Multiple sequence alignment - TraesCS7A01G111500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G111500 chr7A 100.000 3001 0 0 1 3001 68210339 68213339 0.000000e+00 5542.0
1 TraesCS7A01G111500 chr7A 98.612 1009 11 1 1993 3001 287017757 287016752 0.000000e+00 1783.0
2 TraesCS7A01G111500 chr7A 79.262 921 111 45 1065 1957 70182794 70183662 1.210000e-158 569.0
3 TraesCS7A01G111500 chr7A 97.436 39 0 1 1953 1991 579815954 579815917 6.940000e-07 65.8
4 TraesCS7A01G111500 chr3B 98.910 1009 8 1 1993 3001 770216588 770215583 0.000000e+00 1799.0
5 TraesCS7A01G111500 chr2A 98.612 1009 11 1 1993 3001 75594357 75595362 0.000000e+00 1783.0
6 TraesCS7A01G111500 chr2A 98.414 1009 13 1 1993 3001 469192272 469191267 0.000000e+00 1772.0
7 TraesCS7A01G111500 chr2A 96.311 732 26 1 1 731 515144542 515143811 0.000000e+00 1201.0
8 TraesCS7A01G111500 chr2A 91.713 362 21 5 2644 3001 61501862 61501506 7.470000e-136 494.0
9 TraesCS7A01G111500 chr2A 75.057 882 140 49 1099 1957 613689773 613688949 1.330000e-88 337.0
10 TraesCS7A01G111500 chr2A 83.516 273 36 4 1084 1356 613876940 613876677 2.310000e-61 246.0
11 TraesCS7A01G111500 chr2A 79.301 372 54 15 998 1356 613700803 613700442 3.870000e-59 239.0
12 TraesCS7A01G111500 chr2A 81.707 246 35 9 1105 1348 613477891 613477654 2.360000e-46 196.0
13 TraesCS7A01G111500 chr1A 98.513 1009 12 1 1993 3001 20563508 20562503 0.000000e+00 1777.0
14 TraesCS7A01G111500 chr1A 96.424 727 20 3 1 725 555661392 555662114 0.000000e+00 1194.0
15 TraesCS7A01G111500 chr1A 100.000 36 0 0 1956 1991 575630260 575630225 1.930000e-07 67.6
16 TraesCS7A01G111500 chr1A 91.489 47 2 1 1944 1988 535717051 535717097 2.500000e-06 63.9
17 TraesCS7A01G111500 chr3A 98.315 1009 14 1 1993 3001 235225707 235224702 0.000000e+00 1766.0
18 TraesCS7A01G111500 chr3A 98.315 1009 14 1 1993 3001 249982229 249983234 0.000000e+00 1766.0
19 TraesCS7A01G111500 chr3A 100.000 37 0 0 1955 1991 713867481 713867445 5.370000e-08 69.4
20 TraesCS7A01G111500 chr6A 96.333 1009 16 2 1993 3001 238654482 238653495 0.000000e+00 1639.0
21 TraesCS7A01G111500 chr6A 98.628 729 10 0 1 729 182476967 182476239 0.000000e+00 1291.0
22 TraesCS7A01G111500 chr6A 88.965 734 77 2 2 731 22436055 22435322 0.000000e+00 904.0
23 TraesCS7A01G111500 chr4D 92.758 1008 69 2 1993 3000 466247401 466248404 0.000000e+00 1454.0
24 TraesCS7A01G111500 chr4D 92.730 729 52 1 1 729 477859019 477859746 0.000000e+00 1051.0
25 TraesCS7A01G111500 chr4A 95.448 703 27 2 1 701 189661223 189661922 0.000000e+00 1116.0
26 TraesCS7A01G111500 chr4A 100.000 36 0 0 1956 1991 626089981 626089946 1.930000e-07 67.6
27 TraesCS7A01G111500 chr6B 87.671 730 70 15 1 730 610244800 610244091 0.000000e+00 832.0
28 TraesCS7A01G111500 chr6B 86.420 729 79 14 1 729 610256694 610255986 0.000000e+00 780.0
29 TraesCS7A01G111500 chr5A 93.360 497 32 1 232 728 548462818 548463313 0.000000e+00 734.0
30 TraesCS7A01G111500 chr7B 91.633 490 25 6 1473 1957 5943535 5944013 0.000000e+00 664.0
31 TraesCS7A01G111500 chr7B 89.749 439 32 10 1047 1478 5942765 5943197 1.570000e-152 549.0
32 TraesCS7A01G111500 chr7B 97.368 38 1 0 1954 1991 664976663 664976626 6.940000e-07 65.8
33 TraesCS7A01G111500 chr2B 75.192 911 151 46 1064 1957 551399574 551398722 7.910000e-96 361.0
34 TraesCS7A01G111500 chr2B 97.368 38 1 0 1954 1991 615909329 615909366 6.940000e-07 65.8
35 TraesCS7A01G111500 chr2D 84.615 273 33 6 1084 1356 472443540 472443277 2.290000e-66 263.0
36 TraesCS7A01G111500 chr2D 81.985 272 39 5 1086 1356 472230044 472229782 3.890000e-54 222.0
37 TraesCS7A01G111500 chr2D 79.851 268 43 7 1083 1348 472131692 472131434 5.110000e-43 185.0
38 TraesCS7A01G111500 chr1B 95.455 44 1 1 1949 1991 361813519 361813476 5.370000e-08 69.4
39 TraesCS7A01G111500 chr1B 100.000 36 0 0 1956 1991 422463169 422463134 1.930000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G111500 chr7A 68210339 68213339 3000 False 5542.0 5542 100.000 1 3001 1 chr7A.!!$F1 3000
1 TraesCS7A01G111500 chr7A 287016752 287017757 1005 True 1783.0 1783 98.612 1993 3001 1 chr7A.!!$R1 1008
2 TraesCS7A01G111500 chr7A 70182794 70183662 868 False 569.0 569 79.262 1065 1957 1 chr7A.!!$F2 892
3 TraesCS7A01G111500 chr3B 770215583 770216588 1005 True 1799.0 1799 98.910 1993 3001 1 chr3B.!!$R1 1008
4 TraesCS7A01G111500 chr2A 75594357 75595362 1005 False 1783.0 1783 98.612 1993 3001 1 chr2A.!!$F1 1008
5 TraesCS7A01G111500 chr2A 469191267 469192272 1005 True 1772.0 1772 98.414 1993 3001 1 chr2A.!!$R2 1008
6 TraesCS7A01G111500 chr2A 515143811 515144542 731 True 1201.0 1201 96.311 1 731 1 chr2A.!!$R3 730
7 TraesCS7A01G111500 chr2A 613688949 613689773 824 True 337.0 337 75.057 1099 1957 1 chr2A.!!$R5 858
8 TraesCS7A01G111500 chr1A 20562503 20563508 1005 True 1777.0 1777 98.513 1993 3001 1 chr1A.!!$R1 1008
9 TraesCS7A01G111500 chr1A 555661392 555662114 722 False 1194.0 1194 96.424 1 725 1 chr1A.!!$F2 724
10 TraesCS7A01G111500 chr3A 235224702 235225707 1005 True 1766.0 1766 98.315 1993 3001 1 chr3A.!!$R1 1008
11 TraesCS7A01G111500 chr3A 249982229 249983234 1005 False 1766.0 1766 98.315 1993 3001 1 chr3A.!!$F1 1008
12 TraesCS7A01G111500 chr6A 238653495 238654482 987 True 1639.0 1639 96.333 1993 3001 1 chr6A.!!$R3 1008
13 TraesCS7A01G111500 chr6A 182476239 182476967 728 True 1291.0 1291 98.628 1 729 1 chr6A.!!$R2 728
14 TraesCS7A01G111500 chr6A 22435322 22436055 733 True 904.0 904 88.965 2 731 1 chr6A.!!$R1 729
15 TraesCS7A01G111500 chr4D 466247401 466248404 1003 False 1454.0 1454 92.758 1993 3000 1 chr4D.!!$F1 1007
16 TraesCS7A01G111500 chr4D 477859019 477859746 727 False 1051.0 1051 92.730 1 729 1 chr4D.!!$F2 728
17 TraesCS7A01G111500 chr4A 189661223 189661922 699 False 1116.0 1116 95.448 1 701 1 chr4A.!!$F1 700
18 TraesCS7A01G111500 chr6B 610244091 610244800 709 True 832.0 832 87.671 1 730 1 chr6B.!!$R1 729
19 TraesCS7A01G111500 chr6B 610255986 610256694 708 True 780.0 780 86.420 1 729 1 chr6B.!!$R2 728
20 TraesCS7A01G111500 chr7B 5942765 5944013 1248 False 606.5 664 90.691 1047 1957 2 chr7B.!!$F1 910
21 TraesCS7A01G111500 chr2B 551398722 551399574 852 True 361.0 361 75.192 1064 1957 1 chr2B.!!$R1 893

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
989 1000 0.033366 TTGAGCTAGCTCGTGTTGCA 59.967 50.0 33.55 16.65 45.48 4.08 F
1468 1492 0.109179 TGAACAATGCTGCAATCGCC 60.109 50.0 6.36 0.00 37.32 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1989 2397 0.391395 AGTGCTGCTCATCTCAGTGC 60.391 55.000 0.0 0.0 34.21 4.40 R
2364 2772 1.269723 TCGACGATGCAGAACTCTTGT 59.730 47.619 0.0 0.0 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.058124 CCAAGTTGAACTTCGAGATGACA 58.942 43.478 7.75 0.00 36.03 3.58
183 190 0.238289 AGTTTTTCGCGTGGCTCATG 59.762 50.000 5.77 0.00 0.00 3.07
619 630 1.103803 GATGCCGTGAGAGTAGTCCA 58.896 55.000 0.00 0.00 0.00 4.02
628 639 5.107065 CCGTGAGAGTAGTCCATTTTGTTTC 60.107 44.000 0.00 0.00 0.00 2.78
629 640 5.696724 CGTGAGAGTAGTCCATTTTGTTTCT 59.303 40.000 0.00 0.00 0.00 2.52
748 759 4.929819 AAAAGACCGTGCCAAATAAACT 57.070 36.364 0.00 0.00 0.00 2.66
749 760 4.929819 AAAGACCGTGCCAAATAAACTT 57.070 36.364 0.00 0.00 0.00 2.66
750 761 4.499037 AAGACCGTGCCAAATAAACTTC 57.501 40.909 0.00 0.00 0.00 3.01
751 762 3.751518 AGACCGTGCCAAATAAACTTCT 58.248 40.909 0.00 0.00 0.00 2.85
752 763 3.751698 AGACCGTGCCAAATAAACTTCTC 59.248 43.478 0.00 0.00 0.00 2.87
753 764 3.482436 ACCGTGCCAAATAAACTTCTCA 58.518 40.909 0.00 0.00 0.00 3.27
754 765 3.502211 ACCGTGCCAAATAAACTTCTCAG 59.498 43.478 0.00 0.00 0.00 3.35
755 766 3.119849 CCGTGCCAAATAAACTTCTCAGG 60.120 47.826 0.00 0.00 0.00 3.86
756 767 3.119849 CGTGCCAAATAAACTTCTCAGGG 60.120 47.826 0.00 0.00 0.00 4.45
757 768 2.825532 TGCCAAATAAACTTCTCAGGGC 59.174 45.455 0.00 0.00 39.29 5.19
758 769 2.825532 GCCAAATAAACTTCTCAGGGCA 59.174 45.455 0.00 0.00 38.71 5.36
759 770 3.448660 GCCAAATAAACTTCTCAGGGCAT 59.551 43.478 0.00 0.00 38.71 4.40
760 771 4.440663 GCCAAATAAACTTCTCAGGGCATC 60.441 45.833 0.00 0.00 38.71 3.91
761 772 4.201950 CCAAATAAACTTCTCAGGGCATCG 60.202 45.833 0.00 0.00 0.00 3.84
762 773 2.024176 TAAACTTCTCAGGGCATCGC 57.976 50.000 0.00 0.00 0.00 4.58
763 774 0.326264 AAACTTCTCAGGGCATCGCT 59.674 50.000 0.00 0.00 0.00 4.93
764 775 0.392193 AACTTCTCAGGGCATCGCTG 60.392 55.000 4.73 4.73 44.21 5.18
780 791 3.694364 CTGCTCAGCCGGACATATT 57.306 52.632 5.05 0.00 0.00 1.28
781 792 1.959042 CTGCTCAGCCGGACATATTT 58.041 50.000 5.05 0.00 0.00 1.40
782 793 2.292267 CTGCTCAGCCGGACATATTTT 58.708 47.619 5.05 0.00 0.00 1.82
783 794 3.466836 CTGCTCAGCCGGACATATTTTA 58.533 45.455 5.05 0.00 0.00 1.52
784 795 3.876914 CTGCTCAGCCGGACATATTTTAA 59.123 43.478 5.05 0.00 0.00 1.52
785 796 4.460263 TGCTCAGCCGGACATATTTTAAT 58.540 39.130 5.05 0.00 0.00 1.40
786 797 4.275689 TGCTCAGCCGGACATATTTTAATG 59.724 41.667 5.05 0.00 0.00 1.90
787 798 4.320494 GCTCAGCCGGACATATTTTAATGG 60.320 45.833 5.05 0.00 0.00 3.16
788 799 4.141287 TCAGCCGGACATATTTTAATGGG 58.859 43.478 5.05 0.00 0.00 4.00
789 800 2.890945 AGCCGGACATATTTTAATGGGC 59.109 45.455 5.05 0.00 34.02 5.36
790 801 2.890945 GCCGGACATATTTTAATGGGCT 59.109 45.455 5.05 0.00 32.24 5.19
791 802 3.305335 GCCGGACATATTTTAATGGGCTG 60.305 47.826 5.05 0.00 32.24 4.85
792 803 3.255642 CCGGACATATTTTAATGGGCTGG 59.744 47.826 0.00 0.00 0.00 4.85
793 804 3.255642 CGGACATATTTTAATGGGCTGGG 59.744 47.826 0.00 0.00 0.00 4.45
794 805 3.006859 GGACATATTTTAATGGGCTGGGC 59.993 47.826 0.00 0.00 0.00 5.36
795 806 3.640967 GACATATTTTAATGGGCTGGGCA 59.359 43.478 0.00 0.00 0.00 5.36
796 807 4.233729 ACATATTTTAATGGGCTGGGCAT 58.766 39.130 0.00 0.00 0.00 4.40
797 808 4.040706 ACATATTTTAATGGGCTGGGCATG 59.959 41.667 0.00 0.00 0.00 4.06
798 809 2.244486 TTTTAATGGGCTGGGCATGA 57.756 45.000 0.00 0.00 0.00 3.07
799 810 2.244486 TTTAATGGGCTGGGCATGAA 57.756 45.000 0.00 0.00 0.00 2.57
800 811 1.779221 TTAATGGGCTGGGCATGAAG 58.221 50.000 0.00 0.00 0.00 3.02
801 812 0.106066 TAATGGGCTGGGCATGAAGG 60.106 55.000 0.00 0.00 0.00 3.46
802 813 4.764771 TGGGCTGGGCATGAAGGC 62.765 66.667 0.00 2.48 43.27 4.35
811 822 3.179925 GCATGAAGGCCTGACATCA 57.820 52.632 18.90 13.84 0.00 3.07
812 823 1.022735 GCATGAAGGCCTGACATCAG 58.977 55.000 18.90 12.17 43.40 2.90
834 845 8.331730 TCAGGCATCTGATGAATATGTTAATG 57.668 34.615 21.30 4.36 44.39 1.90
835 846 8.158789 TCAGGCATCTGATGAATATGTTAATGA 58.841 33.333 21.30 6.29 44.39 2.57
836 847 8.789762 CAGGCATCTGATGAATATGTTAATGAA 58.210 33.333 21.30 0.00 43.49 2.57
837 848 8.790718 AGGCATCTGATGAATATGTTAATGAAC 58.209 33.333 21.30 0.00 36.00 3.18
838 849 8.790718 GGCATCTGATGAATATGTTAATGAACT 58.209 33.333 21.30 0.00 36.45 3.01
839 850 9.608617 GCATCTGATGAATATGTTAATGAACTG 57.391 33.333 21.30 0.00 36.45 3.16
841 852 8.681486 TCTGATGAATATGTTAATGAACTGGG 57.319 34.615 0.00 0.00 36.45 4.45
842 853 7.229306 TCTGATGAATATGTTAATGAACTGGGC 59.771 37.037 0.00 0.00 36.45 5.36
843 854 6.832900 TGATGAATATGTTAATGAACTGGGCA 59.167 34.615 0.00 0.00 36.45 5.36
844 855 7.506599 TGATGAATATGTTAATGAACTGGGCAT 59.493 33.333 0.00 0.00 36.45 4.40
845 856 7.275888 TGAATATGTTAATGAACTGGGCATC 57.724 36.000 0.00 0.00 36.45 3.91
846 857 5.947228 ATATGTTAATGAACTGGGCATCG 57.053 39.130 0.00 0.00 36.45 3.84
847 858 3.342377 TGTTAATGAACTGGGCATCGA 57.658 42.857 0.00 0.00 36.45 3.59
848 859 3.006940 TGTTAATGAACTGGGCATCGAC 58.993 45.455 0.00 0.00 36.45 4.20
849 860 3.270877 GTTAATGAACTGGGCATCGACT 58.729 45.455 0.00 0.00 32.40 4.18
850 861 4.081365 TGTTAATGAACTGGGCATCGACTA 60.081 41.667 0.00 0.00 36.45 2.59
851 862 2.604046 ATGAACTGGGCATCGACTAC 57.396 50.000 0.00 0.00 0.00 2.73
852 863 1.262417 TGAACTGGGCATCGACTACA 58.738 50.000 0.00 0.00 0.00 2.74
853 864 1.831106 TGAACTGGGCATCGACTACAT 59.169 47.619 0.00 0.00 0.00 2.29
854 865 2.236146 TGAACTGGGCATCGACTACATT 59.764 45.455 0.00 0.00 0.00 2.71
855 866 2.315925 ACTGGGCATCGACTACATTG 57.684 50.000 0.00 0.00 0.00 2.82
856 867 1.555075 ACTGGGCATCGACTACATTGT 59.445 47.619 0.00 0.00 0.00 2.71
857 868 1.935873 CTGGGCATCGACTACATTGTG 59.064 52.381 0.00 0.00 0.00 3.33
858 869 1.299541 GGGCATCGACTACATTGTGG 58.700 55.000 0.00 0.00 0.00 4.17
859 870 1.134521 GGGCATCGACTACATTGTGGA 60.135 52.381 7.20 0.00 0.00 4.02
860 871 2.627945 GGCATCGACTACATTGTGGAA 58.372 47.619 7.20 0.00 0.00 3.53
861 872 2.609459 GGCATCGACTACATTGTGGAAG 59.391 50.000 7.20 0.81 0.00 3.46
862 873 2.609459 GCATCGACTACATTGTGGAAGG 59.391 50.000 7.20 0.00 0.00 3.46
863 874 2.380084 TCGACTACATTGTGGAAGGC 57.620 50.000 7.20 0.00 0.00 4.35
864 875 1.066430 TCGACTACATTGTGGAAGGCC 60.066 52.381 7.20 0.00 0.00 5.19
865 876 1.066143 CGACTACATTGTGGAAGGCCT 60.066 52.381 0.00 0.00 34.31 5.19
866 877 2.167693 CGACTACATTGTGGAAGGCCTA 59.832 50.000 5.16 0.00 34.31 3.93
867 878 3.369052 CGACTACATTGTGGAAGGCCTAA 60.369 47.826 5.16 0.00 34.31 2.69
868 879 3.939592 GACTACATTGTGGAAGGCCTAAC 59.060 47.826 5.16 5.88 34.31 2.34
869 880 2.969821 ACATTGTGGAAGGCCTAACA 57.030 45.000 5.16 8.91 34.31 2.41
870 881 3.456380 ACATTGTGGAAGGCCTAACAT 57.544 42.857 5.16 0.00 34.31 2.71
871 882 3.356290 ACATTGTGGAAGGCCTAACATC 58.644 45.455 5.16 0.00 34.31 3.06
872 883 3.245229 ACATTGTGGAAGGCCTAACATCA 60.245 43.478 5.16 6.73 34.31 3.07
873 884 2.489938 TGTGGAAGGCCTAACATCAC 57.510 50.000 5.16 11.01 34.31 3.06
874 885 1.338674 TGTGGAAGGCCTAACATCACG 60.339 52.381 5.16 0.00 34.31 4.35
875 886 1.066430 GTGGAAGGCCTAACATCACGA 60.066 52.381 5.16 0.00 34.31 4.35
876 887 1.626321 TGGAAGGCCTAACATCACGAA 59.374 47.619 5.16 0.00 34.31 3.85
877 888 2.238646 TGGAAGGCCTAACATCACGAAT 59.761 45.455 5.16 0.00 34.31 3.34
878 889 3.452990 TGGAAGGCCTAACATCACGAATA 59.547 43.478 5.16 0.00 34.31 1.75
879 890 4.102524 TGGAAGGCCTAACATCACGAATAT 59.897 41.667 5.16 0.00 34.31 1.28
880 891 5.305902 TGGAAGGCCTAACATCACGAATATA 59.694 40.000 5.16 0.00 34.31 0.86
881 892 6.013725 TGGAAGGCCTAACATCACGAATATAT 60.014 38.462 5.16 0.00 34.31 0.86
882 893 7.179516 TGGAAGGCCTAACATCACGAATATATA 59.820 37.037 5.16 0.00 34.31 0.86
883 894 8.204836 GGAAGGCCTAACATCACGAATATATAT 58.795 37.037 5.16 0.00 0.00 0.86
884 895 8.948631 AAGGCCTAACATCACGAATATATATG 57.051 34.615 5.16 0.00 0.00 1.78
885 896 8.306313 AGGCCTAACATCACGAATATATATGA 57.694 34.615 1.29 0.00 0.00 2.15
886 897 8.928448 AGGCCTAACATCACGAATATATATGAT 58.072 33.333 1.29 0.00 31.93 2.45
907 918 7.889873 TGATGAATATTTTAATGAACCGGGT 57.110 32.000 6.32 0.00 0.00 5.28
908 919 7.936584 TGATGAATATTTTAATGAACCGGGTC 58.063 34.615 14.24 14.24 0.00 4.46
909 920 6.366315 TGAATATTTTAATGAACCGGGTCG 57.634 37.500 16.31 0.00 0.00 4.79
910 921 6.114089 TGAATATTTTAATGAACCGGGTCGA 58.886 36.000 16.31 4.38 0.00 4.20
911 922 5.996669 ATATTTTAATGAACCGGGTCGAC 57.003 39.130 16.31 7.13 0.00 4.20
912 923 2.097680 TTTAATGAACCGGGTCGACC 57.902 50.000 27.04 27.04 0.00 4.79
913 924 0.975135 TTAATGAACCGGGTCGACCA 59.025 50.000 34.40 14.72 40.22 4.02
914 925 0.247185 TAATGAACCGGGTCGACCAC 59.753 55.000 34.40 22.34 40.22 4.16
915 926 1.760479 AATGAACCGGGTCGACCACA 61.760 55.000 34.40 23.57 40.22 4.17
916 927 1.550130 ATGAACCGGGTCGACCACAT 61.550 55.000 34.40 24.53 40.22 3.21
917 928 1.004200 GAACCGGGTCGACCACATT 60.004 57.895 34.40 23.66 40.22 2.71
918 929 1.296056 GAACCGGGTCGACCACATTG 61.296 60.000 34.40 19.20 40.22 2.82
919 930 2.047213 AACCGGGTCGACCACATTGT 62.047 55.000 34.40 19.82 40.22 2.71
920 931 2.032634 CCGGGTCGACCACATTGTG 61.033 63.158 34.40 14.57 40.22 3.33
921 932 2.677003 CGGGTCGACCACATTGTGC 61.677 63.158 34.40 14.40 40.22 4.57
922 933 1.599518 GGGTCGACCACATTGTGCA 60.600 57.895 34.40 0.00 39.85 4.57
923 934 1.169661 GGGTCGACCACATTGTGCAA 61.170 55.000 34.40 0.00 39.85 4.08
924 935 0.238289 GGTCGACCACATTGTGCAAG 59.762 55.000 29.75 4.56 35.64 4.01
925 936 0.238289 GTCGACCACATTGTGCAAGG 59.762 55.000 11.41 0.28 31.34 3.61
926 937 1.081242 CGACCACATTGTGCAAGGC 60.081 57.895 11.41 0.00 31.34 4.35
927 938 1.518056 CGACCACATTGTGCAAGGCT 61.518 55.000 11.41 0.00 31.34 4.58
928 939 0.675633 GACCACATTGTGCAAGGCTT 59.324 50.000 11.41 0.00 31.34 4.35
929 940 1.885887 GACCACATTGTGCAAGGCTTA 59.114 47.619 11.41 0.00 31.34 3.09
930 941 2.295909 GACCACATTGTGCAAGGCTTAA 59.704 45.455 11.41 0.00 31.34 1.85
931 942 2.035832 ACCACATTGTGCAAGGCTTAAC 59.964 45.455 11.41 2.11 31.34 2.01
932 943 2.035704 CCACATTGTGCAAGGCTTAACA 59.964 45.455 11.41 10.06 31.34 2.41
933 944 3.306225 CCACATTGTGCAAGGCTTAACAT 60.306 43.478 11.41 4.43 31.34 2.71
934 945 3.922240 CACATTGTGCAAGGCTTAACATC 59.078 43.478 13.76 5.76 0.00 3.06
935 946 3.573538 ACATTGTGCAAGGCTTAACATCA 59.426 39.130 13.76 7.73 0.00 3.07
936 947 3.641437 TTGTGCAAGGCTTAACATCAC 57.359 42.857 13.76 10.66 0.00 3.06
937 948 1.535028 TGTGCAAGGCTTAACATCACG 59.465 47.619 10.06 0.00 0.00 4.35
938 949 1.804151 GTGCAAGGCTTAACATCACGA 59.196 47.619 0.00 0.00 0.00 4.35
939 950 2.225491 GTGCAAGGCTTAACATCACGAA 59.775 45.455 0.00 0.00 0.00 3.85
940 951 3.081061 TGCAAGGCTTAACATCACGAAT 58.919 40.909 0.00 0.00 0.00 3.34
941 952 3.126858 TGCAAGGCTTAACATCACGAATC 59.873 43.478 0.00 0.00 0.00 2.52
942 953 3.375299 GCAAGGCTTAACATCACGAATCT 59.625 43.478 0.00 0.00 0.00 2.40
943 954 4.728882 GCAAGGCTTAACATCACGAATCTG 60.729 45.833 0.00 0.00 0.00 2.90
944 955 4.471904 AGGCTTAACATCACGAATCTGA 57.528 40.909 0.00 0.00 0.00 3.27
945 956 5.028549 AGGCTTAACATCACGAATCTGAT 57.971 39.130 0.00 0.00 0.00 2.90
954 965 3.534554 TCACGAATCTGATGATTGTGGG 58.465 45.455 8.97 3.95 42.43 4.61
955 966 3.197549 TCACGAATCTGATGATTGTGGGA 59.802 43.478 8.97 5.57 42.43 4.37
956 967 3.940852 CACGAATCTGATGATTGTGGGAA 59.059 43.478 0.00 0.00 42.43 3.97
957 968 3.941483 ACGAATCTGATGATTGTGGGAAC 59.059 43.478 0.00 0.00 42.43 3.62
958 969 3.001634 CGAATCTGATGATTGTGGGAACG 59.998 47.826 0.00 0.00 42.43 3.95
959 970 1.737838 TCTGATGATTGTGGGAACGC 58.262 50.000 0.00 0.00 42.66 4.84
969 980 1.459450 GTGGGAACGCATATGGTTGT 58.541 50.000 12.50 0.00 41.67 3.32
970 981 1.816224 GTGGGAACGCATATGGTTGTT 59.184 47.619 12.50 1.35 41.67 2.83
971 982 2.230266 GTGGGAACGCATATGGTTGTTT 59.770 45.455 12.50 0.00 41.67 2.83
972 983 2.230025 TGGGAACGCATATGGTTGTTTG 59.770 45.455 12.50 0.00 0.00 2.93
973 984 2.490115 GGGAACGCATATGGTTGTTTGA 59.510 45.455 12.50 0.00 0.00 2.69
974 985 3.427503 GGGAACGCATATGGTTGTTTGAG 60.428 47.826 12.50 0.00 0.00 3.02
975 986 2.919666 ACGCATATGGTTGTTTGAGC 57.080 45.000 4.56 0.00 0.00 4.26
976 987 2.436417 ACGCATATGGTTGTTTGAGCT 58.564 42.857 4.56 0.00 0.00 4.09
977 988 3.605634 ACGCATATGGTTGTTTGAGCTA 58.394 40.909 4.56 0.00 0.00 3.32
978 989 3.623060 ACGCATATGGTTGTTTGAGCTAG 59.377 43.478 4.56 0.00 0.00 3.42
979 990 3.546815 CGCATATGGTTGTTTGAGCTAGC 60.547 47.826 6.62 6.62 0.00 3.42
980 991 3.629398 GCATATGGTTGTTTGAGCTAGCT 59.371 43.478 19.45 19.45 0.00 3.32
981 992 4.260948 GCATATGGTTGTTTGAGCTAGCTC 60.261 45.833 33.47 33.47 43.01 4.09
982 993 1.795768 TGGTTGTTTGAGCTAGCTCG 58.204 50.000 33.55 0.00 45.48 5.03
983 994 1.070134 TGGTTGTTTGAGCTAGCTCGT 59.930 47.619 33.55 7.50 45.48 4.18
984 995 1.461127 GGTTGTTTGAGCTAGCTCGTG 59.539 52.381 33.55 0.00 45.48 4.35
985 996 2.135933 GTTGTTTGAGCTAGCTCGTGT 58.864 47.619 33.55 6.69 45.48 4.49
986 997 2.526304 TGTTTGAGCTAGCTCGTGTT 57.474 45.000 33.55 5.90 45.48 3.32
987 998 2.135139 TGTTTGAGCTAGCTCGTGTTG 58.865 47.619 33.55 0.00 45.48 3.33
988 999 1.136224 GTTTGAGCTAGCTCGTGTTGC 60.136 52.381 33.55 18.90 45.48 4.17
989 1000 0.033366 TTGAGCTAGCTCGTGTTGCA 59.967 50.000 33.55 16.65 45.48 4.08
990 1001 0.389037 TGAGCTAGCTCGTGTTGCAG 60.389 55.000 33.55 0.00 45.48 4.41
991 1002 1.691215 GAGCTAGCTCGTGTTGCAGC 61.691 60.000 28.04 2.91 36.00 5.25
993 1004 0.458543 GCTAGCTCGTGTTGCAGCTA 60.459 55.000 7.70 2.49 44.45 3.32
994 1005 3.721625 TAGCTCGTGTTGCAGCTAG 57.278 52.632 1.17 0.00 44.45 3.42
995 1006 0.458543 TAGCTCGTGTTGCAGCTAGC 60.459 55.000 6.62 6.62 44.45 3.42
1005 1016 3.465990 GCAGCTAGCACTCATGGAA 57.534 52.632 18.83 0.00 44.79 3.53
1006 1017 1.297664 GCAGCTAGCACTCATGGAAG 58.702 55.000 18.83 0.00 44.79 3.46
1007 1018 1.950828 CAGCTAGCACTCATGGAAGG 58.049 55.000 18.83 0.00 0.00 3.46
1008 1019 1.483827 CAGCTAGCACTCATGGAAGGA 59.516 52.381 18.83 0.00 0.00 3.36
1015 1026 3.721793 CTCATGGAAGGAGCCATCC 57.278 57.895 3.87 3.87 45.36 3.51
1016 1027 0.110104 CTCATGGAAGGAGCCATCCC 59.890 60.000 8.21 0.00 45.36 3.85
1017 1028 1.152368 CATGGAAGGAGCCATCCCC 59.848 63.158 8.21 0.00 45.36 4.81
1018 1029 1.309013 ATGGAAGGAGCCATCCCCA 60.309 57.895 8.21 0.85 45.36 4.96
1019 1030 1.358830 ATGGAAGGAGCCATCCCCAG 61.359 60.000 8.21 0.00 45.36 4.45
1028 1039 4.757355 CATCCCCAGCCGGCCAAA 62.757 66.667 26.15 4.73 0.00 3.28
1029 1040 4.759205 ATCCCCAGCCGGCCAAAC 62.759 66.667 26.15 0.00 0.00 2.93
1034 1045 3.726517 CAGCCGGCCAAACACGAG 61.727 66.667 26.15 0.00 0.00 4.18
1037 1048 2.593436 CCGGCCAAACACGAGGTT 60.593 61.111 2.24 0.00 42.98 3.50
1038 1049 1.301874 CCGGCCAAACACGAGGTTA 60.302 57.895 2.24 0.00 39.29 2.85
1039 1050 1.296056 CCGGCCAAACACGAGGTTAG 61.296 60.000 2.24 0.00 39.29 2.34
1040 1051 1.873863 GGCCAAACACGAGGTTAGC 59.126 57.895 0.00 0.00 39.29 3.09
1041 1052 1.583495 GGCCAAACACGAGGTTAGCC 61.583 60.000 4.18 4.18 45.95 3.93
1042 1053 1.583495 GCCAAACACGAGGTTAGCCC 61.583 60.000 0.00 0.00 39.29 5.19
1043 1054 1.296056 CCAAACACGAGGTTAGCCCG 61.296 60.000 5.24 5.24 39.29 6.13
1044 1055 0.320073 CAAACACGAGGTTAGCCCGA 60.320 55.000 12.14 0.00 39.29 5.14
1045 1056 0.320160 AAACACGAGGTTAGCCCGAC 60.320 55.000 12.14 0.00 39.29 4.79
1049 1060 1.034292 ACGAGGTTAGCCCGACTACC 61.034 60.000 12.14 0.00 38.74 3.18
1055 1066 1.479323 GTTAGCCCGACTACCACATCA 59.521 52.381 0.00 0.00 0.00 3.07
1062 1073 2.196749 CGACTACCACATCATGTCTGC 58.803 52.381 0.00 0.00 0.00 4.26
1089 1104 2.359478 ATTTCTCGGCGGCGGTTT 60.359 55.556 31.73 9.35 0.00 3.27
1178 1193 2.876219 GGAGGAGTCACGGTCGTC 59.124 66.667 0.00 0.00 0.00 4.20
1230 1245 1.213013 GCGGTCGAGAAGCTCAGAA 59.787 57.895 0.00 0.00 0.00 3.02
1244 1259 4.021925 AGAACGCTGGGGCTCACC 62.022 66.667 0.00 0.00 36.09 4.02
1306 1321 3.333969 GAGCATCGCCACGCTAGC 61.334 66.667 4.06 4.06 38.99 3.42
1364 1379 2.225727 CCTGGCAAGTTTTAACTCCGTC 59.774 50.000 0.00 0.00 38.57 4.79
1372 1387 3.135994 GTTTTAACTCCGTCTGCTTCCA 58.864 45.455 0.00 0.00 0.00 3.53
1374 1389 3.695830 TTAACTCCGTCTGCTTCCATT 57.304 42.857 0.00 0.00 0.00 3.16
1375 1390 2.568623 AACTCCGTCTGCTTCCATTT 57.431 45.000 0.00 0.00 0.00 2.32
1376 1391 2.100605 ACTCCGTCTGCTTCCATTTC 57.899 50.000 0.00 0.00 0.00 2.17
1377 1392 1.339151 ACTCCGTCTGCTTCCATTTCC 60.339 52.381 0.00 0.00 0.00 3.13
1378 1393 0.690192 TCCGTCTGCTTCCATTTCCA 59.310 50.000 0.00 0.00 0.00 3.53
1380 1395 1.402968 CCGTCTGCTTCCATTTCCATG 59.597 52.381 0.00 0.00 0.00 3.66
1381 1396 1.202222 CGTCTGCTTCCATTTCCATGC 60.202 52.381 0.00 0.00 0.00 4.06
1386 1401 2.026641 GCTTCCATTTCCATGCTGCTA 58.973 47.619 0.00 0.00 0.00 3.49
1388 1403 3.285484 CTTCCATTTCCATGCTGCTAGT 58.715 45.455 0.00 0.00 0.00 2.57
1389 1404 4.454678 CTTCCATTTCCATGCTGCTAGTA 58.545 43.478 0.00 0.00 0.00 1.82
1390 1405 4.502105 TCCATTTCCATGCTGCTAGTAA 57.498 40.909 0.00 0.00 0.00 2.24
1391 1406 4.454678 TCCATTTCCATGCTGCTAGTAAG 58.545 43.478 0.00 0.00 0.00 2.34
1392 1407 3.567164 CCATTTCCATGCTGCTAGTAAGG 59.433 47.826 0.00 0.00 0.00 2.69
1393 1408 2.332063 TTCCATGCTGCTAGTAAGGC 57.668 50.000 0.00 0.00 0.00 4.35
1394 1409 1.500474 TCCATGCTGCTAGTAAGGCT 58.500 50.000 0.00 0.00 0.00 4.58
1395 1410 1.139654 TCCATGCTGCTAGTAAGGCTG 59.860 52.381 0.00 0.00 0.00 4.85
1468 1492 0.109179 TGAACAATGCTGCAATCGCC 60.109 50.000 6.36 0.00 37.32 5.54
1520 1886 3.113260 ACGAGGAAAAGGTGAGTGAAG 57.887 47.619 0.00 0.00 0.00 3.02
1522 1888 2.802816 CGAGGAAAAGGTGAGTGAAGTG 59.197 50.000 0.00 0.00 0.00 3.16
1524 1890 3.809905 AGGAAAAGGTGAGTGAAGTGTC 58.190 45.455 0.00 0.00 0.00 3.67
1525 1891 3.456277 AGGAAAAGGTGAGTGAAGTGTCT 59.544 43.478 0.00 0.00 0.00 3.41
1526 1892 4.654262 AGGAAAAGGTGAGTGAAGTGTCTA 59.346 41.667 0.00 0.00 0.00 2.59
1527 1893 5.130477 AGGAAAAGGTGAGTGAAGTGTCTAA 59.870 40.000 0.00 0.00 0.00 2.10
1528 1894 5.998363 GGAAAAGGTGAGTGAAGTGTCTAAT 59.002 40.000 0.00 0.00 0.00 1.73
1533 1903 8.779354 AAGGTGAGTGAAGTGTCTAATTAATC 57.221 34.615 0.00 0.00 0.00 1.75
1561 1931 2.613595 GCATTTGCTCGGACATGTATCA 59.386 45.455 0.00 0.00 38.21 2.15
1562 1932 3.251729 GCATTTGCTCGGACATGTATCAT 59.748 43.478 0.00 0.00 38.21 2.45
1563 1933 4.779987 CATTTGCTCGGACATGTATCATG 58.220 43.478 0.00 7.99 0.00 3.07
1564 1934 3.541996 TTGCTCGGACATGTATCATGT 57.458 42.857 14.01 14.01 34.52 3.21
1565 1935 4.664150 TTGCTCGGACATGTATCATGTA 57.336 40.909 14.08 0.65 31.52 2.29
1567 1937 4.559153 TGCTCGGACATGTATCATGTATG 58.441 43.478 14.08 10.21 31.52 2.39
1579 1949 6.515832 TGTATCATGTATGTAGGCTGAACAG 58.484 40.000 0.00 0.00 0.00 3.16
1583 1953 6.573434 TCATGTATGTAGGCTGAACAGTTAG 58.427 40.000 0.00 0.00 0.00 2.34
1584 1954 4.755411 TGTATGTAGGCTGAACAGTTAGC 58.245 43.478 0.00 6.32 39.17 3.09
1717 2101 1.607467 GCATGTCACCCAAGCCCTT 60.607 57.895 0.00 0.00 31.61 3.95
1747 2131 2.015587 CTGCTGCAATCTTCCTCTTCC 58.984 52.381 3.02 0.00 0.00 3.46
1756 2140 0.985490 CTTCCTCTTCCTCCCAGGGG 60.985 65.000 5.33 0.92 35.59 4.79
1883 2289 5.880054 TTCGATCGATCTATGTCTGCATA 57.120 39.130 20.18 0.00 36.58 3.14
1957 2365 2.760385 GGAGGAGAGGGTGGACGG 60.760 72.222 0.00 0.00 0.00 4.79
1958 2366 2.359404 GAGGAGAGGGTGGACGGA 59.641 66.667 0.00 0.00 0.00 4.69
1959 2367 1.075896 GAGGAGAGGGTGGACGGAT 60.076 63.158 0.00 0.00 0.00 4.18
1960 2368 0.688087 GAGGAGAGGGTGGACGGATT 60.688 60.000 0.00 0.00 0.00 3.01
1961 2369 0.252742 AGGAGAGGGTGGACGGATTT 60.253 55.000 0.00 0.00 0.00 2.17
1962 2370 0.618981 GGAGAGGGTGGACGGATTTT 59.381 55.000 0.00 0.00 0.00 1.82
1963 2371 1.004394 GGAGAGGGTGGACGGATTTTT 59.996 52.381 0.00 0.00 0.00 1.94
1980 2388 1.796017 TTTTGTCCAAAAGGACCCCC 58.204 50.000 11.79 0.00 38.04 5.40
1982 2390 0.187361 TTGTCCAAAAGGACCCCCTG 59.813 55.000 11.79 0.00 43.48 4.45
1983 2391 1.606601 GTCCAAAAGGACCCCCTGC 60.607 63.158 3.27 0.00 43.48 4.85
1984 2392 2.283894 CCAAAAGGACCCCCTGCC 60.284 66.667 0.00 0.00 43.48 4.85
1985 2393 2.676471 CAAAAGGACCCCCTGCCG 60.676 66.667 0.00 0.00 43.48 5.69
1986 2394 2.856988 AAAAGGACCCCCTGCCGA 60.857 61.111 0.00 0.00 43.48 5.54
1987 2395 2.466186 AAAAGGACCCCCTGCCGAA 61.466 57.895 0.00 0.00 43.48 4.30
1988 2396 2.708593 AAAAGGACCCCCTGCCGAAC 62.709 60.000 0.00 0.00 43.48 3.95
2041 2449 2.975489 AGCTACCGATTTCAGGATGGAT 59.025 45.455 0.00 0.00 36.16 3.41
2147 2555 3.252974 CTGAAAGGACTTATGCGGAGT 57.747 47.619 0.00 0.00 0.00 3.85
2648 3056 9.607988 TTGTAGTCTCTTTGAAAATGTAACTGA 57.392 29.630 0.00 0.00 0.00 3.41
2987 3395 3.868985 GACGGTGGTGGTGGTGGT 61.869 66.667 0.00 0.00 0.00 4.16
2988 3396 4.183858 ACGGTGGTGGTGGTGGTG 62.184 66.667 0.00 0.00 0.00 4.17
2989 3397 4.947147 CGGTGGTGGTGGTGGTGG 62.947 72.222 0.00 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.172505 TCCACTTTATGTCATCGGCCAT 59.827 45.455 2.24 0.00 0.00 4.40
183 190 2.032924 CGTCCAAACCCTGTTCTTGTTC 59.967 50.000 0.00 0.00 0.00 3.18
619 630 6.347696 TCCTCAACAAATGCAGAAACAAAAT 58.652 32.000 0.00 0.00 0.00 1.82
628 639 5.392380 GGTCATTACTCCTCAACAAATGCAG 60.392 44.000 0.00 0.00 0.00 4.41
629 640 4.458989 GGTCATTACTCCTCAACAAATGCA 59.541 41.667 0.00 0.00 0.00 3.96
731 742 3.500680 TGAGAAGTTTATTTGGCACGGTC 59.499 43.478 0.00 0.00 0.00 4.79
732 743 3.482436 TGAGAAGTTTATTTGGCACGGT 58.518 40.909 0.00 0.00 0.00 4.83
733 744 3.119849 CCTGAGAAGTTTATTTGGCACGG 60.120 47.826 0.00 0.00 0.00 4.94
734 745 3.119849 CCCTGAGAAGTTTATTTGGCACG 60.120 47.826 0.00 0.00 0.00 5.34
735 746 3.367395 GCCCTGAGAAGTTTATTTGGCAC 60.367 47.826 0.00 0.00 36.40 5.01
736 747 2.825532 GCCCTGAGAAGTTTATTTGGCA 59.174 45.455 0.00 0.00 36.40 4.92
737 748 2.825532 TGCCCTGAGAAGTTTATTTGGC 59.174 45.455 0.00 0.00 36.90 4.52
738 749 4.201950 CGATGCCCTGAGAAGTTTATTTGG 60.202 45.833 0.00 0.00 0.00 3.28
739 750 4.731773 GCGATGCCCTGAGAAGTTTATTTG 60.732 45.833 0.00 0.00 0.00 2.32
740 751 3.378427 GCGATGCCCTGAGAAGTTTATTT 59.622 43.478 0.00 0.00 0.00 1.40
741 752 2.945668 GCGATGCCCTGAGAAGTTTATT 59.054 45.455 0.00 0.00 0.00 1.40
742 753 2.171448 AGCGATGCCCTGAGAAGTTTAT 59.829 45.455 0.00 0.00 0.00 1.40
743 754 1.555075 AGCGATGCCCTGAGAAGTTTA 59.445 47.619 0.00 0.00 0.00 2.01
744 755 0.326264 AGCGATGCCCTGAGAAGTTT 59.674 50.000 0.00 0.00 0.00 2.66
745 756 0.392193 CAGCGATGCCCTGAGAAGTT 60.392 55.000 0.00 0.00 32.03 2.66
746 757 1.220206 CAGCGATGCCCTGAGAAGT 59.780 57.895 0.00 0.00 32.03 3.01
747 758 2.178890 GCAGCGATGCCCTGAGAAG 61.179 63.158 16.30 0.00 32.03 2.85
748 759 2.124983 GCAGCGATGCCCTGAGAA 60.125 61.111 16.30 0.00 32.03 2.87
749 760 3.079478 AGCAGCGATGCCCTGAGA 61.079 61.111 24.00 0.00 34.90 3.27
750 761 2.588314 GAGCAGCGATGCCCTGAG 60.588 66.667 24.00 0.00 34.90 3.35
751 762 3.381333 CTGAGCAGCGATGCCCTGA 62.381 63.158 24.00 2.46 34.90 3.86
752 763 2.895865 CTGAGCAGCGATGCCCTG 60.896 66.667 24.00 11.34 34.90 4.45
753 764 4.853050 GCTGAGCAGCGATGCCCT 62.853 66.667 24.00 4.08 45.29 5.19
762 773 1.959042 AAATATGTCCGGCTGAGCAG 58.041 50.000 6.82 0.97 0.00 4.24
763 774 2.418368 AAAATATGTCCGGCTGAGCA 57.582 45.000 6.82 0.00 0.00 4.26
764 775 4.320494 CCATTAAAATATGTCCGGCTGAGC 60.320 45.833 0.00 0.00 0.00 4.26
765 776 4.216257 CCCATTAAAATATGTCCGGCTGAG 59.784 45.833 0.00 0.00 0.00 3.35
766 777 4.141287 CCCATTAAAATATGTCCGGCTGA 58.859 43.478 0.00 0.00 0.00 4.26
767 778 3.305335 GCCCATTAAAATATGTCCGGCTG 60.305 47.826 0.00 0.00 31.56 4.85
768 779 2.890945 GCCCATTAAAATATGTCCGGCT 59.109 45.455 0.00 0.00 31.56 5.52
769 780 2.890945 AGCCCATTAAAATATGTCCGGC 59.109 45.455 0.00 0.00 33.28 6.13
770 781 3.255642 CCAGCCCATTAAAATATGTCCGG 59.744 47.826 0.00 0.00 0.00 5.14
771 782 3.255642 CCCAGCCCATTAAAATATGTCCG 59.744 47.826 0.00 0.00 0.00 4.79
772 783 3.006859 GCCCAGCCCATTAAAATATGTCC 59.993 47.826 0.00 0.00 0.00 4.02
773 784 3.640967 TGCCCAGCCCATTAAAATATGTC 59.359 43.478 0.00 0.00 0.00 3.06
774 785 3.652055 TGCCCAGCCCATTAAAATATGT 58.348 40.909 0.00 0.00 0.00 2.29
775 786 4.283978 TCATGCCCAGCCCATTAAAATATG 59.716 41.667 0.00 0.00 0.00 1.78
776 787 4.491675 TCATGCCCAGCCCATTAAAATAT 58.508 39.130 0.00 0.00 0.00 1.28
777 788 3.921104 TCATGCCCAGCCCATTAAAATA 58.079 40.909 0.00 0.00 0.00 1.40
778 789 2.761809 TCATGCCCAGCCCATTAAAAT 58.238 42.857 0.00 0.00 0.00 1.82
779 790 2.244486 TCATGCCCAGCCCATTAAAA 57.756 45.000 0.00 0.00 0.00 1.52
780 791 2.109774 CTTCATGCCCAGCCCATTAAA 58.890 47.619 0.00 0.00 0.00 1.52
781 792 1.688942 CCTTCATGCCCAGCCCATTAA 60.689 52.381 0.00 0.00 0.00 1.40
782 793 0.106066 CCTTCATGCCCAGCCCATTA 60.106 55.000 0.00 0.00 0.00 1.90
783 794 1.382146 CCTTCATGCCCAGCCCATT 60.382 57.895 0.00 0.00 0.00 3.16
784 795 2.281091 CCTTCATGCCCAGCCCAT 59.719 61.111 0.00 0.00 0.00 4.00
785 796 4.764771 GCCTTCATGCCCAGCCCA 62.765 66.667 0.00 0.00 0.00 5.36
793 804 1.022735 CTGATGTCAGGCCTTCATGC 58.977 55.000 20.76 13.85 40.20 4.06
810 821 8.331730 TCATTAACATATTCATCAGATGCCTG 57.668 34.615 5.41 3.23 41.74 4.85
811 822 8.790718 GTTCATTAACATATTCATCAGATGCCT 58.209 33.333 5.41 0.00 35.56 4.75
812 823 8.790718 AGTTCATTAACATATTCATCAGATGCC 58.209 33.333 5.41 0.00 38.12 4.40
813 824 9.608617 CAGTTCATTAACATATTCATCAGATGC 57.391 33.333 5.41 0.00 38.12 3.91
815 826 9.293404 CCCAGTTCATTAACATATTCATCAGAT 57.707 33.333 0.00 0.00 38.12 2.90
816 827 7.229306 GCCCAGTTCATTAACATATTCATCAGA 59.771 37.037 0.00 0.00 38.12 3.27
817 828 7.013559 TGCCCAGTTCATTAACATATTCATCAG 59.986 37.037 0.00 0.00 38.12 2.90
818 829 6.832900 TGCCCAGTTCATTAACATATTCATCA 59.167 34.615 0.00 0.00 38.12 3.07
819 830 7.275888 TGCCCAGTTCATTAACATATTCATC 57.724 36.000 0.00 0.00 38.12 2.92
820 831 7.308770 CGATGCCCAGTTCATTAACATATTCAT 60.309 37.037 0.00 0.00 38.12 2.57
821 832 6.017192 CGATGCCCAGTTCATTAACATATTCA 60.017 38.462 0.00 0.00 38.12 2.57
822 833 6.204688 TCGATGCCCAGTTCATTAACATATTC 59.795 38.462 0.00 0.00 38.12 1.75
823 834 6.017109 GTCGATGCCCAGTTCATTAACATATT 60.017 38.462 0.00 0.00 38.12 1.28
824 835 5.470098 GTCGATGCCCAGTTCATTAACATAT 59.530 40.000 0.00 0.00 38.12 1.78
825 836 4.814234 GTCGATGCCCAGTTCATTAACATA 59.186 41.667 0.00 0.00 38.12 2.29
826 837 3.627577 GTCGATGCCCAGTTCATTAACAT 59.372 43.478 0.00 0.00 38.12 2.71
827 838 3.006940 GTCGATGCCCAGTTCATTAACA 58.993 45.455 0.00 0.00 38.12 2.41
828 839 3.270877 AGTCGATGCCCAGTTCATTAAC 58.729 45.455 0.00 0.00 35.72 2.01
829 840 3.627395 AGTCGATGCCCAGTTCATTAA 57.373 42.857 0.00 0.00 0.00 1.40
830 841 3.449377 TGTAGTCGATGCCCAGTTCATTA 59.551 43.478 0.00 0.00 0.00 1.90
831 842 2.236146 TGTAGTCGATGCCCAGTTCATT 59.764 45.455 0.00 0.00 0.00 2.57
832 843 1.831106 TGTAGTCGATGCCCAGTTCAT 59.169 47.619 0.00 0.00 0.00 2.57
833 844 1.262417 TGTAGTCGATGCCCAGTTCA 58.738 50.000 0.00 0.00 0.00 3.18
834 845 2.604046 ATGTAGTCGATGCCCAGTTC 57.396 50.000 0.00 0.00 0.00 3.01
835 846 2.027192 ACAATGTAGTCGATGCCCAGTT 60.027 45.455 0.00 0.00 0.00 3.16
836 847 1.555075 ACAATGTAGTCGATGCCCAGT 59.445 47.619 0.00 0.00 0.00 4.00
837 848 1.935873 CACAATGTAGTCGATGCCCAG 59.064 52.381 0.00 0.00 0.00 4.45
838 849 1.406751 CCACAATGTAGTCGATGCCCA 60.407 52.381 0.00 0.00 0.00 5.36
839 850 1.134521 TCCACAATGTAGTCGATGCCC 60.135 52.381 0.00 0.00 0.00 5.36
840 851 2.309528 TCCACAATGTAGTCGATGCC 57.690 50.000 0.00 0.00 0.00 4.40
841 852 2.609459 CCTTCCACAATGTAGTCGATGC 59.391 50.000 0.00 0.00 0.00 3.91
842 853 2.609459 GCCTTCCACAATGTAGTCGATG 59.391 50.000 0.00 0.00 0.00 3.84
843 854 2.420129 GGCCTTCCACAATGTAGTCGAT 60.420 50.000 0.00 0.00 0.00 3.59
844 855 1.066430 GGCCTTCCACAATGTAGTCGA 60.066 52.381 0.00 0.00 0.00 4.20
845 856 1.066143 AGGCCTTCCACAATGTAGTCG 60.066 52.381 0.00 0.00 33.74 4.18
846 857 2.789409 AGGCCTTCCACAATGTAGTC 57.211 50.000 0.00 0.00 33.74 2.59
847 858 3.329520 TGTTAGGCCTTCCACAATGTAGT 59.670 43.478 12.58 0.00 33.74 2.73
848 859 3.950397 TGTTAGGCCTTCCACAATGTAG 58.050 45.455 12.58 0.00 33.74 2.74
849 860 4.018870 TGATGTTAGGCCTTCCACAATGTA 60.019 41.667 12.58 0.00 33.74 2.29
850 861 2.969821 TGTTAGGCCTTCCACAATGT 57.030 45.000 12.58 0.00 33.74 2.71
851 862 3.129287 GTGATGTTAGGCCTTCCACAATG 59.871 47.826 12.58 0.00 33.74 2.82
852 863 3.356290 GTGATGTTAGGCCTTCCACAAT 58.644 45.455 12.58 2.61 33.74 2.71
853 864 2.790433 GTGATGTTAGGCCTTCCACAA 58.210 47.619 12.58 0.00 33.74 3.33
854 865 1.338674 CGTGATGTTAGGCCTTCCACA 60.339 52.381 12.58 12.85 33.74 4.17
855 866 1.066430 TCGTGATGTTAGGCCTTCCAC 60.066 52.381 12.58 11.25 33.74 4.02
856 867 1.271856 TCGTGATGTTAGGCCTTCCA 58.728 50.000 12.58 8.81 33.74 3.53
857 868 2.396590 TTCGTGATGTTAGGCCTTCC 57.603 50.000 12.58 1.67 0.00 3.46
858 869 9.035607 CATATATATTCGTGATGTTAGGCCTTC 57.964 37.037 12.58 1.95 0.00 3.46
859 870 8.758829 TCATATATATTCGTGATGTTAGGCCTT 58.241 33.333 12.58 0.00 0.00 4.35
860 871 8.306313 TCATATATATTCGTGATGTTAGGCCT 57.694 34.615 11.78 11.78 0.00 5.19
861 872 8.982685 CATCATATATATTCGTGATGTTAGGCC 58.017 37.037 18.18 0.00 41.71 5.19
862 873 9.750125 TCATCATATATATTCGTGATGTTAGGC 57.250 33.333 21.90 0.00 45.02 3.93
881 892 9.581289 ACCCGGTTCATTAAAATATTCATCATA 57.419 29.630 0.00 0.00 0.00 2.15
882 893 8.477419 ACCCGGTTCATTAAAATATTCATCAT 57.523 30.769 0.00 0.00 0.00 2.45
883 894 7.254966 CGACCCGGTTCATTAAAATATTCATCA 60.255 37.037 0.00 0.00 0.00 3.07
884 895 7.041644 TCGACCCGGTTCATTAAAATATTCATC 60.042 37.037 0.00 0.00 0.00 2.92
885 896 6.768861 TCGACCCGGTTCATTAAAATATTCAT 59.231 34.615 0.00 0.00 0.00 2.57
886 897 6.037391 GTCGACCCGGTTCATTAAAATATTCA 59.963 38.462 3.51 0.00 0.00 2.57
887 898 6.424683 GTCGACCCGGTTCATTAAAATATTC 58.575 40.000 3.51 0.00 0.00 1.75
888 899 5.297527 GGTCGACCCGGTTCATTAAAATATT 59.702 40.000 24.75 0.00 0.00 1.28
889 900 4.818005 GGTCGACCCGGTTCATTAAAATAT 59.182 41.667 24.75 0.00 0.00 1.28
890 901 4.190772 GGTCGACCCGGTTCATTAAAATA 58.809 43.478 24.75 0.00 0.00 1.40
891 902 3.011818 GGTCGACCCGGTTCATTAAAAT 58.988 45.455 24.75 0.00 0.00 1.82
892 903 2.224475 TGGTCGACCCGGTTCATTAAAA 60.224 45.455 31.19 5.16 35.15 1.52
893 904 1.347050 TGGTCGACCCGGTTCATTAAA 59.653 47.619 31.19 5.38 35.15 1.52
894 905 0.975135 TGGTCGACCCGGTTCATTAA 59.025 50.000 31.19 5.95 35.15 1.40
895 906 0.247185 GTGGTCGACCCGGTTCATTA 59.753 55.000 31.19 6.76 35.15 1.90
896 907 1.004200 GTGGTCGACCCGGTTCATT 60.004 57.895 31.19 0.00 35.15 2.57
897 908 1.550130 ATGTGGTCGACCCGGTTCAT 61.550 55.000 31.19 21.64 35.15 2.57
898 909 1.760479 AATGTGGTCGACCCGGTTCA 61.760 55.000 31.19 20.53 35.15 3.18
899 910 1.004200 AATGTGGTCGACCCGGTTC 60.004 57.895 31.19 16.03 35.15 3.62
900 911 1.302192 CAATGTGGTCGACCCGGTT 60.302 57.895 31.19 18.99 35.15 4.44
901 912 2.345991 CAATGTGGTCGACCCGGT 59.654 61.111 31.19 14.09 35.15 5.28
902 913 2.032634 CACAATGTGGTCGACCCGG 61.033 63.158 31.19 17.44 35.15 5.73
903 914 2.677003 GCACAATGTGGTCGACCCG 61.677 63.158 31.19 16.29 35.15 5.28
904 915 1.169661 TTGCACAATGTGGTCGACCC 61.170 55.000 31.19 21.86 33.64 4.46
905 916 0.238289 CTTGCACAATGTGGTCGACC 59.762 55.000 28.17 28.17 33.64 4.79
906 917 0.238289 CCTTGCACAATGTGGTCGAC 59.762 55.000 15.78 7.13 33.64 4.20
907 918 1.514678 GCCTTGCACAATGTGGTCGA 61.515 55.000 15.78 0.00 33.64 4.20
908 919 1.081242 GCCTTGCACAATGTGGTCG 60.081 57.895 15.78 0.00 33.64 4.79
909 920 0.675633 AAGCCTTGCACAATGTGGTC 59.324 50.000 15.78 0.00 33.64 4.02
910 921 1.993956 TAAGCCTTGCACAATGTGGT 58.006 45.000 15.78 0.00 33.64 4.16
911 922 2.035704 TGTTAAGCCTTGCACAATGTGG 59.964 45.455 15.78 0.00 33.64 4.17
912 923 3.367992 TGTTAAGCCTTGCACAATGTG 57.632 42.857 9.36 9.36 36.51 3.21
913 924 3.573538 TGATGTTAAGCCTTGCACAATGT 59.426 39.130 0.00 0.00 0.00 2.71
914 925 3.922240 GTGATGTTAAGCCTTGCACAATG 59.078 43.478 0.00 0.00 0.00 2.82
915 926 3.366273 CGTGATGTTAAGCCTTGCACAAT 60.366 43.478 0.00 0.00 0.00 2.71
916 927 2.031245 CGTGATGTTAAGCCTTGCACAA 60.031 45.455 0.00 0.00 0.00 3.33
917 928 1.535028 CGTGATGTTAAGCCTTGCACA 59.465 47.619 0.00 0.00 0.00 4.57
918 929 1.804151 TCGTGATGTTAAGCCTTGCAC 59.196 47.619 0.00 0.00 0.00 4.57
919 930 2.177394 TCGTGATGTTAAGCCTTGCA 57.823 45.000 0.00 0.00 0.00 4.08
920 931 3.375299 AGATTCGTGATGTTAAGCCTTGC 59.625 43.478 0.00 0.00 0.00 4.01
921 932 4.631377 TCAGATTCGTGATGTTAAGCCTTG 59.369 41.667 0.00 0.00 0.00 3.61
922 933 4.832248 TCAGATTCGTGATGTTAAGCCTT 58.168 39.130 0.00 0.00 0.00 4.35
923 934 4.471904 TCAGATTCGTGATGTTAAGCCT 57.528 40.909 0.00 0.00 0.00 4.58
924 935 5.088141 CATCAGATTCGTGATGTTAAGCC 57.912 43.478 13.53 0.00 46.00 4.35
932 943 4.132336 CCCACAATCATCAGATTCGTGAT 58.868 43.478 15.64 0.00 42.46 3.06
933 944 3.197549 TCCCACAATCATCAGATTCGTGA 59.802 43.478 15.64 0.00 42.46 4.35
934 945 3.534554 TCCCACAATCATCAGATTCGTG 58.465 45.455 0.00 0.00 42.46 4.35
935 946 3.912496 TCCCACAATCATCAGATTCGT 57.088 42.857 0.00 0.00 42.46 3.85
936 947 3.001634 CGTTCCCACAATCATCAGATTCG 59.998 47.826 0.00 0.00 42.46 3.34
937 948 3.242870 GCGTTCCCACAATCATCAGATTC 60.243 47.826 0.00 0.00 42.46 2.52
938 949 2.684881 GCGTTCCCACAATCATCAGATT 59.315 45.455 0.00 0.00 45.16 2.40
939 950 2.292267 GCGTTCCCACAATCATCAGAT 58.708 47.619 0.00 0.00 35.53 2.90
940 951 1.003003 TGCGTTCCCACAATCATCAGA 59.997 47.619 0.00 0.00 0.00 3.27
941 952 1.452110 TGCGTTCCCACAATCATCAG 58.548 50.000 0.00 0.00 0.00 2.90
942 953 2.127271 ATGCGTTCCCACAATCATCA 57.873 45.000 0.00 0.00 0.00 3.07
943 954 3.058016 CCATATGCGTTCCCACAATCATC 60.058 47.826 0.00 0.00 0.00 2.92
944 955 2.886523 CCATATGCGTTCCCACAATCAT 59.113 45.455 0.00 0.00 0.00 2.45
945 956 2.296792 CCATATGCGTTCCCACAATCA 58.703 47.619 0.00 0.00 0.00 2.57
946 957 2.297701 ACCATATGCGTTCCCACAATC 58.702 47.619 0.00 0.00 0.00 2.67
947 958 2.426738 CAACCATATGCGTTCCCACAAT 59.573 45.455 0.00 0.00 0.00 2.71
948 959 1.815613 CAACCATATGCGTTCCCACAA 59.184 47.619 0.00 0.00 0.00 3.33
949 960 1.271652 ACAACCATATGCGTTCCCACA 60.272 47.619 0.00 0.00 0.00 4.17
950 961 1.459450 ACAACCATATGCGTTCCCAC 58.541 50.000 0.00 0.00 0.00 4.61
951 962 2.208132 AACAACCATATGCGTTCCCA 57.792 45.000 0.00 0.00 0.00 4.37
952 963 2.490115 TCAAACAACCATATGCGTTCCC 59.510 45.455 0.00 0.00 0.00 3.97
953 964 3.758300 CTCAAACAACCATATGCGTTCC 58.242 45.455 0.00 0.00 0.00 3.62
954 965 3.119849 AGCTCAAACAACCATATGCGTTC 60.120 43.478 0.00 0.00 0.00 3.95
955 966 2.819608 AGCTCAAACAACCATATGCGTT 59.180 40.909 0.00 0.52 0.00 4.84
956 967 2.436417 AGCTCAAACAACCATATGCGT 58.564 42.857 0.00 0.00 0.00 5.24
957 968 3.546815 GCTAGCTCAAACAACCATATGCG 60.547 47.826 7.70 0.00 0.00 4.73
958 969 3.629398 AGCTAGCTCAAACAACCATATGC 59.371 43.478 12.68 0.00 0.00 3.14
959 970 4.025396 CGAGCTAGCTCAAACAACCATATG 60.025 45.833 36.92 16.93 42.86 1.78
960 971 4.122776 CGAGCTAGCTCAAACAACCATAT 58.877 43.478 36.92 4.27 42.86 1.78
961 972 3.056107 ACGAGCTAGCTCAAACAACCATA 60.056 43.478 36.92 0.00 42.86 2.74
962 973 2.289694 ACGAGCTAGCTCAAACAACCAT 60.290 45.455 36.92 12.85 42.86 3.55
963 974 1.070134 ACGAGCTAGCTCAAACAACCA 59.930 47.619 36.92 0.00 42.86 3.67
964 975 1.461127 CACGAGCTAGCTCAAACAACC 59.539 52.381 36.92 14.50 42.86 3.77
965 976 2.135933 ACACGAGCTAGCTCAAACAAC 58.864 47.619 36.92 15.19 42.86 3.32
966 977 2.526304 ACACGAGCTAGCTCAAACAA 57.474 45.000 36.92 0.00 42.86 2.83
967 978 2.135139 CAACACGAGCTAGCTCAAACA 58.865 47.619 36.92 0.00 42.86 2.83
968 979 1.136224 GCAACACGAGCTAGCTCAAAC 60.136 52.381 36.92 19.58 42.86 2.93
969 980 1.148310 GCAACACGAGCTAGCTCAAA 58.852 50.000 36.92 0.00 42.86 2.69
970 981 0.033366 TGCAACACGAGCTAGCTCAA 59.967 50.000 36.92 15.08 42.86 3.02
971 982 0.389037 CTGCAACACGAGCTAGCTCA 60.389 55.000 36.92 19.84 42.86 4.26
972 983 1.691215 GCTGCAACACGAGCTAGCTC 61.691 60.000 31.12 31.12 39.55 4.09
973 984 1.739562 GCTGCAACACGAGCTAGCT 60.740 57.895 19.45 19.45 35.08 3.32
974 985 0.458543 TAGCTGCAACACGAGCTAGC 60.459 55.000 6.62 6.62 43.88 3.42
975 986 3.721625 TAGCTGCAACACGAGCTAG 57.278 52.632 1.02 0.00 43.88 3.42
976 987 0.458543 GCTAGCTGCAACACGAGCTA 60.459 55.000 7.70 0.00 43.88 3.32
978 989 2.781300 GCTAGCTGCAACACGAGC 59.219 61.111 7.70 0.00 42.31 5.03
987 998 1.297664 CTTCCATGAGTGCTAGCTGC 58.702 55.000 17.23 8.97 43.25 5.25
988 999 1.483827 TCCTTCCATGAGTGCTAGCTG 59.516 52.381 17.23 5.04 0.00 4.24
989 1000 1.761784 CTCCTTCCATGAGTGCTAGCT 59.238 52.381 17.23 0.00 0.00 3.32
990 1001 1.809651 GCTCCTTCCATGAGTGCTAGC 60.810 57.143 8.10 8.10 32.31 3.42
991 1002 1.202627 GGCTCCTTCCATGAGTGCTAG 60.203 57.143 0.00 0.00 32.31 3.42
992 1003 0.833287 GGCTCCTTCCATGAGTGCTA 59.167 55.000 0.00 0.00 32.31 3.49
993 1004 1.203441 TGGCTCCTTCCATGAGTGCT 61.203 55.000 0.00 0.00 32.31 4.40
994 1005 0.106819 ATGGCTCCTTCCATGAGTGC 60.107 55.000 0.00 0.00 44.72 4.40
995 1006 1.476471 GGATGGCTCCTTCCATGAGTG 60.476 57.143 14.05 0.00 46.29 3.51
996 1007 0.842635 GGATGGCTCCTTCCATGAGT 59.157 55.000 14.05 0.00 46.29 3.41
997 1008 0.110104 GGGATGGCTCCTTCCATGAG 59.890 60.000 18.89 0.00 46.29 2.90
998 1009 1.355718 GGGGATGGCTCCTTCCATGA 61.356 60.000 18.89 0.00 46.29 3.07
999 1010 1.152368 GGGGATGGCTCCTTCCATG 59.848 63.158 18.89 0.00 46.29 3.66
1001 1012 2.002977 CTGGGGATGGCTCCTTCCA 61.003 63.158 18.89 6.57 41.74 3.53
1002 1013 2.922234 CTGGGGATGGCTCCTTCC 59.078 66.667 11.31 11.31 41.74 3.46
1003 1014 2.194326 GCTGGGGATGGCTCCTTC 59.806 66.667 3.54 0.00 41.74 3.46
1004 1015 3.424105 GGCTGGGGATGGCTCCTT 61.424 66.667 3.54 0.00 41.74 3.36
1011 1022 4.757355 TTTGGCCGGCTGGGGATG 62.757 66.667 28.56 0.00 35.78 3.51
1012 1023 4.759205 GTTTGGCCGGCTGGGGAT 62.759 66.667 28.56 0.00 35.78 3.85
1017 1028 3.726517 CTCGTGTTTGGCCGGCTG 61.727 66.667 28.56 7.74 0.00 4.85
1020 1031 1.296056 CTAACCTCGTGTTTGGCCGG 61.296 60.000 0.00 0.00 38.42 6.13
1021 1032 1.908066 GCTAACCTCGTGTTTGGCCG 61.908 60.000 0.00 0.00 38.42 6.13
1022 1033 1.583495 GGCTAACCTCGTGTTTGGCC 61.583 60.000 6.40 6.40 45.17 5.36
1023 1034 1.873863 GGCTAACCTCGTGTTTGGC 59.126 57.895 10.87 10.87 44.89 4.52
1024 1035 1.296056 CGGGCTAACCTCGTGTTTGG 61.296 60.000 0.00 0.00 38.42 3.28
1025 1036 0.320073 TCGGGCTAACCTCGTGTTTG 60.320 55.000 0.00 0.00 38.42 2.93
1026 1037 0.320160 GTCGGGCTAACCTCGTGTTT 60.320 55.000 0.00 0.00 38.42 2.83
1027 1038 1.183676 AGTCGGGCTAACCTCGTGTT 61.184 55.000 0.00 0.00 41.11 3.32
1028 1039 0.322816 TAGTCGGGCTAACCTCGTGT 60.323 55.000 0.00 0.00 36.97 4.49
1029 1040 0.100146 GTAGTCGGGCTAACCTCGTG 59.900 60.000 0.00 0.00 36.97 4.35
1030 1041 1.034292 GGTAGTCGGGCTAACCTCGT 61.034 60.000 0.00 0.00 36.97 4.18
1031 1042 1.033746 TGGTAGTCGGGCTAACCTCG 61.034 60.000 1.61 0.00 36.56 4.63
1032 1043 0.459078 GTGGTAGTCGGGCTAACCTC 59.541 60.000 1.61 0.00 36.56 3.85
1033 1044 0.251922 TGTGGTAGTCGGGCTAACCT 60.252 55.000 1.61 0.00 36.56 3.50
1034 1045 0.828677 ATGTGGTAGTCGGGCTAACC 59.171 55.000 1.61 2.15 36.56 2.85
1035 1046 1.479323 TGATGTGGTAGTCGGGCTAAC 59.521 52.381 0.00 0.00 37.88 2.34
1036 1047 1.855295 TGATGTGGTAGTCGGGCTAA 58.145 50.000 0.00 0.00 0.00 3.09
1037 1048 1.686587 CATGATGTGGTAGTCGGGCTA 59.313 52.381 0.00 0.00 0.00 3.93
1038 1049 0.465705 CATGATGTGGTAGTCGGGCT 59.534 55.000 0.00 0.00 0.00 5.19
1039 1050 0.178068 ACATGATGTGGTAGTCGGGC 59.822 55.000 0.00 0.00 0.00 6.13
1040 1051 1.757118 AGACATGATGTGGTAGTCGGG 59.243 52.381 1.23 0.00 34.56 5.14
1041 1052 2.814269 CAGACATGATGTGGTAGTCGG 58.186 52.381 1.23 0.00 34.56 4.79
1042 1053 2.196749 GCAGACATGATGTGGTAGTCG 58.803 52.381 1.23 0.00 34.56 4.18
1043 1054 3.251479 TGCAGACATGATGTGGTAGTC 57.749 47.619 1.23 0.00 0.00 2.59
1044 1055 3.920231 ATGCAGACATGATGTGGTAGT 57.080 42.857 1.23 0.00 34.35 2.73
1045 1056 3.242969 GCAATGCAGACATGATGTGGTAG 60.243 47.826 1.23 0.00 36.36 3.18
1049 1060 2.683362 AGAGCAATGCAGACATGATGTG 59.317 45.455 8.35 0.00 36.36 3.21
1055 1066 4.270834 AGAAATCAGAGCAATGCAGACAT 58.729 39.130 8.35 0.00 38.49 3.06
1062 1073 1.004185 CGCCGAGAAATCAGAGCAATG 60.004 52.381 0.00 0.00 0.00 2.82
1089 1104 2.821366 GACGACGGCGACCCTAGA 60.821 66.667 22.49 0.00 41.64 2.43
1160 1175 3.036783 GACGACCGTGACTCCTCCG 62.037 68.421 0.00 0.00 0.00 4.63
1249 1264 1.350193 CTGATGGAAGACGACGTTGG 58.650 55.000 7.90 0.00 0.00 3.77
1306 1321 0.249398 ACGGGTCTTGAGGAAATCGG 59.751 55.000 0.00 0.00 0.00 4.18
1364 1379 1.470979 GCAGCATGGAAATGGAAGCAG 60.471 52.381 0.00 0.00 35.86 4.24
1372 1387 3.117738 AGCCTTACTAGCAGCATGGAAAT 60.118 43.478 0.00 0.00 35.86 2.17
1374 1389 1.839994 AGCCTTACTAGCAGCATGGAA 59.160 47.619 0.00 0.00 35.86 3.53
1375 1390 1.139654 CAGCCTTACTAGCAGCATGGA 59.860 52.381 0.00 0.00 35.86 3.41
1376 1391 1.590932 CAGCCTTACTAGCAGCATGG 58.409 55.000 0.00 0.00 35.86 3.66
1377 1392 0.942962 GCAGCCTTACTAGCAGCATG 59.057 55.000 0.00 0.00 41.85 4.06
1378 1393 0.531532 CGCAGCCTTACTAGCAGCAT 60.532 55.000 0.00 0.00 42.31 3.79
1380 1395 0.249657 ATCGCAGCCTTACTAGCAGC 60.250 55.000 0.00 0.00 39.17 5.25
1381 1396 1.495878 CATCGCAGCCTTACTAGCAG 58.504 55.000 0.00 0.00 0.00 4.24
1386 1401 1.442526 GCATGCATCGCAGCCTTACT 61.443 55.000 14.21 0.00 43.65 2.24
1388 1403 0.820482 ATGCATGCATCGCAGCCTTA 60.820 50.000 27.46 0.00 43.65 2.69
1389 1404 2.071844 GATGCATGCATCGCAGCCTT 62.072 55.000 37.33 14.34 43.65 4.35
1390 1405 2.518587 ATGCATGCATCGCAGCCT 60.519 55.556 27.46 3.56 43.65 4.58
1391 1406 2.050351 GATGCATGCATCGCAGCC 60.050 61.111 37.33 19.73 43.65 4.85
1520 1886 9.282247 CAAATGCAGAACAGATTAATTAGACAC 57.718 33.333 0.00 0.00 0.00 3.67
1522 1888 8.186821 AGCAAATGCAGAACAGATTAATTAGAC 58.813 33.333 8.28 0.00 45.16 2.59
1524 1890 7.375280 CGAGCAAATGCAGAACAGATTAATTAG 59.625 37.037 8.28 0.00 45.16 1.73
1525 1891 7.188834 CGAGCAAATGCAGAACAGATTAATTA 58.811 34.615 8.28 0.00 45.16 1.40
1526 1892 6.032094 CGAGCAAATGCAGAACAGATTAATT 58.968 36.000 8.28 0.00 45.16 1.40
1527 1893 5.449588 CCGAGCAAATGCAGAACAGATTAAT 60.450 40.000 8.28 0.00 45.16 1.40
1528 1894 4.142622 CCGAGCAAATGCAGAACAGATTAA 60.143 41.667 8.28 0.00 45.16 1.40
1533 1903 1.135859 GTCCGAGCAAATGCAGAACAG 60.136 52.381 8.28 0.00 45.16 3.16
1561 1931 5.129485 AGCTAACTGTTCAGCCTACATACAT 59.871 40.000 14.24 0.00 38.61 2.29
1562 1932 4.466370 AGCTAACTGTTCAGCCTACATACA 59.534 41.667 14.24 0.00 38.61 2.29
1563 1933 5.012328 AGCTAACTGTTCAGCCTACATAC 57.988 43.478 14.24 0.00 38.61 2.39
1564 1934 4.956700 AGAGCTAACTGTTCAGCCTACATA 59.043 41.667 14.24 0.00 38.61 2.29
1565 1935 3.772025 AGAGCTAACTGTTCAGCCTACAT 59.228 43.478 14.24 1.68 38.61 2.29
1567 1937 3.516615 CAGAGCTAACTGTTCAGCCTAC 58.483 50.000 14.24 9.12 38.61 3.18
1624 2007 3.493350 CCCGGACAGTCTTTATCATCCAG 60.493 52.174 0.73 0.00 0.00 3.86
1747 2131 1.765314 CACACTATCTTCCCCTGGGAG 59.235 57.143 16.20 4.45 46.06 4.30
1756 2140 2.223618 GGAGGAGACGCACACTATCTTC 60.224 54.545 0.00 0.00 0.00 2.87
1852 2258 6.525629 ACATAGATCGATCGAAATCCCTTTT 58.474 36.000 23.50 1.16 0.00 2.27
1883 2289 1.064296 CTCGTCGCCGATAAGCTGT 59.936 57.895 0.00 0.00 43.27 4.40
1967 2375 2.283894 GGCAGGGGGTCCTTTTGG 60.284 66.667 0.00 0.00 42.67 3.28
1968 2376 2.676471 CGGCAGGGGGTCCTTTTG 60.676 66.667 0.00 0.00 42.67 2.44
1969 2377 2.466186 TTCGGCAGGGGGTCCTTTT 61.466 57.895 0.00 0.00 42.67 2.27
1970 2378 2.856988 TTCGGCAGGGGGTCCTTT 60.857 61.111 0.00 0.00 42.67 3.11
1971 2379 3.647771 GTTCGGCAGGGGGTCCTT 61.648 66.667 0.00 0.00 42.67 3.36
1982 2390 1.416813 CTCATCTCAGTGCGTTCGGC 61.417 60.000 0.00 0.00 43.96 5.54
1983 2391 1.416813 GCTCATCTCAGTGCGTTCGG 61.417 60.000 0.00 0.00 0.00 4.30
1984 2392 0.733909 TGCTCATCTCAGTGCGTTCG 60.734 55.000 0.00 0.00 0.00 3.95
1985 2393 0.997932 CTGCTCATCTCAGTGCGTTC 59.002 55.000 0.00 0.00 0.00 3.95
1986 2394 1.018226 GCTGCTCATCTCAGTGCGTT 61.018 55.000 0.00 0.00 34.21 4.84
1987 2395 1.447489 GCTGCTCATCTCAGTGCGT 60.447 57.895 0.00 0.00 34.21 5.24
1988 2396 1.447314 TGCTGCTCATCTCAGTGCG 60.447 57.895 0.00 0.00 34.21 5.34
1989 2397 0.391395 AGTGCTGCTCATCTCAGTGC 60.391 55.000 0.00 0.00 34.21 4.40
1990 2398 1.205179 AGAGTGCTGCTCATCTCAGTG 59.795 52.381 0.00 0.00 46.47 3.66
1991 2399 1.559368 AGAGTGCTGCTCATCTCAGT 58.441 50.000 0.00 0.00 46.47 3.41
2041 2449 7.794683 AGTTCTTCCCATGGAACTATCCTATTA 59.205 37.037 15.22 0.00 46.72 0.98
2147 2555 9.768662 ATTCAACCTAAGAAGTTCTTTACGTAA 57.231 29.630 22.66 3.29 37.89 3.18
2364 2772 1.269723 TCGACGATGCAGAACTCTTGT 59.730 47.619 0.00 0.00 0.00 3.16
2820 3228 6.408548 CCCCCGCAGTGATATGATTATCTATT 60.409 42.308 0.00 0.00 36.07 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.