Multiple sequence alignment - TraesCS7A01G111600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G111600 chr7A 100.000 2302 0 0 1 2302 68225665 68223364 0.000000e+00 4252
1 TraesCS7A01G111600 chr7A 77.233 347 61 10 1955 2292 68321619 68321282 1.090000e-43 187
2 TraesCS7A01G111600 chr1D 91.435 934 41 15 267 1192 467932718 467931816 0.000000e+00 1245
3 TraesCS7A01G111600 chr1D 89.744 663 41 11 543 1192 27684639 27683991 0.000000e+00 822
4 TraesCS7A01G111600 chr1D 94.723 379 20 0 1190 1568 27681812 27681434 7.080000e-165 590
5 TraesCS7A01G111600 chr3B 89.829 934 64 15 261 1192 766065107 766066011 0.000000e+00 1170
6 TraesCS7A01G111600 chr3B 90.380 447 24 6 754 1192 750995513 750995078 9.230000e-159 569
7 TraesCS7A01G111600 chr3B 80.962 520 57 28 267 760 750996335 750995832 7.770000e-100 374
8 TraesCS7A01G111600 chr3A 87.177 967 68 27 267 1191 57559730 57560682 0.000000e+00 1048
9 TraesCS7A01G111600 chr3A 92.500 440 21 3 754 1192 714380591 714381019 9.030000e-174 619
10 TraesCS7A01G111600 chr3A 94.681 376 18 1 1184 1559 60218925 60219298 1.190000e-162 582
11 TraesCS7A01G111600 chr3A 94.430 377 19 1 1184 1560 57562860 57563234 1.530000e-161 579
12 TraesCS7A01G111600 chr3A 81.560 564 62 27 471 1004 652903372 652902821 5.880000e-116 427
13 TraesCS7A01G111600 chr5A 86.044 953 84 28 266 1192 456679994 456679065 0.000000e+00 977
14 TraesCS7A01G111600 chr5A 85.053 950 83 29 267 1192 523078751 523079665 0.000000e+00 913
15 TraesCS7A01G111600 chr5A 95.745 376 16 0 1184 1559 523080898 523081273 7.030000e-170 606
16 TraesCS7A01G111600 chr5A 84.800 500 50 18 526 1004 562412348 562411854 1.600000e-131 479
17 TraesCS7A01G111600 chr6B 85.579 950 89 25 265 1192 16263723 16264646 0.000000e+00 952
18 TraesCS7A01G111600 chr6B 95.479 376 17 0 1184 1559 16265881 16266256 3.270000e-168 601
19 TraesCS7A01G111600 chr4A 85.115 954 76 30 263 1192 19533354 19534265 0.000000e+00 915
20 TraesCS7A01G111600 chr4A 85.843 890 76 28 332 1192 650656927 650657795 0.000000e+00 900
21 TraesCS7A01G111600 chr4A 94.444 378 20 1 1184 1560 650659972 650660349 4.260000e-162 580
22 TraesCS7A01G111600 chr4A 93.801 371 22 1 1184 1554 19536440 19536809 7.180000e-155 556
23 TraesCS7A01G111600 chr7D 87.351 672 63 14 1640 2302 64433901 64433243 0.000000e+00 750
24 TraesCS7A01G111600 chr7D 75.796 471 75 19 1852 2292 64469130 64468669 3.880000e-48 202
25 TraesCS7A01G111600 chr7B 90.993 433 36 3 1870 2302 5962397 5961968 4.260000e-162 580
26 TraesCS7A01G111600 chr7B 80.377 265 40 10 1957 2219 6035518 6035264 8.390000e-45 191
27 TraesCS7A01G111600 chr1A 94.340 371 19 1 1190 1560 537446959 537447327 3.320000e-158 568
28 TraesCS7A01G111600 chr1A 100.000 58 0 0 1134 1191 537444706 537444763 8.700000e-20 108
29 TraesCS7A01G111600 chr2B 93.085 376 22 1 1184 1559 39939478 39939849 4.320000e-152 547
30 TraesCS7A01G111600 chr2B 79.319 793 93 35 267 1004 28012048 28011272 7.390000e-135 490
31 TraesCS7A01G111600 chr2B 83.696 552 50 24 267 791 39937779 39938317 3.440000e-133 484
32 TraesCS7A01G111600 chr2B 81.560 564 63 19 468 1004 28078038 28078587 5.880000e-116 427
33 TraesCS7A01G111600 chr2B 85.915 142 18 2 266 407 28077808 28077947 1.420000e-32 150
34 TraesCS7A01G111600 chr4D 80.000 785 102 36 264 1004 435008546 435007773 1.570000e-146 529
35 TraesCS7A01G111600 chr6D 79.849 794 82 41 267 1004 457553180 457552409 2.040000e-140 508
36 TraesCS7A01G111600 chr2A 77.340 203 43 2 1642 1841 482753078 482752876 1.440000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G111600 chr7A 68223364 68225665 2301 True 4252.0 4252 100.0000 1 2302 1 chr7A.!!$R1 2301
1 TraesCS7A01G111600 chr1D 467931816 467932718 902 True 1245.0 1245 91.4350 267 1192 1 chr1D.!!$R1 925
2 TraesCS7A01G111600 chr1D 27681434 27684639 3205 True 706.0 822 92.2335 543 1568 2 chr1D.!!$R2 1025
3 TraesCS7A01G111600 chr3B 766065107 766066011 904 False 1170.0 1170 89.8290 261 1192 1 chr3B.!!$F1 931
4 TraesCS7A01G111600 chr3B 750995078 750996335 1257 True 471.5 569 85.6710 267 1192 2 chr3B.!!$R1 925
5 TraesCS7A01G111600 chr3A 57559730 57563234 3504 False 813.5 1048 90.8035 267 1560 2 chr3A.!!$F3 1293
6 TraesCS7A01G111600 chr3A 652902821 652903372 551 True 427.0 427 81.5600 471 1004 1 chr3A.!!$R1 533
7 TraesCS7A01G111600 chr5A 456679065 456679994 929 True 977.0 977 86.0440 266 1192 1 chr5A.!!$R1 926
8 TraesCS7A01G111600 chr5A 523078751 523081273 2522 False 759.5 913 90.3990 267 1559 2 chr5A.!!$F1 1292
9 TraesCS7A01G111600 chr6B 16263723 16266256 2533 False 776.5 952 90.5290 265 1559 2 chr6B.!!$F1 1294
10 TraesCS7A01G111600 chr4A 650656927 650660349 3422 False 740.0 900 90.1435 332 1560 2 chr4A.!!$F2 1228
11 TraesCS7A01G111600 chr4A 19533354 19536809 3455 False 735.5 915 89.4580 263 1554 2 chr4A.!!$F1 1291
12 TraesCS7A01G111600 chr7D 64433243 64433901 658 True 750.0 750 87.3510 1640 2302 1 chr7D.!!$R1 662
13 TraesCS7A01G111600 chr1A 537444706 537447327 2621 False 338.0 568 97.1700 1134 1560 2 chr1A.!!$F1 426
14 TraesCS7A01G111600 chr2B 39937779 39939849 2070 False 515.5 547 88.3905 267 1559 2 chr2B.!!$F2 1292
15 TraesCS7A01G111600 chr2B 28011272 28012048 776 True 490.0 490 79.3190 267 1004 1 chr2B.!!$R1 737
16 TraesCS7A01G111600 chr2B 28077808 28078587 779 False 288.5 427 83.7375 266 1004 2 chr2B.!!$F1 738
17 TraesCS7A01G111600 chr4D 435007773 435008546 773 True 529.0 529 80.0000 264 1004 1 chr4D.!!$R1 740
18 TraesCS7A01G111600 chr6D 457552409 457553180 771 True 508.0 508 79.8490 267 1004 1 chr6D.!!$R1 737

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
177 178 0.319555 GGAGCACGTGTTACAGCTGA 60.32 55.0 23.35 0.48 37.48 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1621 4293 0.033503 TGGGGTCAGTCTAGATCGCA 60.034 55.0 0.0 0.0 38.99 5.1 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.413309 AGAGCATGGACAATAGTATAGCC 57.587 43.478 0.00 0.00 0.00 3.93
25 26 4.840680 AGAGCATGGACAATAGTATAGCCA 59.159 41.667 0.00 0.00 0.00 4.75
26 27 5.046735 AGAGCATGGACAATAGTATAGCCAG 60.047 44.000 0.00 0.00 0.00 4.85
27 28 3.686726 GCATGGACAATAGTATAGCCAGC 59.313 47.826 0.00 0.00 0.00 4.85
28 29 4.564406 GCATGGACAATAGTATAGCCAGCT 60.564 45.833 0.00 0.00 0.00 4.24
29 30 4.607293 TGGACAATAGTATAGCCAGCTG 57.393 45.455 6.78 6.78 0.00 4.24
30 31 3.244215 TGGACAATAGTATAGCCAGCTGC 60.244 47.826 8.66 3.91 41.71 5.25
31 32 3.244215 GGACAATAGTATAGCCAGCTGCA 60.244 47.826 8.66 0.00 44.83 4.41
32 33 3.993081 GACAATAGTATAGCCAGCTGCAG 59.007 47.826 10.11 10.11 44.83 4.41
33 34 2.740981 CAATAGTATAGCCAGCTGCAGC 59.259 50.000 31.53 31.53 44.83 5.25
34 35 0.681733 TAGTATAGCCAGCTGCAGCC 59.318 55.000 34.39 19.70 44.83 4.85
35 36 1.053264 AGTATAGCCAGCTGCAGCCT 61.053 55.000 34.39 25.43 44.83 4.58
36 37 0.883814 GTATAGCCAGCTGCAGCCTG 60.884 60.000 34.39 27.82 44.83 4.85
37 38 2.671370 TATAGCCAGCTGCAGCCTGC 62.671 60.000 34.39 32.95 44.83 4.85
53 54 2.708051 CCTGCAGGCTATATGATGGTG 58.292 52.381 22.33 0.00 0.00 4.17
54 55 2.039480 CCTGCAGGCTATATGATGGTGT 59.961 50.000 22.33 0.00 0.00 4.16
55 56 3.332919 CTGCAGGCTATATGATGGTGTC 58.667 50.000 5.57 0.00 0.00 3.67
56 57 2.705127 TGCAGGCTATATGATGGTGTCA 59.295 45.455 0.00 0.00 42.06 3.58
58 59 3.688185 GCAGGCTATATGATGGTGTCATG 59.312 47.826 1.01 0.00 46.85 3.07
59 60 4.805272 GCAGGCTATATGATGGTGTCATGT 60.805 45.833 1.01 0.00 46.85 3.21
60 61 5.311265 CAGGCTATATGATGGTGTCATGTT 58.689 41.667 1.01 0.00 46.85 2.71
61 62 5.766670 CAGGCTATATGATGGTGTCATGTTT 59.233 40.000 1.01 0.00 46.85 2.83
62 63 6.263842 CAGGCTATATGATGGTGTCATGTTTT 59.736 38.462 1.01 0.00 46.85 2.43
63 64 6.835488 AGGCTATATGATGGTGTCATGTTTTT 59.165 34.615 1.01 0.00 46.85 1.94
84 85 6.774354 TTTTATAGCGAAGTTTATAGCCGG 57.226 37.500 0.00 0.00 0.00 6.13
85 86 5.458041 TTATAGCGAAGTTTATAGCCGGT 57.542 39.130 1.90 0.00 35.17 5.28
86 87 1.935933 AGCGAAGTTTATAGCCGGTG 58.064 50.000 1.90 0.00 0.00 4.94
87 88 1.479323 AGCGAAGTTTATAGCCGGTGA 59.521 47.619 1.90 0.00 0.00 4.02
88 89 2.102588 AGCGAAGTTTATAGCCGGTGAT 59.897 45.455 1.90 0.00 0.00 3.06
89 90 2.870411 GCGAAGTTTATAGCCGGTGATT 59.130 45.455 1.90 0.00 0.00 2.57
90 91 4.053295 GCGAAGTTTATAGCCGGTGATTA 58.947 43.478 1.90 0.00 0.00 1.75
91 92 4.689345 GCGAAGTTTATAGCCGGTGATTAT 59.311 41.667 1.90 0.00 0.00 1.28
92 93 5.865552 GCGAAGTTTATAGCCGGTGATTATA 59.134 40.000 1.90 0.00 0.00 0.98
93 94 6.366877 GCGAAGTTTATAGCCGGTGATTATAA 59.633 38.462 1.90 4.74 0.00 0.98
94 95 7.064253 GCGAAGTTTATAGCCGGTGATTATAAT 59.936 37.037 1.90 0.00 0.00 1.28
95 96 9.577110 CGAAGTTTATAGCCGGTGATTATAATA 57.423 33.333 1.90 0.00 0.00 0.98
100 101 9.661563 TTTATAGCCGGTGATTATAATAGTTGG 57.338 33.333 1.90 0.47 0.00 3.77
101 102 5.818678 AGCCGGTGATTATAATAGTTGGA 57.181 39.130 1.90 0.00 0.00 3.53
102 103 6.374417 AGCCGGTGATTATAATAGTTGGAT 57.626 37.500 1.90 0.00 0.00 3.41
103 104 7.490657 AGCCGGTGATTATAATAGTTGGATA 57.509 36.000 1.90 0.00 0.00 2.59
104 105 7.913789 AGCCGGTGATTATAATAGTTGGATAA 58.086 34.615 1.90 0.00 0.00 1.75
105 106 8.380099 AGCCGGTGATTATAATAGTTGGATAAA 58.620 33.333 1.90 0.00 0.00 1.40
106 107 9.174166 GCCGGTGATTATAATAGTTGGATAAAT 57.826 33.333 1.90 0.00 0.00 1.40
133 134 8.918202 TGTACTATTTTATTGATGATGGTCCC 57.082 34.615 0.00 0.00 0.00 4.46
134 135 8.723365 TGTACTATTTTATTGATGATGGTCCCT 58.277 33.333 0.00 0.00 0.00 4.20
135 136 9.220767 GTACTATTTTATTGATGATGGTCCCTC 57.779 37.037 0.00 0.00 0.00 4.30
136 137 8.050316 ACTATTTTATTGATGATGGTCCCTCT 57.950 34.615 0.00 0.00 0.00 3.69
137 138 8.160106 ACTATTTTATTGATGATGGTCCCTCTC 58.840 37.037 0.00 0.00 0.00 3.20
138 139 5.974156 TTTATTGATGATGGTCCCTCTCA 57.026 39.130 0.00 0.00 0.00 3.27
139 140 3.853355 ATTGATGATGGTCCCTCTCAC 57.147 47.619 0.00 0.00 0.00 3.51
140 141 2.557555 TGATGATGGTCCCTCTCACT 57.442 50.000 0.00 0.00 0.00 3.41
141 142 2.392662 TGATGATGGTCCCTCTCACTC 58.607 52.381 0.00 0.00 0.00 3.51
142 143 2.023598 TGATGATGGTCCCTCTCACTCT 60.024 50.000 0.00 0.00 0.00 3.24
143 144 1.857965 TGATGGTCCCTCTCACTCTG 58.142 55.000 0.00 0.00 0.00 3.35
144 145 1.077828 TGATGGTCCCTCTCACTCTGT 59.922 52.381 0.00 0.00 0.00 3.41
145 146 1.754226 GATGGTCCCTCTCACTCTGTC 59.246 57.143 0.00 0.00 0.00 3.51
146 147 0.482887 TGGTCCCTCTCACTCTGTCA 59.517 55.000 0.00 0.00 0.00 3.58
147 148 0.892063 GGTCCCTCTCACTCTGTCAC 59.108 60.000 0.00 0.00 0.00 3.67
148 149 0.523966 GTCCCTCTCACTCTGTCACG 59.476 60.000 0.00 0.00 0.00 4.35
149 150 0.609406 TCCCTCTCACTCTGTCACGG 60.609 60.000 0.00 0.00 0.00 4.94
150 151 0.609406 CCCTCTCACTCTGTCACGGA 60.609 60.000 0.00 0.00 0.00 4.69
151 152 0.808125 CCTCTCACTCTGTCACGGAG 59.192 60.000 12.50 12.50 42.15 4.63
153 154 1.466950 CTCTCACTCTGTCACGGAGTC 59.533 57.143 16.99 0.00 45.80 3.36
154 155 1.072489 TCTCACTCTGTCACGGAGTCT 59.928 52.381 16.99 0.00 45.80 3.24
155 156 1.466950 CTCACTCTGTCACGGAGTCTC 59.533 57.143 16.99 0.00 45.80 3.36
156 157 1.072489 TCACTCTGTCACGGAGTCTCT 59.928 52.381 16.99 0.00 45.80 3.10
157 158 2.302157 TCACTCTGTCACGGAGTCTCTA 59.698 50.000 16.99 0.13 45.80 2.43
158 159 2.675844 CACTCTGTCACGGAGTCTCTAG 59.324 54.545 16.99 1.36 45.80 2.43
159 160 2.285083 CTCTGTCACGGAGTCTCTAGG 58.715 57.143 5.34 0.00 41.61 3.02
160 161 1.907255 TCTGTCACGGAGTCTCTAGGA 59.093 52.381 0.00 0.00 41.61 2.94
161 162 2.093394 TCTGTCACGGAGTCTCTAGGAG 60.093 54.545 0.00 0.00 41.61 3.69
162 163 1.018910 GTCACGGAGTCTCTAGGAGC 58.981 60.000 0.00 0.00 41.61 4.70
163 164 0.618981 TCACGGAGTCTCTAGGAGCA 59.381 55.000 0.00 0.00 41.61 4.26
164 165 0.736053 CACGGAGTCTCTAGGAGCAC 59.264 60.000 0.00 0.00 41.61 4.40
165 166 0.745128 ACGGAGTCTCTAGGAGCACG 60.745 60.000 0.00 0.00 29.74 5.34
166 167 0.745128 CGGAGTCTCTAGGAGCACGT 60.745 60.000 0.00 0.00 0.00 4.49
167 168 0.736053 GGAGTCTCTAGGAGCACGTG 59.264 60.000 12.28 12.28 0.00 4.49
168 169 1.455248 GAGTCTCTAGGAGCACGTGT 58.545 55.000 18.38 3.69 0.00 4.49
169 170 1.813786 GAGTCTCTAGGAGCACGTGTT 59.186 52.381 18.38 11.90 0.00 3.32
170 171 3.008330 GAGTCTCTAGGAGCACGTGTTA 58.992 50.000 18.38 4.44 0.00 2.41
171 172 2.748532 AGTCTCTAGGAGCACGTGTTAC 59.251 50.000 18.38 12.67 0.00 2.50
172 173 2.486982 GTCTCTAGGAGCACGTGTTACA 59.513 50.000 17.52 2.23 0.00 2.41
173 174 2.747989 TCTCTAGGAGCACGTGTTACAG 59.252 50.000 17.52 11.71 0.00 2.74
174 175 1.201647 TCTAGGAGCACGTGTTACAGC 59.798 52.381 17.52 0.76 0.00 4.40
175 176 1.202582 CTAGGAGCACGTGTTACAGCT 59.797 52.381 17.52 6.45 40.60 4.24
176 177 0.319900 AGGAGCACGTGTTACAGCTG 60.320 55.000 17.52 13.48 37.48 4.24
177 178 0.319555 GGAGCACGTGTTACAGCTGA 60.320 55.000 23.35 0.48 37.48 4.26
178 179 1.673033 GGAGCACGTGTTACAGCTGAT 60.673 52.381 23.35 7.41 37.48 2.90
179 180 2.069273 GAGCACGTGTTACAGCTGATT 58.931 47.619 23.35 0.27 37.48 2.57
180 181 3.250744 GAGCACGTGTTACAGCTGATTA 58.749 45.455 23.35 0.00 37.48 1.75
181 182 3.861840 AGCACGTGTTACAGCTGATTAT 58.138 40.909 23.35 0.00 35.72 1.28
182 183 4.253685 AGCACGTGTTACAGCTGATTATT 58.746 39.130 23.35 0.00 35.72 1.40
183 184 5.416083 AGCACGTGTTACAGCTGATTATTA 58.584 37.500 23.35 0.00 35.72 0.98
184 185 5.872617 AGCACGTGTTACAGCTGATTATTAA 59.127 36.000 23.35 5.07 35.72 1.40
185 186 6.538742 AGCACGTGTTACAGCTGATTATTAAT 59.461 34.615 23.35 0.00 35.72 1.40
186 187 7.065803 AGCACGTGTTACAGCTGATTATTAATT 59.934 33.333 23.35 0.00 35.72 1.40
187 188 8.332464 GCACGTGTTACAGCTGATTATTAATTA 58.668 33.333 23.35 0.00 0.00 1.40
188 189 9.849607 CACGTGTTACAGCTGATTATTAATTAG 57.150 33.333 23.35 6.00 0.00 1.73
189 190 9.595823 ACGTGTTACAGCTGATTATTAATTAGT 57.404 29.630 23.35 6.57 0.00 2.24
196 197 8.725148 ACAGCTGATTATTAATTAGTAGCATGC 58.275 33.333 23.35 10.51 32.64 4.06
197 198 8.724229 CAGCTGATTATTAATTAGTAGCATGCA 58.276 33.333 21.98 2.77 32.64 3.96
198 199 9.458727 AGCTGATTATTAATTAGTAGCATGCAT 57.541 29.630 21.98 7.92 32.64 3.96
199 200 9.713740 GCTGATTATTAATTAGTAGCATGCATC 57.286 33.333 21.98 12.14 0.00 3.91
206 207 9.790344 ATTAATTAGTAGCATGCATCTTCTCTT 57.210 29.630 21.98 6.10 0.00 2.85
207 208 9.618890 TTAATTAGTAGCATGCATCTTCTCTTT 57.381 29.630 21.98 4.88 0.00 2.52
208 209 7.727331 ATTAGTAGCATGCATCTTCTCTTTC 57.273 36.000 21.98 0.00 0.00 2.62
209 210 4.450053 AGTAGCATGCATCTTCTCTTTCC 58.550 43.478 21.98 0.00 0.00 3.13
210 211 3.648507 AGCATGCATCTTCTCTTTCCT 57.351 42.857 21.98 0.00 0.00 3.36
211 212 3.543665 AGCATGCATCTTCTCTTTCCTC 58.456 45.455 21.98 0.00 0.00 3.71
212 213 3.200385 AGCATGCATCTTCTCTTTCCTCT 59.800 43.478 21.98 0.00 0.00 3.69
213 214 3.946558 GCATGCATCTTCTCTTTCCTCTT 59.053 43.478 14.21 0.00 0.00 2.85
214 215 4.035441 GCATGCATCTTCTCTTTCCTCTTC 59.965 45.833 14.21 0.00 0.00 2.87
215 216 4.897509 TGCATCTTCTCTTTCCTCTTCA 57.102 40.909 0.00 0.00 0.00 3.02
216 217 5.432680 TGCATCTTCTCTTTCCTCTTCAT 57.567 39.130 0.00 0.00 0.00 2.57
217 218 5.426504 TGCATCTTCTCTTTCCTCTTCATC 58.573 41.667 0.00 0.00 0.00 2.92
218 219 4.815846 GCATCTTCTCTTTCCTCTTCATCC 59.184 45.833 0.00 0.00 0.00 3.51
219 220 5.396660 GCATCTTCTCTTTCCTCTTCATCCT 60.397 44.000 0.00 0.00 0.00 3.24
220 221 5.930837 TCTTCTCTTTCCTCTTCATCCTC 57.069 43.478 0.00 0.00 0.00 3.71
221 222 5.588845 TCTTCTCTTTCCTCTTCATCCTCT 58.411 41.667 0.00 0.00 0.00 3.69
222 223 6.022315 TCTTCTCTTTCCTCTTCATCCTCTT 58.978 40.000 0.00 0.00 0.00 2.85
223 224 5.930837 TCTCTTTCCTCTTCATCCTCTTC 57.069 43.478 0.00 0.00 0.00 2.87
224 225 4.714308 TCTCTTTCCTCTTCATCCTCTTCC 59.286 45.833 0.00 0.00 0.00 3.46
225 226 4.429505 TCTTTCCTCTTCATCCTCTTCCA 58.570 43.478 0.00 0.00 0.00 3.53
226 227 4.846367 TCTTTCCTCTTCATCCTCTTCCAA 59.154 41.667 0.00 0.00 0.00 3.53
227 228 4.559862 TTCCTCTTCATCCTCTTCCAAC 57.440 45.455 0.00 0.00 0.00 3.77
228 229 3.796111 TCCTCTTCATCCTCTTCCAACT 58.204 45.455 0.00 0.00 0.00 3.16
229 230 3.772025 TCCTCTTCATCCTCTTCCAACTC 59.228 47.826 0.00 0.00 0.00 3.01
230 231 3.517100 CCTCTTCATCCTCTTCCAACTCA 59.483 47.826 0.00 0.00 0.00 3.41
231 232 4.382901 CCTCTTCATCCTCTTCCAACTCAG 60.383 50.000 0.00 0.00 0.00 3.35
232 233 3.055530 TCTTCATCCTCTTCCAACTCAGC 60.056 47.826 0.00 0.00 0.00 4.26
233 234 2.259917 TCATCCTCTTCCAACTCAGCA 58.740 47.619 0.00 0.00 0.00 4.41
234 235 2.639347 TCATCCTCTTCCAACTCAGCAA 59.361 45.455 0.00 0.00 0.00 3.91
235 236 3.072915 TCATCCTCTTCCAACTCAGCAAA 59.927 43.478 0.00 0.00 0.00 3.68
236 237 3.576078 TCCTCTTCCAACTCAGCAAAA 57.424 42.857 0.00 0.00 0.00 2.44
237 238 3.897239 TCCTCTTCCAACTCAGCAAAAA 58.103 40.909 0.00 0.00 0.00 1.94
270 271 1.348036 AGTCTTACAACCTGCCCACTC 59.652 52.381 0.00 0.00 0.00 3.51
389 398 0.531974 CACAACCAGTACGCAGGTGT 60.532 55.000 8.19 3.50 38.37 4.16
430 461 0.395586 TCTCAGCCTCTCTGCCTCTC 60.396 60.000 0.00 0.00 42.56 3.20
442 473 1.454111 GCCTCTCCCTCGCAGACTA 60.454 63.158 0.00 0.00 0.00 2.59
607 697 1.602237 CGGCACCACCACTCCTTAT 59.398 57.895 0.00 0.00 39.03 1.73
659 770 1.740296 GAGCAAGTTAGCCGGCGAA 60.740 57.895 23.20 20.88 34.23 4.70
729 850 4.245660 TCTGAATCCTTACAAGTTGCGAG 58.754 43.478 1.81 0.91 0.00 5.03
730 851 2.742053 TGAATCCTTACAAGTTGCGAGC 59.258 45.455 1.81 0.00 0.00 5.03
752 876 5.180117 AGCTAAATCGATTCAAATCATCCCG 59.820 40.000 11.83 0.00 35.11 5.14
766 1215 6.463053 AATCATCCCGATTTTATTCCCCTA 57.537 37.500 0.00 0.00 41.83 3.53
795 1245 4.935808 ACCTAGGTCATCGTTCATTGAAAC 59.064 41.667 9.21 0.00 0.00 2.78
847 1312 9.228949 GGCTGAATATTTCACTGAAGATCATAT 57.771 33.333 0.00 0.00 35.46 1.78
910 1381 8.106247 TGGTTTCTAATTTAGTAGGCAAGTTG 57.894 34.615 0.00 0.00 0.00 3.16
1124 1595 4.066490 CCTTTGCCAATGCTTGAAATTGA 58.934 39.130 0.00 0.00 37.22 2.57
1125 1596 4.515944 CCTTTGCCAATGCTTGAAATTGAA 59.484 37.500 0.00 0.00 37.22 2.69
1126 1597 5.421212 TTTGCCAATGCTTGAAATTGAAC 57.579 34.783 0.00 0.00 37.22 3.18
1127 1598 4.069300 TGCCAATGCTTGAAATTGAACA 57.931 36.364 0.00 0.00 37.22 3.18
1128 1599 4.059511 TGCCAATGCTTGAAATTGAACAG 58.940 39.130 0.00 0.00 37.22 3.16
1129 1600 3.120442 GCCAATGCTTGAAATTGAACAGC 60.120 43.478 0.00 0.00 37.22 4.40
1130 1601 3.434299 CCAATGCTTGAAATTGAACAGCC 59.566 43.478 0.00 0.00 37.22 4.85
1131 1602 4.059511 CAATGCTTGAAATTGAACAGCCA 58.940 39.130 0.00 0.00 37.22 4.75
1132 1603 3.096489 TGCTTGAAATTGAACAGCCAC 57.904 42.857 0.00 0.00 0.00 5.01
1227 3898 8.434392 ACTTGTTAGTTAACATAGAGGGTGAAA 58.566 33.333 8.61 0.00 44.72 2.69
1250 3921 5.843673 TTCTGGAGAAGTACAGCTATGAG 57.156 43.478 0.00 0.00 34.76 2.90
1251 3922 3.634448 TCTGGAGAAGTACAGCTATGAGC 59.366 47.826 0.00 0.00 42.84 4.26
1298 3969 4.394920 GTGAAGGAACGGAATGCTGATTTA 59.605 41.667 0.00 0.00 0.00 1.40
1320 3991 9.609346 ATTTATAGTATGTAACTCCACACAACC 57.391 33.333 0.00 0.00 39.80 3.77
1405 4076 4.289238 TGGCTTATTTTGGTCTCGGTAA 57.711 40.909 0.00 0.00 0.00 2.85
1448 4119 6.292168 GCATTTGCTCATCTTGTATTCAATGC 60.292 38.462 0.00 0.00 38.21 3.56
1462 4133 1.872952 TCAATGCGAACAGAAGGTGTG 59.127 47.619 0.00 0.00 40.26 3.82
1464 4135 1.237285 ATGCGAACAGAAGGTGTGGC 61.237 55.000 0.00 0.00 40.26 5.01
1529 4200 0.037590 TATTGTGCTCTTTGGCCCGT 59.962 50.000 0.00 0.00 0.00 5.28
1560 4232 2.032528 CCAAGCTCCGCCACTGAA 59.967 61.111 0.00 0.00 0.00 3.02
1563 4235 1.078143 AAGCTCCGCCACTGAATCC 60.078 57.895 0.00 0.00 0.00 3.01
1568 4240 2.499205 CGCCACTGAATCCGCCTA 59.501 61.111 0.00 0.00 0.00 3.93
1569 4241 1.883084 CGCCACTGAATCCGCCTAC 60.883 63.158 0.00 0.00 0.00 3.18
1570 4242 1.220749 GCCACTGAATCCGCCTACA 59.779 57.895 0.00 0.00 0.00 2.74
1571 4243 0.392461 GCCACTGAATCCGCCTACAA 60.392 55.000 0.00 0.00 0.00 2.41
1572 4244 1.747206 GCCACTGAATCCGCCTACAAT 60.747 52.381 0.00 0.00 0.00 2.71
1573 4245 2.484770 GCCACTGAATCCGCCTACAATA 60.485 50.000 0.00 0.00 0.00 1.90
1574 4246 3.804036 CCACTGAATCCGCCTACAATAA 58.196 45.455 0.00 0.00 0.00 1.40
1575 4247 4.389374 CCACTGAATCCGCCTACAATAAT 58.611 43.478 0.00 0.00 0.00 1.28
1576 4248 4.821805 CCACTGAATCCGCCTACAATAATT 59.178 41.667 0.00 0.00 0.00 1.40
1577 4249 5.995282 CCACTGAATCCGCCTACAATAATTA 59.005 40.000 0.00 0.00 0.00 1.40
1578 4250 6.655003 CCACTGAATCCGCCTACAATAATTAT 59.345 38.462 0.00 0.00 0.00 1.28
1579 4251 7.822334 CCACTGAATCCGCCTACAATAATTATA 59.178 37.037 0.00 0.00 0.00 0.98
1580 4252 9.214957 CACTGAATCCGCCTACAATAATTATAA 57.785 33.333 0.00 0.00 0.00 0.98
1581 4253 9.216117 ACTGAATCCGCCTACAATAATTATAAC 57.784 33.333 0.00 0.00 0.00 1.89
1582 4254 9.214957 CTGAATCCGCCTACAATAATTATAACA 57.785 33.333 0.00 0.00 0.00 2.41
1583 4255 8.995220 TGAATCCGCCTACAATAATTATAACAC 58.005 33.333 0.00 0.00 0.00 3.32
1584 4256 9.216117 GAATCCGCCTACAATAATTATAACACT 57.784 33.333 0.00 0.00 0.00 3.55
1585 4257 8.773404 ATCCGCCTACAATAATTATAACACTC 57.227 34.615 0.00 0.00 0.00 3.51
1586 4258 7.959175 TCCGCCTACAATAATTATAACACTCT 58.041 34.615 0.00 0.00 0.00 3.24
1587 4259 7.870954 TCCGCCTACAATAATTATAACACTCTG 59.129 37.037 0.00 0.00 0.00 3.35
1588 4260 7.117812 CCGCCTACAATAATTATAACACTCTGG 59.882 40.741 0.00 0.00 0.00 3.86
1589 4261 7.870954 CGCCTACAATAATTATAACACTCTGGA 59.129 37.037 0.00 0.00 0.00 3.86
1590 4262 8.989980 GCCTACAATAATTATAACACTCTGGAC 58.010 37.037 0.00 0.00 0.00 4.02
1591 4263 9.193133 CCTACAATAATTATAACACTCTGGACG 57.807 37.037 0.00 0.00 0.00 4.79
1592 4264 7.478520 ACAATAATTATAACACTCTGGACGC 57.521 36.000 0.00 0.00 0.00 5.19
1593 4265 7.045416 ACAATAATTATAACACTCTGGACGCA 58.955 34.615 0.00 0.00 0.00 5.24
1594 4266 7.011109 ACAATAATTATAACACTCTGGACGCAC 59.989 37.037 0.00 0.00 0.00 5.34
1595 4267 2.953466 TATAACACTCTGGACGCACC 57.047 50.000 0.00 0.00 39.54 5.01
1596 4268 0.108804 ATAACACTCTGGACGCACCG 60.109 55.000 0.00 0.00 42.61 4.94
1597 4269 2.758770 TAACACTCTGGACGCACCGC 62.759 60.000 0.00 0.00 42.61 5.68
1605 4277 4.729856 GACGCACCGCCGGTTACT 62.730 66.667 5.76 0.00 31.02 2.24
1616 4288 3.520187 CGGTTACTGGCCGTTACTT 57.480 52.632 13.68 0.00 43.84 2.24
1617 4289 1.353076 CGGTTACTGGCCGTTACTTC 58.647 55.000 13.68 1.94 43.84 3.01
1618 4290 1.067354 CGGTTACTGGCCGTTACTTCT 60.067 52.381 13.68 0.00 43.84 2.85
1619 4291 2.344025 GGTTACTGGCCGTTACTTCTG 58.656 52.381 13.68 0.00 0.00 3.02
1620 4292 2.028748 GGTTACTGGCCGTTACTTCTGA 60.029 50.000 13.68 0.00 0.00 3.27
1621 4293 3.369157 GGTTACTGGCCGTTACTTCTGAT 60.369 47.826 13.68 0.00 0.00 2.90
1622 4294 2.386661 ACTGGCCGTTACTTCTGATG 57.613 50.000 0.00 0.00 0.00 3.07
1623 4295 1.009829 CTGGCCGTTACTTCTGATGC 58.990 55.000 0.00 0.00 0.00 3.91
1624 4296 0.739462 TGGCCGTTACTTCTGATGCG 60.739 55.000 0.00 0.00 0.00 4.73
1625 4297 0.459585 GGCCGTTACTTCTGATGCGA 60.460 55.000 0.00 0.00 0.00 5.10
1626 4298 1.571919 GCCGTTACTTCTGATGCGAT 58.428 50.000 0.00 0.00 0.00 4.58
1627 4299 1.523095 GCCGTTACTTCTGATGCGATC 59.477 52.381 0.00 0.00 0.00 3.69
1628 4300 2.799917 GCCGTTACTTCTGATGCGATCT 60.800 50.000 0.00 0.00 0.00 2.75
1629 4301 3.550233 GCCGTTACTTCTGATGCGATCTA 60.550 47.826 0.00 0.00 0.00 1.98
1630 4302 4.222886 CCGTTACTTCTGATGCGATCTAG 58.777 47.826 0.00 0.00 0.00 2.43
1631 4303 4.023963 CCGTTACTTCTGATGCGATCTAGA 60.024 45.833 0.00 0.00 0.00 2.43
1632 4304 4.907010 CGTTACTTCTGATGCGATCTAGAC 59.093 45.833 0.00 0.00 0.00 2.59
1633 4305 5.277586 CGTTACTTCTGATGCGATCTAGACT 60.278 44.000 0.00 0.00 0.00 3.24
1634 4306 4.566545 ACTTCTGATGCGATCTAGACTG 57.433 45.455 0.00 0.00 0.00 3.51
1635 4307 4.203226 ACTTCTGATGCGATCTAGACTGA 58.797 43.478 0.00 0.00 0.00 3.41
1636 4308 4.036262 ACTTCTGATGCGATCTAGACTGAC 59.964 45.833 0.00 0.00 0.00 3.51
1637 4309 2.881513 TCTGATGCGATCTAGACTGACC 59.118 50.000 0.00 0.00 0.00 4.02
1638 4310 1.957177 TGATGCGATCTAGACTGACCC 59.043 52.381 0.00 0.00 0.00 4.46
1646 4318 3.019799 TCTAGACTGACCCCACAGATC 57.980 52.381 0.00 0.00 40.63 2.75
1651 4323 1.988107 ACTGACCCCACAGATCAACAT 59.012 47.619 0.00 0.00 40.63 2.71
1656 4328 4.042809 TGACCCCACAGATCAACATTAGTT 59.957 41.667 0.00 0.00 38.88 2.24
1659 4331 5.476945 ACCCCACAGATCAACATTAGTTTTC 59.523 40.000 0.00 0.00 35.28 2.29
1660 4332 5.105756 CCCCACAGATCAACATTAGTTTTCC 60.106 44.000 0.00 0.00 35.28 3.13
1666 4338 2.227865 TCAACATTAGTTTTCCCTGCGC 59.772 45.455 0.00 0.00 35.28 6.09
1668 4340 1.539827 ACATTAGTTTTCCCTGCGCAC 59.460 47.619 5.66 0.00 0.00 5.34
1673 4345 1.067250 TTTTCCCTGCGCACTTTGC 59.933 52.632 5.66 0.00 40.69 3.68
1682 4354 2.203480 GCACTTTGCCCCCACTCA 60.203 61.111 0.00 0.00 37.42 3.41
1686 4358 1.607178 CTTTGCCCCCACTCATGCA 60.607 57.895 0.00 0.00 0.00 3.96
1687 4359 1.880819 CTTTGCCCCCACTCATGCAC 61.881 60.000 0.00 0.00 32.63 4.57
1692 4364 1.676635 CCCCACTCATGCACACCTG 60.677 63.158 0.00 0.00 0.00 4.00
1694 4366 1.676635 CCACTCATGCACACCTGGG 60.677 63.158 0.00 0.00 0.00 4.45
1695 4367 1.676635 CACTCATGCACACCTGGGG 60.677 63.158 0.00 0.00 0.00 4.96
1707 4379 1.001641 CCTGGGGCCAACTTCTCAG 60.002 63.158 4.39 0.72 0.00 3.35
1709 4381 0.111253 CTGGGGCCAACTTCTCAGTT 59.889 55.000 4.39 0.00 44.72 3.16
1710 4382 0.555769 TGGGGCCAACTTCTCAGTTT 59.444 50.000 4.39 0.00 40.66 2.66
1720 4392 4.974645 ACTTCTCAGTTTGTCACCCATA 57.025 40.909 0.00 0.00 0.00 2.74
1730 4402 7.504238 TCAGTTTGTCACCCATACTAAAATTGT 59.496 33.333 0.00 0.00 34.12 2.71
1731 4403 8.141268 CAGTTTGTCACCCATACTAAAATTGTT 58.859 33.333 0.00 0.00 34.12 2.83
1756 4428 4.510038 AGTTGAGCATGCTTAACTTTGG 57.490 40.909 38.17 0.00 46.25 3.28
1759 4431 5.945784 AGTTGAGCATGCTTAACTTTGGATA 59.054 36.000 38.17 10.70 46.25 2.59
1765 4437 8.071177 AGCATGCTTAACTTTGGATATCTTTT 57.929 30.769 16.30 0.00 0.00 2.27
1776 4448 4.792068 TGGATATCTTTTCGAATGGGCTT 58.208 39.130 0.00 0.00 0.00 4.35
1779 4451 5.049129 GGATATCTTTTCGAATGGGCTTCAG 60.049 44.000 0.00 0.00 33.10 3.02
1780 4452 3.417069 TCTTTTCGAATGGGCTTCAGA 57.583 42.857 0.00 0.00 33.10 3.27
1838 4514 8.268850 TCATTTCTATTAAGCCAAGTTCTCAC 57.731 34.615 0.00 0.00 0.00 3.51
1839 4515 7.882791 TCATTTCTATTAAGCCAAGTTCTCACA 59.117 33.333 0.00 0.00 0.00 3.58
1840 4516 7.435068 TTTCTATTAAGCCAAGTTCTCACAC 57.565 36.000 0.00 0.00 0.00 3.82
1841 4517 6.360370 TCTATTAAGCCAAGTTCTCACACT 57.640 37.500 0.00 0.00 0.00 3.55
1842 4518 7.476540 TCTATTAAGCCAAGTTCTCACACTA 57.523 36.000 0.00 0.00 0.00 2.74
1843 4519 8.079211 TCTATTAAGCCAAGTTCTCACACTAT 57.921 34.615 0.00 0.00 0.00 2.12
1844 4520 8.540388 TCTATTAAGCCAAGTTCTCACACTATT 58.460 33.333 0.00 0.00 0.00 1.73
1845 4521 9.167311 CTATTAAGCCAAGTTCTCACACTATTT 57.833 33.333 0.00 0.00 0.00 1.40
1846 4522 5.948992 AAGCCAAGTTCTCACACTATTTC 57.051 39.130 0.00 0.00 0.00 2.17
1847 4523 5.234466 AGCCAAGTTCTCACACTATTTCT 57.766 39.130 0.00 0.00 0.00 2.52
1858 4534 6.598457 TCTCACACTATTTCTAGTCTAAGCGT 59.402 38.462 0.00 0.00 35.99 5.07
1875 4551 2.609459 AGCGTCGAATAGAAAATGCAGG 59.391 45.455 0.00 0.00 0.00 4.85
1883 4559 5.561532 CGAATAGAAAATGCAGGCTACCATG 60.562 44.000 0.00 0.00 0.00 3.66
1884 4560 3.091633 AGAAAATGCAGGCTACCATGT 57.908 42.857 0.00 0.00 0.00 3.21
1913 4589 2.539972 CTCAACTTTGAGCGAGCGCG 62.540 60.000 5.14 5.14 46.97 6.86
1956 4632 3.055167 CCTGACCCATGTGTTGAGTGATA 60.055 47.826 0.00 0.00 0.00 2.15
1994 4670 2.438434 GGGAGCCCCAATGTGACG 60.438 66.667 5.45 0.00 44.65 4.35
2018 4694 6.183360 CGCTCCATGTGTCAAATTAGTTATGT 60.183 38.462 0.00 0.00 0.00 2.29
2022 4698 8.233868 TCCATGTGTCAAATTAGTTATGTTTCG 58.766 33.333 0.00 0.00 0.00 3.46
2036 4712 2.217038 TTTCGCACAGGCTCCCTCT 61.217 57.895 0.00 0.00 38.10 3.69
2063 4739 3.192212 AGGTCGGCCTATTTAGCGTATAC 59.808 47.826 6.89 0.00 44.90 1.47
2077 4753 5.847111 AGCGTATACTGACATGGTTCTTA 57.153 39.130 0.56 0.00 0.00 2.10
2087 4763 6.607600 ACTGACATGGTTCTTATAGTGAGCTA 59.392 38.462 0.00 0.00 0.00 3.32
2098 4774 8.975663 TCTTATAGTGAGCTAGCTACTGTAAA 57.024 34.615 25.29 19.05 30.95 2.01
2110 4786 4.717280 AGCTACTGTAAAGGCTCAGGTTAT 59.283 41.667 6.64 0.00 36.17 1.89
2269 4950 5.357257 AGTTGAACTTTCTCTAGAAACGCA 58.643 37.500 1.00 0.00 38.94 5.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.496911 TGGCTATACTATTGTCCATGCTCTAA 59.503 38.462 0.00 0.00 0.00 2.10
1 2 6.016555 TGGCTATACTATTGTCCATGCTCTA 58.983 40.000 0.00 0.00 0.00 2.43
2 3 4.840680 TGGCTATACTATTGTCCATGCTCT 59.159 41.667 0.00 0.00 0.00 4.09
3 4 5.152623 TGGCTATACTATTGTCCATGCTC 57.847 43.478 0.00 0.00 0.00 4.26
4 5 4.564406 GCTGGCTATACTATTGTCCATGCT 60.564 45.833 0.00 0.00 0.00 3.79
5 6 3.686726 GCTGGCTATACTATTGTCCATGC 59.313 47.826 0.00 0.00 0.00 4.06
6 7 4.934001 CAGCTGGCTATACTATTGTCCATG 59.066 45.833 5.57 0.00 0.00 3.66
7 8 4.564406 GCAGCTGGCTATACTATTGTCCAT 60.564 45.833 17.12 0.00 40.25 3.41
8 9 3.244215 GCAGCTGGCTATACTATTGTCCA 60.244 47.826 17.12 0.00 40.25 4.02
9 10 3.244215 TGCAGCTGGCTATACTATTGTCC 60.244 47.826 17.12 0.00 45.15 4.02
10 11 3.993081 CTGCAGCTGGCTATACTATTGTC 59.007 47.826 17.12 0.00 45.15 3.18
11 12 3.805108 GCTGCAGCTGGCTATACTATTGT 60.805 47.826 31.33 0.00 45.15 2.71
12 13 2.740981 GCTGCAGCTGGCTATACTATTG 59.259 50.000 31.33 0.00 45.15 1.90
13 14 2.289945 GGCTGCAGCTGGCTATACTATT 60.290 50.000 35.82 0.00 45.15 1.73
14 15 1.277557 GGCTGCAGCTGGCTATACTAT 59.722 52.381 35.82 0.00 45.15 2.12
15 16 0.681733 GGCTGCAGCTGGCTATACTA 59.318 55.000 35.82 0.00 45.15 1.82
16 17 1.053264 AGGCTGCAGCTGGCTATACT 61.053 55.000 35.82 19.93 45.15 2.12
17 18 0.883814 CAGGCTGCAGCTGGCTATAC 60.884 60.000 35.82 17.96 45.15 1.47
18 19 1.448924 CAGGCTGCAGCTGGCTATA 59.551 57.895 35.82 0.00 45.15 1.31
19 20 2.192443 CAGGCTGCAGCTGGCTAT 59.808 61.111 35.82 13.88 45.15 2.97
20 21 4.790962 GCAGGCTGCAGCTGGCTA 62.791 66.667 35.82 0.00 44.26 3.93
33 34 2.039480 ACACCATCATATAGCCTGCAGG 59.961 50.000 29.34 29.34 38.53 4.85
34 35 3.244318 TGACACCATCATATAGCCTGCAG 60.244 47.826 6.78 6.78 29.99 4.41
35 36 2.705127 TGACACCATCATATAGCCTGCA 59.295 45.455 0.00 0.00 29.99 4.41
36 37 3.407424 TGACACCATCATATAGCCTGC 57.593 47.619 0.00 0.00 29.99 4.85
37 38 4.903054 ACATGACACCATCATATAGCCTG 58.097 43.478 0.00 0.00 46.96 4.85
38 39 5.573380 AACATGACACCATCATATAGCCT 57.427 39.130 0.00 0.00 46.96 4.58
39 40 6.639632 AAAACATGACACCATCATATAGCC 57.360 37.500 0.00 0.00 46.96 3.93
60 61 6.762661 ACCGGCTATAAACTTCGCTATAAAAA 59.237 34.615 0.00 0.00 0.00 1.94
61 62 6.201425 CACCGGCTATAAACTTCGCTATAAAA 59.799 38.462 0.00 0.00 0.00 1.52
62 63 5.693104 CACCGGCTATAAACTTCGCTATAAA 59.307 40.000 0.00 0.00 0.00 1.40
63 64 5.009911 TCACCGGCTATAAACTTCGCTATAA 59.990 40.000 0.00 0.00 0.00 0.98
64 65 4.520111 TCACCGGCTATAAACTTCGCTATA 59.480 41.667 0.00 0.00 0.00 1.31
65 66 3.319972 TCACCGGCTATAAACTTCGCTAT 59.680 43.478 0.00 0.00 0.00 2.97
66 67 2.689471 TCACCGGCTATAAACTTCGCTA 59.311 45.455 0.00 0.00 0.00 4.26
67 68 1.479323 TCACCGGCTATAAACTTCGCT 59.521 47.619 0.00 0.00 0.00 4.93
68 69 1.930567 TCACCGGCTATAAACTTCGC 58.069 50.000 0.00 0.00 0.00 4.70
69 70 7.878477 TTATAATCACCGGCTATAAACTTCG 57.122 36.000 0.00 0.00 0.00 3.79
74 75 9.661563 CCAACTATTATAATCACCGGCTATAAA 57.338 33.333 0.00 0.00 0.00 1.40
75 76 9.038072 TCCAACTATTATAATCACCGGCTATAA 57.962 33.333 0.00 4.92 0.00 0.98
76 77 8.598202 TCCAACTATTATAATCACCGGCTATA 57.402 34.615 0.00 0.00 0.00 1.31
77 78 7.490657 TCCAACTATTATAATCACCGGCTAT 57.509 36.000 0.00 0.00 0.00 2.97
78 79 6.921486 TCCAACTATTATAATCACCGGCTA 57.079 37.500 0.00 0.00 0.00 3.93
79 80 5.818678 TCCAACTATTATAATCACCGGCT 57.181 39.130 0.00 0.00 0.00 5.52
80 81 8.556213 TTTATCCAACTATTATAATCACCGGC 57.444 34.615 0.00 0.00 0.00 6.13
107 108 9.520515 GGGACCATCATCAATAAAATAGTACAT 57.479 33.333 0.00 0.00 0.00 2.29
108 109 8.723365 AGGGACCATCATCAATAAAATAGTACA 58.277 33.333 0.00 0.00 0.00 2.90
109 110 9.220767 GAGGGACCATCATCAATAAAATAGTAC 57.779 37.037 0.07 0.00 0.00 2.73
110 111 9.170890 AGAGGGACCATCATCAATAAAATAGTA 57.829 33.333 9.17 0.00 0.00 1.82
111 112 8.050316 AGAGGGACCATCATCAATAAAATAGT 57.950 34.615 9.17 0.00 0.00 2.12
112 113 8.159447 TGAGAGGGACCATCATCAATAAAATAG 58.841 37.037 9.17 0.00 0.00 1.73
113 114 7.939039 GTGAGAGGGACCATCATCAATAAAATA 59.061 37.037 9.17 0.00 0.00 1.40
114 115 6.774656 GTGAGAGGGACCATCATCAATAAAAT 59.225 38.462 9.17 0.00 0.00 1.82
115 116 6.069440 AGTGAGAGGGACCATCATCAATAAAA 60.069 38.462 9.17 0.00 0.00 1.52
116 117 5.429762 AGTGAGAGGGACCATCATCAATAAA 59.570 40.000 9.17 0.00 0.00 1.40
117 118 4.971282 AGTGAGAGGGACCATCATCAATAA 59.029 41.667 9.17 0.00 0.00 1.40
118 119 4.560739 AGTGAGAGGGACCATCATCAATA 58.439 43.478 9.17 0.00 0.00 1.90
119 120 3.390639 GAGTGAGAGGGACCATCATCAAT 59.609 47.826 9.17 8.36 0.00 2.57
120 121 2.768527 GAGTGAGAGGGACCATCATCAA 59.231 50.000 9.17 0.00 0.00 2.57
121 122 2.023598 AGAGTGAGAGGGACCATCATCA 60.024 50.000 9.17 6.56 0.00 3.07
122 123 2.364970 CAGAGTGAGAGGGACCATCATC 59.635 54.545 9.17 4.02 0.00 2.92
123 124 2.292785 ACAGAGTGAGAGGGACCATCAT 60.293 50.000 9.17 0.00 0.00 2.45
124 125 1.077828 ACAGAGTGAGAGGGACCATCA 59.922 52.381 9.17 0.00 0.00 3.07
125 126 1.754226 GACAGAGTGAGAGGGACCATC 59.246 57.143 0.00 0.00 0.00 3.51
126 127 1.077828 TGACAGAGTGAGAGGGACCAT 59.922 52.381 0.00 0.00 0.00 3.55
127 128 0.482887 TGACAGAGTGAGAGGGACCA 59.517 55.000 0.00 0.00 0.00 4.02
128 129 0.892063 GTGACAGAGTGAGAGGGACC 59.108 60.000 0.00 0.00 0.00 4.46
129 130 0.523966 CGTGACAGAGTGAGAGGGAC 59.476 60.000 0.00 0.00 0.00 4.46
130 131 0.609406 CCGTGACAGAGTGAGAGGGA 60.609 60.000 0.00 0.00 0.00 4.20
131 132 0.609406 TCCGTGACAGAGTGAGAGGG 60.609 60.000 0.00 0.00 0.00 4.30
132 133 0.808125 CTCCGTGACAGAGTGAGAGG 59.192 60.000 0.00 0.00 0.00 3.69
133 134 1.466950 GACTCCGTGACAGAGTGAGAG 59.533 57.143 6.14 0.00 44.55 3.20
134 135 1.072489 AGACTCCGTGACAGAGTGAGA 59.928 52.381 6.14 0.00 44.55 3.27
135 136 1.466950 GAGACTCCGTGACAGAGTGAG 59.533 57.143 6.14 0.00 44.55 3.51
136 137 1.072489 AGAGACTCCGTGACAGAGTGA 59.928 52.381 6.14 0.00 44.55 3.41
137 138 1.529226 AGAGACTCCGTGACAGAGTG 58.471 55.000 6.14 0.00 44.55 3.51
139 140 2.093394 TCCTAGAGACTCCGTGACAGAG 60.093 54.545 0.00 0.00 37.39 3.35
140 141 1.907255 TCCTAGAGACTCCGTGACAGA 59.093 52.381 0.00 0.00 0.00 3.41
141 142 2.285083 CTCCTAGAGACTCCGTGACAG 58.715 57.143 0.00 0.00 0.00 3.51
142 143 1.679336 GCTCCTAGAGACTCCGTGACA 60.679 57.143 0.00 0.00 0.00 3.58
143 144 1.018910 GCTCCTAGAGACTCCGTGAC 58.981 60.000 0.00 0.00 0.00 3.67
144 145 0.618981 TGCTCCTAGAGACTCCGTGA 59.381 55.000 0.00 0.00 0.00 4.35
145 146 0.736053 GTGCTCCTAGAGACTCCGTG 59.264 60.000 0.00 0.00 0.00 4.94
146 147 0.745128 CGTGCTCCTAGAGACTCCGT 60.745 60.000 0.00 0.00 0.00 4.69
147 148 0.745128 ACGTGCTCCTAGAGACTCCG 60.745 60.000 0.00 0.00 0.00 4.63
148 149 0.736053 CACGTGCTCCTAGAGACTCC 59.264 60.000 0.82 0.00 0.00 3.85
149 150 1.455248 ACACGTGCTCCTAGAGACTC 58.545 55.000 17.22 0.00 0.00 3.36
150 151 1.912417 AACACGTGCTCCTAGAGACT 58.088 50.000 17.22 0.00 0.00 3.24
151 152 2.486982 TGTAACACGTGCTCCTAGAGAC 59.513 50.000 17.22 0.00 0.00 3.36
152 153 2.747989 CTGTAACACGTGCTCCTAGAGA 59.252 50.000 17.22 0.00 0.00 3.10
153 154 2.732597 GCTGTAACACGTGCTCCTAGAG 60.733 54.545 17.22 10.78 0.00 2.43
154 155 1.201647 GCTGTAACACGTGCTCCTAGA 59.798 52.381 17.22 0.01 0.00 2.43
155 156 1.202582 AGCTGTAACACGTGCTCCTAG 59.797 52.381 17.22 9.11 0.00 3.02
156 157 1.067846 CAGCTGTAACACGTGCTCCTA 60.068 52.381 17.22 0.00 30.33 2.94
157 158 0.319900 CAGCTGTAACACGTGCTCCT 60.320 55.000 17.22 0.00 30.33 3.69
158 159 0.319555 TCAGCTGTAACACGTGCTCC 60.320 55.000 17.22 3.56 30.33 4.70
159 160 1.714794 ATCAGCTGTAACACGTGCTC 58.285 50.000 17.22 6.87 30.33 4.26
160 161 2.169832 AATCAGCTGTAACACGTGCT 57.830 45.000 17.22 5.96 32.32 4.40
161 162 4.600012 AATAATCAGCTGTAACACGTGC 57.400 40.909 17.22 0.00 0.00 5.34
162 163 9.849607 CTAATTAATAATCAGCTGTAACACGTG 57.150 33.333 15.48 15.48 0.00 4.49
163 164 9.595823 ACTAATTAATAATCAGCTGTAACACGT 57.404 29.630 14.67 0.40 0.00 4.49
170 171 8.725148 GCATGCTACTAATTAATAATCAGCTGT 58.275 33.333 14.67 0.00 0.00 4.40
171 172 8.724229 TGCATGCTACTAATTAATAATCAGCTG 58.276 33.333 20.33 7.63 0.00 4.24
172 173 8.853077 TGCATGCTACTAATTAATAATCAGCT 57.147 30.769 20.33 0.00 0.00 4.24
173 174 9.713740 GATGCATGCTACTAATTAATAATCAGC 57.286 33.333 20.33 0.00 0.00 4.26
180 181 9.790344 AAGAGAAGATGCATGCTACTAATTAAT 57.210 29.630 20.33 0.00 0.00 1.40
181 182 9.618890 AAAGAGAAGATGCATGCTACTAATTAA 57.381 29.630 20.33 0.00 0.00 1.40
182 183 9.265901 GAAAGAGAAGATGCATGCTACTAATTA 57.734 33.333 20.33 0.00 0.00 1.40
183 184 7.228308 GGAAAGAGAAGATGCATGCTACTAATT 59.772 37.037 20.33 5.13 0.00 1.40
184 185 6.709846 GGAAAGAGAAGATGCATGCTACTAAT 59.290 38.462 20.33 2.76 0.00 1.73
185 186 6.051717 GGAAAGAGAAGATGCATGCTACTAA 58.948 40.000 20.33 0.00 0.00 2.24
186 187 5.365025 AGGAAAGAGAAGATGCATGCTACTA 59.635 40.000 20.33 0.00 0.00 1.82
187 188 4.163839 AGGAAAGAGAAGATGCATGCTACT 59.836 41.667 20.33 14.67 0.00 2.57
188 189 4.450053 AGGAAAGAGAAGATGCATGCTAC 58.550 43.478 20.33 12.56 0.00 3.58
189 190 4.408270 AGAGGAAAGAGAAGATGCATGCTA 59.592 41.667 20.33 5.73 0.00 3.49
190 191 3.200385 AGAGGAAAGAGAAGATGCATGCT 59.800 43.478 20.33 4.11 0.00 3.79
191 192 3.543665 AGAGGAAAGAGAAGATGCATGC 58.456 45.455 11.82 11.82 0.00 4.06
192 193 5.183969 TGAAGAGGAAAGAGAAGATGCATG 58.816 41.667 2.46 0.00 0.00 4.06
193 194 5.432680 TGAAGAGGAAAGAGAAGATGCAT 57.567 39.130 0.00 0.00 0.00 3.96
194 195 4.897509 TGAAGAGGAAAGAGAAGATGCA 57.102 40.909 0.00 0.00 0.00 3.96
195 196 4.815846 GGATGAAGAGGAAAGAGAAGATGC 59.184 45.833 0.00 0.00 0.00 3.91
196 197 6.098695 AGAGGATGAAGAGGAAAGAGAAGATG 59.901 42.308 0.00 0.00 0.00 2.90
197 198 6.204555 AGAGGATGAAGAGGAAAGAGAAGAT 58.795 40.000 0.00 0.00 0.00 2.40
198 199 5.588845 AGAGGATGAAGAGGAAAGAGAAGA 58.411 41.667 0.00 0.00 0.00 2.87
199 200 5.937975 AGAGGATGAAGAGGAAAGAGAAG 57.062 43.478 0.00 0.00 0.00 2.85
200 201 5.188751 GGAAGAGGATGAAGAGGAAAGAGAA 59.811 44.000 0.00 0.00 0.00 2.87
201 202 4.714308 GGAAGAGGATGAAGAGGAAAGAGA 59.286 45.833 0.00 0.00 0.00 3.10
202 203 4.469227 TGGAAGAGGATGAAGAGGAAAGAG 59.531 45.833 0.00 0.00 0.00 2.85
203 204 4.429505 TGGAAGAGGATGAAGAGGAAAGA 58.570 43.478 0.00 0.00 0.00 2.52
204 205 4.833478 TGGAAGAGGATGAAGAGGAAAG 57.167 45.455 0.00 0.00 0.00 2.62
205 206 4.599241 AGTTGGAAGAGGATGAAGAGGAAA 59.401 41.667 0.00 0.00 0.00 3.13
206 207 4.171234 AGTTGGAAGAGGATGAAGAGGAA 58.829 43.478 0.00 0.00 0.00 3.36
207 208 3.772025 GAGTTGGAAGAGGATGAAGAGGA 59.228 47.826 0.00 0.00 0.00 3.71
208 209 3.517100 TGAGTTGGAAGAGGATGAAGAGG 59.483 47.826 0.00 0.00 0.00 3.69
209 210 4.757594 CTGAGTTGGAAGAGGATGAAGAG 58.242 47.826 0.00 0.00 0.00 2.85
210 211 3.055530 GCTGAGTTGGAAGAGGATGAAGA 60.056 47.826 0.00 0.00 0.00 2.87
211 212 3.269178 GCTGAGTTGGAAGAGGATGAAG 58.731 50.000 0.00 0.00 0.00 3.02
212 213 2.639347 TGCTGAGTTGGAAGAGGATGAA 59.361 45.455 0.00 0.00 0.00 2.57
213 214 2.259917 TGCTGAGTTGGAAGAGGATGA 58.740 47.619 0.00 0.00 0.00 2.92
214 215 2.775911 TGCTGAGTTGGAAGAGGATG 57.224 50.000 0.00 0.00 0.00 3.51
215 216 3.795688 TTTGCTGAGTTGGAAGAGGAT 57.204 42.857 0.00 0.00 0.00 3.24
216 217 3.576078 TTTTGCTGAGTTGGAAGAGGA 57.424 42.857 0.00 0.00 0.00 3.71
240 241 9.181061 GGGCAGGTTGTAAGACTTTAAATATTA 57.819 33.333 0.00 0.00 0.00 0.98
241 242 7.672239 TGGGCAGGTTGTAAGACTTTAAATATT 59.328 33.333 0.00 0.00 0.00 1.28
242 243 7.122204 GTGGGCAGGTTGTAAGACTTTAAATAT 59.878 37.037 0.00 0.00 0.00 1.28
243 244 6.431852 GTGGGCAGGTTGTAAGACTTTAAATA 59.568 38.462 0.00 0.00 0.00 1.40
244 245 5.243060 GTGGGCAGGTTGTAAGACTTTAAAT 59.757 40.000 0.00 0.00 0.00 1.40
245 246 4.581409 GTGGGCAGGTTGTAAGACTTTAAA 59.419 41.667 0.00 0.00 0.00 1.52
246 247 4.139038 GTGGGCAGGTTGTAAGACTTTAA 58.861 43.478 0.00 0.00 0.00 1.52
247 248 3.393278 AGTGGGCAGGTTGTAAGACTTTA 59.607 43.478 0.00 0.00 0.00 1.85
248 249 2.174854 AGTGGGCAGGTTGTAAGACTTT 59.825 45.455 0.00 0.00 0.00 2.66
249 250 1.774856 AGTGGGCAGGTTGTAAGACTT 59.225 47.619 0.00 0.00 0.00 3.01
250 251 1.348036 GAGTGGGCAGGTTGTAAGACT 59.652 52.381 0.00 0.00 0.00 3.24
251 252 1.809684 GAGTGGGCAGGTTGTAAGAC 58.190 55.000 0.00 0.00 0.00 3.01
252 253 0.320374 CGAGTGGGCAGGTTGTAAGA 59.680 55.000 0.00 0.00 0.00 2.10
253 254 1.298859 GCGAGTGGGCAGGTTGTAAG 61.299 60.000 0.00 0.00 0.00 2.34
254 255 1.302192 GCGAGTGGGCAGGTTGTAA 60.302 57.895 0.00 0.00 0.00 2.41
255 256 2.345991 GCGAGTGGGCAGGTTGTA 59.654 61.111 0.00 0.00 0.00 2.41
256 257 4.988598 CGCGAGTGGGCAGGTTGT 62.989 66.667 0.00 0.00 0.00 3.32
389 398 1.616865 GTGTGTATCGGCTATGGGCTA 59.383 52.381 0.13 0.00 41.46 3.93
430 461 1.593750 GCATGCTAGTCTGCGAGGG 60.594 63.158 11.37 0.00 35.36 4.30
668 779 2.203337 GTTCACTGCCTGGCACCA 60.203 61.111 19.30 0.79 33.79 4.17
692 812 4.642437 GGATTCAGAGAAGGATTTTCCCAC 59.358 45.833 0.00 0.00 37.19 4.61
729 850 5.179368 TCGGGATGATTTGAATCGATTTAGC 59.821 40.000 12.81 4.79 38.26 3.09
730 851 6.785488 TCGGGATGATTTGAATCGATTTAG 57.215 37.500 12.81 0.00 38.26 1.85
752 876 7.720074 CCTAGGTCAGTTTAGGGGAATAAAATC 59.280 40.741 0.00 0.00 34.13 2.17
795 1245 4.032310 TGGGAATTTTGGGGATGATTCAG 58.968 43.478 0.00 0.00 31.72 3.02
847 1312 5.242393 GTGGACACTTGACACTAACCTAGTA 59.758 44.000 0.00 0.00 37.23 1.82
848 1313 4.038883 GTGGACACTTGACACTAACCTAGT 59.961 45.833 0.00 0.00 40.28 2.57
853 1318 3.802685 GTCTGTGGACACTTGACACTAAC 59.197 47.826 17.42 0.00 41.75 2.34
1124 1595 1.379710 TGTGGCTGTTGTGGCTGTT 60.380 52.632 0.00 0.00 0.00 3.16
1125 1596 2.120909 GTGTGGCTGTTGTGGCTGT 61.121 57.895 0.00 0.00 0.00 4.40
1126 1597 2.723746 GTGTGGCTGTTGTGGCTG 59.276 61.111 0.00 0.00 0.00 4.85
1127 1598 2.519302 GGTGTGGCTGTTGTGGCT 60.519 61.111 0.00 0.00 0.00 4.75
1128 1599 3.605664 GGGTGTGGCTGTTGTGGC 61.606 66.667 0.00 0.00 0.00 5.01
1129 1600 2.123939 TGGGTGTGGCTGTTGTGG 60.124 61.111 0.00 0.00 0.00 4.17
1130 1601 1.152984 TCTGGGTGTGGCTGTTGTG 60.153 57.895 0.00 0.00 0.00 3.33
1131 1602 1.149174 CTCTGGGTGTGGCTGTTGT 59.851 57.895 0.00 0.00 0.00 3.32
1132 1603 0.604780 CTCTCTGGGTGTGGCTGTTG 60.605 60.000 0.00 0.00 0.00 3.33
1227 3898 5.221422 GCTCATAGCTGTACTTCTCCAGAAT 60.221 44.000 0.00 0.00 38.45 2.40
1298 3969 6.869206 AGGTTGTGTGGAGTTACATACTAT 57.131 37.500 0.00 0.00 37.17 2.12
1320 3991 2.173519 ACCATTTGACCATCAGGCAAG 58.826 47.619 0.00 0.00 39.06 4.01
1370 4041 7.064490 CCAAAATAAGCCATAACATTTGACCAC 59.936 37.037 0.00 0.00 0.00 4.16
1427 4098 4.635324 TCGCATTGAATACAAGATGAGCAA 59.365 37.500 0.00 0.00 39.46 3.91
1448 4119 1.300620 TCGCCACACCTTCTGTTCG 60.301 57.895 0.00 0.00 0.00 3.95
1560 4232 8.594550 AGAGTGTTATAATTATTGTAGGCGGAT 58.405 33.333 2.68 0.00 0.00 4.18
1563 4235 7.870954 TCCAGAGTGTTATAATTATTGTAGGCG 59.129 37.037 2.68 0.00 0.00 5.52
1568 4240 7.011109 GTGCGTCCAGAGTGTTATAATTATTGT 59.989 37.037 2.68 0.00 0.00 2.71
1569 4241 7.345192 GTGCGTCCAGAGTGTTATAATTATTG 58.655 38.462 2.68 0.00 0.00 1.90
1570 4242 6.482308 GGTGCGTCCAGAGTGTTATAATTATT 59.518 38.462 2.68 0.00 35.97 1.40
1571 4243 5.989777 GGTGCGTCCAGAGTGTTATAATTAT 59.010 40.000 2.97 2.97 35.97 1.28
1572 4244 5.353938 GGTGCGTCCAGAGTGTTATAATTA 58.646 41.667 0.00 0.00 35.97 1.40
1573 4245 4.189231 GGTGCGTCCAGAGTGTTATAATT 58.811 43.478 0.00 0.00 35.97 1.40
1574 4246 3.737047 CGGTGCGTCCAGAGTGTTATAAT 60.737 47.826 0.00 0.00 35.57 1.28
1575 4247 2.416296 CGGTGCGTCCAGAGTGTTATAA 60.416 50.000 0.00 0.00 35.57 0.98
1576 4248 1.133598 CGGTGCGTCCAGAGTGTTATA 59.866 52.381 0.00 0.00 35.57 0.98
1577 4249 0.108804 CGGTGCGTCCAGAGTGTTAT 60.109 55.000 0.00 0.00 35.57 1.89
1578 4250 1.287815 CGGTGCGTCCAGAGTGTTA 59.712 57.895 0.00 0.00 35.57 2.41
1579 4251 2.029073 CGGTGCGTCCAGAGTGTT 59.971 61.111 0.00 0.00 35.57 3.32
1580 4252 4.664677 GCGGTGCGTCCAGAGTGT 62.665 66.667 0.00 0.00 35.57 3.55
1588 4260 4.729856 AGTAACCGGCGGTGCGTC 62.730 66.667 34.87 21.51 35.34 5.19
1599 4271 2.028748 TCAGAAGTAACGGCCAGTAACC 60.029 50.000 2.24 0.00 0.00 2.85
1600 4272 3.308438 TCAGAAGTAACGGCCAGTAAC 57.692 47.619 2.24 0.00 0.00 2.50
1601 4273 3.857052 CATCAGAAGTAACGGCCAGTAA 58.143 45.455 2.24 0.00 0.00 2.24
1602 4274 2.418197 GCATCAGAAGTAACGGCCAGTA 60.418 50.000 2.24 0.00 0.00 2.74
1603 4275 1.676014 GCATCAGAAGTAACGGCCAGT 60.676 52.381 2.24 0.00 0.00 4.00
1604 4276 1.009829 GCATCAGAAGTAACGGCCAG 58.990 55.000 2.24 0.00 0.00 4.85
1605 4277 0.739462 CGCATCAGAAGTAACGGCCA 60.739 55.000 2.24 0.00 0.00 5.36
1606 4278 0.459585 TCGCATCAGAAGTAACGGCC 60.460 55.000 0.00 0.00 0.00 6.13
1607 4279 1.523095 GATCGCATCAGAAGTAACGGC 59.477 52.381 0.00 0.00 0.00 5.68
1608 4280 3.085443 AGATCGCATCAGAAGTAACGG 57.915 47.619 0.00 0.00 0.00 4.44
1609 4281 4.907010 GTCTAGATCGCATCAGAAGTAACG 59.093 45.833 0.00 0.00 0.00 3.18
1610 4282 5.912396 CAGTCTAGATCGCATCAGAAGTAAC 59.088 44.000 0.00 0.00 0.00 2.50
1611 4283 5.823045 TCAGTCTAGATCGCATCAGAAGTAA 59.177 40.000 0.00 0.00 0.00 2.24
1612 4284 5.237561 GTCAGTCTAGATCGCATCAGAAGTA 59.762 44.000 0.00 0.00 0.00 2.24
1613 4285 4.036262 GTCAGTCTAGATCGCATCAGAAGT 59.964 45.833 0.00 0.00 0.00 3.01
1614 4286 4.536065 GTCAGTCTAGATCGCATCAGAAG 58.464 47.826 0.00 0.00 0.00 2.85
1615 4287 3.316588 GGTCAGTCTAGATCGCATCAGAA 59.683 47.826 0.00 0.00 0.00 3.02
1616 4288 2.881513 GGTCAGTCTAGATCGCATCAGA 59.118 50.000 0.00 0.00 0.00 3.27
1617 4289 2.030363 GGGTCAGTCTAGATCGCATCAG 60.030 54.545 0.00 0.00 0.00 2.90
1618 4290 1.957177 GGGTCAGTCTAGATCGCATCA 59.043 52.381 0.00 0.00 0.00 3.07
1619 4291 1.271102 GGGGTCAGTCTAGATCGCATC 59.729 57.143 0.00 0.00 32.36 3.91
1620 4292 1.333177 GGGGTCAGTCTAGATCGCAT 58.667 55.000 0.00 0.00 32.36 4.73
1621 4293 0.033503 TGGGGTCAGTCTAGATCGCA 60.034 55.000 0.00 0.00 38.99 5.10
1622 4294 0.386113 GTGGGGTCAGTCTAGATCGC 59.614 60.000 0.00 0.00 32.67 4.58
1623 4295 1.678627 CTGTGGGGTCAGTCTAGATCG 59.321 57.143 0.00 0.00 0.00 3.69
1624 4296 3.019799 TCTGTGGGGTCAGTCTAGATC 57.980 52.381 0.00 0.00 36.85 2.75
1625 4297 3.052566 TGATCTGTGGGGTCAGTCTAGAT 60.053 47.826 0.00 0.00 36.85 1.98
1626 4298 2.311841 TGATCTGTGGGGTCAGTCTAGA 59.688 50.000 0.00 0.00 36.85 2.43
1627 4299 2.739943 TGATCTGTGGGGTCAGTCTAG 58.260 52.381 0.00 0.00 36.85 2.43
1628 4300 2.832129 GTTGATCTGTGGGGTCAGTCTA 59.168 50.000 0.00 0.00 36.85 2.59
1629 4301 1.625818 GTTGATCTGTGGGGTCAGTCT 59.374 52.381 0.00 0.00 36.85 3.24
1630 4302 1.347707 TGTTGATCTGTGGGGTCAGTC 59.652 52.381 0.00 0.00 36.85 3.51
1631 4303 1.434188 TGTTGATCTGTGGGGTCAGT 58.566 50.000 0.00 0.00 36.85 3.41
1632 4304 2.795231 ATGTTGATCTGTGGGGTCAG 57.205 50.000 0.00 0.00 36.85 3.51
1633 4305 3.587061 ACTAATGTTGATCTGTGGGGTCA 59.413 43.478 0.00 0.00 0.00 4.02
1634 4306 4.222124 ACTAATGTTGATCTGTGGGGTC 57.778 45.455 0.00 0.00 0.00 4.46
1635 4307 4.657814 AACTAATGTTGATCTGTGGGGT 57.342 40.909 0.00 0.00 34.71 4.95
1636 4308 5.105756 GGAAAACTAATGTTGATCTGTGGGG 60.106 44.000 0.00 0.00 36.39 4.96
1637 4309 5.105756 GGGAAAACTAATGTTGATCTGTGGG 60.106 44.000 0.00 0.00 36.39 4.61
1638 4310 5.711976 AGGGAAAACTAATGTTGATCTGTGG 59.288 40.000 0.00 0.00 36.39 4.17
1646 4318 2.030363 TGCGCAGGGAAAACTAATGTTG 60.030 45.455 5.66 0.00 36.39 3.33
1651 4323 1.975660 AAGTGCGCAGGGAAAACTAA 58.024 45.000 12.22 0.00 0.00 2.24
1656 4328 2.727544 GCAAAGTGCGCAGGGAAA 59.272 55.556 12.22 0.00 31.71 3.13
1666 4338 1.880819 GCATGAGTGGGGGCAAAGTG 61.881 60.000 0.00 0.00 0.00 3.16
1668 4340 1.607178 TGCATGAGTGGGGGCAAAG 60.607 57.895 0.00 0.00 32.54 2.77
1673 4345 2.361610 GGTGTGCATGAGTGGGGG 60.362 66.667 0.00 0.00 0.00 5.40
1676 4348 1.676635 CCCAGGTGTGCATGAGTGG 60.677 63.158 0.00 0.00 0.00 4.00
1678 4350 2.759114 CCCCAGGTGTGCATGAGT 59.241 61.111 0.00 0.00 0.00 3.41
1682 4354 3.913445 TTGGCCCCAGGTGTGCAT 61.913 61.111 0.00 0.00 0.00 3.96
1686 4358 2.069165 GAGAAGTTGGCCCCAGGTGT 62.069 60.000 0.00 0.00 0.00 4.16
1687 4359 1.303643 GAGAAGTTGGCCCCAGGTG 60.304 63.158 0.00 0.00 0.00 4.00
1692 4364 0.961753 CAAACTGAGAAGTTGGCCCC 59.038 55.000 0.00 0.00 31.64 5.80
1694 4366 2.033424 GTGACAAACTGAGAAGTTGGCC 59.967 50.000 0.00 0.00 31.64 5.36
1695 4367 2.033424 GGTGACAAACTGAGAAGTTGGC 59.967 50.000 0.00 0.00 31.64 4.52
1707 4379 8.880878 AAACAATTTTAGTATGGGTGACAAAC 57.119 30.769 0.00 0.00 0.00 2.93
1709 4381 8.239038 TGAAACAATTTTAGTATGGGTGACAA 57.761 30.769 0.00 0.00 0.00 3.18
1710 4382 7.825331 TGAAACAATTTTAGTATGGGTGACA 57.175 32.000 0.00 0.00 0.00 3.58
1720 4392 7.042523 GCATGCTCAACTTGAAACAATTTTAGT 60.043 33.333 11.37 0.00 0.00 2.24
1730 4402 5.772825 AGTTAAGCATGCTCAACTTGAAA 57.227 34.783 27.47 7.34 0.00 2.69
1731 4403 5.772825 AAGTTAAGCATGCTCAACTTGAA 57.227 34.783 37.04 14.98 39.20 2.69
1756 4428 5.760253 TCTGAAGCCCATTCGAAAAGATATC 59.240 40.000 0.00 0.00 41.14 1.63
1759 4431 3.955471 TCTGAAGCCCATTCGAAAAGAT 58.045 40.909 0.00 0.00 41.14 2.40
1817 4493 6.769512 AGTGTGAGAACTTGGCTTAATAGAA 58.230 36.000 0.00 0.00 0.00 2.10
1818 4494 6.360370 AGTGTGAGAACTTGGCTTAATAGA 57.640 37.500 0.00 0.00 0.00 1.98
1832 4508 7.120873 ACGCTTAGACTAGAAATAGTGTGAGAA 59.879 37.037 0.00 0.00 31.46 2.87
1835 4511 6.456584 CGACGCTTAGACTAGAAATAGTGTGA 60.457 42.308 0.00 0.00 0.00 3.58
1837 4513 5.583854 TCGACGCTTAGACTAGAAATAGTGT 59.416 40.000 0.00 1.25 0.00 3.55
1838 4514 6.045698 TCGACGCTTAGACTAGAAATAGTG 57.954 41.667 0.00 0.00 0.00 2.74
1839 4515 6.674694 TTCGACGCTTAGACTAGAAATAGT 57.325 37.500 0.00 0.00 0.00 2.12
1840 4516 8.710551 TCTATTCGACGCTTAGACTAGAAATAG 58.289 37.037 0.00 0.00 29.56 1.73
1841 4517 8.599055 TCTATTCGACGCTTAGACTAGAAATA 57.401 34.615 0.00 0.00 29.56 1.40
1842 4518 7.493743 TCTATTCGACGCTTAGACTAGAAAT 57.506 36.000 0.00 0.00 29.56 2.17
1843 4519 6.915544 TCTATTCGACGCTTAGACTAGAAA 57.084 37.500 0.00 0.00 29.56 2.52
1844 4520 6.915544 TTCTATTCGACGCTTAGACTAGAA 57.084 37.500 8.35 8.35 36.75 2.10
1845 4521 6.915544 TTTCTATTCGACGCTTAGACTAGA 57.084 37.500 0.00 0.00 30.26 2.43
1846 4522 7.357695 GCATTTTCTATTCGACGCTTAGACTAG 60.358 40.741 6.21 0.00 0.00 2.57
1847 4523 6.417044 GCATTTTCTATTCGACGCTTAGACTA 59.583 38.462 6.21 0.00 0.00 2.59
1858 4534 4.127171 GGTAGCCTGCATTTTCTATTCGA 58.873 43.478 0.00 0.00 0.00 3.71
1875 4551 1.160329 GGCACGGATGACATGGTAGC 61.160 60.000 0.00 0.00 32.03 3.58
1883 4559 1.197721 CAAAGTTGAGGCACGGATGAC 59.802 52.381 0.00 0.00 0.00 3.06
1884 4560 1.071542 TCAAAGTTGAGGCACGGATGA 59.928 47.619 0.00 0.00 32.50 2.92
1913 4589 2.300787 AAACGACACGACAGCTCGC 61.301 57.895 0.00 0.00 44.33 5.03
1922 4598 2.604174 GGTCAGGCCAAACGACACG 61.604 63.158 5.01 0.00 37.17 4.49
1927 4603 1.603455 ACATGGGTCAGGCCAAACG 60.603 57.895 5.01 0.00 39.65 3.60
1956 4632 3.306019 CCAAGTTTATTTTGGGCGCTTCT 60.306 43.478 7.64 0.00 41.11 2.85
1994 4670 7.088589 ACATAACTAATTTGACACATGGAGC 57.911 36.000 0.00 0.00 0.00 4.70
2018 4694 0.902984 TAGAGGGAGCCTGTGCGAAA 60.903 55.000 0.00 0.00 44.33 3.46
2022 4698 1.410882 CTAGTTAGAGGGAGCCTGTGC 59.589 57.143 0.00 0.00 31.76 4.57
2050 4726 7.948357 AGAACCATGTCAGTATACGCTAAATA 58.052 34.615 0.00 0.00 0.00 1.40
2063 4739 5.911752 AGCTCACTATAAGAACCATGTCAG 58.088 41.667 0.00 0.00 0.00 3.51
2077 4753 5.010213 GCCTTTACAGTAGCTAGCTCACTAT 59.990 44.000 23.26 14.34 0.00 2.12
2087 4763 2.541466 ACCTGAGCCTTTACAGTAGCT 58.459 47.619 0.00 0.00 38.56 3.32
2098 4774 2.119495 CCACTACCATAACCTGAGCCT 58.881 52.381 0.00 0.00 0.00 4.58
2246 4924 5.357257 TGCGTTTCTAGAGAAAGTTCAACT 58.643 37.500 4.94 0.00 43.82 3.16
2247 4925 5.652744 TGCGTTTCTAGAGAAAGTTCAAC 57.347 39.130 4.94 0.00 43.82 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.