATTGATTT 60.094 33.333 32.32 18.84 37.42 2.17
1714 7645 0.480690 TTAGGAAAACCCCAGCAGCA 59.519 50.000 0.00 0.00 34.66 4.41
1762 7693 3.000623 CGGACACAATGACATGAGATTCG 59.999 47.826 0.00 0.00 0.00 3.34
1788 7719 1.227823 CAAGTTGCCCGACAGTCCA 60.228 57.895 0.00 0.00 0.00 4.02
1791 7722 0.466543 TACACAAGTTGCCCGACAGT 59.533 50.000 1.81 0.00 0.00 3.55
1792 7723 1.588674 TTACACAAGTTGCCCGACAG 58.411 50.000 1.81 0.00 0.00 3.51
1793 7724 2.039818 TTTACACAAGTTGCCCGACA 57.960 45.000 1.81 0.00 0.00 4.35
1794 7725 3.423996 TTTTTACACAAGTTGCCCGAC 57.576 42.857 1.81 0.00 0.00 4.79
2046 7978 6.165577 GCAGGATTTATTTCTTGCTTTCCAA 58.834 36.000 1.80 0.00 43.28 3.53
2076 8008 6.265876 CAGTAGGATCCCTAGGTAAAGAACTC 59.734 46.154 8.55 0.00 36.71 3.01
2305 8237 5.882557 ACAGGGTGCTATATCAAAAGAACAG 59.117 40.000 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.