Multiple sequence alignment - TraesCS7A01G114600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G114600 chr7A 100.000 3599 0 0 1 3599 70890863 70887265 0.000000e+00 6647.0
1 TraesCS7A01G114600 chr7A 93.554 1117 29 14 1622 2703 74643203 74644311 0.000000e+00 1624.0
2 TraesCS7A01G114600 chr7A 91.638 873 33 14 728 1595 74642368 74643205 0.000000e+00 1171.0
3 TraesCS7A01G114600 chr7A 98.494 332 4 1 3262 3593 74644924 74645254 5.180000e-163 584.0
4 TraesCS7A01G114600 chr7A 87.830 493 30 11 215 704 74641389 74641854 5.250000e-153 551.0
5 TraesCS7A01G114600 chr7A 93.769 321 20 0 2883 3203 74644492 74644812 1.940000e-132 483.0
6 TraesCS7A01G114600 chr7A 79.943 703 102 18 968 1665 70898534 70897866 6.990000e-132 481.0
7 TraesCS7A01G114600 chr7A 75.372 873 133 49 818 1665 70238202 70237387 2.660000e-91 346.0
8 TraesCS7A01G114600 chr7A 94.064 219 12 1 1 219 74615285 74615502 7.450000e-87 331.0
9 TraesCS7A01G114600 chr7A 75.401 748 128 39 838 1583 70767385 70766692 9.700000e-81 311.0
10 TraesCS7A01G114600 chr7A 75.207 605 105 36 914 1511 77915149 77915715 9.980000e-61 244.0
11 TraesCS7A01G114600 chr7A 92.258 155 6 2 2554 2702 71112899 71112745 7.830000e-52 215.0
12 TraesCS7A01G114600 chr7A 87.931 174 16 4 2485 2654 74885306 74885478 2.190000e-47 200.0
13 TraesCS7A01G114600 chr7A 92.373 118 9 0 2702 2819 74644346 74644463 6.180000e-38 169.0
14 TraesCS7A01G114600 chr7A 94.915 59 3 0 2705 2763 71112706 71112648 3.830000e-15 93.5
15 TraesCS7A01G114600 chr7A 90.476 42 3 1 2356 2397 123935026 123934986 2.000000e-03 54.7
16 TraesCS7A01G114600 chr7D 92.791 1609 74 24 1 1606 68982624 68984193 0.000000e+00 2290.0
17 TraesCS7A01G114600 chr7D 91.522 1557 51 15 706 2204 66416751 66415218 0.000000e+00 2069.0
18 TraesCS7A01G114600 chr7D 92.119 571 24 11 2702 3255 68985151 68985717 0.000000e+00 785.0
19 TraesCS7A01G114600 chr7D 97.113 381 11 0 1651 2031 68984191 68984571 0.000000e+00 643.0
20 TraesCS7A01G114600 chr7D 78.151 1071 146 48 968 2030 66508482 66507492 5.140000e-168 601.0
21 TraesCS7A01G114600 chr7D 93.703 397 17 5 2121 2517 66415010 66414622 4.000000e-164 588.0
22 TraesCS7A01G114600 chr7D 84.434 424 24 16 2701 3100 66413042 66412637 2.620000e-101 379.0
23 TraesCS7A01G114600 chr7D 92.574 202 9 2 2508 2703 66413278 66413077 5.880000e-73 285.0
24 TraesCS7A01G114600 chr7D 82.663 323 48 4 1712 2030 69056086 69056404 2.740000e-71 279.0
25 TraesCS7A01G114600 chr7D 75.537 605 103 36 914 1511 73367902 73368468 4.610000e-64 255.0
26 TraesCS7A01G114600 chr7D 96.732 153 2 1 3262 3411 68985779 68985931 5.970000e-63 252.0
27 TraesCS7A01G114600 chr7D 87.225 227 12 5 2554 2763 66506860 66506634 3.590000e-60 243.0
28 TraesCS7A01G114600 chr7D 74.256 672 112 39 1000 1663 65814559 65813941 3.620000e-55 226.0
29 TraesCS7A01G114600 chr7D 87.097 186 18 5 2485 2665 69057067 69057251 4.710000e-49 206.0
30 TraesCS7A01G114600 chr7D 90.506 158 10 1 2551 2703 68930308 68930465 1.690000e-48 204.0
31 TraesCS7A01G114600 chr7D 77.879 330 42 16 1436 1750 66547631 66547318 3.690000e-40 176.0
32 TraesCS7A01G114600 chr7D 80.889 225 17 8 1536 1749 68898062 68898271 1.730000e-33 154.0
33 TraesCS7A01G114600 chr7D 93.220 59 3 1 2706 2763 68930556 68930614 6.400000e-13 86.1
34 TraesCS7A01G114600 chr7D 82.569 109 7 8 2394 2490 68984844 68984952 6.400000e-13 86.1
35 TraesCS7A01G114600 chr7D 77.143 140 18 8 2058 2188 68984618 68984752 6.450000e-08 69.4
36 TraesCS7A01G114600 chr7B 87.436 1751 88 55 504 2192 10558582 10560262 0.000000e+00 1893.0
37 TraesCS7A01G114600 chr7B 89.701 1505 78 24 728 2192 7717847 7716380 0.000000e+00 1849.0
38 TraesCS7A01G114600 chr7B 89.250 800 35 22 2441 3223 10560552 10561317 0.000000e+00 953.0
39 TraesCS7A01G114600 chr7B 95.802 262 10 1 3262 3523 139854951 139854691 4.300000e-114 422.0
40 TraesCS7A01G114600 chr7B 85.124 363 19 11 2701 3029 7715785 7715424 4.450000e-89 339.0
41 TraesCS7A01G114600 chr7B 90.000 270 13 2 2435 2703 7716076 7715820 1.600000e-88 337.0
42 TraesCS7A01G114600 chr7B 82.019 317 49 7 1695 2010 10238266 10238575 2.760000e-66 263.0
43 TraesCS7A01G114600 chr7B 96.000 150 6 0 2554 2703 7730560 7730411 9.980000e-61 244.0
44 TraesCS7A01G114600 chr7B 80.656 305 41 9 1428 1730 10061409 10061697 1.680000e-53 220.0
45 TraesCS7A01G114600 chr7B 75.918 490 83 19 1000 1485 491084216 491083758 6.050000e-53 219.0
46 TraesCS7A01G114600 chr7B 74.955 555 97 30 835 1378 17507570 17508093 2.180000e-52 217.0
47 TraesCS7A01G114600 chr7B 94.161 137 5 3 3121 3255 139855166 139855031 4.710000e-49 206.0
48 TraesCS7A01G114600 chr7B 79.443 287 32 9 1456 1730 8448151 8447880 1.030000e-40 178.0
49 TraesCS7A01G114600 chr7B 90.435 115 7 3 500 611 7718150 7718037 8.050000e-32 148.0
50 TraesCS7A01G114600 chr7B 88.776 98 7 1 838 935 10916482 10916575 2.270000e-22 117.0
51 TraesCS7A01G114600 chr7B 94.667 75 3 1 2333 2407 7716144 7716071 8.170000e-22 115.0
52 TraesCS7A01G114600 chr7B 90.476 63 5 1 2701 2763 7730376 7730315 8.280000e-12 82.4
53 TraesCS7A01G114600 chr7B 97.436 39 1 0 3518 3556 10562525 10562487 2.320000e-07 67.6
54 TraesCS7A01G114600 chr7B 96.970 33 0 1 3529 3560 72751770 72751802 2.000000e-03 54.7
55 TraesCS7A01G114600 chr2B 77.873 818 117 28 791 1568 135794716 135795509 1.970000e-122 449.0
56 TraesCS7A01G114600 chr2B 80.615 325 53 8 1708 2030 135795661 135795977 3.590000e-60 243.0
57 TraesCS7A01G114600 chr2B 100.000 28 0 0 3529 3556 238953259 238953286 6.000000e-03 52.8
58 TraesCS7A01G114600 chr2A 80.342 351 55 8 1686 2030 84749785 84750127 1.660000e-63 254.0
59 TraesCS7A01G114600 chr2A 89.583 48 2 3 2352 2397 84750415 84750461 1.400000e-04 58.4
60 TraesCS7A01G114600 chrUn 79.221 231 36 8 1437 1665 84529313 84529533 2.240000e-32 150.0
61 TraesCS7A01G114600 chr2D 74.372 398 67 18 911 1278 33374211 33373819 1.740000e-28 137.0
62 TraesCS7A01G114600 chr2D 100.000 50 0 0 3529 3578 593363468 593363517 3.830000e-15 93.5
63 TraesCS7A01G114600 chr6D 90.698 43 3 1 2355 2397 56139765 56139724 5.020000e-04 56.5
64 TraesCS7A01G114600 chr3D 80.247 81 11 3 2317 2397 497741368 497741443 5.020000e-04 56.5
65 TraesCS7A01G114600 chr4A 87.755 49 3 2 2351 2397 223318196 223318243 2.000000e-03 54.7
66 TraesCS7A01G114600 chr4A 90.476 42 3 1 2356 2397 528522290 528522250 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G114600 chr7A 70887265 70890863 3598 True 6647.000000 6647 100.00000 1 3599 1 chr7A.!!$R3 3598
1 TraesCS7A01G114600 chr7A 74641389 74645254 3865 False 763.666667 1624 92.94300 215 3593 6 chr7A.!!$F4 3378
2 TraesCS7A01G114600 chr7A 70897866 70898534 668 True 481.000000 481 79.94300 968 1665 1 chr7A.!!$R4 697
3 TraesCS7A01G114600 chr7A 70237387 70238202 815 True 346.000000 346 75.37200 818 1665 1 chr7A.!!$R1 847
4 TraesCS7A01G114600 chr7A 70766692 70767385 693 True 311.000000 311 75.40100 838 1583 1 chr7A.!!$R2 745
5 TraesCS7A01G114600 chr7A 77915149 77915715 566 False 244.000000 244 75.20700 914 1511 1 chr7A.!!$F3 597
6 TraesCS7A01G114600 chr7D 66412637 66416751 4114 True 830.250000 2069 90.55825 706 3100 4 chr7D.!!$R3 2394
7 TraesCS7A01G114600 chr7D 68982624 68985931 3307 False 687.583333 2290 89.74450 1 3411 6 chr7D.!!$F4 3410
8 TraesCS7A01G114600 chr7D 66506634 66508482 1848 True 422.000000 601 82.68800 968 2763 2 chr7D.!!$R4 1795
9 TraesCS7A01G114600 chr7D 73367902 73368468 566 False 255.000000 255 75.53700 914 1511 1 chr7D.!!$F2 597
10 TraesCS7A01G114600 chr7D 69056086 69057251 1165 False 242.500000 279 84.88000 1712 2665 2 chr7D.!!$F5 953
11 TraesCS7A01G114600 chr7D 65813941 65814559 618 True 226.000000 226 74.25600 1000 1663 1 chr7D.!!$R1 663
12 TraesCS7A01G114600 chr7B 10558582 10561317 2735 False 1423.000000 1893 88.34300 504 3223 2 chr7B.!!$F6 2719
13 TraesCS7A01G114600 chr7B 7715424 7718150 2726 True 557.600000 1849 89.98540 500 3029 5 chr7B.!!$R4 2529
14 TraesCS7A01G114600 chr7B 17507570 17508093 523 False 217.000000 217 74.95500 835 1378 1 chr7B.!!$F4 543
15 TraesCS7A01G114600 chr2B 135794716 135795977 1261 False 346.000000 449 79.24400 791 2030 2 chr2B.!!$F2 1239

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
441 443 0.182775 GGTCCCCCTCGCAATACAAT 59.817 55.0 0.0 0.00 0.0 2.71 F
1597 2312 0.234884 CGCGACTTGGGTTCTTGAAC 59.765 55.0 0.0 5.03 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2099 2882 2.023673 CTGTTTTCCAACACTGAGGCA 58.976 47.619 0.00 0.0 38.03 4.75 R
3257 6418 1.604278 GCCAAGAATTATGGAGTCGGC 59.396 52.381 12.76 0.0 40.56 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.191128 GGAAGAAGACCATGTGTGCT 57.809 50.000 0.00 0.00 0.00 4.40
52 53 9.671279 TGAAACATGAGTACAAGACATCATATT 57.329 29.630 0.00 0.00 31.35 1.28
78 79 1.819632 GGCACCACCATCGACATCC 60.820 63.158 0.00 0.00 38.86 3.51
100 101 7.108841 TCCTAAAACTACGATGAGTAAGCAT 57.891 36.000 0.00 0.00 34.45 3.79
116 117 6.186957 AGTAAGCATCATTAACCATCCAACA 58.813 36.000 0.00 0.00 0.00 3.33
143 144 3.146618 AGTCGTTAATCTACTGCACCG 57.853 47.619 0.00 0.00 0.00 4.94
144 145 2.159282 AGTCGTTAATCTACTGCACCGG 60.159 50.000 0.00 0.00 0.00 5.28
148 149 3.306166 CGTTAATCTACTGCACCGGAAAG 59.694 47.826 9.46 4.67 0.00 2.62
236 237 2.573869 CTCACGCCACGAGGACAT 59.426 61.111 1.86 0.00 36.89 3.06
339 341 6.593382 GCTCCATATTCAGAATAGTCATGGAC 59.407 42.308 16.76 12.00 29.96 4.02
388 390 4.927049 ACATGAGGTGGTGATCAATTTCT 58.073 39.130 0.00 0.00 0.00 2.52
392 394 3.350833 AGGTGGTGATCAATTTCTCTGC 58.649 45.455 0.00 0.00 0.00 4.26
434 436 2.295602 GGTTAAGGTCCCCCTCGCA 61.296 63.158 0.00 0.00 41.56 5.10
441 443 0.182775 GGTCCCCCTCGCAATACAAT 59.817 55.000 0.00 0.00 0.00 2.71
475 477 3.181507 GCTTTGATGCGCATGAAACTAGA 60.182 43.478 30.76 9.28 0.00 2.43
570 574 5.779529 ATTGAGCACAGAAAAACATGACT 57.220 34.783 0.00 0.00 0.00 3.41
699 720 5.766222 AGCTGAGAAACATAGCAGTTTTTG 58.234 37.500 0.00 0.00 41.48 2.44
704 725 8.183830 TGAGAAACATAGCAGTTTTTGTTTTG 57.816 30.769 0.00 0.00 41.10 2.44
745 1256 2.166829 ACAGCAGTTTGTTGTGGACAA 58.833 42.857 0.00 0.00 46.19 3.18
887 1425 2.906897 CCGCCACAACCAACAGCT 60.907 61.111 0.00 0.00 0.00 4.24
888 1426 2.489275 CCGCCACAACCAACAGCTT 61.489 57.895 0.00 0.00 0.00 3.74
889 1427 1.008538 CGCCACAACCAACAGCTTC 60.009 57.895 0.00 0.00 0.00 3.86
890 1428 1.363807 GCCACAACCAACAGCTTCC 59.636 57.895 0.00 0.00 0.00 3.46
910 1452 3.766591 TCCTTTCGCTTCTCATCTTCTCT 59.233 43.478 0.00 0.00 0.00 3.10
937 1485 1.388133 GGAGCCCCAAGAAACCCAT 59.612 57.895 0.00 0.00 0.00 4.00
938 1486 0.684479 GGAGCCCCAAGAAACCCATC 60.684 60.000 0.00 0.00 0.00 3.51
939 1487 0.684479 GAGCCCCAAGAAACCCATCC 60.684 60.000 0.00 0.00 0.00 3.51
940 1488 1.149133 AGCCCCAAGAAACCCATCCT 61.149 55.000 0.00 0.00 0.00 3.24
941 1489 0.684479 GCCCCAAGAAACCCATCCTC 60.684 60.000 0.00 0.00 0.00 3.71
942 1490 0.704076 CCCCAAGAAACCCATCCTCA 59.296 55.000 0.00 0.00 0.00 3.86
953 1501 1.693726 CCCATCCTCACCATCTCTCCA 60.694 57.143 0.00 0.00 0.00 3.86
1597 2312 0.234884 CGCGACTTGGGTTCTTGAAC 59.765 55.000 0.00 5.03 0.00 3.18
1665 2381 1.135315 CTTGGAGCAATTCGTGGCG 59.865 57.895 0.00 0.00 34.54 5.69
1787 2527 3.879682 CCGTCGCGGGTGATCGTA 61.880 66.667 6.13 0.00 44.15 3.43
1934 2674 4.166011 GCCATGTGCGTCGAAGCC 62.166 66.667 20.62 12.16 36.02 4.35
2016 2756 1.757340 ATCCTCGTCTTCCCCGTCC 60.757 63.158 0.00 0.00 0.00 4.79
2099 2882 9.668497 GGTTCTATTTTAATGGAGTACTGTCTT 57.332 33.333 0.00 0.00 0.00 3.01
2102 2885 6.759497 ATTTTAATGGAGTACTGTCTTGCC 57.241 37.500 0.00 0.00 0.00 4.52
2103 2886 5.499004 TTTAATGGAGTACTGTCTTGCCT 57.501 39.130 0.00 0.00 0.00 4.75
2104 2887 3.618690 AATGGAGTACTGTCTTGCCTC 57.381 47.619 0.00 0.00 0.00 4.70
2105 2888 2.009681 TGGAGTACTGTCTTGCCTCA 57.990 50.000 0.00 0.00 0.00 3.86
2438 3849 3.482436 TCCCACAACACTACATGGAAAC 58.518 45.455 0.00 0.00 33.80 2.78
2450 4038 8.426489 ACACTACATGGAAACTAGTTTCTACAA 58.574 33.333 35.37 23.46 46.01 2.41
2452 4051 9.654663 ACTACATGGAAACTAGTTTCTACAATC 57.345 33.333 35.37 23.23 46.01 2.67
2654 5707 4.832248 TCACAGTTCACTTGTTCAGAGTT 58.168 39.130 0.00 0.00 0.00 3.01
2800 5896 3.372206 GCATTAGTCTGTAGTGGTTGCAG 59.628 47.826 0.00 0.00 40.50 4.41
2820 5916 2.159142 AGTCTTATTCCGGCCACTTACG 60.159 50.000 2.24 0.00 0.00 3.18
2821 5917 2.101783 TCTTATTCCGGCCACTTACGA 58.898 47.619 2.24 0.00 0.00 3.43
2823 5919 2.519377 TATTCCGGCCACTTACGATG 57.481 50.000 2.24 0.00 0.00 3.84
2825 5921 0.390603 TTCCGGCCACTTACGATGTG 60.391 55.000 2.24 0.00 35.39 3.21
3255 6416 0.613260 TGTGCGGCTCTCCATTACTT 59.387 50.000 0.00 0.00 0.00 2.24
3256 6417 1.009829 GTGCGGCTCTCCATTACTTG 58.990 55.000 0.00 0.00 0.00 3.16
3258 6419 1.440145 GCGGCTCTCCATTACTTGGC 61.440 60.000 0.00 0.00 46.01 4.52
3297 6534 1.542030 CCGACTCGATCTCCCTTATGG 59.458 57.143 0.00 0.00 0.00 2.74
3454 6691 2.555199 GAAACACCCCTGATCATCTCG 58.445 52.381 0.00 0.00 0.00 4.04
3593 6830 3.953775 CCAGACCCGGTGTTGCCT 61.954 66.667 0.00 0.00 34.25 4.75
3594 6831 2.669569 CAGACCCGGTGTTGCCTG 60.670 66.667 0.00 0.00 34.25 4.85
3595 6832 4.643387 AGACCCGGTGTTGCCTGC 62.643 66.667 0.00 0.00 34.25 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 6.822667 ACTCATGTTTCATCATTTAGCACA 57.177 33.333 0.00 0.00 0.00 4.57
19 20 9.500785 TGTCTTGTACTCATGTTTCATCATTTA 57.499 29.630 0.00 0.00 0.00 1.40
72 73 7.167801 GCTTACTCATCGTAGTTTTAGGATGTC 59.832 40.741 13.65 0.00 45.63 3.06
78 79 7.987268 TGATGCTTACTCATCGTAGTTTTAG 57.013 36.000 0.00 0.00 44.32 1.85
100 101 8.415950 ACTTATGTTTGTTGGATGGTTAATGA 57.584 30.769 0.00 0.00 0.00 2.57
116 117 7.064253 GGTGCAGTAGATTAACGACTTATGTTT 59.936 37.037 0.00 0.00 32.40 2.83
176 177 1.890979 CATCCTGTCATGGAGCCGC 60.891 63.158 0.00 0.00 39.78 6.53
179 180 2.988010 TACACATCCTGTCATGGAGC 57.012 50.000 0.00 0.00 39.78 4.70
236 237 6.664816 TCAAGGTTAAGTATCCTTTCTACGGA 59.335 38.462 0.00 0.00 41.44 4.69
276 277 9.754382 GGATGATTGTTTTGCATGTAGATTATT 57.246 29.630 0.00 0.00 0.00 1.40
321 322 6.465464 CCCTCATGTCCATGACTATTCTGAAT 60.465 42.308 8.14 8.14 42.42 2.57
339 341 1.302431 TCGTGTTGGTGCCCTCATG 60.302 57.895 0.00 0.00 0.00 3.07
354 356 3.368427 CCACCTCATGTTCTATGTGTCGT 60.368 47.826 0.00 0.00 0.00 4.34
388 390 4.103153 TGGGAGAAAAGAGAGAAAAGCAGA 59.897 41.667 0.00 0.00 0.00 4.26
392 394 5.182760 CACCATGGGAGAAAAGAGAGAAAAG 59.817 44.000 18.09 0.00 0.00 2.27
441 443 4.671508 GCGCATCAAAGCATACAAGTTGTA 60.672 41.667 17.74 17.74 37.24 2.41
670 691 6.878317 ACTGCTATGTTTCTCAGCTTATACA 58.122 36.000 0.00 0.00 36.26 2.29
745 1256 1.752683 AGTTAGATCCGCACGTCTCT 58.247 50.000 0.00 0.00 0.00 3.10
746 1257 2.563471 AAGTTAGATCCGCACGTCTC 57.437 50.000 0.00 0.00 0.00 3.36
887 1425 4.221703 AGAGAAGATGAGAAGCGAAAGGAA 59.778 41.667 0.00 0.00 0.00 3.36
888 1426 3.766591 AGAGAAGATGAGAAGCGAAAGGA 59.233 43.478 0.00 0.00 0.00 3.36
889 1427 4.122143 AGAGAAGATGAGAAGCGAAAGG 57.878 45.455 0.00 0.00 0.00 3.11
890 1428 4.566360 GGAAGAGAAGATGAGAAGCGAAAG 59.434 45.833 0.00 0.00 0.00 2.62
937 1485 0.684479 CGGTGGAGAGATGGTGAGGA 60.684 60.000 0.00 0.00 0.00 3.71
938 1486 1.819229 CGGTGGAGAGATGGTGAGG 59.181 63.158 0.00 0.00 0.00 3.86
939 1487 1.142748 GCGGTGGAGAGATGGTGAG 59.857 63.158 0.00 0.00 0.00 3.51
940 1488 2.710902 CGCGGTGGAGAGATGGTGA 61.711 63.158 0.00 0.00 0.00 4.02
941 1489 2.202797 CGCGGTGGAGAGATGGTG 60.203 66.667 0.00 0.00 0.00 4.17
942 1490 4.148825 GCGCGGTGGAGAGATGGT 62.149 66.667 8.83 0.00 0.00 3.55
966 1547 1.806568 CTGGAGAGCAGAGACGGTC 59.193 63.158 0.00 0.00 0.00 4.79
1665 2381 2.380660 TCAAACACGAAGCGCAAATTC 58.619 42.857 11.47 3.63 0.00 2.17
2099 2882 2.023673 CTGTTTTCCAACACTGAGGCA 58.976 47.619 0.00 0.00 38.03 4.75
2100 2883 2.024414 ACTGTTTTCCAACACTGAGGC 58.976 47.619 0.00 0.00 38.03 4.70
2102 2885 4.701956 AACACTGTTTTCCAACACTGAG 57.298 40.909 0.00 0.00 38.03 3.35
2103 2886 5.004448 TGTAACACTGTTTTCCAACACTGA 58.996 37.500 0.00 0.00 38.03 3.41
2104 2887 5.106317 ACTGTAACACTGTTTTCCAACACTG 60.106 40.000 0.00 0.00 38.03 3.66
2105 2888 5.007682 ACTGTAACACTGTTTTCCAACACT 58.992 37.500 0.00 0.00 38.03 3.55
2330 3734 9.082313 TCTATGTGAAGCTCAACTCATATGATA 57.918 33.333 5.72 0.00 0.00 2.15
2331 3735 7.960262 TCTATGTGAAGCTCAACTCATATGAT 58.040 34.615 5.72 0.00 0.00 2.45
2332 3736 7.352079 TCTATGTGAAGCTCAACTCATATGA 57.648 36.000 5.07 5.07 0.00 2.15
2333 3737 8.429493 TTTCTATGTGAAGCTCAACTCATATG 57.571 34.615 5.82 0.00 35.89 1.78
2334 3738 9.624373 ATTTTCTATGTGAAGCTCAACTCATAT 57.376 29.630 0.00 0.00 35.89 1.78
2450 4038 8.137437 CAGTTGATGTACAAAACCTGAAAAGAT 58.863 33.333 16.89 0.00 40.36 2.40
2452 4051 7.257722 ACAGTTGATGTACAAAACCTGAAAAG 58.742 34.615 16.89 5.84 41.60 2.27
2703 5763 5.073144 AGGTTTCCTACATTGTCAGGAGAAA 59.927 40.000 12.03 5.75 41.89 2.52
2800 5896 2.159198 TCGTAAGTGGCCGGAATAAGAC 60.159 50.000 5.05 0.00 39.48 3.01
2820 5916 2.609427 TGCTCTGCTATCACCACATC 57.391 50.000 0.00 0.00 0.00 3.06
2821 5917 2.172082 ACATGCTCTGCTATCACCACAT 59.828 45.455 0.00 0.00 0.00 3.21
2823 5919 2.322355 ACATGCTCTGCTATCACCAC 57.678 50.000 0.00 0.00 0.00 4.16
2825 5921 2.615912 GGAAACATGCTCTGCTATCACC 59.384 50.000 0.00 0.00 0.00 4.02
2826 5922 3.273434 TGGAAACATGCTCTGCTATCAC 58.727 45.455 0.00 0.00 33.40 3.06
2827 5923 3.538591 CTGGAAACATGCTCTGCTATCA 58.461 45.455 0.00 0.00 41.51 2.15
2896 6033 4.759782 TCTGCTATAGTTTGGACTGAAGC 58.240 43.478 0.84 7.57 41.57 3.86
2897 6034 6.214191 TCTCTGCTATAGTTTGGACTGAAG 57.786 41.667 0.84 0.00 36.60 3.02
3049 6197 9.604626 CAGAAGTTGCTAAAAGAAACTATTCTG 57.395 33.333 12.10 12.10 43.21 3.02
3255 6416 2.421388 CCAAGAATTATGGAGTCGGCCA 60.421 50.000 2.24 0.00 40.56 5.36
3256 6417 2.222027 CCAAGAATTATGGAGTCGGCC 58.778 52.381 4.09 0.00 40.56 6.13
3257 6418 1.604278 GCCAAGAATTATGGAGTCGGC 59.396 52.381 12.76 0.00 40.56 5.54
3258 6419 2.222027 GGCCAAGAATTATGGAGTCGG 58.778 52.381 12.76 0.00 40.56 4.79
3297 6534 3.932545 TTCTTCTGACTGTCTGAGAGC 57.067 47.619 15.47 0.00 0.00 4.09
3454 6691 2.912025 CTGTTGGGGTGGTGTGCC 60.912 66.667 0.00 0.00 0.00 5.01
3514 6751 4.811557 GCCAGGTATAGTCTCACATGAAAC 59.188 45.833 0.00 0.00 0.00 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.