Multiple sequence alignment - TraesCS7A01G109800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G109800 chr7A 100.000 6834 0 0 1 6834 66710686 66717519 0.000000e+00 12621.0
1 TraesCS7A01G109800 chr7D 93.369 6485 220 56 391 6834 63730490 63736805 0.000000e+00 9400.0
2 TraesCS7A01G109800 chr7B 92.647 6569 268 96 391 6834 4311880 4318358 0.000000e+00 9256.0
3 TraesCS7A01G109800 chr7B 82.492 634 71 18 5514 6141 4323207 4323806 2.820000e-143 520.0
4 TraesCS7A01G109800 chr7B 96.447 197 6 1 1 197 191709005 191709200 2.380000e-84 324.0
5 TraesCS7A01G109800 chr6A 98.958 192 2 0 1 192 539191421 539191612 1.820000e-90 344.0
6 TraesCS7A01G109800 chr6A 96.891 193 6 0 1 193 101839742 101839934 2.380000e-84 324.0
7 TraesCS7A01G109800 chr4A 97.436 195 5 0 1 195 536197053 536197247 3.950000e-87 333.0
8 TraesCS7A01G109800 chr2A 97.423 194 5 0 1 194 192087515 192087708 1.420000e-86 331.0
9 TraesCS7A01G109800 chr2A 90.278 72 5 2 6179 6250 38508519 38508450 7.300000e-15 93.5
10 TraesCS7A01G109800 chr5A 96.482 199 6 1 1 199 673523992 673523795 1.840000e-85 327.0
11 TraesCS7A01G109800 chr4B 96.875 192 6 0 1 192 601733856 601734047 8.550000e-84 322.0
12 TraesCS7A01G109800 chr3A 96.875 192 6 0 1 192 490008388 490008197 8.550000e-84 322.0
13 TraesCS7A01G109800 chr6B 95.960 198 7 1 1 198 633363170 633363366 3.080000e-83 320.0
14 TraesCS7A01G109800 chr1A 87.072 263 28 4 3671 3932 557972563 557972306 6.700000e-75 292.0
15 TraesCS7A01G109800 chr3B 90.062 161 15 1 6145 6304 749864703 749864863 2.500000e-49 207.0
16 TraesCS7A01G109800 chr1B 90.196 102 9 1 6153 6254 670294501 670294601 1.550000e-26 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G109800 chr7A 66710686 66717519 6833 False 12621 12621 100.000 1 6834 1 chr7A.!!$F1 6833
1 TraesCS7A01G109800 chr7D 63730490 63736805 6315 False 9400 9400 93.369 391 6834 1 chr7D.!!$F1 6443
2 TraesCS7A01G109800 chr7B 4311880 4318358 6478 False 9256 9256 92.647 391 6834 1 chr7B.!!$F1 6443
3 TraesCS7A01G109800 chr7B 4323207 4323806 599 False 520 520 82.492 5514 6141 1 chr7B.!!$F2 627

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
337 338 0.033781 TTCGACCTGTAAACCCACGG 59.966 55.000 0.00 0.0 0.00 4.94 F
398 399 0.036164 TGCTGTTACCATTGGACGCT 59.964 50.000 10.37 0.0 0.00 5.07 F
2196 2317 0.099968 CCAATGCTGCAACCGATCTG 59.900 55.000 6.36 0.0 0.00 2.90 F
2226 2347 0.800631 GGGTTAAGCCAGTACAACGC 59.199 55.000 18.84 0.0 39.65 4.84 F
3566 3700 0.883833 CGCACTTCCATGCCTCTTTT 59.116 50.000 0.00 0.0 42.99 2.27 F
4013 4186 1.035923 TTCATCTAGAGGCCAGAGCG 58.964 55.000 5.01 0.0 41.24 5.03 F
5031 5209 3.368323 CCTTGTTGTTTCAGGTTGCAGTT 60.368 43.478 0.00 0.0 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1326 1393 0.034960 GGAACAGAGAAGAAGGGGGC 60.035 60.000 0.00 0.00 0.00 5.80 R
2203 2324 0.322322 TGTACTGGCTTAACCCACCG 59.678 55.000 0.00 0.00 37.83 4.94 R
3728 3891 0.469144 TTCAACACCTTCAAGGCCCC 60.469 55.000 2.20 0.00 39.63 5.80 R
3948 4121 3.726557 AAACAGGATGGATCAAGCAGA 57.273 42.857 0.00 0.00 43.62 4.26 R
5408 5587 4.546674 TGTAGAAGATGATGGTCTAGGCA 58.453 43.478 0.00 0.00 0.00 4.75 R
5409 5588 4.586841 ACTGTAGAAGATGATGGTCTAGGC 59.413 45.833 0.00 0.00 0.00 3.93 R
6281 6469 1.279271 ACCTGTTCGGATCCTCTTTGG 59.721 52.381 10.75 9.07 36.31 3.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.768406 CTCGCTATTCTGGCTAGCTATG 58.232 50.000 15.72 5.30 39.55 2.23
22 23 2.094494 TCGCTATTCTGGCTAGCTATGC 60.094 50.000 15.72 8.65 39.55 3.14
32 33 1.461127 GCTAGCTATGCCATGTAACGC 59.539 52.381 7.70 0.00 0.00 4.84
33 34 2.754472 CTAGCTATGCCATGTAACGCA 58.246 47.619 0.00 0.00 39.79 5.24
34 35 1.299541 AGCTATGCCATGTAACGCAC 58.700 50.000 0.00 0.00 37.93 5.34
35 36 1.134401 AGCTATGCCATGTAACGCACT 60.134 47.619 0.00 0.00 37.93 4.40
36 37 1.670811 GCTATGCCATGTAACGCACTT 59.329 47.619 0.00 0.00 37.93 3.16
37 38 2.869801 GCTATGCCATGTAACGCACTTA 59.130 45.455 0.00 0.00 37.93 2.24
38 39 3.498397 GCTATGCCATGTAACGCACTTAT 59.502 43.478 0.00 0.00 37.93 1.73
39 40 4.377431 GCTATGCCATGTAACGCACTTATC 60.377 45.833 0.00 0.00 37.93 1.75
40 41 2.979240 TGCCATGTAACGCACTTATCA 58.021 42.857 0.00 0.00 0.00 2.15
41 42 2.675844 TGCCATGTAACGCACTTATCAC 59.324 45.455 0.00 0.00 0.00 3.06
42 43 2.031683 GCCATGTAACGCACTTATCACC 59.968 50.000 0.00 0.00 0.00 4.02
43 44 2.284150 CCATGTAACGCACTTATCACCG 59.716 50.000 0.00 0.00 0.00 4.94
44 45 1.999048 TGTAACGCACTTATCACCGG 58.001 50.000 0.00 0.00 0.00 5.28
45 46 1.273048 TGTAACGCACTTATCACCGGT 59.727 47.619 0.00 0.00 0.00 5.28
46 47 1.922545 GTAACGCACTTATCACCGGTC 59.077 52.381 2.59 0.00 0.00 4.79
47 48 0.606604 AACGCACTTATCACCGGTCT 59.393 50.000 2.59 0.00 0.00 3.85
48 49 0.172803 ACGCACTTATCACCGGTCTC 59.827 55.000 2.59 0.00 0.00 3.36
49 50 0.866061 CGCACTTATCACCGGTCTCG 60.866 60.000 2.59 0.00 0.00 4.04
50 51 1.146358 GCACTTATCACCGGTCTCGC 61.146 60.000 2.59 0.00 34.56 5.03
51 52 0.527817 CACTTATCACCGGTCTCGCC 60.528 60.000 2.59 0.00 34.56 5.54
52 53 0.683504 ACTTATCACCGGTCTCGCCT 60.684 55.000 2.59 0.00 34.25 5.52
53 54 0.460311 CTTATCACCGGTCTCGCCTT 59.540 55.000 2.59 0.00 34.25 4.35
54 55 0.899720 TTATCACCGGTCTCGCCTTT 59.100 50.000 2.59 0.00 34.25 3.11
55 56 0.899720 TATCACCGGTCTCGCCTTTT 59.100 50.000 2.59 0.00 34.25 2.27
56 57 0.673644 ATCACCGGTCTCGCCTTTTG 60.674 55.000 2.59 0.00 34.25 2.44
57 58 2.032071 ACCGGTCTCGCCTTTTGG 59.968 61.111 0.00 0.00 44.18 3.28
68 69 2.932663 CCTTTTGGCTCTGCTTCGA 58.067 52.632 0.00 0.00 0.00 3.71
69 70 1.238439 CCTTTTGGCTCTGCTTCGAA 58.762 50.000 0.00 0.00 0.00 3.71
70 71 1.608590 CCTTTTGGCTCTGCTTCGAAA 59.391 47.619 0.00 0.00 0.00 3.46
71 72 2.605580 CCTTTTGGCTCTGCTTCGAAAC 60.606 50.000 0.00 0.00 0.00 2.78
72 73 1.967319 TTTGGCTCTGCTTCGAAACT 58.033 45.000 0.00 0.00 0.00 2.66
73 74 1.967319 TTGGCTCTGCTTCGAAACTT 58.033 45.000 0.00 0.00 0.00 2.66
74 75 1.229428 TGGCTCTGCTTCGAAACTTG 58.771 50.000 0.00 0.00 0.00 3.16
75 76 0.519077 GGCTCTGCTTCGAAACTTGG 59.481 55.000 0.00 0.00 0.00 3.61
76 77 0.110010 GCTCTGCTTCGAAACTTGGC 60.110 55.000 0.00 0.00 0.00 4.52
77 78 1.517242 CTCTGCTTCGAAACTTGGCT 58.483 50.000 0.00 0.00 0.00 4.75
78 79 1.196354 CTCTGCTTCGAAACTTGGCTG 59.804 52.381 0.00 3.17 0.00 4.85
79 80 0.386478 CTGCTTCGAAACTTGGCTGC 60.386 55.000 0.00 0.00 0.00 5.25
80 81 1.081175 GCTTCGAAACTTGGCTGCC 60.081 57.895 12.87 12.87 0.00 4.85
81 82 1.518903 GCTTCGAAACTTGGCTGCCT 61.519 55.000 21.03 0.00 0.00 4.75
82 83 1.808411 CTTCGAAACTTGGCTGCCTA 58.192 50.000 21.03 11.84 0.00 3.93
83 84 1.734465 CTTCGAAACTTGGCTGCCTAG 59.266 52.381 25.22 25.22 32.84 3.02
92 93 3.801129 GCTGCCTAGCTTCGGTTC 58.199 61.111 0.00 0.00 46.57 3.62
93 94 1.815840 GCTGCCTAGCTTCGGTTCC 60.816 63.158 0.00 0.00 46.57 3.62
94 95 1.519455 CTGCCTAGCTTCGGTTCCG 60.519 63.158 4.74 4.74 0.00 4.30
95 96 2.227089 CTGCCTAGCTTCGGTTCCGT 62.227 60.000 11.04 0.00 0.00 4.69
96 97 1.079336 GCCTAGCTTCGGTTCCGTT 60.079 57.895 11.04 0.00 0.00 4.44
97 98 0.672711 GCCTAGCTTCGGTTCCGTTT 60.673 55.000 11.04 0.00 0.00 3.60
98 99 1.404583 GCCTAGCTTCGGTTCCGTTTA 60.405 52.381 11.04 0.00 0.00 2.01
99 100 2.537401 CCTAGCTTCGGTTCCGTTTAG 58.463 52.381 11.04 8.33 0.00 1.85
100 101 2.094338 CCTAGCTTCGGTTCCGTTTAGT 60.094 50.000 11.04 0.00 0.00 2.24
101 102 2.538512 AGCTTCGGTTCCGTTTAGTT 57.461 45.000 11.04 3.43 0.00 2.24
102 103 2.842457 AGCTTCGGTTCCGTTTAGTTT 58.158 42.857 11.04 0.00 0.00 2.66
103 104 2.546789 AGCTTCGGTTCCGTTTAGTTTG 59.453 45.455 11.04 0.00 0.00 2.93
104 105 2.350102 GCTTCGGTTCCGTTTAGTTTGG 60.350 50.000 11.04 0.00 0.00 3.28
105 106 2.618442 TCGGTTCCGTTTAGTTTGGT 57.382 45.000 11.04 0.00 0.00 3.67
106 107 2.482864 TCGGTTCCGTTTAGTTTGGTC 58.517 47.619 11.04 0.00 0.00 4.02
107 108 2.102925 TCGGTTCCGTTTAGTTTGGTCT 59.897 45.455 11.04 0.00 0.00 3.85
108 109 2.874086 CGGTTCCGTTTAGTTTGGTCTT 59.126 45.455 2.82 0.00 0.00 3.01
109 110 3.303526 CGGTTCCGTTTAGTTTGGTCTTG 60.304 47.826 2.82 0.00 0.00 3.02
110 111 3.878699 GGTTCCGTTTAGTTTGGTCTTGA 59.121 43.478 0.00 0.00 0.00 3.02
111 112 4.024302 GGTTCCGTTTAGTTTGGTCTTGAG 60.024 45.833 0.00 0.00 0.00 3.02
112 113 4.675976 TCCGTTTAGTTTGGTCTTGAGA 57.324 40.909 0.00 0.00 0.00 3.27
113 114 4.374399 TCCGTTTAGTTTGGTCTTGAGAC 58.626 43.478 2.51 2.51 44.04 3.36
114 115 4.100498 TCCGTTTAGTTTGGTCTTGAGACT 59.900 41.667 10.68 0.00 44.20 3.24
115 116 4.448060 CCGTTTAGTTTGGTCTTGAGACTC 59.552 45.833 10.68 0.00 44.20 3.36
116 117 5.290386 CGTTTAGTTTGGTCTTGAGACTCT 58.710 41.667 10.68 7.27 44.20 3.24
117 118 5.175856 CGTTTAGTTTGGTCTTGAGACTCTG 59.824 44.000 10.68 0.00 44.20 3.35
118 119 5.871396 TTAGTTTGGTCTTGAGACTCTGT 57.129 39.130 10.68 0.00 44.20 3.41
119 120 4.762289 AGTTTGGTCTTGAGACTCTGTT 57.238 40.909 10.68 0.00 44.20 3.16
120 121 5.104259 AGTTTGGTCTTGAGACTCTGTTT 57.896 39.130 10.68 0.00 44.20 2.83
121 122 4.878397 AGTTTGGTCTTGAGACTCTGTTTG 59.122 41.667 10.68 0.00 44.20 2.93
122 123 2.838736 TGGTCTTGAGACTCTGTTTGC 58.161 47.619 10.68 0.00 44.20 3.68
123 124 2.170397 TGGTCTTGAGACTCTGTTTGCA 59.830 45.455 10.68 0.00 44.20 4.08
124 125 2.545946 GGTCTTGAGACTCTGTTTGCAC 59.454 50.000 10.68 0.00 44.20 4.57
125 126 2.219674 GTCTTGAGACTCTGTTTGCACG 59.780 50.000 3.68 0.00 41.65 5.34
126 127 0.937304 TTGAGACTCTGTTTGCACGC 59.063 50.000 3.68 0.00 0.00 5.34
127 128 0.104855 TGAGACTCTGTTTGCACGCT 59.895 50.000 3.68 0.00 0.00 5.07
128 129 0.510359 GAGACTCTGTTTGCACGCTG 59.490 55.000 0.00 0.00 0.00 5.18
129 130 1.082496 GACTCTGTTTGCACGCTGC 60.082 57.895 0.00 3.44 45.29 5.25
130 131 2.253452 CTCTGTTTGCACGCTGCC 59.747 61.111 7.38 0.00 44.23 4.85
131 132 2.203195 TCTGTTTGCACGCTGCCT 60.203 55.556 7.38 0.00 44.23 4.75
132 133 0.950555 CTCTGTTTGCACGCTGCCTA 60.951 55.000 7.38 0.00 44.23 3.93
133 134 0.321564 TCTGTTTGCACGCTGCCTAT 60.322 50.000 7.38 0.00 44.23 2.57
134 135 0.523072 CTGTTTGCACGCTGCCTATT 59.477 50.000 7.38 0.00 44.23 1.73
135 136 0.240678 TGTTTGCACGCTGCCTATTG 59.759 50.000 7.38 0.00 44.23 1.90
136 137 0.240945 GTTTGCACGCTGCCTATTGT 59.759 50.000 7.38 0.00 44.23 2.71
137 138 0.958091 TTTGCACGCTGCCTATTGTT 59.042 45.000 7.38 0.00 44.23 2.83
138 139 0.240678 TTGCACGCTGCCTATTGTTG 59.759 50.000 7.38 0.00 44.23 3.33
139 140 0.888736 TGCACGCTGCCTATTGTTGT 60.889 50.000 7.38 0.00 44.23 3.32
140 141 0.454957 GCACGCTGCCTATTGTTGTG 60.455 55.000 0.00 0.00 37.42 3.33
141 142 0.168788 CACGCTGCCTATTGTTGTGG 59.831 55.000 0.00 0.00 0.00 4.17
142 143 0.960364 ACGCTGCCTATTGTTGTGGG 60.960 55.000 0.00 0.00 0.00 4.61
143 144 1.512694 GCTGCCTATTGTTGTGGGC 59.487 57.895 0.00 0.00 44.31 5.36
144 145 0.967380 GCTGCCTATTGTTGTGGGCT 60.967 55.000 0.00 0.00 44.36 5.19
145 146 1.549203 CTGCCTATTGTTGTGGGCTT 58.451 50.000 0.00 0.00 44.36 4.35
146 147 1.895131 CTGCCTATTGTTGTGGGCTTT 59.105 47.619 0.00 0.00 44.36 3.51
147 148 3.088532 CTGCCTATTGTTGTGGGCTTTA 58.911 45.455 0.00 0.00 44.36 1.85
148 149 3.701040 CTGCCTATTGTTGTGGGCTTTAT 59.299 43.478 0.00 0.00 44.36 1.40
149 150 4.093011 TGCCTATTGTTGTGGGCTTTATT 58.907 39.130 0.00 0.00 44.36 1.40
150 151 5.265191 TGCCTATTGTTGTGGGCTTTATTA 58.735 37.500 0.00 0.00 44.36 0.98
151 152 5.717178 TGCCTATTGTTGTGGGCTTTATTAA 59.283 36.000 0.00 0.00 44.36 1.40
152 153 6.382570 TGCCTATTGTTGTGGGCTTTATTAAT 59.617 34.615 0.00 0.00 44.36 1.40
153 154 7.093112 TGCCTATTGTTGTGGGCTTTATTAATT 60.093 33.333 0.00 0.00 44.36 1.40
154 155 7.768582 GCCTATTGTTGTGGGCTTTATTAATTT 59.231 33.333 0.00 0.00 41.20 1.82
168 169 8.677871 CTTTATTAATTTAAAGCCGGACGTTT 57.322 30.769 5.05 3.61 33.69 3.60
169 170 8.672214 TTTATTAATTTAAAGCCGGACGTTTC 57.328 30.769 5.05 0.00 0.00 2.78
170 171 5.945466 TTAATTTAAAGCCGGACGTTTCT 57.055 34.783 5.05 0.00 0.00 2.52
171 172 3.824414 ATTTAAAGCCGGACGTTTCTG 57.176 42.857 5.05 0.00 0.00 3.02
172 173 2.529780 TTAAAGCCGGACGTTTCTGA 57.470 45.000 5.05 0.00 0.00 3.27
173 174 1.787012 TAAAGCCGGACGTTTCTGAC 58.213 50.000 5.05 0.00 0.00 3.51
187 188 6.922980 CGTTTCTGACGTCTATGTTCTAAA 57.077 37.500 17.92 3.17 46.49 1.85
188 189 7.329438 CGTTTCTGACGTCTATGTTCTAAAA 57.671 36.000 17.92 1.76 46.49 1.52
189 190 7.780313 CGTTTCTGACGTCTATGTTCTAAAAA 58.220 34.615 17.92 0.70 46.49 1.94
210 211 2.812358 AAGATCCGGCAAAACAAACC 57.188 45.000 0.00 0.00 0.00 3.27
211 212 1.698506 AGATCCGGCAAAACAAACCA 58.301 45.000 0.00 0.00 0.00 3.67
212 213 2.035632 AGATCCGGCAAAACAAACCAA 58.964 42.857 0.00 0.00 0.00 3.67
213 214 2.632512 AGATCCGGCAAAACAAACCAAT 59.367 40.909 0.00 0.00 0.00 3.16
214 215 2.990066 TCCGGCAAAACAAACCAATT 57.010 40.000 0.00 0.00 0.00 2.32
215 216 2.827652 TCCGGCAAAACAAACCAATTC 58.172 42.857 0.00 0.00 0.00 2.17
216 217 1.870402 CCGGCAAAACAAACCAATTCC 59.130 47.619 0.00 0.00 0.00 3.01
217 218 1.870402 CGGCAAAACAAACCAATTCCC 59.130 47.619 0.00 0.00 0.00 3.97
218 219 1.870402 GGCAAAACAAACCAATTCCCG 59.130 47.619 0.00 0.00 0.00 5.14
219 220 2.556257 GCAAAACAAACCAATTCCCGT 58.444 42.857 0.00 0.00 0.00 5.28
220 221 3.492829 GGCAAAACAAACCAATTCCCGTA 60.493 43.478 0.00 0.00 0.00 4.02
221 222 3.738791 GCAAAACAAACCAATTCCCGTAG 59.261 43.478 0.00 0.00 0.00 3.51
237 238 2.846193 CGTAGGTATGGTGGAAATGGG 58.154 52.381 0.00 0.00 0.00 4.00
238 239 2.171870 CGTAGGTATGGTGGAAATGGGT 59.828 50.000 0.00 0.00 0.00 4.51
239 240 3.743269 CGTAGGTATGGTGGAAATGGGTC 60.743 52.174 0.00 0.00 0.00 4.46
240 241 2.283834 AGGTATGGTGGAAATGGGTCA 58.716 47.619 0.00 0.00 0.00 4.02
241 242 2.025321 AGGTATGGTGGAAATGGGTCAC 60.025 50.000 0.00 0.00 0.00 3.67
242 243 2.014128 GTATGGTGGAAATGGGTCACG 58.986 52.381 0.00 0.00 32.65 4.35
243 244 0.323360 ATGGTGGAAATGGGTCACGG 60.323 55.000 0.00 0.00 32.65 4.94
244 245 1.074248 GGTGGAAATGGGTCACGGT 59.926 57.895 0.00 0.00 32.65 4.83
245 246 0.538746 GGTGGAAATGGGTCACGGTT 60.539 55.000 0.00 0.00 32.65 4.44
246 247 1.324383 GTGGAAATGGGTCACGGTTT 58.676 50.000 0.00 0.00 0.00 3.27
247 248 1.000717 GTGGAAATGGGTCACGGTTTG 60.001 52.381 0.00 0.00 0.00 2.93
248 249 0.038618 GGAAATGGGTCACGGTTTGC 60.039 55.000 0.00 0.00 0.00 3.68
249 250 0.671251 GAAATGGGTCACGGTTTGCA 59.329 50.000 0.00 0.00 0.00 4.08
250 251 1.067821 GAAATGGGTCACGGTTTGCAA 59.932 47.619 0.00 0.00 0.00 4.08
251 252 0.673437 AATGGGTCACGGTTTGCAAG 59.327 50.000 0.00 0.00 0.00 4.01
252 253 0.179004 ATGGGTCACGGTTTGCAAGA 60.179 50.000 0.00 0.00 0.00 3.02
253 254 0.179004 TGGGTCACGGTTTGCAAGAT 60.179 50.000 0.00 0.00 0.00 2.40
254 255 0.521735 GGGTCACGGTTTGCAAGATC 59.478 55.000 0.00 0.00 0.00 2.75
255 256 0.521735 GGTCACGGTTTGCAAGATCC 59.478 55.000 0.00 3.37 0.00 3.36
256 257 0.521735 GTCACGGTTTGCAAGATCCC 59.478 55.000 0.00 0.00 0.00 3.85
257 258 0.109532 TCACGGTTTGCAAGATCCCA 59.890 50.000 0.00 0.00 0.00 4.37
258 259 0.240945 CACGGTTTGCAAGATCCCAC 59.759 55.000 0.00 0.00 0.00 4.61
259 260 0.179004 ACGGTTTGCAAGATCCCACA 60.179 50.000 0.00 0.00 0.00 4.17
260 261 0.958091 CGGTTTGCAAGATCCCACAA 59.042 50.000 0.00 0.00 0.00 3.33
261 262 1.339610 CGGTTTGCAAGATCCCACAAA 59.660 47.619 0.00 0.00 0.00 2.83
262 263 2.223923 CGGTTTGCAAGATCCCACAAAA 60.224 45.455 0.00 0.00 34.10 2.44
263 264 3.739519 CGGTTTGCAAGATCCCACAAAAA 60.740 43.478 0.00 0.00 34.10 1.94
264 265 3.809279 GGTTTGCAAGATCCCACAAAAAG 59.191 43.478 0.00 0.00 34.10 2.27
265 266 4.442753 GGTTTGCAAGATCCCACAAAAAGA 60.443 41.667 0.00 0.00 34.10 2.52
266 267 5.115480 GTTTGCAAGATCCCACAAAAAGAA 58.885 37.500 0.00 0.00 34.10 2.52
267 268 5.350504 TTGCAAGATCCCACAAAAAGAAA 57.649 34.783 0.00 0.00 0.00 2.52
268 269 5.350504 TGCAAGATCCCACAAAAAGAAAA 57.649 34.783 0.00 0.00 0.00 2.29
269 270 5.927819 TGCAAGATCCCACAAAAAGAAAAT 58.072 33.333 0.00 0.00 0.00 1.82
270 271 6.355747 TGCAAGATCCCACAAAAAGAAAATT 58.644 32.000 0.00 0.00 0.00 1.82
271 272 6.482973 TGCAAGATCCCACAAAAAGAAAATTC 59.517 34.615 0.00 0.00 0.00 2.17
272 273 6.707608 GCAAGATCCCACAAAAAGAAAATTCT 59.292 34.615 0.00 0.00 39.74 2.40
273 274 7.307573 GCAAGATCCCACAAAAAGAAAATTCTG 60.308 37.037 0.00 0.00 37.65 3.02
274 275 7.601705 AGATCCCACAAAAAGAAAATTCTGA 57.398 32.000 0.00 0.00 37.65 3.27
275 276 7.664758 AGATCCCACAAAAAGAAAATTCTGAG 58.335 34.615 0.00 0.00 37.65 3.35
276 277 7.506938 AGATCCCACAAAAAGAAAATTCTGAGA 59.493 33.333 0.00 0.00 37.65 3.27
277 278 6.805713 TCCCACAAAAAGAAAATTCTGAGAC 58.194 36.000 0.00 0.00 37.65 3.36
278 279 5.687285 CCCACAAAAAGAAAATTCTGAGACG 59.313 40.000 0.00 0.00 37.65 4.18
279 280 5.687285 CCACAAAAAGAAAATTCTGAGACGG 59.313 40.000 0.00 0.00 37.65 4.79
280 281 6.265577 CACAAAAAGAAAATTCTGAGACGGT 58.734 36.000 0.00 0.00 37.65 4.83
281 282 6.414987 CACAAAAAGAAAATTCTGAGACGGTC 59.585 38.462 0.00 0.00 37.65 4.79
282 283 4.992381 AAAGAAAATTCTGAGACGGTCG 57.008 40.909 1.89 0.00 37.65 4.79
283 284 3.936372 AGAAAATTCTGAGACGGTCGA 57.064 42.857 1.89 0.00 35.89 4.20
284 285 4.252971 AGAAAATTCTGAGACGGTCGAA 57.747 40.909 1.89 1.10 35.89 3.71
285 286 4.822026 AGAAAATTCTGAGACGGTCGAAT 58.178 39.130 1.89 3.47 35.89 3.34
286 287 4.627467 AGAAAATTCTGAGACGGTCGAATG 59.373 41.667 9.51 0.51 35.89 2.67
287 288 3.594603 AATTCTGAGACGGTCGAATGT 57.405 42.857 9.51 0.00 32.36 2.71
288 289 4.713824 AATTCTGAGACGGTCGAATGTA 57.286 40.909 9.51 0.00 32.36 2.29
289 290 3.482722 TTCTGAGACGGTCGAATGTAC 57.517 47.619 1.89 0.00 0.00 2.90
290 291 1.395954 TCTGAGACGGTCGAATGTACG 59.604 52.381 1.89 0.00 0.00 3.67
291 292 0.448990 TGAGACGGTCGAATGTACGG 59.551 55.000 1.89 0.00 0.00 4.02
292 293 0.248377 GAGACGGTCGAATGTACGGG 60.248 60.000 1.89 0.00 0.00 5.28
293 294 0.677731 AGACGGTCGAATGTACGGGA 60.678 55.000 1.89 0.00 0.00 5.14
294 295 0.383231 GACGGTCGAATGTACGGGAT 59.617 55.000 0.00 0.00 0.00 3.85
295 296 0.383231 ACGGTCGAATGTACGGGATC 59.617 55.000 0.00 0.00 0.00 3.36
296 297 0.666913 CGGTCGAATGTACGGGATCT 59.333 55.000 0.00 0.00 0.00 2.75
297 298 1.875514 CGGTCGAATGTACGGGATCTA 59.124 52.381 0.00 0.00 0.00 1.98
298 299 2.486982 CGGTCGAATGTACGGGATCTAT 59.513 50.000 0.00 0.00 0.00 1.98
299 300 3.057736 CGGTCGAATGTACGGGATCTATT 60.058 47.826 0.00 0.00 0.00 1.73
300 301 4.558095 CGGTCGAATGTACGGGATCTATTT 60.558 45.833 0.00 0.00 0.00 1.40
301 302 4.684703 GGTCGAATGTACGGGATCTATTTG 59.315 45.833 0.00 0.00 0.00 2.32
302 303 4.684703 GTCGAATGTACGGGATCTATTTGG 59.315 45.833 0.00 0.00 0.00 3.28
303 304 3.994392 CGAATGTACGGGATCTATTTGGG 59.006 47.826 0.00 0.00 0.00 4.12
304 305 2.922740 TGTACGGGATCTATTTGGGC 57.077 50.000 0.00 0.00 0.00 5.36
305 306 1.418637 TGTACGGGATCTATTTGGGCC 59.581 52.381 0.00 0.00 0.00 5.80
306 307 0.682852 TACGGGATCTATTTGGGCCG 59.317 55.000 0.00 0.00 0.00 6.13
307 308 1.302511 CGGGATCTATTTGGGCCGG 60.303 63.158 0.00 0.00 0.00 6.13
308 309 1.603739 GGGATCTATTTGGGCCGGC 60.604 63.158 21.18 21.18 0.00 6.13
309 310 1.150536 GGATCTATTTGGGCCGGCA 59.849 57.895 30.85 7.96 0.00 5.69
310 311 0.467290 GGATCTATTTGGGCCGGCAA 60.467 55.000 30.85 15.20 0.00 4.52
311 312 1.398692 GATCTATTTGGGCCGGCAAA 58.601 50.000 30.85 21.47 0.00 3.68
312 313 1.963515 GATCTATTTGGGCCGGCAAAT 59.036 47.619 30.85 26.40 35.48 2.32
313 314 1.859302 TCTATTTGGGCCGGCAAATT 58.141 45.000 30.85 19.22 33.61 1.82
314 315 1.754226 TCTATTTGGGCCGGCAAATTC 59.246 47.619 30.85 10.33 33.61 2.17
315 316 0.457851 TATTTGGGCCGGCAAATTCG 59.542 50.000 30.85 0.00 33.61 3.34
316 317 2.850806 ATTTGGGCCGGCAAATTCGC 62.851 55.000 30.85 8.62 0.00 4.70
324 325 4.765611 GCAAATTCGCCTTCGACC 57.234 55.556 0.00 0.00 45.43 4.79
325 326 2.171635 GCAAATTCGCCTTCGACCT 58.828 52.632 0.00 0.00 45.43 3.85
326 327 0.179189 GCAAATTCGCCTTCGACCTG 60.179 55.000 0.00 0.00 45.43 4.00
327 328 1.156736 CAAATTCGCCTTCGACCTGT 58.843 50.000 0.00 0.00 45.43 4.00
328 329 2.343101 CAAATTCGCCTTCGACCTGTA 58.657 47.619 0.00 0.00 45.43 2.74
329 330 2.739913 CAAATTCGCCTTCGACCTGTAA 59.260 45.455 0.00 0.00 45.43 2.41
330 331 2.754946 ATTCGCCTTCGACCTGTAAA 57.245 45.000 0.00 0.00 45.43 2.01
331 332 1.787012 TTCGCCTTCGACCTGTAAAC 58.213 50.000 0.00 0.00 45.43 2.01
332 333 0.037975 TCGCCTTCGACCTGTAAACC 60.038 55.000 0.00 0.00 40.21 3.27
333 334 1.017701 CGCCTTCGACCTGTAAACCC 61.018 60.000 0.00 0.00 38.10 4.11
334 335 0.035739 GCCTTCGACCTGTAAACCCA 59.964 55.000 0.00 0.00 0.00 4.51
335 336 1.804601 CCTTCGACCTGTAAACCCAC 58.195 55.000 0.00 0.00 0.00 4.61
336 337 1.425412 CTTCGACCTGTAAACCCACG 58.575 55.000 0.00 0.00 0.00 4.94
337 338 0.033781 TTCGACCTGTAAACCCACGG 59.966 55.000 0.00 0.00 0.00 4.94
338 339 1.114722 TCGACCTGTAAACCCACGGT 61.115 55.000 0.00 0.00 37.65 4.83
340 341 1.000731 CGACCTGTAAACCCACGGTTA 59.999 52.381 0.00 0.00 46.20 2.85
341 342 2.354003 CGACCTGTAAACCCACGGTTAT 60.354 50.000 0.00 0.00 46.20 1.89
342 343 3.678289 GACCTGTAAACCCACGGTTATT 58.322 45.455 0.00 0.00 46.20 1.40
343 344 4.074259 GACCTGTAAACCCACGGTTATTT 58.926 43.478 0.00 0.00 46.20 1.40
344 345 4.472496 ACCTGTAAACCCACGGTTATTTT 58.528 39.130 0.00 0.00 46.20 1.82
345 346 5.629125 ACCTGTAAACCCACGGTTATTTTA 58.371 37.500 0.00 0.00 46.20 1.52
346 347 5.473162 ACCTGTAAACCCACGGTTATTTTAC 59.527 40.000 0.00 7.72 46.20 2.01
347 348 5.106197 CCTGTAAACCCACGGTTATTTTACC 60.106 44.000 0.00 0.00 46.20 2.85
356 357 3.343380 GGTTATTTTACCGAATGGCCG 57.657 47.619 0.00 0.00 39.70 6.13
363 364 3.504927 CCGAATGGCCGGGTTTAC 58.495 61.111 2.18 0.00 45.43 2.01
364 365 1.377463 CCGAATGGCCGGGTTTACA 60.377 57.895 2.18 0.00 45.43 2.41
365 366 0.961358 CCGAATGGCCGGGTTTACAA 60.961 55.000 2.18 0.00 45.43 2.41
366 367 0.450184 CGAATGGCCGGGTTTACAAG 59.550 55.000 2.18 0.00 0.00 3.16
367 368 1.828979 GAATGGCCGGGTTTACAAGA 58.171 50.000 2.18 0.00 0.00 3.02
368 369 2.375146 GAATGGCCGGGTTTACAAGAT 58.625 47.619 2.18 0.00 0.00 2.40
369 370 2.525105 ATGGCCGGGTTTACAAGATT 57.475 45.000 2.18 0.00 0.00 2.40
370 371 2.296073 TGGCCGGGTTTACAAGATTT 57.704 45.000 2.18 0.00 0.00 2.17
371 372 1.889829 TGGCCGGGTTTACAAGATTTG 59.110 47.619 2.18 0.00 0.00 2.32
372 373 1.403647 GGCCGGGTTTACAAGATTTGC 60.404 52.381 2.18 0.00 0.00 3.68
373 374 1.403647 GCCGGGTTTACAAGATTTGCC 60.404 52.381 2.18 0.00 0.00 4.52
374 375 1.889829 CCGGGTTTACAAGATTTGCCA 59.110 47.619 0.00 0.00 0.00 4.92
375 376 2.094752 CCGGGTTTACAAGATTTGCCAG 60.095 50.000 0.00 0.00 0.00 4.85
376 377 2.817258 CGGGTTTACAAGATTTGCCAGA 59.183 45.455 0.00 0.00 0.00 3.86
377 378 3.119849 CGGGTTTACAAGATTTGCCAGAG 60.120 47.826 0.00 0.00 0.00 3.35
378 379 4.079253 GGGTTTACAAGATTTGCCAGAGA 58.921 43.478 0.00 0.00 0.00 3.10
379 380 4.706962 GGGTTTACAAGATTTGCCAGAGAT 59.293 41.667 0.00 0.00 0.00 2.75
380 381 5.393461 GGGTTTACAAGATTTGCCAGAGATG 60.393 44.000 0.00 0.00 0.00 2.90
381 382 4.970662 TTACAAGATTTGCCAGAGATGC 57.029 40.909 0.00 0.00 0.00 3.91
382 383 3.083122 ACAAGATTTGCCAGAGATGCT 57.917 42.857 0.00 0.00 0.00 3.79
383 384 2.753452 ACAAGATTTGCCAGAGATGCTG 59.247 45.455 0.00 0.00 44.49 4.41
384 385 2.753452 CAAGATTTGCCAGAGATGCTGT 59.247 45.455 0.00 0.00 43.33 4.40
385 386 3.083122 AGATTTGCCAGAGATGCTGTT 57.917 42.857 0.00 0.00 43.33 3.16
386 387 4.226427 AGATTTGCCAGAGATGCTGTTA 57.774 40.909 0.00 0.00 43.33 2.41
387 388 3.944015 AGATTTGCCAGAGATGCTGTTAC 59.056 43.478 0.00 0.00 43.33 2.50
388 389 2.113860 TTGCCAGAGATGCTGTTACC 57.886 50.000 0.00 0.00 43.33 2.85
389 390 0.983467 TGCCAGAGATGCTGTTACCA 59.017 50.000 0.00 0.00 43.33 3.25
392 393 2.357009 GCCAGAGATGCTGTTACCATTG 59.643 50.000 0.00 0.00 43.33 2.82
398 399 0.036164 TGCTGTTACCATTGGACGCT 59.964 50.000 10.37 0.00 0.00 5.07
445 446 0.917533 AGTGGAAGGATGATGCTGCT 59.082 50.000 0.00 0.00 0.00 4.24
464 465 2.695359 CTGGTGTACGCCTTGTTGTAT 58.305 47.619 25.27 0.00 0.00 2.29
466 467 3.852286 TGGTGTACGCCTTGTTGTATAG 58.148 45.455 25.27 0.00 0.00 1.31
467 468 3.510753 TGGTGTACGCCTTGTTGTATAGA 59.489 43.478 25.27 0.00 0.00 1.98
468 469 4.160814 TGGTGTACGCCTTGTTGTATAGAT 59.839 41.667 25.27 0.00 0.00 1.98
469 470 5.360429 TGGTGTACGCCTTGTTGTATAGATA 59.640 40.000 25.27 0.00 0.00 1.98
470 471 5.919141 GGTGTACGCCTTGTTGTATAGATAG 59.081 44.000 18.49 0.00 0.00 2.08
471 472 6.238842 GGTGTACGCCTTGTTGTATAGATAGA 60.239 42.308 18.49 0.00 0.00 1.98
474 475 9.070179 TGTACGCCTTGTTGTATAGATAGATAA 57.930 33.333 0.00 0.00 0.00 1.75
514 515 0.787787 TGAAAAACGATGTCGGAGCG 59.212 50.000 7.38 0.00 44.95 5.03
745 778 4.087892 CACCGTGCCCTCCCTCAG 62.088 72.222 0.00 0.00 0.00 3.35
763 796 1.004891 GTCCCTCTCCCCTCCCATT 59.995 63.158 0.00 0.00 0.00 3.16
932 977 6.153680 TCCTCCTTGTTATTGTTGTTGTTGTT 59.846 34.615 0.00 0.00 0.00 2.83
933 978 6.255453 CCTCCTTGTTATTGTTGTTGTTGTTG 59.745 38.462 0.00 0.00 0.00 3.33
934 979 6.692486 TCCTTGTTATTGTTGTTGTTGTTGT 58.308 32.000 0.00 0.00 0.00 3.32
935 980 7.827701 TCCTTGTTATTGTTGTTGTTGTTGTA 58.172 30.769 0.00 0.00 0.00 2.41
936 981 7.971168 TCCTTGTTATTGTTGTTGTTGTTGTAG 59.029 33.333 0.00 0.00 0.00 2.74
937 982 7.221838 CCTTGTTATTGTTGTTGTTGTTGTAGG 59.778 37.037 0.00 0.00 0.00 3.18
978 1023 2.554462 CTCTCTCTCTGTTCGTGGTTGA 59.446 50.000 0.00 0.00 0.00 3.18
981 1039 1.613925 CTCTCTGTTCGTGGTTGAGGA 59.386 52.381 0.00 0.00 0.00 3.71
985 1043 0.679505 TGTTCGTGGTTGAGGAGGAG 59.320 55.000 0.00 0.00 0.00 3.69
987 1045 1.192146 TTCGTGGTTGAGGAGGAGGG 61.192 60.000 0.00 0.00 0.00 4.30
1059 1117 3.771160 GTGGTGTCCCCGCGATCT 61.771 66.667 8.23 0.00 33.11 2.75
1324 1391 1.840650 ACCCTGTGAGTGCTCTGCT 60.841 57.895 0.00 0.00 0.00 4.24
1326 1393 0.954449 CCCTGTGAGTGCTCTGCTTG 60.954 60.000 0.00 0.00 0.00 4.01
1328 1395 1.575576 CTGTGAGTGCTCTGCTTGCC 61.576 60.000 0.00 0.00 0.00 4.52
1332 1399 4.357279 GTGCTCTGCTTGCCCCCT 62.357 66.667 0.00 0.00 0.00 4.79
1342 1409 0.695347 CTTGCCCCCTTCTTCTCTGT 59.305 55.000 0.00 0.00 0.00 3.41
1344 1411 0.693049 TGCCCCCTTCTTCTCTGTTC 59.307 55.000 0.00 0.00 0.00 3.18
1347 1414 1.557371 CCCCCTTCTTCTCTGTTCCTC 59.443 57.143 0.00 0.00 0.00 3.71
1348 1415 1.557371 CCCCTTCTTCTCTGTTCCTCC 59.443 57.143 0.00 0.00 0.00 4.30
1349 1416 2.545810 CCCTTCTTCTCTGTTCCTCCT 58.454 52.381 0.00 0.00 0.00 3.69
1350 1417 2.499693 CCCTTCTTCTCTGTTCCTCCTC 59.500 54.545 0.00 0.00 0.00 3.71
1351 1418 2.499693 CCTTCTTCTCTGTTCCTCCTCC 59.500 54.545 0.00 0.00 0.00 4.30
1382 1457 2.376518 CTCTGGATCTCTAGCTCCTCCT 59.623 54.545 0.00 0.00 31.86 3.69
1388 1463 0.260230 CTCTAGCTCCTCCTGTGGGA 59.740 60.000 0.00 0.00 39.70 4.37
1392 1467 1.376649 AGCTCCTCCTGTGGGAAAAT 58.623 50.000 0.00 0.00 41.69 1.82
1422 1503 2.519013 GTTTTGATCTGGTTGCCTCCT 58.481 47.619 0.00 0.00 0.00 3.69
1575 1656 3.077556 AAGGGGATCGACAGCGCT 61.078 61.111 2.64 2.64 37.46 5.92
1617 1698 0.326264 ACTTCATGAGAGGTGCCCAC 59.674 55.000 0.00 0.00 32.20 4.61
1646 1730 2.879026 CTCCACGATTCATCTCTCGGTA 59.121 50.000 0.00 0.00 39.16 4.02
1647 1731 2.617308 TCCACGATTCATCTCTCGGTAC 59.383 50.000 0.00 0.00 39.16 3.34
1651 1735 3.065510 ACGATTCATCTCTCGGTACACTG 59.934 47.826 0.00 0.00 39.16 3.66
1653 1737 1.834188 TCATCTCTCGGTACACTGCA 58.166 50.000 0.00 0.00 0.00 4.41
1665 1766 3.317993 GGTACACTGCAAATTCTGGTTGT 59.682 43.478 0.00 0.00 0.00 3.32
1752 1853 2.049063 AGCAACGCGTCTCTGGTC 60.049 61.111 14.44 0.00 0.00 4.02
1787 1888 0.172578 TTCGCCACTATGGTCTGTCG 59.827 55.000 0.00 0.00 40.46 4.35
1790 1891 0.818296 GCCACTATGGTCTGTCGTCT 59.182 55.000 0.00 0.00 40.46 4.18
1869 1970 8.510505 AGTTCAGCTAACTTGATTTCTGAATTC 58.489 33.333 0.00 0.00 46.61 2.17
1874 1975 7.663081 AGCTAACTTGATTTCTGAATTCTGACA 59.337 33.333 13.97 8.86 0.00 3.58
1875 1976 7.748241 GCTAACTTGATTTCTGAATTCTGACAC 59.252 37.037 13.97 9.24 0.00 3.67
1876 1977 6.566197 ACTTGATTTCTGAATTCTGACACC 57.434 37.500 13.97 0.45 0.00 4.16
1943 2044 2.772568 TTGCATTTCGGTGAGTGTTG 57.227 45.000 0.00 0.00 0.00 3.33
2017 2118 1.453762 GCTGGGATGCTCATTCTGGC 61.454 60.000 0.00 0.00 0.00 4.85
2024 2125 1.758936 TGCTCATTCTGGCTCCATTG 58.241 50.000 0.00 0.00 0.00 2.82
2025 2126 1.282738 TGCTCATTCTGGCTCCATTGA 59.717 47.619 0.00 0.00 0.00 2.57
2026 2127 2.092049 TGCTCATTCTGGCTCCATTGAT 60.092 45.455 0.00 0.00 0.00 2.57
2027 2128 2.957006 GCTCATTCTGGCTCCATTGATT 59.043 45.455 0.00 0.00 0.00 2.57
2028 2129 4.139786 GCTCATTCTGGCTCCATTGATTA 58.860 43.478 0.00 0.00 0.00 1.75
2029 2130 4.765856 GCTCATTCTGGCTCCATTGATTAT 59.234 41.667 0.00 0.00 0.00 1.28
2030 2131 5.243283 GCTCATTCTGGCTCCATTGATTATT 59.757 40.000 0.00 0.00 0.00 1.40
2031 2132 6.644248 TCATTCTGGCTCCATTGATTATTG 57.356 37.500 0.00 0.00 0.00 1.90
2032 2133 6.131264 TCATTCTGGCTCCATTGATTATTGT 58.869 36.000 0.00 0.00 0.00 2.71
2033 2134 6.608405 TCATTCTGGCTCCATTGATTATTGTT 59.392 34.615 0.00 0.00 0.00 2.83
2034 2135 6.855763 TTCTGGCTCCATTGATTATTGTTT 57.144 33.333 0.00 0.00 0.00 2.83
2035 2136 6.211587 TCTGGCTCCATTGATTATTGTTTG 57.788 37.500 0.00 0.00 0.00 2.93
2036 2137 5.716228 TCTGGCTCCATTGATTATTGTTTGT 59.284 36.000 0.00 0.00 0.00 2.83
2037 2138 6.211184 TCTGGCTCCATTGATTATTGTTTGTT 59.789 34.615 0.00 0.00 0.00 2.83
2038 2139 6.397272 TGGCTCCATTGATTATTGTTTGTTC 58.603 36.000 0.00 0.00 0.00 3.18
2039 2140 6.014755 TGGCTCCATTGATTATTGTTTGTTCA 60.015 34.615 0.00 0.00 0.00 3.18
2040 2141 6.532657 GGCTCCATTGATTATTGTTTGTTCAG 59.467 38.462 0.00 0.00 0.00 3.02
2041 2142 7.092716 GCTCCATTGATTATTGTTTGTTCAGT 58.907 34.615 0.00 0.00 0.00 3.41
2042 2143 7.599998 GCTCCATTGATTATTGTTTGTTCAGTT 59.400 33.333 0.00 0.00 0.00 3.16
2043 2144 9.480053 CTCCATTGATTATTGTTTGTTCAGTTT 57.520 29.630 0.00 0.00 0.00 2.66
2049 2170 7.434897 TGATTATTGTTTGTTCAGTTTGACAGC 59.565 33.333 0.00 0.00 0.00 4.40
2112 2233 7.042523 GGGCATGCATTTTTACTAATTCACATC 60.043 37.037 21.36 0.00 0.00 3.06
2190 2311 0.681175 AAGAACCCAATGCTGCAACC 59.319 50.000 6.36 0.00 0.00 3.77
2196 2317 0.099968 CCAATGCTGCAACCGATCTG 59.900 55.000 6.36 0.00 0.00 2.90
2203 2324 3.126858 TGCTGCAACCGATCTGTTTTATC 59.873 43.478 0.00 0.00 0.00 1.75
2224 2345 2.156917 GGTGGGTTAAGCCAGTACAAC 58.843 52.381 26.32 13.22 39.65 3.32
2226 2347 0.800631 GGGTTAAGCCAGTACAACGC 59.199 55.000 18.84 0.00 39.65 4.84
2238 2359 4.630069 CCAGTACAACGCTATTGCTAGTTT 59.370 41.667 0.00 0.00 36.97 2.66
2248 2369 4.795278 GCTATTGCTAGTTTGTTCATGCAC 59.205 41.667 0.00 0.00 36.03 4.57
2250 2371 2.488952 TGCTAGTTTGTTCATGCACGA 58.511 42.857 0.00 0.00 0.00 4.35
2255 2376 2.116366 GTTTGTTCATGCACGACCAAC 58.884 47.619 0.00 0.00 0.00 3.77
2256 2377 1.674359 TTGTTCATGCACGACCAACT 58.326 45.000 0.00 0.00 0.00 3.16
2275 2396 4.527509 ACTCTGTGTTGATCGAATCAGT 57.472 40.909 12.50 0.00 40.94 3.41
2276 2397 4.489810 ACTCTGTGTTGATCGAATCAGTC 58.510 43.478 12.50 0.00 40.94 3.51
2277 2398 3.849911 TCTGTGTTGATCGAATCAGTCC 58.150 45.455 12.50 0.00 40.94 3.85
2278 2399 3.511540 TCTGTGTTGATCGAATCAGTCCT 59.488 43.478 12.50 0.00 40.94 3.85
2279 2400 3.588955 TGTGTTGATCGAATCAGTCCTG 58.411 45.455 0.00 0.00 40.94 3.86
2280 2401 2.932614 GTGTTGATCGAATCAGTCCTGG 59.067 50.000 0.00 0.00 40.94 4.45
2281 2402 2.831526 TGTTGATCGAATCAGTCCTGGA 59.168 45.455 0.00 0.00 40.94 3.86
2282 2403 3.452264 TGTTGATCGAATCAGTCCTGGAT 59.548 43.478 0.00 0.00 40.94 3.41
2283 2404 4.054671 GTTGATCGAATCAGTCCTGGATC 58.945 47.826 0.00 0.00 40.94 3.36
2284 2405 2.294512 TGATCGAATCAGTCCTGGATCG 59.705 50.000 9.74 9.74 39.02 3.69
2298 2419 5.066505 GTCCTGGATCGAATGTAAAGCATTT 59.933 40.000 0.00 0.00 46.90 2.32
2314 2435 5.535753 AGCATTTAAAAAGCCAGTGTCTT 57.464 34.783 11.13 0.00 0.00 3.01
2319 2440 7.327032 GCATTTAAAAAGCCAGTGTCTTTAGAG 59.673 37.037 0.00 0.00 33.77 2.43
2321 2442 7.730364 TTAAAAAGCCAGTGTCTTTAGAGAG 57.270 36.000 0.00 0.00 33.77 3.20
2327 2448 4.459685 GCCAGTGTCTTTAGAGAGTAGACA 59.540 45.833 0.00 0.00 44.27 3.41
2328 2449 5.126384 GCCAGTGTCTTTAGAGAGTAGACAT 59.874 44.000 7.35 0.00 46.88 3.06
2358 2479 6.773976 AATTTGGACGGTGAATAATCATGT 57.226 33.333 0.00 0.00 38.01 3.21
2564 2685 4.020485 GGGTTCTGTTGACAGGTATGTAGT 60.020 45.833 10.97 0.00 43.91 2.73
2571 2692 3.969553 TGACAGGTATGTAGTCTCAGCT 58.030 45.455 0.00 0.00 40.68 4.24
2610 2732 5.059833 GGTTTATTATGCTAGCTGCTGAGT 58.940 41.667 17.23 0.00 43.37 3.41
2640 2762 4.392921 TCTTCAGTATCAGCCAGCTTAC 57.607 45.455 0.00 0.00 0.00 2.34
2690 2812 9.883142 TTTTGTGGTTTTTGATCTCTGTAATTT 57.117 25.926 0.00 0.00 0.00 1.82
2696 2818 9.196552 GGTTTTTGATCTCTGTAATTTTTCCAG 57.803 33.333 0.00 0.00 0.00 3.86
2722 2844 7.509141 TTGGTTTATAGCCACATCATGTATG 57.491 36.000 0.00 0.00 41.74 2.39
2764 2886 3.259876 CCAGTGGCCAAGTACACTACTTA 59.740 47.826 7.24 0.00 46.66 2.24
2771 2893 5.279356 GGCCAAGTACACTACTTACAAGTCT 60.279 44.000 0.00 0.00 46.66 3.24
2774 2896 7.226128 GCCAAGTACACTACTTACAAGTCTTTT 59.774 37.037 0.00 0.00 46.66 2.27
3012 3134 5.080068 GCACAGTTATTTTAGCGACTTGAC 58.920 41.667 0.00 0.00 0.00 3.18
3039 3161 2.556622 CGCCAGGTGGAAAGTATTGTTT 59.443 45.455 0.00 0.00 37.39 2.83
3054 3176 7.674471 AGTATTGTTTCTTCTAGGCAGTTTC 57.326 36.000 0.00 0.00 0.00 2.78
3241 3368 2.519771 AGAATGCATCTTGGGCTTCA 57.480 45.000 0.00 0.00 33.39 3.02
3242 3369 3.028094 AGAATGCATCTTGGGCTTCAT 57.972 42.857 0.00 0.00 33.39 2.57
3243 3370 4.174704 AGAATGCATCTTGGGCTTCATA 57.825 40.909 0.00 0.00 33.39 2.15
3387 3520 6.656314 TTCTATTGCAAGTACGTGTAATGG 57.344 37.500 26.60 24.37 35.06 3.16
3424 3557 6.855763 AATGCCTTGAGAATTATCACCAAA 57.144 33.333 1.37 0.00 0.00 3.28
3445 3578 3.767711 ACTCCCATCTTTCCTGTTTTCC 58.232 45.455 0.00 0.00 0.00 3.13
3565 3699 1.589716 GCGCACTTCCATGCCTCTTT 61.590 55.000 0.30 0.00 42.99 2.52
3566 3700 0.883833 CGCACTTCCATGCCTCTTTT 59.116 50.000 0.00 0.00 42.99 2.27
3720 3883 7.122048 TCTCCTGAATGAGAAGATAGACTTGA 58.878 38.462 0.00 0.00 38.41 3.02
3826 3989 5.649782 ATCAAATGGTCCAGCAGTTAAAG 57.350 39.130 0.00 0.00 0.00 1.85
3964 4137 5.643421 ATAGTTTCTGCTTGATCCATCCT 57.357 39.130 0.00 0.00 0.00 3.24
4013 4186 1.035923 TTCATCTAGAGGCCAGAGCG 58.964 55.000 5.01 0.00 41.24 5.03
4535 4709 9.836864 TTATATTTACTTGCATCTGTCATCTGT 57.163 29.630 0.00 0.00 0.00 3.41
4936 5114 6.012113 TGATATCATAGCCCAAAAGGGAATG 58.988 40.000 4.37 7.28 40.01 2.67
4990 5168 9.520515 ACCAAAATCTTGTAGTAATTGATGTCT 57.479 29.630 0.00 0.00 0.00 3.41
5031 5209 3.368323 CCTTGTTGTTTCAGGTTGCAGTT 60.368 43.478 0.00 0.00 0.00 3.16
5151 5329 9.066892 ACTCTTGATATTAAAGACTTTGTTGCA 57.933 29.630 10.80 0.34 30.61 4.08
5350 5529 8.964476 ACATGAATACTGAAATAATTCGGACT 57.036 30.769 6.36 0.00 43.43 3.85
5408 5587 2.365293 GTCCCACATTTTTGTTCTGCCT 59.635 45.455 0.00 0.00 0.00 4.75
5409 5588 2.364970 TCCCACATTTTTGTTCTGCCTG 59.635 45.455 0.00 0.00 0.00 4.85
5410 5589 2.137523 CCACATTTTTGTTCTGCCTGC 58.862 47.619 0.00 0.00 0.00 4.85
5411 5590 2.137523 CACATTTTTGTTCTGCCTGCC 58.862 47.619 0.00 0.00 0.00 4.85
5567 5746 5.248020 ACATTTTCCATTGTTTAGCCCATGA 59.752 36.000 0.00 0.00 0.00 3.07
5585 5764 5.124457 CCCATGACAATAGTTGAGGTTCAAG 59.876 44.000 0.00 0.00 37.00 3.02
5651 5831 1.595311 TGGACCAAGGATATGTGGCT 58.405 50.000 0.00 0.00 38.58 4.75
5881 6061 2.755208 GCCACTTGGTAAGGTTCCCTTT 60.755 50.000 0.06 0.00 37.86 3.11
6101 6287 6.015940 CCTCCTACTTTTGCAAGTCTTGAAAT 60.016 38.462 16.99 0.06 42.66 2.17
6208 6395 0.103208 CTCCGCGCTGTAGAGGAAAT 59.897 55.000 5.56 0.00 39.55 2.17
6247 6435 1.542915 CACTCCCTGAAATTGTGCTGG 59.457 52.381 0.00 0.00 0.00 4.85
6258 6446 2.281484 GTGCTGGCGTTCCTTCCA 60.281 61.111 0.00 0.00 0.00 3.53
6379 6567 4.698583 ACAGCAAGAAGAAGATGAATGC 57.301 40.909 0.00 0.00 0.00 3.56
6530 6718 9.817809 CTAGGCTTTTAATGTGACTTCAGTATA 57.182 33.333 0.00 0.00 0.00 1.47
6558 6746 5.626543 CCTGACATATCGCAATAATGTTTGC 59.373 40.000 3.38 3.38 46.70 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 1.461127 GCGTTACATGGCATAGCTAGC 59.539 52.381 6.62 6.62 0.00 3.42
13 14 2.476619 GTGCGTTACATGGCATAGCTAG 59.523 50.000 0.00 0.00 41.83 3.42
14 15 2.102420 AGTGCGTTACATGGCATAGCTA 59.898 45.455 0.00 0.00 41.83 3.32
15 16 1.134401 AGTGCGTTACATGGCATAGCT 60.134 47.619 0.00 0.00 41.83 3.32
16 17 1.299541 AGTGCGTTACATGGCATAGC 58.700 50.000 0.00 1.99 41.83 2.97
17 18 4.749598 TGATAAGTGCGTTACATGGCATAG 59.250 41.667 0.00 0.00 41.83 2.23
18 19 4.509970 GTGATAAGTGCGTTACATGGCATA 59.490 41.667 0.00 0.00 41.83 3.14
19 20 3.312421 GTGATAAGTGCGTTACATGGCAT 59.688 43.478 0.00 0.00 41.83 4.40
20 21 2.675844 GTGATAAGTGCGTTACATGGCA 59.324 45.455 0.00 0.00 36.70 4.92
21 22 2.031683 GGTGATAAGTGCGTTACATGGC 59.968 50.000 0.00 0.00 0.00 4.40
22 23 2.284150 CGGTGATAAGTGCGTTACATGG 59.716 50.000 0.00 0.00 0.00 3.66
23 24 2.284150 CCGGTGATAAGTGCGTTACATG 59.716 50.000 0.00 0.00 0.00 3.21
24 25 2.093869 ACCGGTGATAAGTGCGTTACAT 60.094 45.455 6.12 0.00 0.00 2.29
25 26 1.273048 ACCGGTGATAAGTGCGTTACA 59.727 47.619 6.12 0.00 0.00 2.41
26 27 1.922545 GACCGGTGATAAGTGCGTTAC 59.077 52.381 14.63 0.00 0.00 2.50
27 28 1.820519 AGACCGGTGATAAGTGCGTTA 59.179 47.619 14.63 0.00 0.00 3.18
28 29 0.606604 AGACCGGTGATAAGTGCGTT 59.393 50.000 14.63 0.00 0.00 4.84
29 30 0.172803 GAGACCGGTGATAAGTGCGT 59.827 55.000 14.63 0.00 0.00 5.24
30 31 0.866061 CGAGACCGGTGATAAGTGCG 60.866 60.000 14.63 0.00 0.00 5.34
31 32 1.146358 GCGAGACCGGTGATAAGTGC 61.146 60.000 14.63 1.83 36.06 4.40
32 33 0.527817 GGCGAGACCGGTGATAAGTG 60.528 60.000 14.63 0.00 36.06 3.16
33 34 0.683504 AGGCGAGACCGGTGATAAGT 60.684 55.000 14.63 0.00 46.52 2.24
34 35 0.460311 AAGGCGAGACCGGTGATAAG 59.540 55.000 14.63 0.00 46.52 1.73
35 36 0.899720 AAAGGCGAGACCGGTGATAA 59.100 50.000 14.63 0.00 46.52 1.75
36 37 0.899720 AAAAGGCGAGACCGGTGATA 59.100 50.000 14.63 0.00 46.52 2.15
37 38 0.673644 CAAAAGGCGAGACCGGTGAT 60.674 55.000 14.63 0.00 46.52 3.06
38 39 1.301401 CAAAAGGCGAGACCGGTGA 60.301 57.895 14.63 0.00 46.52 4.02
39 40 2.325082 CCAAAAGGCGAGACCGGTG 61.325 63.158 14.63 0.00 46.52 4.94
40 41 2.032071 CCAAAAGGCGAGACCGGT 59.968 61.111 6.92 6.92 46.52 5.28
41 42 3.431725 GCCAAAAGGCGAGACCGG 61.432 66.667 0.00 0.00 46.52 5.28
42 43 2.358737 AGCCAAAAGGCGAGACCG 60.359 61.111 0.19 0.00 46.52 4.79
43 44 1.003233 AGAGCCAAAAGGCGAGACC 60.003 57.895 0.19 0.00 40.23 3.85
44 45 1.916697 GCAGAGCCAAAAGGCGAGAC 61.917 60.000 0.19 0.00 40.23 3.36
45 46 1.672356 GCAGAGCCAAAAGGCGAGA 60.672 57.895 0.19 0.00 40.23 4.04
46 47 1.239968 AAGCAGAGCCAAAAGGCGAG 61.240 55.000 0.19 0.00 40.23 5.03
47 48 1.228245 AAGCAGAGCCAAAAGGCGA 60.228 52.632 0.19 0.00 40.23 5.54
48 49 1.211190 GAAGCAGAGCCAAAAGGCG 59.789 57.895 0.19 0.00 40.23 5.52
49 50 1.211190 CGAAGCAGAGCCAAAAGGC 59.789 57.895 0.00 0.00 0.00 4.35
50 51 1.238439 TTCGAAGCAGAGCCAAAAGG 58.762 50.000 0.00 0.00 0.00 3.11
51 52 2.291741 AGTTTCGAAGCAGAGCCAAAAG 59.708 45.455 14.70 0.00 0.00 2.27
52 53 2.297701 AGTTTCGAAGCAGAGCCAAAA 58.702 42.857 14.70 0.00 0.00 2.44
53 54 1.967319 AGTTTCGAAGCAGAGCCAAA 58.033 45.000 14.70 0.00 0.00 3.28
54 55 1.603802 CAAGTTTCGAAGCAGAGCCAA 59.396 47.619 14.70 0.00 0.00 4.52
55 56 1.229428 CAAGTTTCGAAGCAGAGCCA 58.771 50.000 14.70 0.00 0.00 4.75
56 57 0.519077 CCAAGTTTCGAAGCAGAGCC 59.481 55.000 14.70 0.00 0.00 4.70
57 58 0.110010 GCCAAGTTTCGAAGCAGAGC 60.110 55.000 14.70 9.23 0.00 4.09
58 59 1.196354 CAGCCAAGTTTCGAAGCAGAG 59.804 52.381 14.70 3.11 0.00 3.35
59 60 1.229428 CAGCCAAGTTTCGAAGCAGA 58.771 50.000 14.70 0.00 0.00 4.26
60 61 0.386478 GCAGCCAAGTTTCGAAGCAG 60.386 55.000 14.70 4.70 0.00 4.24
61 62 1.654220 GCAGCCAAGTTTCGAAGCA 59.346 52.632 14.70 0.00 0.00 3.91
62 63 1.081175 GGCAGCCAAGTTTCGAAGC 60.081 57.895 6.55 3.49 0.00 3.86
63 64 1.734465 CTAGGCAGCCAAGTTTCGAAG 59.266 52.381 15.80 0.00 0.00 3.79
64 65 1.808411 CTAGGCAGCCAAGTTTCGAA 58.192 50.000 15.80 0.00 0.00 3.71
65 66 0.673644 GCTAGGCAGCCAAGTTTCGA 60.674 55.000 15.80 0.00 42.37 3.71
66 67 1.796796 GCTAGGCAGCCAAGTTTCG 59.203 57.895 15.80 0.00 42.37 3.46
76 77 1.519455 CGGAACCGAAGCTAGGCAG 60.519 63.158 7.53 0.00 42.83 4.85
77 78 1.823169 AACGGAACCGAAGCTAGGCA 61.823 55.000 20.14 0.00 42.83 4.75
78 79 0.672711 AAACGGAACCGAAGCTAGGC 60.673 55.000 20.14 0.00 42.83 3.93
79 80 2.094338 ACTAAACGGAACCGAAGCTAGG 60.094 50.000 20.14 6.61 42.83 3.02
80 81 3.227810 ACTAAACGGAACCGAAGCTAG 57.772 47.619 20.14 14.39 42.83 3.42
81 82 3.665745 AACTAAACGGAACCGAAGCTA 57.334 42.857 20.14 4.65 42.83 3.32
82 83 2.538512 AACTAAACGGAACCGAAGCT 57.461 45.000 20.14 3.23 42.83 3.74
83 84 2.350102 CCAAACTAAACGGAACCGAAGC 60.350 50.000 20.14 0.00 42.83 3.86
84 85 2.874086 ACCAAACTAAACGGAACCGAAG 59.126 45.455 20.14 14.71 42.83 3.79
85 86 2.871633 GACCAAACTAAACGGAACCGAA 59.128 45.455 20.14 4.20 42.83 4.30
86 87 2.102925 AGACCAAACTAAACGGAACCGA 59.897 45.455 20.14 0.00 42.83 4.69
87 88 2.486918 AGACCAAACTAAACGGAACCG 58.513 47.619 11.83 11.83 46.03 4.44
88 89 3.878699 TCAAGACCAAACTAAACGGAACC 59.121 43.478 0.00 0.00 0.00 3.62
89 90 4.812626 TCTCAAGACCAAACTAAACGGAAC 59.187 41.667 0.00 0.00 0.00 3.62
90 91 4.812626 GTCTCAAGACCAAACTAAACGGAA 59.187 41.667 0.00 0.00 39.07 4.30
91 92 4.100498 AGTCTCAAGACCAAACTAAACGGA 59.900 41.667 6.54 0.00 45.85 4.69
92 93 4.377897 AGTCTCAAGACCAAACTAAACGG 58.622 43.478 6.54 0.00 45.85 4.44
93 94 5.175856 CAGAGTCTCAAGACCAAACTAAACG 59.824 44.000 6.54 0.00 45.85 3.60
94 95 6.049790 ACAGAGTCTCAAGACCAAACTAAAC 58.950 40.000 6.54 0.00 45.85 2.01
95 96 6.235231 ACAGAGTCTCAAGACCAAACTAAA 57.765 37.500 6.54 0.00 45.85 1.85
96 97 5.871396 ACAGAGTCTCAAGACCAAACTAA 57.129 39.130 6.54 0.00 45.85 2.24
97 98 5.871396 AACAGAGTCTCAAGACCAAACTA 57.129 39.130 6.54 0.00 45.85 2.24
98 99 4.762289 AACAGAGTCTCAAGACCAAACT 57.238 40.909 6.54 0.00 45.85 2.66
99 100 4.496507 GCAAACAGAGTCTCAAGACCAAAC 60.497 45.833 6.54 0.00 45.85 2.93
100 101 3.627577 GCAAACAGAGTCTCAAGACCAAA 59.372 43.478 6.54 0.00 45.85 3.28
101 102 3.206150 GCAAACAGAGTCTCAAGACCAA 58.794 45.455 6.54 0.00 45.85 3.67
102 103 2.170397 TGCAAACAGAGTCTCAAGACCA 59.830 45.455 6.54 0.00 45.85 4.02
103 104 2.545946 GTGCAAACAGAGTCTCAAGACC 59.454 50.000 6.54 0.00 45.85 3.85
104 105 2.219674 CGTGCAAACAGAGTCTCAAGAC 59.780 50.000 1.94 1.79 45.08 3.01
105 106 2.473816 CGTGCAAACAGAGTCTCAAGA 58.526 47.619 1.94 0.00 0.00 3.02
106 107 1.070309 GCGTGCAAACAGAGTCTCAAG 60.070 52.381 1.94 0.00 0.00 3.02
107 108 0.937304 GCGTGCAAACAGAGTCTCAA 59.063 50.000 1.94 0.00 0.00 3.02
108 109 0.104855 AGCGTGCAAACAGAGTCTCA 59.895 50.000 1.94 0.00 0.00 3.27
109 110 0.510359 CAGCGTGCAAACAGAGTCTC 59.490 55.000 0.00 0.00 0.00 3.36
110 111 1.502163 GCAGCGTGCAAACAGAGTCT 61.502 55.000 0.00 0.00 44.26 3.24
111 112 1.082496 GCAGCGTGCAAACAGAGTC 60.082 57.895 0.00 0.00 44.26 3.36
112 113 3.025619 GCAGCGTGCAAACAGAGT 58.974 55.556 0.00 0.00 44.26 3.24
121 122 0.454957 CACAACAATAGGCAGCGTGC 60.455 55.000 0.00 1.92 44.08 5.34
122 123 0.168788 CCACAACAATAGGCAGCGTG 59.831 55.000 0.00 0.00 0.00 5.34
123 124 0.960364 CCCACAACAATAGGCAGCGT 60.960 55.000 0.00 0.00 0.00 5.07
124 125 1.802636 CCCACAACAATAGGCAGCG 59.197 57.895 0.00 0.00 0.00 5.18
125 126 1.512694 GCCCACAACAATAGGCAGC 59.487 57.895 0.00 0.00 45.07 5.25
128 129 4.736126 AATAAAGCCCACAACAATAGGC 57.264 40.909 0.00 0.00 46.13 3.93
143 144 8.677871 AAACGTCCGGCTTTAAATTAATAAAG 57.322 30.769 0.00 6.41 42.93 1.85
144 145 8.513774 AGAAACGTCCGGCTTTAAATTAATAAA 58.486 29.630 0.00 0.00 0.00 1.40
145 146 7.964011 CAGAAACGTCCGGCTTTAAATTAATAA 59.036 33.333 0.00 0.00 0.00 1.40
146 147 7.333921 TCAGAAACGTCCGGCTTTAAATTAATA 59.666 33.333 0.00 0.00 0.00 0.98
147 148 6.149807 TCAGAAACGTCCGGCTTTAAATTAAT 59.850 34.615 0.00 0.00 0.00 1.40
148 149 5.469421 TCAGAAACGTCCGGCTTTAAATTAA 59.531 36.000 0.00 0.00 0.00 1.40
149 150 4.996122 TCAGAAACGTCCGGCTTTAAATTA 59.004 37.500 0.00 0.00 0.00 1.40
150 151 3.816523 TCAGAAACGTCCGGCTTTAAATT 59.183 39.130 0.00 0.00 0.00 1.82
151 152 3.187842 GTCAGAAACGTCCGGCTTTAAAT 59.812 43.478 0.00 0.00 0.00 1.40
152 153 2.545106 GTCAGAAACGTCCGGCTTTAAA 59.455 45.455 0.00 0.00 0.00 1.52
153 154 2.137523 GTCAGAAACGTCCGGCTTTAA 58.862 47.619 0.00 0.00 0.00 1.52
154 155 1.787012 GTCAGAAACGTCCGGCTTTA 58.213 50.000 0.00 0.00 0.00 1.85
155 156 1.219522 CGTCAGAAACGTCCGGCTTT 61.220 55.000 0.00 0.00 46.42 3.51
156 157 1.663702 CGTCAGAAACGTCCGGCTT 60.664 57.895 0.00 0.00 46.42 4.35
157 158 2.049433 CGTCAGAAACGTCCGGCT 60.049 61.111 0.00 0.00 46.42 5.52
188 189 3.874543 GGTTTGTTTTGCCGGATCTTTTT 59.125 39.130 5.05 0.00 0.00 1.94
189 190 3.118592 TGGTTTGTTTTGCCGGATCTTTT 60.119 39.130 5.05 0.00 0.00 2.27
190 191 2.432510 TGGTTTGTTTTGCCGGATCTTT 59.567 40.909 5.05 0.00 0.00 2.52
191 192 2.035632 TGGTTTGTTTTGCCGGATCTT 58.964 42.857 5.05 0.00 0.00 2.40
192 193 1.698506 TGGTTTGTTTTGCCGGATCT 58.301 45.000 5.05 0.00 0.00 2.75
193 194 2.517650 TTGGTTTGTTTTGCCGGATC 57.482 45.000 5.05 0.00 0.00 3.36
194 195 3.398406 GAATTGGTTTGTTTTGCCGGAT 58.602 40.909 5.05 0.00 0.00 4.18
195 196 2.483889 GGAATTGGTTTGTTTTGCCGGA 60.484 45.455 5.05 0.00 0.00 5.14
196 197 1.870402 GGAATTGGTTTGTTTTGCCGG 59.130 47.619 0.00 0.00 0.00 6.13
197 198 1.870402 GGGAATTGGTTTGTTTTGCCG 59.130 47.619 0.00 0.00 0.00 5.69
198 199 1.870402 CGGGAATTGGTTTGTTTTGCC 59.130 47.619 0.00 0.00 0.00 4.52
199 200 2.556257 ACGGGAATTGGTTTGTTTTGC 58.444 42.857 0.00 0.00 0.00 3.68
200 201 4.202172 ACCTACGGGAATTGGTTTGTTTTG 60.202 41.667 0.00 0.00 36.25 2.44
201 202 3.962063 ACCTACGGGAATTGGTTTGTTTT 59.038 39.130 0.00 0.00 36.25 2.43
202 203 3.568443 ACCTACGGGAATTGGTTTGTTT 58.432 40.909 0.00 0.00 36.25 2.83
203 204 3.232720 ACCTACGGGAATTGGTTTGTT 57.767 42.857 0.00 0.00 36.25 2.83
204 205 2.963599 ACCTACGGGAATTGGTTTGT 57.036 45.000 0.00 0.00 36.25 2.83
205 206 3.630312 CCATACCTACGGGAATTGGTTTG 59.370 47.826 0.00 0.00 36.25 2.93
206 207 3.267551 ACCATACCTACGGGAATTGGTTT 59.732 43.478 0.00 0.00 38.47 3.27
207 208 2.848071 ACCATACCTACGGGAATTGGTT 59.152 45.455 0.00 0.00 38.47 3.67
208 209 2.171870 CACCATACCTACGGGAATTGGT 59.828 50.000 0.00 0.00 40.43 3.67
209 210 2.486548 CCACCATACCTACGGGAATTGG 60.487 54.545 0.00 0.00 36.37 3.16
210 211 2.436542 TCCACCATACCTACGGGAATTG 59.563 50.000 0.00 0.00 36.25 2.32
211 212 2.766736 TCCACCATACCTACGGGAATT 58.233 47.619 0.00 0.00 36.25 2.17
212 213 2.482414 TCCACCATACCTACGGGAAT 57.518 50.000 0.00 0.00 36.25 3.01
213 214 2.250921 TTCCACCATACCTACGGGAA 57.749 50.000 0.00 0.00 36.25 3.97
214 215 2.250921 TTTCCACCATACCTACGGGA 57.749 50.000 0.00 0.00 36.25 5.14
215 216 2.486548 CCATTTCCACCATACCTACGGG 60.487 54.545 0.00 0.00 38.88 5.28
216 217 2.486548 CCCATTTCCACCATACCTACGG 60.487 54.545 0.00 0.00 0.00 4.02
217 218 2.171870 ACCCATTTCCACCATACCTACG 59.828 50.000 0.00 0.00 0.00 3.51
218 219 3.201266 TGACCCATTTCCACCATACCTAC 59.799 47.826 0.00 0.00 0.00 3.18
219 220 3.201266 GTGACCCATTTCCACCATACCTA 59.799 47.826 0.00 0.00 0.00 3.08
220 221 2.025321 GTGACCCATTTCCACCATACCT 60.025 50.000 0.00 0.00 0.00 3.08
221 222 2.375146 GTGACCCATTTCCACCATACC 58.625 52.381 0.00 0.00 0.00 2.73
222 223 2.014128 CGTGACCCATTTCCACCATAC 58.986 52.381 0.00 0.00 0.00 2.39
223 224 1.065053 CCGTGACCCATTTCCACCATA 60.065 52.381 0.00 0.00 0.00 2.74
224 225 0.323360 CCGTGACCCATTTCCACCAT 60.323 55.000 0.00 0.00 0.00 3.55
225 226 1.074072 CCGTGACCCATTTCCACCA 59.926 57.895 0.00 0.00 0.00 4.17
226 227 0.538746 AACCGTGACCCATTTCCACC 60.539 55.000 0.00 0.00 0.00 4.61
227 228 1.000717 CAAACCGTGACCCATTTCCAC 60.001 52.381 0.00 0.00 0.00 4.02
228 229 1.323412 CAAACCGTGACCCATTTCCA 58.677 50.000 0.00 0.00 0.00 3.53
229 230 0.038618 GCAAACCGTGACCCATTTCC 60.039 55.000 0.00 0.00 0.00 3.13
230 231 0.671251 TGCAAACCGTGACCCATTTC 59.329 50.000 0.00 0.00 0.00 2.17
231 232 1.068434 CTTGCAAACCGTGACCCATTT 59.932 47.619 0.00 0.00 0.00 2.32
232 233 0.673437 CTTGCAAACCGTGACCCATT 59.327 50.000 0.00 0.00 0.00 3.16
233 234 0.179004 TCTTGCAAACCGTGACCCAT 60.179 50.000 0.00 0.00 0.00 4.00
234 235 0.179004 ATCTTGCAAACCGTGACCCA 60.179 50.000 0.00 0.00 0.00 4.51
235 236 0.521735 GATCTTGCAAACCGTGACCC 59.478 55.000 0.00 0.00 0.00 4.46
236 237 0.521735 GGATCTTGCAAACCGTGACC 59.478 55.000 0.00 0.00 0.00 4.02
237 238 0.521735 GGGATCTTGCAAACCGTGAC 59.478 55.000 0.00 0.00 0.00 3.67
238 239 0.109532 TGGGATCTTGCAAACCGTGA 59.890 50.000 0.00 0.00 0.00 4.35
239 240 0.240945 GTGGGATCTTGCAAACCGTG 59.759 55.000 0.00 0.00 0.00 4.94
240 241 0.179004 TGTGGGATCTTGCAAACCGT 60.179 50.000 0.00 0.00 0.00 4.83
241 242 0.958091 TTGTGGGATCTTGCAAACCG 59.042 50.000 0.00 0.00 0.00 4.44
242 243 3.467374 TTTTGTGGGATCTTGCAAACC 57.533 42.857 0.00 4.54 31.62 3.27
243 244 4.692228 TCTTTTTGTGGGATCTTGCAAAC 58.308 39.130 0.00 0.00 31.62 2.93
244 245 5.350504 TTCTTTTTGTGGGATCTTGCAAA 57.649 34.783 0.00 0.00 0.00 3.68
245 246 5.350504 TTTCTTTTTGTGGGATCTTGCAA 57.649 34.783 0.00 0.00 0.00 4.08
246 247 5.350504 TTTTCTTTTTGTGGGATCTTGCA 57.649 34.783 0.00 0.00 0.00 4.08
247 248 6.707608 AGAATTTTCTTTTTGTGGGATCTTGC 59.292 34.615 0.00 0.00 32.55 4.01
248 249 7.927629 TCAGAATTTTCTTTTTGTGGGATCTTG 59.072 33.333 0.00 0.00 34.74 3.02
249 250 8.021898 TCAGAATTTTCTTTTTGTGGGATCTT 57.978 30.769 0.00 0.00 34.74 2.40
250 251 7.506938 TCTCAGAATTTTCTTTTTGTGGGATCT 59.493 33.333 0.00 0.00 34.74 2.75
251 252 7.596621 GTCTCAGAATTTTCTTTTTGTGGGATC 59.403 37.037 0.00 0.00 34.74 3.36
252 253 7.436933 GTCTCAGAATTTTCTTTTTGTGGGAT 58.563 34.615 0.00 0.00 34.74 3.85
253 254 6.459573 CGTCTCAGAATTTTCTTTTTGTGGGA 60.460 38.462 0.00 0.00 34.74 4.37
254 255 5.687285 CGTCTCAGAATTTTCTTTTTGTGGG 59.313 40.000 0.00 0.00 34.74 4.61
255 256 5.687285 CCGTCTCAGAATTTTCTTTTTGTGG 59.313 40.000 0.00 0.00 34.74 4.17
256 257 6.265577 ACCGTCTCAGAATTTTCTTTTTGTG 58.734 36.000 0.00 0.00 34.74 3.33
257 258 6.451064 ACCGTCTCAGAATTTTCTTTTTGT 57.549 33.333 0.00 0.00 34.74 2.83
258 259 5.621228 CGACCGTCTCAGAATTTTCTTTTTG 59.379 40.000 0.00 0.00 34.74 2.44
259 260 5.526111 TCGACCGTCTCAGAATTTTCTTTTT 59.474 36.000 0.00 0.00 34.74 1.94
260 261 5.054477 TCGACCGTCTCAGAATTTTCTTTT 58.946 37.500 0.00 0.00 34.74 2.27
261 262 4.628074 TCGACCGTCTCAGAATTTTCTTT 58.372 39.130 0.00 0.00 34.74 2.52
262 263 4.252971 TCGACCGTCTCAGAATTTTCTT 57.747 40.909 0.00 0.00 34.74 2.52
263 264 3.936372 TCGACCGTCTCAGAATTTTCT 57.064 42.857 0.00 0.00 38.25 2.52
264 265 4.389077 ACATTCGACCGTCTCAGAATTTTC 59.611 41.667 0.00 0.00 31.70 2.29
265 266 4.315803 ACATTCGACCGTCTCAGAATTTT 58.684 39.130 0.00 0.00 31.70 1.82
266 267 3.926616 ACATTCGACCGTCTCAGAATTT 58.073 40.909 0.00 0.00 31.70 1.82
267 268 3.594603 ACATTCGACCGTCTCAGAATT 57.405 42.857 0.00 0.00 31.70 2.17
268 269 3.487042 CGTACATTCGACCGTCTCAGAAT 60.487 47.826 0.00 0.00 34.06 2.40
269 270 2.159612 CGTACATTCGACCGTCTCAGAA 60.160 50.000 0.00 0.00 0.00 3.02
270 271 1.395954 CGTACATTCGACCGTCTCAGA 59.604 52.381 0.00 0.00 0.00 3.27
271 272 1.531264 CCGTACATTCGACCGTCTCAG 60.531 57.143 0.00 0.00 0.00 3.35
272 273 0.448990 CCGTACATTCGACCGTCTCA 59.551 55.000 0.00 0.00 0.00 3.27
273 274 0.248377 CCCGTACATTCGACCGTCTC 60.248 60.000 0.00 0.00 0.00 3.36
274 275 0.677731 TCCCGTACATTCGACCGTCT 60.678 55.000 0.00 0.00 0.00 4.18
275 276 0.383231 ATCCCGTACATTCGACCGTC 59.617 55.000 0.00 0.00 0.00 4.79
276 277 0.383231 GATCCCGTACATTCGACCGT 59.617 55.000 0.00 0.00 0.00 4.83
277 278 0.666913 AGATCCCGTACATTCGACCG 59.333 55.000 0.00 0.00 0.00 4.79
278 279 4.516365 AATAGATCCCGTACATTCGACC 57.484 45.455 0.00 0.00 0.00 4.79
279 280 4.684703 CCAAATAGATCCCGTACATTCGAC 59.315 45.833 0.00 0.00 0.00 4.20
280 281 4.262292 CCCAAATAGATCCCGTACATTCGA 60.262 45.833 0.00 0.00 0.00 3.71
281 282 3.994392 CCCAAATAGATCCCGTACATTCG 59.006 47.826 0.00 0.00 0.00 3.34
282 283 3.751698 GCCCAAATAGATCCCGTACATTC 59.248 47.826 0.00 0.00 0.00 2.67
283 284 3.497942 GGCCCAAATAGATCCCGTACATT 60.498 47.826 0.00 0.00 0.00 2.71
284 285 2.039879 GGCCCAAATAGATCCCGTACAT 59.960 50.000 0.00 0.00 0.00 2.29
285 286 1.418637 GGCCCAAATAGATCCCGTACA 59.581 52.381 0.00 0.00 0.00 2.90
286 287 1.607251 CGGCCCAAATAGATCCCGTAC 60.607 57.143 0.00 0.00 0.00 3.67
287 288 0.682852 CGGCCCAAATAGATCCCGTA 59.317 55.000 0.00 0.00 0.00 4.02
288 289 1.450211 CGGCCCAAATAGATCCCGT 59.550 57.895 0.00 0.00 0.00 5.28
289 290 1.302511 CCGGCCCAAATAGATCCCG 60.303 63.158 0.00 0.00 35.74 5.14
290 291 1.603739 GCCGGCCCAAATAGATCCC 60.604 63.158 18.11 0.00 0.00 3.85
291 292 0.467290 TTGCCGGCCCAAATAGATCC 60.467 55.000 26.77 0.00 0.00 3.36
292 293 1.398692 TTTGCCGGCCCAAATAGATC 58.601 50.000 26.77 0.00 30.28 2.75
293 294 2.086610 ATTTGCCGGCCCAAATAGAT 57.913 45.000 26.77 0.99 42.04 1.98
294 295 1.754226 GAATTTGCCGGCCCAAATAGA 59.246 47.619 26.77 0.00 42.78 1.98
295 296 1.535860 CGAATTTGCCGGCCCAAATAG 60.536 52.381 26.77 16.52 42.78 1.73
296 297 0.457851 CGAATTTGCCGGCCCAAATA 59.542 50.000 26.77 0.00 42.78 1.40
297 298 1.217779 CGAATTTGCCGGCCCAAAT 59.782 52.632 26.77 20.89 44.81 2.32
298 299 2.653702 CGAATTTGCCGGCCCAAA 59.346 55.556 26.77 19.42 38.87 3.28
299 300 4.062656 GCGAATTTGCCGGCCCAA 62.063 61.111 26.77 17.73 0.00 4.12
313 314 0.037975 GGTTTACAGGTCGAAGGCGA 60.038 55.000 0.00 0.00 45.71 5.54
314 315 1.017701 GGGTTTACAGGTCGAAGGCG 61.018 60.000 0.00 0.00 39.35 5.52
315 316 0.035739 TGGGTTTACAGGTCGAAGGC 59.964 55.000 0.00 0.00 0.00 4.35
316 317 1.804601 GTGGGTTTACAGGTCGAAGG 58.195 55.000 0.00 0.00 0.00 3.46
317 318 1.425412 CGTGGGTTTACAGGTCGAAG 58.575 55.000 0.00 0.00 0.00 3.79
318 319 0.033781 CCGTGGGTTTACAGGTCGAA 59.966 55.000 0.00 0.00 0.00 3.71
319 320 1.114722 ACCGTGGGTTTACAGGTCGA 61.115 55.000 0.00 0.00 27.29 4.20
320 321 0.249996 AACCGTGGGTTTACAGGTCG 60.250 55.000 0.00 0.00 44.33 4.79
321 322 2.837532 TAACCGTGGGTTTACAGGTC 57.162 50.000 5.22 0.00 44.33 3.85
322 323 3.793819 AATAACCGTGGGTTTACAGGT 57.206 42.857 5.22 0.00 44.33 4.00
323 324 5.106197 GGTAAAATAACCGTGGGTTTACAGG 60.106 44.000 5.22 0.00 44.33 4.00
324 325 5.941733 GGTAAAATAACCGTGGGTTTACAG 58.058 41.667 5.22 0.00 44.33 2.74
325 326 5.956068 GGTAAAATAACCGTGGGTTTACA 57.044 39.130 5.22 0.00 44.33 2.41
336 337 2.033675 CCGGCCATTCGGTAAAATAACC 59.966 50.000 2.24 0.00 44.60 2.85
337 338 3.343380 CCGGCCATTCGGTAAAATAAC 57.657 47.619 2.24 0.00 44.60 1.89
347 348 0.450184 CTTGTAAACCCGGCCATTCG 59.550 55.000 2.24 0.00 0.00 3.34
348 349 1.828979 TCTTGTAAACCCGGCCATTC 58.171 50.000 2.24 0.00 0.00 2.67
349 350 2.525105 ATCTTGTAAACCCGGCCATT 57.475 45.000 2.24 0.00 0.00 3.16
350 351 2.495669 CAAATCTTGTAAACCCGGCCAT 59.504 45.455 2.24 0.00 0.00 4.40
351 352 1.889829 CAAATCTTGTAAACCCGGCCA 59.110 47.619 2.24 0.00 0.00 5.36
352 353 1.403647 GCAAATCTTGTAAACCCGGCC 60.404 52.381 0.00 0.00 0.00 6.13
353 354 1.403647 GGCAAATCTTGTAAACCCGGC 60.404 52.381 0.00 0.00 0.00 6.13
354 355 1.889829 TGGCAAATCTTGTAAACCCGG 59.110 47.619 0.00 0.00 0.00 5.73
355 356 2.817258 TCTGGCAAATCTTGTAAACCCG 59.183 45.455 0.00 0.00 0.00 5.28
356 357 4.079253 TCTCTGGCAAATCTTGTAAACCC 58.921 43.478 0.00 0.00 0.00 4.11
357 358 5.644644 CATCTCTGGCAAATCTTGTAAACC 58.355 41.667 0.00 0.00 0.00 3.27
358 359 5.098211 GCATCTCTGGCAAATCTTGTAAAC 58.902 41.667 0.00 0.00 0.00 2.01
359 360 5.012239 AGCATCTCTGGCAAATCTTGTAAA 58.988 37.500 0.00 0.00 0.00 2.01
360 361 4.397103 CAGCATCTCTGGCAAATCTTGTAA 59.603 41.667 0.00 0.00 39.15 2.41
361 362 3.943381 CAGCATCTCTGGCAAATCTTGTA 59.057 43.478 0.00 0.00 39.15 2.41
362 363 2.753452 CAGCATCTCTGGCAAATCTTGT 59.247 45.455 0.00 0.00 39.15 3.16
363 364 3.422417 CAGCATCTCTGGCAAATCTTG 57.578 47.619 0.00 0.00 39.15 3.02
383 384 1.732259 CTGTCAGCGTCCAATGGTAAC 59.268 52.381 0.00 0.00 0.00 2.50
384 385 1.943968 GCTGTCAGCGTCCAATGGTAA 60.944 52.381 9.53 0.00 0.00 2.85
385 386 0.391130 GCTGTCAGCGTCCAATGGTA 60.391 55.000 9.53 0.00 0.00 3.25
386 387 1.672356 GCTGTCAGCGTCCAATGGT 60.672 57.895 9.53 0.00 0.00 3.55
387 388 1.642037 CTGCTGTCAGCGTCCAATGG 61.642 60.000 19.68 0.00 46.26 3.16
388 389 0.671472 TCTGCTGTCAGCGTCCAATG 60.671 55.000 19.68 4.41 46.26 2.82
389 390 0.035317 TTCTGCTGTCAGCGTCCAAT 59.965 50.000 19.68 0.00 46.26 3.16
392 393 1.294659 CCTTTCTGCTGTCAGCGTCC 61.295 60.000 19.68 0.00 46.26 4.79
398 399 1.241165 CACATGCCTTTCTGCTGTCA 58.759 50.000 0.00 0.00 0.00 3.58
424 425 1.579698 CAGCATCATCCTTCCACTCG 58.420 55.000 0.00 0.00 0.00 4.18
445 446 2.843401 ATACAACAAGGCGTACACCA 57.157 45.000 2.11 0.00 0.00 4.17
467 468 9.607285 CGGCGTTGCTTTTATTTATTTATCTAT 57.393 29.630 0.00 0.00 0.00 1.98
468 469 8.614346 ACGGCGTTGCTTTTATTTATTTATCTA 58.386 29.630 6.77 0.00 0.00 1.98
469 470 7.477494 ACGGCGTTGCTTTTATTTATTTATCT 58.523 30.769 6.77 0.00 0.00 1.98
470 471 7.673810 ACGGCGTTGCTTTTATTTATTTATC 57.326 32.000 6.77 0.00 0.00 1.75
471 472 7.755822 TCAACGGCGTTGCTTTTATTTATTTAT 59.244 29.630 39.59 5.10 42.55 1.40
474 475 5.462405 TCAACGGCGTTGCTTTTATTTATT 58.538 33.333 39.59 6.58 42.55 1.40
731 764 3.775654 GGACTGAGGGAGGGCACG 61.776 72.222 0.00 0.00 0.00 5.34
732 765 3.403558 GGGACTGAGGGAGGGCAC 61.404 72.222 0.00 0.00 0.00 5.01
733 766 3.615811 AGGGACTGAGGGAGGGCA 61.616 66.667 0.00 0.00 37.18 5.36
734 767 2.766229 GAGGGACTGAGGGAGGGC 60.766 72.222 0.00 0.00 41.55 5.19
737 770 1.075600 GGGAGAGGGACTGAGGGAG 60.076 68.421 0.00 0.00 41.55 4.30
738 771 2.637640 GGGGAGAGGGACTGAGGGA 61.638 68.421 0.00 0.00 41.55 4.20
739 772 2.041405 GGGGAGAGGGACTGAGGG 60.041 72.222 0.00 0.00 41.55 4.30
740 773 1.075600 GAGGGGAGAGGGACTGAGG 60.076 68.421 0.00 0.00 41.55 3.86
741 774 1.075600 GGAGGGGAGAGGGACTGAG 60.076 68.421 0.00 0.00 41.55 3.35
742 775 2.637640 GGGAGGGGAGAGGGACTGA 61.638 68.421 0.00 0.00 41.55 3.41
743 776 2.041405 GGGAGGGGAGAGGGACTG 60.041 72.222 0.00 0.00 41.55 3.51
745 778 1.004891 AATGGGAGGGGAGAGGGAC 59.995 63.158 0.00 0.00 0.00 4.46
779 812 4.039092 TGGCAGAGGCAGGGAAGC 62.039 66.667 0.00 0.00 43.71 3.86
932 977 1.227249 CTCCTCCTCCTCCTCCTACA 58.773 60.000 0.00 0.00 0.00 2.74
933 978 0.481128 CCTCCTCCTCCTCCTCCTAC 59.519 65.000 0.00 0.00 0.00 3.18
934 979 0.703056 CCCTCCTCCTCCTCCTCCTA 60.703 65.000 0.00 0.00 0.00 2.94
935 980 2.018086 CCCTCCTCCTCCTCCTCCT 61.018 68.421 0.00 0.00 0.00 3.69
936 981 2.612251 CCCTCCTCCTCCTCCTCC 59.388 72.222 0.00 0.00 0.00 4.30
937 982 1.376249 ATCCCCTCCTCCTCCTCCTC 61.376 65.000 0.00 0.00 0.00 3.71
978 1023 3.039526 CCTCCTCCCCCTCCTCCT 61.040 72.222 0.00 0.00 0.00 3.69
981 1039 3.039526 CCTCCTCCTCCCCCTCCT 61.040 72.222 0.00 0.00 0.00 3.69
985 1043 3.174265 CATGCCTCCTCCTCCCCC 61.174 72.222 0.00 0.00 0.00 5.40
987 1045 3.883549 GGCATGCCTCCTCCTCCC 61.884 72.222 29.98 0.00 0.00 4.30
1059 1117 4.451150 CGCTGCCGGAAGTAGCCA 62.451 66.667 12.24 0.00 36.44 4.75
1324 1391 1.073923 GAACAGAGAAGAAGGGGGCAA 59.926 52.381 0.00 0.00 0.00 4.52
1326 1393 0.034960 GGAACAGAGAAGAAGGGGGC 60.035 60.000 0.00 0.00 0.00 5.80
1328 1395 1.557371 GGAGGAACAGAGAAGAAGGGG 59.443 57.143 0.00 0.00 0.00 4.79
1332 1399 3.436243 GAGGAGGAGGAACAGAGAAGAA 58.564 50.000 0.00 0.00 0.00 2.52
1342 1409 2.690452 CGGGAGGAGGAGGAGGAA 59.310 66.667 0.00 0.00 0.00 3.36
1347 1414 4.150454 AGAGGCGGGAGGAGGAGG 62.150 72.222 0.00 0.00 0.00 4.30
1348 1415 2.837291 CAGAGGCGGGAGGAGGAG 60.837 72.222 0.00 0.00 0.00 3.69
1349 1416 4.465446 CCAGAGGCGGGAGGAGGA 62.465 72.222 0.00 0.00 0.00 3.71
1350 1417 3.765257 ATCCAGAGGCGGGAGGAGG 62.765 68.421 2.31 0.00 37.96 4.30
1351 1418 2.123077 ATCCAGAGGCGGGAGGAG 60.123 66.667 2.31 0.00 37.96 3.69
1382 1457 2.176798 ACCTCCACTGAATTTTCCCACA 59.823 45.455 0.00 0.00 0.00 4.17
1388 1463 6.239402 CCAGATCAAAACCTCCACTGAATTTT 60.239 38.462 0.00 0.00 0.00 1.82
1392 1467 3.138283 ACCAGATCAAAACCTCCACTGAA 59.862 43.478 0.00 0.00 0.00 3.02
1422 1503 9.575868 TTATTGTATCTACCCAACAAGAACAAA 57.424 29.630 0.00 0.00 36.62 2.83
1575 1656 0.820226 CCTTCCAGCTCATCTCGACA 59.180 55.000 0.00 0.00 0.00 4.35
1617 1698 1.144936 GAATCGTGGAGCAGGAGGG 59.855 63.158 0.00 0.00 31.81 4.30
1646 1730 3.446873 TGAACAACCAGAATTTGCAGTGT 59.553 39.130 0.00 0.00 0.00 3.55
1647 1731 4.044336 TGAACAACCAGAATTTGCAGTG 57.956 40.909 0.00 0.00 0.00 3.66
1651 1735 3.656559 AGCATGAACAACCAGAATTTGC 58.343 40.909 0.00 0.00 0.00 3.68
1653 1737 5.510179 CCAGAAGCATGAACAACCAGAATTT 60.510 40.000 0.00 0.00 0.00 1.82
1665 1766 2.269978 GCAAGGCCAGAAGCATGAA 58.730 52.632 5.01 0.00 46.50 2.57
1787 1888 5.239525 AGTGGAGTAAATCACTTTTGCAGAC 59.760 40.000 0.00 0.00 40.91 3.51
1869 1970 4.320494 GGATTTACACTGCAAAGGTGTCAG 60.320 45.833 12.94 0.00 45.23 3.51
1874 1975 1.539827 GCGGATTTACACTGCAAAGGT 59.460 47.619 0.00 0.00 39.19 3.50
1875 1976 1.465689 CGCGGATTTACACTGCAAAGG 60.466 52.381 0.00 0.00 39.31 3.11
1876 1977 1.196808 ACGCGGATTTACACTGCAAAG 59.803 47.619 12.47 0.00 39.31 2.77
1892 1993 0.655733 AAAGGAATATTGGCGACGCG 59.344 50.000 14.61 3.53 0.00 6.01
1943 2044 7.172703 ACAGCAGTTATCCAGTTACAAGTTTAC 59.827 37.037 0.00 0.00 0.00 2.01
2017 2118 9.480053 AAACTGAACAAACAATAATCAATGGAG 57.520 29.630 0.00 0.00 0.00 3.86
2024 2125 7.649306 AGCTGTCAAACTGAACAAACAATAATC 59.351 33.333 0.00 0.00 0.00 1.75
2025 2126 7.491682 AGCTGTCAAACTGAACAAACAATAAT 58.508 30.769 0.00 0.00 0.00 1.28
2026 2127 6.862209 AGCTGTCAAACTGAACAAACAATAA 58.138 32.000 0.00 0.00 0.00 1.40
2027 2128 6.449635 AGCTGTCAAACTGAACAAACAATA 57.550 33.333 0.00 0.00 0.00 1.90
2028 2129 5.329035 AGCTGTCAAACTGAACAAACAAT 57.671 34.783 0.00 0.00 0.00 2.71
2029 2130 4.782019 AGCTGTCAAACTGAACAAACAA 57.218 36.364 0.00 0.00 0.00 2.83
2030 2131 4.941263 ACTAGCTGTCAAACTGAACAAACA 59.059 37.500 0.00 0.00 0.00 2.83
2031 2132 5.485662 ACTAGCTGTCAAACTGAACAAAC 57.514 39.130 0.00 0.00 0.00 2.93
2032 2133 5.414454 ACAACTAGCTGTCAAACTGAACAAA 59.586 36.000 0.00 0.00 0.00 2.83
2033 2134 4.941263 ACAACTAGCTGTCAAACTGAACAA 59.059 37.500 0.00 0.00 0.00 2.83
2034 2135 4.332543 CACAACTAGCTGTCAAACTGAACA 59.667 41.667 0.00 0.00 0.00 3.18
2035 2136 4.260784 CCACAACTAGCTGTCAAACTGAAC 60.261 45.833 0.00 0.00 0.00 3.18
2036 2137 3.876914 CCACAACTAGCTGTCAAACTGAA 59.123 43.478 0.00 0.00 0.00 3.02
2037 2138 3.133901 TCCACAACTAGCTGTCAAACTGA 59.866 43.478 0.00 0.00 0.00 3.41
2038 2139 3.466836 TCCACAACTAGCTGTCAAACTG 58.533 45.455 0.00 0.00 0.00 3.16
2039 2140 3.134804 ACTCCACAACTAGCTGTCAAACT 59.865 43.478 0.00 0.00 0.00 2.66
2040 2141 3.467803 ACTCCACAACTAGCTGTCAAAC 58.532 45.455 0.00 0.00 0.00 2.93
2041 2142 3.838244 ACTCCACAACTAGCTGTCAAA 57.162 42.857 0.00 0.00 0.00 2.69
2042 2143 3.133901 TCAACTCCACAACTAGCTGTCAA 59.866 43.478 0.00 0.00 0.00 3.18
2043 2144 2.698274 TCAACTCCACAACTAGCTGTCA 59.302 45.455 0.00 0.00 0.00 3.58
2049 2170 9.784531 ATATGGATAAATCAACTCCACAACTAG 57.215 33.333 0.00 0.00 41.65 2.57
2190 2311 2.901249 ACCCACCGATAAAACAGATCG 58.099 47.619 0.00 0.00 44.59 3.69
2196 2317 3.083293 TGGCTTAACCCACCGATAAAAC 58.917 45.455 0.00 0.00 37.83 2.43
2203 2324 0.322322 TGTACTGGCTTAACCCACCG 59.678 55.000 0.00 0.00 37.83 4.94
2226 2347 5.023920 CGTGCATGAACAAACTAGCAATAG 58.976 41.667 4.29 0.00 33.37 1.73
2238 2359 1.202639 AGAGTTGGTCGTGCATGAACA 60.203 47.619 22.75 22.75 32.66 3.18
2255 2376 3.862267 GGACTGATTCGATCAACACAGAG 59.138 47.826 11.88 0.00 39.11 3.35
2256 2377 3.511540 AGGACTGATTCGATCAACACAGA 59.488 43.478 11.88 0.00 39.11 3.41
2268 2389 4.065321 ACATTCGATCCAGGACTGATTC 57.935 45.455 0.00 0.00 0.00 2.52
2269 2390 5.614324 TTACATTCGATCCAGGACTGATT 57.386 39.130 0.00 0.00 0.00 2.57
2270 2391 5.605534 CTTTACATTCGATCCAGGACTGAT 58.394 41.667 0.00 0.00 0.00 2.90
2271 2392 4.680708 GCTTTACATTCGATCCAGGACTGA 60.681 45.833 0.00 0.00 0.00 3.41
2272 2393 3.557595 GCTTTACATTCGATCCAGGACTG 59.442 47.826 0.00 0.00 0.00 3.51
2273 2394 3.197766 TGCTTTACATTCGATCCAGGACT 59.802 43.478 0.00 0.00 0.00 3.85
2274 2395 3.531538 TGCTTTACATTCGATCCAGGAC 58.468 45.455 0.00 0.00 0.00 3.85
2275 2396 3.904800 TGCTTTACATTCGATCCAGGA 57.095 42.857 0.00 0.00 0.00 3.86
2298 2419 6.827727 ACTCTCTAAAGACACTGGCTTTTTA 58.172 36.000 15.22 3.56 36.92 1.52
2319 2440 9.408069 CCGTCCAAATTAGTAATATGTCTACTC 57.592 37.037 0.00 0.00 31.98 2.59
2321 2442 8.975439 CACCGTCCAAATTAGTAATATGTCTAC 58.025 37.037 0.00 0.00 0.00 2.59
2343 2464 3.312421 GGTGTGGACATGATTATTCACCG 59.688 47.826 0.00 0.00 35.54 4.94
2358 2479 6.367374 TGTTATAGAATCAAGTGGTGTGGA 57.633 37.500 0.00 0.00 0.00 4.02
2361 2482 6.957631 TGGATGTTATAGAATCAAGTGGTGT 58.042 36.000 0.73 0.00 0.00 4.16
2564 2685 6.156949 ACCTCTATCCATTTAACAAGCTGAGA 59.843 38.462 0.00 0.00 0.00 3.27
2598 2720 7.761704 TGAAGAAACTATTTACTCAGCAGCTAG 59.238 37.037 0.00 0.00 0.00 3.42
2610 2732 7.495934 GCTGGCTGATACTGAAGAAACTATTTA 59.504 37.037 0.00 0.00 0.00 1.40
2660 2782 8.871686 ACAGAGATCAAAAACCACAAAAATAC 57.128 30.769 0.00 0.00 0.00 1.89
2674 2796 9.748708 CAAACTGGAAAAATTACAGAGATCAAA 57.251 29.630 9.24 0.00 36.17 2.69
2676 2798 7.505585 ACCAAACTGGAAAAATTACAGAGATCA 59.494 33.333 9.24 0.00 40.96 2.92
2677 2799 7.886338 ACCAAACTGGAAAAATTACAGAGATC 58.114 34.615 9.24 0.00 40.96 2.75
2690 2812 5.141182 TGTGGCTATAAACCAAACTGGAAA 58.859 37.500 0.00 0.00 40.96 3.13
2696 2818 6.207691 ACATGATGTGGCTATAAACCAAAC 57.792 37.500 0.00 0.00 39.39 2.93
2722 2844 5.955959 ACTGGAAAATAATGGAAACCCTACC 59.044 40.000 0.00 0.00 0.00 3.18
2764 2886 8.190784 CAGTTAGGTGAATTTCAAAAGACTTGT 58.809 33.333 0.00 0.00 0.00 3.16
2774 2896 9.391006 GGATATTACACAGTTAGGTGAATTTCA 57.609 33.333 0.00 0.00 41.32 2.69
2833 2955 7.792374 AACATGTACTGGCTTATCAACTATG 57.208 36.000 0.00 0.00 0.00 2.23
2946 3068 5.789574 ATACCCCAGAATAACTTGGTTGA 57.210 39.130 0.00 0.00 34.36 3.18
2957 3079 8.709308 GCTCTGATATGTATAATACCCCAGAAT 58.291 37.037 0.00 0.00 0.00 2.40
2960 3082 6.507900 CGCTCTGATATGTATAATACCCCAG 58.492 44.000 0.00 0.00 0.00 4.45
3012 3134 0.671781 CTTTCCACCTGGCGAGACAG 60.672 60.000 0.00 0.00 38.21 3.51
3039 3161 4.287067 ACTGGATTGAAACTGCCTAGAAGA 59.713 41.667 0.00 0.00 0.00 2.87
3054 3176 2.935201 GCTTCAGCTCAGTACTGGATTG 59.065 50.000 22.48 16.54 38.21 2.67
3387 3520 7.483307 TCTCAAGGCATTTGAATAACATTAGC 58.517 34.615 4.70 0.00 44.84 3.09
3424 3557 3.500471 GGGAAAACAGGAAAGATGGGAGT 60.500 47.826 0.00 0.00 0.00 3.85
3720 3883 1.768275 CCTTCAAGGCCCCAACTTTTT 59.232 47.619 0.00 0.00 0.00 1.94
3728 3891 0.469144 TTCAACACCTTCAAGGCCCC 60.469 55.000 2.20 0.00 39.63 5.80
3871 4042 8.470002 ACTTAAGATCAAAATCATAAAGCCCAC 58.530 33.333 10.09 0.00 34.07 4.61
3948 4121 3.726557 AAACAGGATGGATCAAGCAGA 57.273 42.857 0.00 0.00 43.62 4.26
4013 4186 6.584185 AATATTTGCCCCGTATTTATCCAC 57.416 37.500 0.00 0.00 0.00 4.02
4383 4557 9.090692 GCTGAAACAAGTATATACTCCGTTAAA 57.909 33.333 21.82 15.33 34.99 1.52
4600 4774 8.341903 TGGCATTCATGTTAATAATAGTGTTCG 58.658 33.333 0.00 0.00 0.00 3.95
4608 4782 5.827797 ACGAGGTGGCATTCATGTTAATAAT 59.172 36.000 0.00 0.00 0.00 1.28
4936 5114 8.908786 TGGATCATATGGAATCTAAGAACAAC 57.091 34.615 2.13 0.00 0.00 3.32
5004 5182 5.105146 TGCAACCTGAAACAACAAGGTAAAT 60.105 36.000 0.00 0.00 31.87 1.40
5149 5327 5.590259 TCCCAAGAAGAATATGTAAGCTTGC 59.410 40.000 9.86 8.72 32.23 4.01
5151 5329 7.201857 GCATTCCCAAGAAGAATATGTAAGCTT 60.202 37.037 3.48 3.48 34.86 3.74
5350 5529 8.494347 CAACAAGTCAAAACAAATGAACTTTGA 58.506 29.630 4.81 0.19 45.96 2.69
5408 5587 4.546674 TGTAGAAGATGATGGTCTAGGCA 58.453 43.478 0.00 0.00 0.00 4.75
5409 5588 4.586841 ACTGTAGAAGATGATGGTCTAGGC 59.413 45.833 0.00 0.00 0.00 3.93
5410 5589 5.508825 GCACTGTAGAAGATGATGGTCTAGG 60.509 48.000 0.00 0.00 0.00 3.02
5411 5590 5.301551 AGCACTGTAGAAGATGATGGTCTAG 59.698 44.000 0.00 0.00 0.00 2.43
5492 5671 6.434596 GTGTGCACACAAGTATTTATGTTGA 58.565 36.000 38.42 0.66 45.75 3.18
5567 5746 6.119536 TGTGAACTTGAACCTCAACTATTGT 58.880 36.000 0.00 0.00 32.21 2.71
5651 5831 9.349713 ACCAAGAAAAGATGAACAATGTAGTAA 57.650 29.630 0.00 0.00 0.00 2.24
6101 6287 5.047566 TCTTCCACCTTTCAGTTTCATCA 57.952 39.130 0.00 0.00 0.00 3.07
6247 6435 2.434359 CCGGAGTGGAAGGAACGC 60.434 66.667 0.00 0.00 42.00 4.84
6281 6469 1.279271 ACCTGTTCGGATCCTCTTTGG 59.721 52.381 10.75 9.07 36.31 3.28
6379 6567 3.313526 CGGGTCTATTTTTCATGCTCTGG 59.686 47.826 0.00 0.00 0.00 3.86
6437 6625 6.016693 TGCAAGTCCGAGTATTTGATCAAAAA 60.017 34.615 23.91 3.45 33.56 1.94
6530 6718 7.750229 ACATTATTGCGATATGTCAGGAATT 57.250 32.000 0.00 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.