Multiple sequence alignment - TraesCS7A01G113700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G113700 chr7A 100.000 2897 0 0 1 2897 69955965 69958861 0.000000e+00 5350
1 TraesCS7A01G113700 chr7A 86.231 1547 159 38 679 2213 69557406 69555902 0.000000e+00 1628
2 TraesCS7A01G113700 chr7D 87.996 1991 159 31 204 2183 65621316 65623237 0.000000e+00 2279
3 TraesCS7A01G113700 chr7D 88.619 1564 126 17 703 2252 65449071 65447546 0.000000e+00 1855
4 TraesCS7A01G113700 chr7D 87.225 1456 125 20 795 2245 65442200 65440801 0.000000e+00 1602
5 TraesCS7A01G113700 chr7D 93.750 304 13 6 2246 2547 65624883 65625182 4.400000e-123 451
6 TraesCS7A01G113700 chr7D 86.158 419 33 14 1 403 65449894 65449485 2.060000e-116 429
7 TraesCS7A01G113700 chr7D 89.474 152 13 2 572 720 65449235 65449084 3.810000e-44 189
8 TraesCS7A01G113700 chr7B 89.722 1761 112 24 502 2245 7349647 7351355 0.000000e+00 2185
9 TraesCS7A01G113700 chr7B 89.010 1556 121 17 703 2245 7030667 7032185 0.000000e+00 1881
10 TraesCS7A01G113700 chr7B 83.939 1239 104 30 80 1271 7312468 7311278 0.000000e+00 1098
11 TraesCS7A01G113700 chr7B 81.841 391 41 11 357 721 7030268 7030654 4.690000e-78 302
12 TraesCS7A01G113700 chr7B 78.571 252 38 10 2662 2897 323757218 323756967 5.000000e-33 152
13 TraesCS7A01G113700 chr7B 88.119 101 12 0 2654 2754 512760398 512760298 1.410000e-23 121
14 TraesCS7A01G113700 chr2D 84.244 1263 161 25 660 1904 574448379 574447137 0.000000e+00 1195
15 TraesCS7A01G113700 chr2B 84.202 1266 157 29 660 1904 690683427 690682184 0.000000e+00 1190
16 TraesCS7A01G113700 chr2B 84.954 1183 135 22 743 1904 690715506 690714346 0.000000e+00 1158
17 TraesCS7A01G113700 chr2B 82.470 251 33 7 2654 2896 83724794 83724547 2.930000e-50 209
18 TraesCS7A01G113700 chr1D 78.346 254 38 7 2654 2897 448390044 448390290 6.470000e-32 148
19 TraesCS7A01G113700 chr4A 77.821 257 44 9 2654 2897 584992167 584991911 2.330000e-31 147


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G113700 chr7A 69955965 69958861 2896 False 5350.000000 5350 100.000000 1 2897 1 chr7A.!!$F1 2896
1 TraesCS7A01G113700 chr7A 69555902 69557406 1504 True 1628.000000 1628 86.231000 679 2213 1 chr7A.!!$R1 1534
2 TraesCS7A01G113700 chr7D 65440801 65442200 1399 True 1602.000000 1602 87.225000 795 2245 1 chr7D.!!$R1 1450
3 TraesCS7A01G113700 chr7D 65621316 65625182 3866 False 1365.000000 2279 90.873000 204 2547 2 chr7D.!!$F1 2343
4 TraesCS7A01G113700 chr7D 65447546 65449894 2348 True 824.333333 1855 88.083667 1 2252 3 chr7D.!!$R2 2251
5 TraesCS7A01G113700 chr7B 7349647 7351355 1708 False 2185.000000 2185 89.722000 502 2245 1 chr7B.!!$F1 1743
6 TraesCS7A01G113700 chr7B 7311278 7312468 1190 True 1098.000000 1098 83.939000 80 1271 1 chr7B.!!$R1 1191
7 TraesCS7A01G113700 chr7B 7030268 7032185 1917 False 1091.500000 1881 85.425500 357 2245 2 chr7B.!!$F2 1888
8 TraesCS7A01G113700 chr2D 574447137 574448379 1242 True 1195.000000 1195 84.244000 660 1904 1 chr2D.!!$R1 1244
9 TraesCS7A01G113700 chr2B 690682184 690683427 1243 True 1190.000000 1190 84.202000 660 1904 1 chr2B.!!$R2 1244
10 TraesCS7A01G113700 chr2B 690714346 690715506 1160 True 1158.000000 1158 84.954000 743 1904 1 chr2B.!!$R3 1161

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
554 604 0.965439 GAGTATGATCTGCTCCGCCT 59.035 55.0 0.0 0.0 30.91 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2403 4360 1.079503 CGAAGTAGACTTTGGCCAGC 58.92 55.0 5.11 0.0 36.11 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 4.671831 TGCATTGAAATACCAAAGAGGGA 58.328 39.130 0.00 0.00 43.89 4.20
40 41 4.316025 TTGAAATACCAAAGAGGGAGGG 57.684 45.455 0.00 0.00 43.89 4.30
110 122 8.119226 CGAAAGGAAATATGAAAACTGCTAGAG 58.881 37.037 0.00 0.00 0.00 2.43
143 155 7.362574 CGAAATGGATTTAAAAAGACCTGGCTA 60.363 37.037 0.00 0.00 0.00 3.93
146 158 5.475564 TGGATTTAAAAAGACCTGGCTACAC 59.524 40.000 0.00 0.00 0.00 2.90
184 196 2.625823 GGTGGGTTGTGCGACATGG 61.626 63.158 0.00 0.00 0.00 3.66
185 197 1.896660 GTGGGTTGTGCGACATGGT 60.897 57.895 0.00 0.00 0.00 3.55
471 498 1.228154 GGACACCAGTGTGAACCCC 60.228 63.158 8.43 0.00 45.76 4.95
539 589 2.562635 CACCTACGCTAGCTCTGAGTA 58.437 52.381 13.93 6.22 0.00 2.59
554 604 0.965439 GAGTATGATCTGCTCCGCCT 59.035 55.000 0.00 0.00 30.91 5.52
599 781 1.849097 GTTCGTACGATCCATCACCC 58.151 55.000 20.27 0.00 0.00 4.61
628 815 3.037549 TCCATTTGGCCTTTTGTGTTCT 58.962 40.909 3.32 0.00 34.44 3.01
638 827 7.206687 TGGCCTTTTGTGTTCTGTAATTTTAG 58.793 34.615 3.32 0.00 0.00 1.85
645 834 8.829514 TTGTGTTCTGTAATTTTAGTCAAACG 57.170 30.769 0.00 0.00 0.00 3.60
652 841 4.351131 AATTTTAGTCAAACGATCCGGC 57.649 40.909 0.00 0.00 0.00 6.13
716 941 8.645487 GTTATTCCGTTCAAGTAGTACAAGAAG 58.355 37.037 2.52 1.60 0.00 2.85
783 1011 2.600731 CGTTGATTCGAAGCTGAGAGT 58.399 47.619 15.31 0.00 0.00 3.24
794 1022 4.202060 CGAAGCTGAGAGTAGAAGGCATTA 60.202 45.833 0.00 0.00 0.00 1.90
795 1023 5.508825 CGAAGCTGAGAGTAGAAGGCATTAT 60.509 44.000 0.00 0.00 0.00 1.28
796 1024 5.885449 AGCTGAGAGTAGAAGGCATTATT 57.115 39.130 0.00 0.00 0.00 1.40
802 1030 7.212976 TGAGAGTAGAAGGCATTATTCACATC 58.787 38.462 0.00 0.00 0.00 3.06
808 1036 5.295292 AGAAGGCATTATTCACATCTGTTCG 59.705 40.000 0.00 0.00 0.00 3.95
867 1121 6.525578 AAACAATACGAGGAGTGTCAGATA 57.474 37.500 0.00 0.00 0.00 1.98
869 1123 4.580995 ACAATACGAGGAGTGTCAGATAGG 59.419 45.833 0.00 0.00 0.00 2.57
968 1263 1.399791 GCAGAAGGCATACACAGAAGC 59.600 52.381 0.00 0.00 43.97 3.86
969 1264 2.703416 CAGAAGGCATACACAGAAGCA 58.297 47.619 0.00 0.00 0.00 3.91
970 1265 3.076621 CAGAAGGCATACACAGAAGCAA 58.923 45.455 0.00 0.00 0.00 3.91
971 1266 3.693085 CAGAAGGCATACACAGAAGCAAT 59.307 43.478 0.00 0.00 0.00 3.56
972 1267 4.877823 CAGAAGGCATACACAGAAGCAATA 59.122 41.667 0.00 0.00 0.00 1.90
973 1268 5.007430 CAGAAGGCATACACAGAAGCAATAG 59.993 44.000 0.00 0.00 0.00 1.73
974 1269 3.813443 AGGCATACACAGAAGCAATAGG 58.187 45.455 0.00 0.00 0.00 2.57
975 1270 2.880890 GGCATACACAGAAGCAATAGGG 59.119 50.000 0.00 0.00 0.00 3.53
1161 1497 4.154556 GCTACCGGCAACTACAAATTTGTA 59.845 41.667 25.48 25.48 40.55 2.41
1365 1701 0.736325 CCCAGGACGCTAAGAACGTG 60.736 60.000 0.00 0.00 45.24 4.49
1518 1854 3.840666 TCCTCAAAGGATACAGCAACTCT 59.159 43.478 0.00 0.00 40.06 3.24
1806 2142 5.649395 GTCAGATGTTCTCCCATTGATCAAA 59.351 40.000 13.09 0.00 0.00 2.69
1947 2285 6.264292 AGGTACATGTGTGCTTTTTCATTGTA 59.736 34.615 9.11 0.00 0.00 2.41
1960 2298 6.627395 TTTTCATTGTAACGTGTGAGGAAT 57.373 33.333 0.00 0.00 0.00 3.01
1963 2303 5.060506 TCATTGTAACGTGTGAGGAATTGT 58.939 37.500 0.00 0.00 0.00 2.71
2016 2377 6.317789 AGTAATTGTGTGTGACTTGATTGG 57.682 37.500 0.00 0.00 0.00 3.16
2172 2544 3.581024 TGATTGCACAAAGGAGCATTC 57.419 42.857 0.00 0.00 40.33 2.67
2202 2965 6.772716 ACTTTGTTTCATGTGTCTTATCCACT 59.227 34.615 0.00 0.00 33.92 4.00
2203 2966 6.558771 TTGTTTCATGTGTCTTATCCACTG 57.441 37.500 0.00 0.00 33.92 3.66
2340 4295 8.800231 TTTTGTGATGTTACATCAATGAACTG 57.200 30.769 26.87 0.00 0.00 3.16
2341 4296 7.742556 TTGTGATGTTACATCAATGAACTGA 57.257 32.000 26.87 7.32 0.00 3.41
2377 4334 5.365021 AATTGAACCCAATGTGTTTCCAA 57.635 34.783 0.00 0.00 41.84 3.53
2381 4338 3.658757 ACCCAATGTGTTTCCAATTCG 57.341 42.857 0.00 0.00 0.00 3.34
2403 4360 5.086058 CGTGAAATGTGAGGGAAAATAACG 58.914 41.667 0.00 0.00 0.00 3.18
2421 4378 1.079503 CGCTGGCCAAAGTCTACTTC 58.920 55.000 7.01 0.00 34.61 3.01
2428 4385 3.678548 GGCCAAAGTCTACTTCGTACAAG 59.321 47.826 0.00 0.00 34.61 3.16
2505 4462 4.698201 TTACTGTGATGTTCTGGTTGGA 57.302 40.909 0.00 0.00 0.00 3.53
2512 4469 0.550914 TGTTCTGGTTGGACTGCCTT 59.449 50.000 0.00 0.00 34.31 4.35
2513 4470 0.954452 GTTCTGGTTGGACTGCCTTG 59.046 55.000 0.00 0.00 34.31 3.61
2547 4504 7.701539 TCTCATTTTATTGCTTACACCACAT 57.298 32.000 0.00 0.00 0.00 3.21
2548 4505 7.761409 TCTCATTTTATTGCTTACACCACATC 58.239 34.615 0.00 0.00 0.00 3.06
2549 4506 6.550843 TCATTTTATTGCTTACACCACATCG 58.449 36.000 0.00 0.00 0.00 3.84
2550 4507 4.349663 TTTATTGCTTACACCACATCGC 57.650 40.909 0.00 0.00 0.00 4.58
2551 4508 1.819928 ATTGCTTACACCACATCGCA 58.180 45.000 0.00 0.00 0.00 5.10
2552 4509 1.155889 TTGCTTACACCACATCGCAG 58.844 50.000 0.00 0.00 0.00 5.18
2553 4510 0.034756 TGCTTACACCACATCGCAGT 59.965 50.000 0.00 0.00 0.00 4.40
2554 4511 1.273886 TGCTTACACCACATCGCAGTA 59.726 47.619 0.00 0.00 0.00 2.74
2555 4512 2.289133 TGCTTACACCACATCGCAGTAA 60.289 45.455 0.00 0.00 0.00 2.24
2556 4513 2.739913 GCTTACACCACATCGCAGTAAA 59.260 45.455 0.00 0.00 0.00 2.01
2557 4514 3.187637 GCTTACACCACATCGCAGTAAAA 59.812 43.478 0.00 0.00 0.00 1.52
2558 4515 4.142687 GCTTACACCACATCGCAGTAAAAT 60.143 41.667 0.00 0.00 0.00 1.82
2559 4516 5.619086 GCTTACACCACATCGCAGTAAAATT 60.619 40.000 0.00 0.00 0.00 1.82
2560 4517 4.846779 ACACCACATCGCAGTAAAATTT 57.153 36.364 0.00 0.00 0.00 1.82
2561 4518 4.545610 ACACCACATCGCAGTAAAATTTG 58.454 39.130 0.00 0.00 0.00 2.32
2562 4519 3.919804 CACCACATCGCAGTAAAATTTGG 59.080 43.478 0.00 0.00 0.00 3.28
2563 4520 3.823873 ACCACATCGCAGTAAAATTTGGA 59.176 39.130 0.00 0.00 0.00 3.53
2564 4521 4.462483 ACCACATCGCAGTAAAATTTGGAT 59.538 37.500 0.00 0.00 0.00 3.41
2565 4522 5.047377 ACCACATCGCAGTAAAATTTGGATT 60.047 36.000 0.00 0.00 0.00 3.01
2566 4523 5.868801 CCACATCGCAGTAAAATTTGGATTT 59.131 36.000 0.00 0.00 37.06 2.17
2567 4524 6.183360 CCACATCGCAGTAAAATTTGGATTTG 60.183 38.462 0.00 0.00 35.69 2.32
2568 4525 6.365789 CACATCGCAGTAAAATTTGGATTTGT 59.634 34.615 0.00 0.00 35.69 2.83
2569 4526 7.540400 CACATCGCAGTAAAATTTGGATTTGTA 59.460 33.333 0.00 0.00 35.69 2.41
2570 4527 8.085296 ACATCGCAGTAAAATTTGGATTTGTAA 58.915 29.630 0.00 0.00 35.69 2.41
2571 4528 8.920665 CATCGCAGTAAAATTTGGATTTGTAAA 58.079 29.630 0.00 0.00 35.69 2.01
2572 4529 8.514136 TCGCAGTAAAATTTGGATTTGTAAAG 57.486 30.769 0.00 0.00 35.69 1.85
2573 4530 8.138712 TCGCAGTAAAATTTGGATTTGTAAAGT 58.861 29.630 0.00 0.00 35.69 2.66
2574 4531 9.400638 CGCAGTAAAATTTGGATTTGTAAAGTA 57.599 29.630 0.00 0.00 35.69 2.24
2615 4572 8.121305 TGGACTTTAACAAATAGCATTGATGT 57.879 30.769 4.22 0.00 34.38 3.06
2616 4573 9.237187 TGGACTTTAACAAATAGCATTGATGTA 57.763 29.630 4.22 0.00 34.38 2.29
2619 4576 9.573133 ACTTTAACAAATAGCATTGATGTAAGC 57.427 29.630 4.22 0.00 34.38 3.09
2620 4577 9.571810 CTTTAACAAATAGCATTGATGTAAGCA 57.428 29.630 4.22 0.00 34.38 3.91
2653 4610 8.777865 TCTAGTCTCTTTCATGTTTGTAATGG 57.222 34.615 0.00 0.00 0.00 3.16
2654 4611 6.259550 AGTCTCTTTCATGTTTGTAATGGC 57.740 37.500 0.00 0.00 0.00 4.40
2655 4612 5.183904 AGTCTCTTTCATGTTTGTAATGGCC 59.816 40.000 0.00 0.00 0.00 5.36
2656 4613 4.462483 TCTCTTTCATGTTTGTAATGGCCC 59.538 41.667 0.00 0.00 0.00 5.80
2657 4614 4.415596 TCTTTCATGTTTGTAATGGCCCT 58.584 39.130 0.00 0.00 0.00 5.19
2658 4615 4.837860 TCTTTCATGTTTGTAATGGCCCTT 59.162 37.500 0.00 0.00 0.00 3.95
2659 4616 4.533919 TTCATGTTTGTAATGGCCCTTG 57.466 40.909 0.00 0.00 0.00 3.61
2660 4617 3.505386 TCATGTTTGTAATGGCCCTTGT 58.495 40.909 0.00 0.00 0.00 3.16
2661 4618 3.509575 TCATGTTTGTAATGGCCCTTGTC 59.490 43.478 0.00 0.00 0.00 3.18
2662 4619 2.950781 TGTTTGTAATGGCCCTTGTCA 58.049 42.857 0.00 0.00 0.00 3.58
2663 4620 3.505386 TGTTTGTAATGGCCCTTGTCAT 58.495 40.909 0.00 0.00 38.84 3.06
2664 4621 3.509575 TGTTTGTAATGGCCCTTGTCATC 59.490 43.478 0.00 0.00 35.21 2.92
2665 4622 2.036958 TGTAATGGCCCTTGTCATCG 57.963 50.000 0.00 0.00 35.21 3.84
2666 4623 0.663153 GTAATGGCCCTTGTCATCGC 59.337 55.000 0.00 0.00 35.21 4.58
2667 4624 0.465460 TAATGGCCCTTGTCATCGCC 60.465 55.000 0.00 0.00 35.21 5.54
2669 4626 2.124151 GGCCCTTGTCATCGCCAT 60.124 61.111 0.00 0.00 41.25 4.40
2670 4627 2.189499 GGCCCTTGTCATCGCCATC 61.189 63.158 0.00 0.00 41.25 3.51
2671 4628 2.537560 GCCCTTGTCATCGCCATCG 61.538 63.158 0.00 0.00 0.00 3.84
2672 4629 2.537560 CCCTTGTCATCGCCATCGC 61.538 63.158 0.00 0.00 35.26 4.58
2673 4630 2.537560 CCTTGTCATCGCCATCGCC 61.538 63.158 0.00 0.00 35.26 5.54
2674 4631 2.874694 CTTGTCATCGCCATCGCCG 61.875 63.158 0.00 0.00 35.26 6.46
2688 4645 4.778143 GCCGCCGGTGAGGTCAAT 62.778 66.667 18.79 0.00 43.70 2.57
2689 4646 2.897207 CCGCCGGTGAGGTCAATA 59.103 61.111 18.79 0.00 43.70 1.90
2690 4647 1.219664 CCGCCGGTGAGGTCAATAA 59.780 57.895 18.79 0.00 43.70 1.40
2691 4648 0.391927 CCGCCGGTGAGGTCAATAAA 60.392 55.000 18.79 0.00 43.70 1.40
2692 4649 1.006832 CGCCGGTGAGGTCAATAAAG 58.993 55.000 10.20 0.00 43.70 1.85
2693 4650 1.404986 CGCCGGTGAGGTCAATAAAGA 60.405 52.381 10.20 0.00 43.70 2.52
2694 4651 2.007608 GCCGGTGAGGTCAATAAAGAC 58.992 52.381 1.90 0.00 43.70 3.01
2695 4652 2.268298 CCGGTGAGGTCAATAAAGACG 58.732 52.381 0.00 0.00 39.42 4.18
2696 4653 2.268298 CGGTGAGGTCAATAAAGACGG 58.732 52.381 0.00 0.00 39.42 4.79
2697 4654 2.629051 GGTGAGGTCAATAAAGACGGG 58.371 52.381 0.00 0.00 39.42 5.28
2698 4655 2.235402 GGTGAGGTCAATAAAGACGGGA 59.765 50.000 0.00 0.00 39.42 5.14
2699 4656 3.522553 GTGAGGTCAATAAAGACGGGAG 58.477 50.000 0.00 0.00 39.42 4.30
2700 4657 2.093658 TGAGGTCAATAAAGACGGGAGC 60.094 50.000 0.00 0.00 39.42 4.70
2701 4658 1.209747 AGGTCAATAAAGACGGGAGCC 59.790 52.381 0.00 0.00 39.42 4.70
2712 4669 3.319198 GGGAGCCGAGACAACCCA 61.319 66.667 0.00 0.00 40.20 4.51
2713 4670 2.670148 GGGAGCCGAGACAACCCAT 61.670 63.158 0.00 0.00 40.20 4.00
2714 4671 1.153349 GGAGCCGAGACAACCCATC 60.153 63.158 0.00 0.00 0.00 3.51
2715 4672 1.153349 GAGCCGAGACAACCCATCC 60.153 63.158 0.00 0.00 0.00 3.51
2716 4673 1.899437 GAGCCGAGACAACCCATCCA 61.899 60.000 0.00 0.00 0.00 3.41
2717 4674 1.002624 GCCGAGACAACCCATCCAA 60.003 57.895 0.00 0.00 0.00 3.53
2718 4675 0.608035 GCCGAGACAACCCATCCAAA 60.608 55.000 0.00 0.00 0.00 3.28
2719 4676 1.165270 CCGAGACAACCCATCCAAAC 58.835 55.000 0.00 0.00 0.00 2.93
2720 4677 0.796312 CGAGACAACCCATCCAAACG 59.204 55.000 0.00 0.00 0.00 3.60
2721 4678 0.521735 GAGACAACCCATCCAAACGC 59.478 55.000 0.00 0.00 0.00 4.84
2722 4679 0.893727 AGACAACCCATCCAAACGCC 60.894 55.000 0.00 0.00 0.00 5.68
2723 4680 2.195123 GACAACCCATCCAAACGCCG 62.195 60.000 0.00 0.00 0.00 6.46
2724 4681 3.370231 AACCCATCCAAACGCCGC 61.370 61.111 0.00 0.00 0.00 6.53
2725 4682 3.860930 AACCCATCCAAACGCCGCT 62.861 57.895 0.00 0.00 0.00 5.52
2726 4683 3.061848 CCCATCCAAACGCCGCTT 61.062 61.111 0.00 0.00 0.00 4.68
2727 4684 2.179018 CCATCCAAACGCCGCTTG 59.821 61.111 0.00 0.00 0.00 4.01
2728 4685 2.179018 CATCCAAACGCCGCTTGG 59.821 61.111 12.95 12.95 44.07 3.61
2729 4686 2.282180 ATCCAAACGCCGCTTGGT 60.282 55.556 17.93 4.17 43.33 3.67
2730 4687 1.003112 ATCCAAACGCCGCTTGGTA 60.003 52.632 17.93 6.53 43.33 3.25
2731 4688 1.024579 ATCCAAACGCCGCTTGGTAG 61.025 55.000 17.93 0.00 43.33 3.18
2732 4689 2.686816 CCAAACGCCGCTTGGTAGG 61.687 63.158 11.04 0.00 38.85 3.18
2738 4695 4.408821 CCGCTTGGTAGGCTGCCA 62.409 66.667 21.16 21.16 0.00 4.92
2739 4696 2.821366 CGCTTGGTAGGCTGCCAG 60.821 66.667 23.56 17.98 37.31 4.85
2740 4697 2.439156 GCTTGGTAGGCTGCCAGG 60.439 66.667 25.93 25.93 37.31 4.45
2741 4698 2.971598 GCTTGGTAGGCTGCCAGGA 61.972 63.158 32.46 15.84 37.31 3.86
2742 4699 1.078143 CTTGGTAGGCTGCCAGGAC 60.078 63.158 26.09 14.96 37.31 3.85
2743 4700 1.841302 CTTGGTAGGCTGCCAGGACA 61.841 60.000 26.09 10.51 37.31 4.02
2744 4701 1.841302 TTGGTAGGCTGCCAGGACAG 61.841 60.000 23.56 6.54 40.80 3.51
2763 4720 3.905678 CTCCTCCGGCGGCTACTG 61.906 72.222 23.83 7.36 0.00 2.74
2775 4732 3.797353 CTACTGGGGTGCCGGCAT 61.797 66.667 35.23 18.54 0.00 4.40
2776 4733 3.334891 TACTGGGGTGCCGGCATT 61.335 61.111 35.23 14.97 0.00 3.56
2777 4734 3.636929 TACTGGGGTGCCGGCATTG 62.637 63.158 35.23 21.68 0.00 2.82
2810 4767 3.077556 GCTCCTCCTCCGCCTCAA 61.078 66.667 0.00 0.00 0.00 3.02
2811 4768 3.087666 GCTCCTCCTCCGCCTCAAG 62.088 68.421 0.00 0.00 0.00 3.02
2812 4769 2.364317 TCCTCCTCCGCCTCAAGG 60.364 66.667 0.00 0.00 38.53 3.61
2829 4786 2.899339 GCGCAATGCCTCCTCTCC 60.899 66.667 0.30 0.00 37.76 3.71
2830 4787 2.906458 CGCAATGCCTCCTCTCCT 59.094 61.111 0.00 0.00 0.00 3.69
2831 4788 1.222936 CGCAATGCCTCCTCTCCTT 59.777 57.895 0.00 0.00 0.00 3.36
2832 4789 0.813210 CGCAATGCCTCCTCTCCTTC 60.813 60.000 0.00 0.00 0.00 3.46
2833 4790 0.545646 GCAATGCCTCCTCTCCTTCT 59.454 55.000 0.00 0.00 0.00 2.85
2834 4791 1.746516 GCAATGCCTCCTCTCCTTCTG 60.747 57.143 0.00 0.00 0.00 3.02
2835 4792 0.545646 AATGCCTCCTCTCCTTCTGC 59.454 55.000 0.00 0.00 0.00 4.26
2836 4793 0.326427 ATGCCTCCTCTCCTTCTGCT 60.326 55.000 0.00 0.00 0.00 4.24
2837 4794 0.975040 TGCCTCCTCTCCTTCTGCTC 60.975 60.000 0.00 0.00 0.00 4.26
2838 4795 1.685355 GCCTCCTCTCCTTCTGCTCC 61.685 65.000 0.00 0.00 0.00 4.70
2839 4796 0.032217 CCTCCTCTCCTTCTGCTCCT 60.032 60.000 0.00 0.00 0.00 3.69
2840 4797 1.216678 CCTCCTCTCCTTCTGCTCCTA 59.783 57.143 0.00 0.00 0.00 2.94
2841 4798 2.586425 CTCCTCTCCTTCTGCTCCTAG 58.414 57.143 0.00 0.00 0.00 3.02
2842 4799 1.926665 TCCTCTCCTTCTGCTCCTAGT 59.073 52.381 0.00 0.00 0.00 2.57
2843 4800 2.031120 CCTCTCCTTCTGCTCCTAGTG 58.969 57.143 0.00 0.00 0.00 2.74
2844 4801 1.408702 CTCTCCTTCTGCTCCTAGTGC 59.591 57.143 0.00 0.00 0.00 4.40
2845 4802 1.189752 CTCCTTCTGCTCCTAGTGCA 58.810 55.000 7.33 7.33 38.81 4.57
2846 4803 1.761784 CTCCTTCTGCTCCTAGTGCAT 59.238 52.381 7.90 0.00 39.86 3.96
2847 4804 2.170187 CTCCTTCTGCTCCTAGTGCATT 59.830 50.000 7.90 0.00 39.86 3.56
2848 4805 2.573462 TCCTTCTGCTCCTAGTGCATTT 59.427 45.455 7.90 0.00 39.86 2.32
2849 4806 2.681848 CCTTCTGCTCCTAGTGCATTTG 59.318 50.000 7.90 0.00 39.86 2.32
2850 4807 1.742761 TCTGCTCCTAGTGCATTTGC 58.257 50.000 7.90 0.00 39.86 3.68
2851 4808 0.737219 CTGCTCCTAGTGCATTTGCC 59.263 55.000 7.90 0.00 39.86 4.52
2852 4809 1.026182 TGCTCCTAGTGCATTTGCCG 61.026 55.000 0.00 0.00 41.18 5.69
2853 4810 1.723870 CTCCTAGTGCATTTGCCGC 59.276 57.895 0.00 0.00 41.18 6.53
2854 4811 0.745845 CTCCTAGTGCATTTGCCGCT 60.746 55.000 0.00 1.46 41.18 5.52
2855 4812 1.026182 TCCTAGTGCATTTGCCGCTG 61.026 55.000 0.00 0.00 41.18 5.18
2856 4813 1.430632 CTAGTGCATTTGCCGCTGG 59.569 57.895 0.00 0.00 41.18 4.85
2894 4851 4.704833 GAGCCAGCGTGCCTTCCA 62.705 66.667 0.00 0.00 0.00 3.53
2895 4852 4.711949 AGCCAGCGTGCCTTCCAG 62.712 66.667 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 4.671831 TCCCTCTTTGGTATTTCAATGCA 58.328 39.130 0.00 0.00 0.00 3.96
20 21 2.580783 CCCCTCCCTCTTTGGTATTTCA 59.419 50.000 0.00 0.00 0.00 2.69
26 27 1.541275 TTTTCCCCTCCCTCTTTGGT 58.459 50.000 0.00 0.00 0.00 3.67
110 122 7.488150 GTCTTTTTAAATCCATTTCGTCCATCC 59.512 37.037 0.00 0.00 0.00 3.51
166 178 2.625823 CCATGTCGCACAACCCACC 61.626 63.158 0.00 0.00 0.00 4.61
167 179 1.896660 ACCATGTCGCACAACCCAC 60.897 57.895 0.00 0.00 0.00 4.61
465 492 1.541620 ACAGGGGGAAGAGGGGTTC 60.542 63.158 0.00 0.00 0.00 3.62
471 498 1.893786 CGTGAGACAGGGGGAAGAG 59.106 63.158 0.00 0.00 0.00 2.85
599 781 0.622665 AGGCCAAATGGAGAGGTGAG 59.377 55.000 5.01 0.00 37.39 3.51
628 815 5.163834 GCCGGATCGTTTGACTAAAATTACA 60.164 40.000 5.05 0.00 0.00 2.41
638 827 1.488261 GATCGGCCGGATCGTTTGAC 61.488 60.000 27.83 0.20 42.02 3.18
652 841 5.294552 GTCCAGAATAAGAAAAGGTGATCGG 59.705 44.000 0.00 0.00 0.00 4.18
783 1011 6.479990 CGAACAGATGTGAATAATGCCTTCTA 59.520 38.462 0.00 0.00 0.00 2.10
794 1022 3.055167 TGGATGGACGAACAGATGTGAAT 60.055 43.478 0.00 0.00 0.00 2.57
795 1023 2.301583 TGGATGGACGAACAGATGTGAA 59.698 45.455 0.00 0.00 0.00 3.18
796 1024 1.899142 TGGATGGACGAACAGATGTGA 59.101 47.619 0.00 0.00 0.00 3.58
802 1030 0.729116 GCACATGGATGGACGAACAG 59.271 55.000 0.00 0.00 0.00 3.16
808 1036 2.123428 GCTGGGCACATGGATGGAC 61.123 63.158 0.00 0.00 0.00 4.02
867 1121 2.027469 GGGGACTCGTAATGTGAAACCT 60.027 50.000 0.00 0.00 34.36 3.50
869 1123 2.027469 AGGGGGACTCGTAATGTGAAAC 60.027 50.000 0.00 0.00 37.35 2.78
964 1259 3.823304 CCTATTGCTTCCCCTATTGCTTC 59.177 47.826 0.00 0.00 0.00 3.86
965 1260 3.437052 CCCTATTGCTTCCCCTATTGCTT 60.437 47.826 0.00 0.00 0.00 3.91
966 1261 2.108952 CCCTATTGCTTCCCCTATTGCT 59.891 50.000 0.00 0.00 0.00 3.91
967 1262 2.108250 TCCCTATTGCTTCCCCTATTGC 59.892 50.000 0.00 0.00 0.00 3.56
968 1263 4.664688 ATCCCTATTGCTTCCCCTATTG 57.335 45.455 0.00 0.00 0.00 1.90
969 1264 5.003096 CAATCCCTATTGCTTCCCCTATT 57.997 43.478 0.00 0.00 36.35 1.73
970 1265 4.664688 CAATCCCTATTGCTTCCCCTAT 57.335 45.455 0.00 0.00 36.35 2.57
1161 1497 1.603739 GGCAAGGAAGGCGAGGTTT 60.604 57.895 0.00 0.00 0.00 3.27
1365 1701 2.870411 GTTGTTCCATAGGTATGTCGCC 59.130 50.000 0.00 0.00 31.82 5.54
1395 1731 1.152383 GCCGCGAAGATGACTTACCC 61.152 60.000 8.23 0.00 36.39 3.69
1518 1854 3.289797 CAGGTAGACTCTCCTGCCA 57.710 57.895 11.90 0.00 43.45 4.92
1668 2004 1.156645 GCTTCCATGCGTCAGCTAGG 61.157 60.000 0.00 0.00 45.42 3.02
1806 2142 1.561542 CCTCCATACTTCCCTGTGCTT 59.438 52.381 0.00 0.00 0.00 3.91
1887 2223 5.367060 AGATAGGTAACCCTCTCAAACATCC 59.633 44.000 0.00 0.00 41.45 3.51
1908 2244 6.716628 ACACATGTACCTCACAAATCAAAGAT 59.283 34.615 0.00 0.00 41.55 2.40
1909 2245 6.017192 CACACATGTACCTCACAAATCAAAGA 60.017 38.462 0.00 0.00 41.55 2.52
1947 2285 2.631160 TCCACAATTCCTCACACGTT 57.369 45.000 0.00 0.00 0.00 3.99
2082 2453 8.373981 TCATGTTGAACAAATAATCATGGGTTT 58.626 29.630 0.62 0.00 34.11 3.27
2172 2544 4.675510 AGACACATGAAACAAAGTTGCAG 58.324 39.130 0.00 0.00 0.00 4.41
2202 2965 2.561209 TTGGTAGGTGGATCTAGCCA 57.439 50.000 4.47 0.00 37.04 4.75
2203 2966 5.763876 AATATTGGTAGGTGGATCTAGCC 57.236 43.478 4.47 0.00 37.04 3.93
2319 4274 6.183360 CCCTCAGTTCATTGATGTAACATCAC 60.183 42.308 0.00 0.00 0.00 3.06
2320 4275 5.882000 CCCTCAGTTCATTGATGTAACATCA 59.118 40.000 0.00 0.00 0.00 3.07
2321 4276 5.297776 CCCCTCAGTTCATTGATGTAACATC 59.702 44.000 0.00 0.00 0.00 3.06
2338 4293 6.588719 TTCAATTTATGTTGAACCCCTCAG 57.411 37.500 0.00 0.00 41.70 3.35
2377 4334 5.982890 ATTTTCCCTCACATTTCACGAAT 57.017 34.783 0.00 0.00 0.00 3.34
2381 4338 4.857037 GCGTTATTTTCCCTCACATTTCAC 59.143 41.667 0.00 0.00 0.00 3.18
2403 4360 1.079503 CGAAGTAGACTTTGGCCAGC 58.920 55.000 5.11 0.00 36.11 4.85
2421 4378 4.445718 CCATTACAGCTATGCTCTTGTACG 59.554 45.833 0.00 0.00 36.40 3.67
2428 4385 3.475566 TGGACCATTACAGCTATGCTC 57.524 47.619 0.00 0.00 36.40 4.26
2490 4447 1.545428 GGCAGTCCAACCAGAACATCA 60.545 52.381 0.00 0.00 0.00 3.07
2505 4462 7.530426 AATGAGAAAAATTAGACAAGGCAGT 57.470 32.000 0.00 0.00 0.00 4.40
2543 4500 6.365789 ACAAATCCAAATTTTACTGCGATGTG 59.634 34.615 0.00 0.00 32.69 3.21
2547 4504 8.138712 ACTTTACAAATCCAAATTTTACTGCGA 58.861 29.630 0.00 0.00 32.69 5.10
2548 4505 8.293114 ACTTTACAAATCCAAATTTTACTGCG 57.707 30.769 0.00 0.00 32.69 5.18
2589 4546 8.752187 ACATCAATGCTATTTGTTAAAGTCCAT 58.248 29.630 0.00 0.00 0.00 3.41
2590 4547 8.121305 ACATCAATGCTATTTGTTAAAGTCCA 57.879 30.769 0.00 0.00 0.00 4.02
2593 4550 9.573133 GCTTACATCAATGCTATTTGTTAAAGT 57.427 29.630 0.00 0.00 0.00 2.66
2594 4551 9.571810 TGCTTACATCAATGCTATTTGTTAAAG 57.428 29.630 0.00 0.00 0.00 1.85
2595 4552 9.920133 TTGCTTACATCAATGCTATTTGTTAAA 57.080 25.926 0.00 0.00 0.00 1.52
2627 4584 9.219603 CCATTACAAACATGAAAGAGACTAGAA 57.780 33.333 0.00 0.00 0.00 2.10
2628 4585 7.334421 GCCATTACAAACATGAAAGAGACTAGA 59.666 37.037 0.00 0.00 0.00 2.43
2629 4586 7.414540 GGCCATTACAAACATGAAAGAGACTAG 60.415 40.741 0.00 0.00 0.00 2.57
2630 4587 6.374333 GGCCATTACAAACATGAAAGAGACTA 59.626 38.462 0.00 0.00 0.00 2.59
2631 4588 5.183904 GGCCATTACAAACATGAAAGAGACT 59.816 40.000 0.00 0.00 0.00 3.24
2632 4589 5.402398 GGCCATTACAAACATGAAAGAGAC 58.598 41.667 0.00 0.00 0.00 3.36
2633 4590 4.462483 GGGCCATTACAAACATGAAAGAGA 59.538 41.667 4.39 0.00 0.00 3.10
2634 4591 4.463891 AGGGCCATTACAAACATGAAAGAG 59.536 41.667 6.18 0.00 0.00 2.85
2635 4592 4.415596 AGGGCCATTACAAACATGAAAGA 58.584 39.130 6.18 0.00 0.00 2.52
2636 4593 4.806640 AGGGCCATTACAAACATGAAAG 57.193 40.909 6.18 0.00 0.00 2.62
2637 4594 4.346418 ACAAGGGCCATTACAAACATGAAA 59.654 37.500 0.38 0.00 0.00 2.69
2638 4595 3.900601 ACAAGGGCCATTACAAACATGAA 59.099 39.130 0.38 0.00 0.00 2.57
2639 4596 3.505386 ACAAGGGCCATTACAAACATGA 58.495 40.909 0.38 0.00 0.00 3.07
2640 4597 3.257873 TGACAAGGGCCATTACAAACATG 59.742 43.478 0.38 0.00 0.00 3.21
2641 4598 3.505386 TGACAAGGGCCATTACAAACAT 58.495 40.909 0.38 0.00 0.00 2.71
2642 4599 2.950781 TGACAAGGGCCATTACAAACA 58.049 42.857 0.38 0.00 0.00 2.83
2643 4600 3.427503 CGATGACAAGGGCCATTACAAAC 60.428 47.826 0.38 4.97 0.00 2.93
2644 4601 2.752354 CGATGACAAGGGCCATTACAAA 59.248 45.455 0.38 0.00 0.00 2.83
2645 4602 2.364632 CGATGACAAGGGCCATTACAA 58.635 47.619 0.38 0.00 0.00 2.41
2646 4603 2.016604 GCGATGACAAGGGCCATTACA 61.017 52.381 0.38 7.01 0.00 2.41
2647 4604 0.663153 GCGATGACAAGGGCCATTAC 59.337 55.000 0.38 0.46 0.00 1.89
2648 4605 0.465460 GGCGATGACAAGGGCCATTA 60.465 55.000 0.38 0.00 44.91 1.90
2649 4606 1.754234 GGCGATGACAAGGGCCATT 60.754 57.895 6.18 0.00 44.91 3.16
2650 4607 2.124151 GGCGATGACAAGGGCCAT 60.124 61.111 6.18 0.00 44.91 4.40
2652 4609 2.124151 ATGGCGATGACAAGGGCC 60.124 61.111 0.00 0.00 45.76 5.80
2653 4610 2.537560 CGATGGCGATGACAAGGGC 61.538 63.158 0.00 0.00 40.82 5.19
2654 4611 2.537560 GCGATGGCGATGACAAGGG 61.538 63.158 0.00 0.00 40.82 3.95
2655 4612 2.537560 GGCGATGGCGATGACAAGG 61.538 63.158 0.00 0.00 41.24 3.61
2656 4613 3.017323 GGCGATGGCGATGACAAG 58.983 61.111 0.00 0.00 41.24 3.16
2671 4628 2.862674 TTATTGACCTCACCGGCGGC 62.863 60.000 28.71 9.18 35.61 6.53
2672 4629 0.391927 TTTATTGACCTCACCGGCGG 60.392 55.000 27.06 27.06 35.61 6.13
2673 4630 1.006832 CTTTATTGACCTCACCGGCG 58.993 55.000 0.00 0.00 35.61 6.46
2674 4631 2.007608 GTCTTTATTGACCTCACCGGC 58.992 52.381 0.00 0.00 35.61 6.13
2675 4632 2.268298 CGTCTTTATTGACCTCACCGG 58.732 52.381 0.00 0.00 39.35 5.28
2676 4633 2.268298 CCGTCTTTATTGACCTCACCG 58.732 52.381 0.00 0.00 33.70 4.94
2677 4634 2.235402 TCCCGTCTTTATTGACCTCACC 59.765 50.000 0.00 0.00 33.70 4.02
2678 4635 3.522553 CTCCCGTCTTTATTGACCTCAC 58.477 50.000 0.00 0.00 33.70 3.51
2679 4636 2.093658 GCTCCCGTCTTTATTGACCTCA 60.094 50.000 0.00 0.00 33.70 3.86
2680 4637 2.552031 GCTCCCGTCTTTATTGACCTC 58.448 52.381 0.00 0.00 33.70 3.85
2681 4638 1.209747 GGCTCCCGTCTTTATTGACCT 59.790 52.381 0.00 0.00 33.70 3.85
2682 4639 1.664873 GGCTCCCGTCTTTATTGACC 58.335 55.000 0.00 0.00 33.70 4.02
2683 4640 1.287425 CGGCTCCCGTCTTTATTGAC 58.713 55.000 0.00 0.00 42.73 3.18
2684 4641 3.752796 CGGCTCCCGTCTTTATTGA 57.247 52.632 0.00 0.00 42.73 2.57
2695 4652 2.595009 GATGGGTTGTCTCGGCTCCC 62.595 65.000 0.00 0.00 38.68 4.30
2696 4653 1.153349 GATGGGTTGTCTCGGCTCC 60.153 63.158 0.00 0.00 0.00 4.70
2697 4654 1.153349 GGATGGGTTGTCTCGGCTC 60.153 63.158 0.00 0.00 0.00 4.70
2698 4655 1.488705 TTGGATGGGTTGTCTCGGCT 61.489 55.000 0.00 0.00 0.00 5.52
2699 4656 0.608035 TTTGGATGGGTTGTCTCGGC 60.608 55.000 0.00 0.00 0.00 5.54
2700 4657 1.165270 GTTTGGATGGGTTGTCTCGG 58.835 55.000 0.00 0.00 0.00 4.63
2701 4658 0.796312 CGTTTGGATGGGTTGTCTCG 59.204 55.000 0.00 0.00 0.00 4.04
2702 4659 0.521735 GCGTTTGGATGGGTTGTCTC 59.478 55.000 0.00 0.00 0.00 3.36
2703 4660 0.893727 GGCGTTTGGATGGGTTGTCT 60.894 55.000 0.00 0.00 0.00 3.41
2704 4661 1.584495 GGCGTTTGGATGGGTTGTC 59.416 57.895 0.00 0.00 0.00 3.18
2705 4662 2.265182 CGGCGTTTGGATGGGTTGT 61.265 57.895 0.00 0.00 0.00 3.32
2706 4663 2.566010 CGGCGTTTGGATGGGTTG 59.434 61.111 0.00 0.00 0.00 3.77
2707 4664 3.370231 GCGGCGTTTGGATGGGTT 61.370 61.111 9.37 0.00 0.00 4.11
2708 4665 3.860930 AAGCGGCGTTTGGATGGGT 62.861 57.895 8.54 0.00 0.00 4.51
2709 4666 3.061848 AAGCGGCGTTTGGATGGG 61.062 61.111 8.54 0.00 0.00 4.00
2710 4667 2.179018 CAAGCGGCGTTTGGATGG 59.821 61.111 25.90 2.52 0.00 3.51
2711 4668 1.302383 TACCAAGCGGCGTTTGGATG 61.302 55.000 46.65 28.65 44.79 3.51
2712 4669 1.003112 TACCAAGCGGCGTTTGGAT 60.003 52.632 46.65 34.70 44.79 3.41
2713 4670 1.669760 CTACCAAGCGGCGTTTGGA 60.670 57.895 46.65 32.47 44.79 3.53
2714 4671 2.686816 CCTACCAAGCGGCGTTTGG 61.687 63.158 41.35 41.35 46.81 3.28
2715 4672 2.867472 CCTACCAAGCGGCGTTTG 59.133 61.111 26.50 26.50 34.57 2.93
2716 4673 3.053896 GCCTACCAAGCGGCGTTT 61.054 61.111 9.37 5.78 36.45 3.60
2721 4678 4.408821 TGGCAGCCTACCAAGCGG 62.409 66.667 14.15 0.00 33.12 5.52
2722 4679 2.821366 CTGGCAGCCTACCAAGCG 60.821 66.667 14.15 0.00 36.56 4.68
2723 4680 2.439156 CCTGGCAGCCTACCAAGC 60.439 66.667 14.15 0.00 36.56 4.01
2724 4681 1.078143 GTCCTGGCAGCCTACCAAG 60.078 63.158 14.15 0.15 36.56 3.61
2725 4682 1.841302 CTGTCCTGGCAGCCTACCAA 61.841 60.000 14.15 0.00 36.56 3.67
2726 4683 2.203922 TGTCCTGGCAGCCTACCA 60.204 61.111 14.15 1.11 35.40 3.25
2727 4684 2.586792 CTGTCCTGGCAGCCTACC 59.413 66.667 14.15 0.00 0.00 3.18
2758 4715 3.344137 AATGCCGGCACCCCAGTAG 62.344 63.158 35.50 0.00 0.00 2.57
2759 4716 3.334891 AATGCCGGCACCCCAGTA 61.335 61.111 35.50 6.20 0.00 2.74
2793 4750 3.077556 TTGAGGCGGAGGAGGAGC 61.078 66.667 0.00 0.00 0.00 4.70
2794 4751 2.430610 CCTTGAGGCGGAGGAGGAG 61.431 68.421 0.00 0.00 34.91 3.69
2795 4752 2.364317 CCTTGAGGCGGAGGAGGA 60.364 66.667 0.00 0.00 34.91 3.71
2812 4769 2.883267 AAGGAGAGGAGGCATTGCGC 62.883 60.000 0.00 0.00 41.28 6.09
2813 4770 0.813210 GAAGGAGAGGAGGCATTGCG 60.813 60.000 1.91 0.00 0.00 4.85
2814 4771 0.545646 AGAAGGAGAGGAGGCATTGC 59.454 55.000 0.00 0.00 0.00 3.56
2815 4772 1.746516 GCAGAAGGAGAGGAGGCATTG 60.747 57.143 0.00 0.00 0.00 2.82
2816 4773 0.545646 GCAGAAGGAGAGGAGGCATT 59.454 55.000 0.00 0.00 0.00 3.56
2817 4774 0.326427 AGCAGAAGGAGAGGAGGCAT 60.326 55.000 0.00 0.00 0.00 4.40
2818 4775 0.975040 GAGCAGAAGGAGAGGAGGCA 60.975 60.000 0.00 0.00 0.00 4.75
2819 4776 1.685355 GGAGCAGAAGGAGAGGAGGC 61.685 65.000 0.00 0.00 0.00 4.70
2820 4777 0.032217 AGGAGCAGAAGGAGAGGAGG 60.032 60.000 0.00 0.00 0.00 4.30
2821 4778 2.091885 ACTAGGAGCAGAAGGAGAGGAG 60.092 54.545 0.00 0.00 0.00 3.69
2822 4779 1.926665 ACTAGGAGCAGAAGGAGAGGA 59.073 52.381 0.00 0.00 0.00 3.71
2823 4780 2.031120 CACTAGGAGCAGAAGGAGAGG 58.969 57.143 0.00 0.00 0.00 3.69
2824 4781 1.408702 GCACTAGGAGCAGAAGGAGAG 59.591 57.143 4.74 0.00 0.00 3.20
2825 4782 1.272704 TGCACTAGGAGCAGAAGGAGA 60.273 52.381 7.91 0.00 37.02 3.71
2826 4783 1.189752 TGCACTAGGAGCAGAAGGAG 58.810 55.000 7.91 0.00 37.02 3.69
2827 4784 1.871418 ATGCACTAGGAGCAGAAGGA 58.129 50.000 15.80 0.00 46.36 3.36
2828 4785 2.681848 CAAATGCACTAGGAGCAGAAGG 59.318 50.000 15.80 4.32 46.36 3.46
2829 4786 2.097142 GCAAATGCACTAGGAGCAGAAG 59.903 50.000 15.80 9.63 46.36 2.85
2830 4787 2.086869 GCAAATGCACTAGGAGCAGAA 58.913 47.619 15.80 0.00 46.36 3.02
2831 4788 1.679944 GGCAAATGCACTAGGAGCAGA 60.680 52.381 15.80 0.00 46.36 4.26
2832 4789 0.737219 GGCAAATGCACTAGGAGCAG 59.263 55.000 15.80 5.78 46.36 4.24
2834 4791 1.723870 CGGCAAATGCACTAGGAGC 59.276 57.895 7.80 0.00 44.36 4.70
2835 4792 0.745845 AGCGGCAAATGCACTAGGAG 60.746 55.000 7.80 0.00 44.36 3.69
2836 4793 1.026182 CAGCGGCAAATGCACTAGGA 61.026 55.000 7.80 0.00 44.36 2.94
2837 4794 1.430632 CAGCGGCAAATGCACTAGG 59.569 57.895 7.80 0.00 44.36 3.02
2838 4795 1.430632 CCAGCGGCAAATGCACTAG 59.569 57.895 7.80 0.00 44.36 2.57
2839 4796 3.589579 CCAGCGGCAAATGCACTA 58.410 55.556 7.80 0.00 44.36 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.