AutoCloner

Multiple sequence alignment - TraesCS7A01G108500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7A01G108500	chr7A	100.000	2225	0	0	1	2225	66125425	66123201	0.000000e+00	4109.0
1	TraesCS7A01G108500	chr7A	92.422	805	56	5	64	864	218279453	218278650	0.000000e+00	1144.0
2	TraesCS7A01G108500	chr7A	92.164	804	56	7	62	860	482119934	482120735	0.000000e+00	1129.0
3	TraesCS7A01G108500	chr7A	91.945	807	56	8	62	864	540432736	540433537	0.000000e+00	1122.0
4	TraesCS7A01G108500	chr7A	96.565	262	9	0	1964	2225	90770336	90770075	3.390000e-118	435.0
5	TraesCS7A01G108500	chr7A	96.429	56	1	1	1	56	442984761	442984707	8.460000e-15	91.6
6	TraesCS7A01G108500	chr7A	94.737	57	1	2	1	57	313384910	313384964	1.090000e-13	87.9
7	TraesCS7A01G108500	chr7A	93.103	58	2	2	1	58	453524419	453524474	1.420000e-12	84.2
8	TraesCS7A01G108500	chrUn	99.902	1023	1	0	1203	2225	332695996	332694974	0.000000e+00	1884.0
9	TraesCS7A01G108500	chrUn	99.609	1023	4	0	1203	2225	257349800	257350822	0.000000e+00	1868.0
10	TraesCS7A01G108500	chr3A	96.593	1086	36	1	878	1963	404460058	404458974	0.000000e+00	1799.0
11	TraesCS7A01G108500	chr3A	92.375	800	56	5	69	864	196306051	196306849	0.000000e+00	1134.0
12	TraesCS7A01G108500	chr3A	96.084	664	20	4	1303	1963	537116715	537116055	0.000000e+00	1077.0
13	TraesCS7A01G108500	chr3A	96.707	577	19	0	878	1454	404468436	404467860	0.000000e+00	961.0
14	TraesCS7A01G108500	chr4A	95.421	1092	44	2	878	1963	147977568	147978659	0.000000e+00	1735.0
15	TraesCS7A01G108500	chr4A	95.023	1085	47	4	883	1961	147990856	147991939	0.000000e+00	1698.0
16	TraesCS7A01G108500	chr4A	93.210	810	49	6	62	867	436171844	436171037	0.000000e+00	1186.0
17	TraesCS7A01G108500	chr4A	92.560	793	55	4	72	860	125176074	125176866	0.000000e+00	1134.0
18	TraesCS7A01G108500	chr4A	94.643	56	2	1	1	56	391461070	391461124	3.940000e-13	86.1
19	TraesCS7A01G108500	chr6D	93.407	1092	65	4	878	1963	17866701	17865611	0.000000e+00	1611.0
20	TraesCS7A01G108500	chr5D	92.813	807	51	7	62	864	211154624	211155427	0.000000e+00	1162.0
21	TraesCS7A01G108500	chr5A	92.441	807	55	6	62	864	264228922	264228118	0.000000e+00	1147.0
22	TraesCS7A01G108500	chr5A	95.934	664	23	3	1303	1963	119179933	119179271	0.000000e+00	1074.0
23	TraesCS7A01G108500	chr5A	95.934	664	22	4	1303	1963	119193788	119193127	0.000000e+00	1072.0
24	TraesCS7A01G108500	chr5A	96.364	55	2	0	2	56	276633753	276633699	8.460000e-15	91.6
25	TraesCS7A01G108500	chr4D	92.079	808	56	8	62	864	444511086	444511890	0.000000e+00	1131.0
26	TraesCS7A01G108500	chr6A	96.565	262	9	0	1964	2225	134612536	134612797	3.390000e-118	435.0
27	TraesCS7A01G108500	chr6A	96.565	262	9	0	1964	2225	249727342	249727603	3.390000e-118	435.0
28	TraesCS7A01G108500	chr6A	96.565	262	9	0	1964	2225	550059663	550059402	3.390000e-118	435.0
29	TraesCS7A01G108500	chr6A	96.183	262	10	0	1964	2225	507990451	507990712	1.580000e-116	429.0
30	TraesCS7A01G108500	chr6A	94.643	56	3	0	1	56	115078311	115078366	1.090000e-13	87.9
31	TraesCS7A01G108500	chr1A	96.565	262	9	0	1964	2225	578687900	578687639	3.390000e-118	435.0
32	TraesCS7A01G108500	chr1A	96.538	260	9	0	1964	2223	283285852	283285593	4.390000e-117	431.0
33	TraesCS7A01G108500	chr3D	91.608	286	24	0	878	1163	123146899	123146614	1.600000e-106	396.0
34	TraesCS7A01G108500	chr3D	91.259	286	25	0	878	1163	123152841	123152556	7.450000e-105	390.0
35	TraesCS7A01G108500	chr3D	88.514	296	32	2	1155	1448	77989402	77989697	7.560000e-95	357.0
36	TraesCS7A01G108500	chr2D	91.608	286	24	0	878	1163	198616115	198615830	1.600000e-106	396.0
37	TraesCS7A01G108500	chr2D	90.210	286	28	0	878	1163	198601189	198600904	7.500000e-100	374.0
38	TraesCS7A01G108500	chr2D	94.643	56	2	1	1	56	219985963	219986017	3.940000e-13	86.1
39	TraesCS7A01G108500	chr2A	96.429	56	1	1	1	56	191565628	191565682	8.460000e-15	91.6
40	TraesCS7A01G108500	chr2A	96.364	55	1	1	2	56	382609170	382609223	3.040000e-14	89.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7A01G108500	chr7A	66123201	66125425	2224	True	4109	4109	100.000	1	2225	1	chr7A.!!$R1	2224
1	TraesCS7A01G108500	chr7A	218278650	218279453	803	True	1144	1144	92.422	64	864	1	chr7A.!!$R3	800
2	TraesCS7A01G108500	chr7A	482119934	482120735	801	False	1129	1129	92.164	62	860	1	chr7A.!!$F3	798
3	TraesCS7A01G108500	chr7A	540432736	540433537	801	False	1122	1122	91.945	62	864	1	chr7A.!!$F4	802
4	TraesCS7A01G108500	chrUn	332694974	332695996	1022	True	1884	1884	99.902	1203	2225	1	chrUn.!!$R1	1022
5	TraesCS7A01G108500	chrUn	257349800	257350822	1022	False	1868	1868	99.609	1203	2225	1	chrUn.!!$F1	1022
6	TraesCS7A01G108500	chr3A	404458974	404460058	1084	True	1799	1799	96.593	878	1963	1	chr3A.!!$R1	1085
7	TraesCS7A01G108500	chr3A	196306051	196306849	798	False	1134	1134	92.375	69	864	1	chr3A.!!$F1	795
8	TraesCS7A01G108500	chr3A	537116055	537116715	660	True	1077	1077	96.084	1303	1963	1	chr3A.!!$R3	660
9	TraesCS7A01G108500	chr3A	404467860	404468436	576	True	961	961	96.707	878	1454	1	chr3A.!!$R2	576
10	TraesCS7A01G108500	chr4A	147977568	147978659	1091	False	1735	1735	95.421	878	1963	1	chr4A.!!$F2	1085
11	TraesCS7A01G108500	chr4A	147990856	147991939	1083	False	1698	1698	95.023	883	1961	1	chr4A.!!$F3	1078
12	TraesCS7A01G108500	chr4A	436171037	436171844	807	True	1186	1186	93.210	62	867	1	chr4A.!!$R1	805
13	TraesCS7A01G108500	chr4A	125176074	125176866	792	False	1134	1134	92.560	72	860	1	chr4A.!!$F1	788
14	TraesCS7A01G108500	chr6D	17865611	17866701	1090	True	1611	1611	93.407	878	1963	1	chr6D.!!$R1	1085
15	TraesCS7A01G108500	chr5D	211154624	211155427	803	False	1162	1162	92.813	62	864	1	chr5D.!!$F1	802
16	TraesCS7A01G108500	chr5A	264228118	264228922	804	True	1147	1147	92.441	62	864	1	chr5A.!!$R3	802
17	TraesCS7A01G108500	chr5A	119179271	119179933	662	True	1074	1074	95.934	1303	1963	1	chr5A.!!$R1	660
18	TraesCS7A01G108500	chr5A	119193127	119193788	661	True	1072	1072	95.934	1303	1963	1	chr5A.!!$R2	660
19	TraesCS7A01G108500	chr4D	444511086	444511890	804	False	1131	1131	92.079	62	864	1	chr4D.!!$F1	802

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
70	72	0.108945	GACTTTGCCATGCTTCCTGC	60.109	55.0	0.0	0.0	43.25	4.85	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2155	2174	1.523758	GACAGTGGCTCAAATCCGTT	58.476	50.0	0.0	0.0	0.0	4.44	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
20	21	2.806608	AGCAGGTTCAAACAAGCATG	57.193	45.000	10.17	0.00	34.14	4.06
21	22	1.342174	AGCAGGTTCAAACAAGCATGG	59.658	47.619	10.17	0.00	34.14	3.66
22	23	1.787012	CAGGTTCAAACAAGCATGGC	58.213	50.000	0.00	0.00	0.00	4.40
23	24	1.068895	CAGGTTCAAACAAGCATGGCA	59.931	47.619	0.00	0.00	0.00	4.92
24	25	1.761784	AGGTTCAAACAAGCATGGCAA	59.238	42.857	0.00	0.00	0.00	4.52
25	26	2.170187	AGGTTCAAACAAGCATGGCAAA	59.830	40.909	0.00	0.00	0.00	3.68
26	27	2.941720	GGTTCAAACAAGCATGGCAAAA	59.058	40.909	0.00	0.00	0.00	2.44
27	28	3.376546	GGTTCAAACAAGCATGGCAAAAA	59.623	39.130	0.00	0.00	0.00	1.94
49	50	7.823149	AAAATGCAAAAGATAACAGCATCTC	57.177	32.000	0.00	0.00	44.40	2.75
50	51	6.519679	AATGCAAAAGATAACAGCATCTCA	57.480	33.333	0.00	0.00	44.40	3.27
51	52	5.556355	TGCAAAAGATAACAGCATCTCAG	57.444	39.130	0.00	0.00	34.08	3.35
52	53	5.247862	TGCAAAAGATAACAGCATCTCAGA	58.752	37.500	0.00	0.00	34.08	3.27
53	54	5.122869	TGCAAAAGATAACAGCATCTCAGAC	59.877	40.000	0.00	0.00	34.08	3.51
54	55	5.353678	GCAAAAGATAACAGCATCTCAGACT	59.646	40.000	0.00	0.00	34.08	3.24
55	56	6.128063	GCAAAAGATAACAGCATCTCAGACTT	60.128	38.462	0.00	0.00	34.08	3.01
56	57	7.574592	GCAAAAGATAACAGCATCTCAGACTTT	60.575	37.037	0.00	0.00	34.08	2.66
57	58	6.981762	AAGATAACAGCATCTCAGACTTTG	57.018	37.500	0.00	0.00	34.08	2.77
58	59	4.874966	AGATAACAGCATCTCAGACTTTGC	59.125	41.667	0.00	0.00	28.83	3.68
59	60	1.818642	ACAGCATCTCAGACTTTGCC	58.181	50.000	0.00	0.00	35.71	4.52
60	61	1.072806	ACAGCATCTCAGACTTTGCCA	59.927	47.619	0.00	0.00	35.71	4.92
66	67	2.430465	TCTCAGACTTTGCCATGCTTC	58.570	47.619	0.00	0.00	0.00	3.86
70	72	0.108945	GACTTTGCCATGCTTCCTGC	60.109	55.000	0.00	0.00	43.25	4.85
123	125	6.403866	TTCAACAAAACTGGCAATGATAGT	57.596	33.333	0.00	0.00	0.00	2.12
312	316	6.742559	TGGAGTTAGGGAAGTATTGATACC	57.257	41.667	0.00	0.00	33.79	2.73
332	336	4.327680	ACCCTTGCATTCTTTACAGACTC	58.672	43.478	0.00	0.00	0.00	3.36
346	350	8.540388	TCTTTACAGACTCTACTATTTTGGCAT	58.460	33.333	0.00	0.00	0.00	4.40
380	384	6.284475	TGTTTGCATATGTTTGCTTGTTTC	57.716	33.333	4.29	0.00	43.18	2.78
698	705	3.766051	GCATCCCACCTTTCTTCTTCAAT	59.234	43.478	0.00	0.00	0.00	2.57
745	752	4.740205	GCCTAAGTTTTTGCTTCTTCACAC	59.260	41.667	0.00	0.00	0.00	3.82
860	869	2.239654	CCTCAAATAGTTGCCAGGGAGA	59.760	50.000	0.00	0.00	34.50	3.71
861	870	3.539604	CTCAAATAGTTGCCAGGGAGAG	58.460	50.000	0.00	0.00	34.50	3.20
862	871	2.019984	CAAATAGTTGCCAGGGAGAGC	58.980	52.381	0.00	0.00	0.00	4.09
863	872	1.589414	AATAGTTGCCAGGGAGAGCT	58.411	50.000	0.00	0.00	0.00	4.09
864	873	1.127343	ATAGTTGCCAGGGAGAGCTC	58.873	55.000	5.27	5.27	0.00	4.09
866	875	3.393970	TTGCCAGGGAGAGCTCGG	61.394	66.667	8.37	4.00	0.00	4.63
869	878	2.279073	CCAGGGAGAGCTCGGGTA	59.721	66.667	8.37	0.00	0.00	3.69
870	879	2.128507	CCAGGGAGAGCTCGGGTAC	61.129	68.421	8.37	0.00	0.00	3.34
871	880	1.379977	CAGGGAGAGCTCGGGTACA	60.380	63.158	8.37	0.00	0.00	2.90
872	881	0.970937	CAGGGAGAGCTCGGGTACAA	60.971	60.000	8.37	0.00	0.00	2.41
873	882	0.252103	AGGGAGAGCTCGGGTACAAA	60.252	55.000	8.37	0.00	0.00	2.83
874	883	0.175989	GGGAGAGCTCGGGTACAAAG	59.824	60.000	8.37	0.00	0.00	2.77
875	884	0.896226	GGAGAGCTCGGGTACAAAGT	59.104	55.000	8.37	0.00	0.00	2.66
876	885	2.097825	GGAGAGCTCGGGTACAAAGTA	58.902	52.381	8.37	0.00	0.00	2.24
880	889	1.831736	AGCTCGGGTACAAAGTAGCAT	59.168	47.619	8.41	0.00	32.42	3.79
929	944	0.868177	CAGCACGACACACACGTACA	60.868	55.000	0.00	0.00	42.07	2.90
981	996	1.427819	CGGCTACGGCAACAAATCC	59.572	57.895	0.00	0.00	40.87	3.01
986	1001	0.250945	TACGGCAACAAATCCAGGCA	60.251	50.000	0.00	0.00	0.00	4.75
996	1011	1.210204	AATCCAGGCAGCAAGGAGGA	61.210	55.000	10.47	2.71	34.40	3.71
1039	1054	2.338984	GAGGTCGTGGACGTGCTT	59.661	61.111	8.99	0.00	40.80	3.91
1201	1216	2.621407	GCTCCTGGTCATCATCCCAAAA	60.621	50.000	0.00	0.00	0.00	2.44
2155	2174	1.218047	CGCGGGGACTTGATCTTCA	59.782	57.895	0.00	0.00	0.00	3.02

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	2.557924	CCATGCTTGTTTGAACCTGCTA	59.442	45.455	0.00	0.00	0.00	3.49
1	2	1.342174	CCATGCTTGTTTGAACCTGCT	59.658	47.619	0.00	0.00	0.00	4.24
2	3	1.787012	CCATGCTTGTTTGAACCTGC	58.213	50.000	0.00	0.00	0.00	4.85
3	4	1.068895	TGCCATGCTTGTTTGAACCTG	59.931	47.619	0.00	0.00	0.00	4.00
4	5	1.412079	TGCCATGCTTGTTTGAACCT	58.588	45.000	0.00	0.00	0.00	3.50
5	6	2.237393	TTGCCATGCTTGTTTGAACC	57.763	45.000	0.00	0.00	0.00	3.62
6	7	4.612932	TTTTTGCCATGCTTGTTTGAAC	57.387	36.364	0.00	0.00	0.00	3.18
24	25	7.874016	TGAGATGCTGTTATCTTTTGCATTTTT	59.126	29.630	0.00	0.00	43.28	1.94
25	26	7.380536	TGAGATGCTGTTATCTTTTGCATTTT	58.619	30.769	0.00	0.00	43.28	1.82
26	27	6.927416	TGAGATGCTGTTATCTTTTGCATTT	58.073	32.000	0.00	0.00	43.28	2.32
27	28	6.376299	TCTGAGATGCTGTTATCTTTTGCATT	59.624	34.615	0.00	0.00	43.28	3.56
28	29	5.884232	TCTGAGATGCTGTTATCTTTTGCAT	59.116	36.000	0.00	0.00	45.48	3.96
29	30	5.122869	GTCTGAGATGCTGTTATCTTTTGCA	59.877	40.000	0.00	0.00	37.53	4.08
30	31	5.353678	AGTCTGAGATGCTGTTATCTTTTGC	59.646	40.000	0.00	0.00	37.53	3.68
31	32	6.981762	AGTCTGAGATGCTGTTATCTTTTG	57.018	37.500	0.00	0.00	37.53	2.44
32	33	7.574592	GCAAAGTCTGAGATGCTGTTATCTTTT	60.575	37.037	0.00	0.00	37.53	2.27
33	34	6.128063	GCAAAGTCTGAGATGCTGTTATCTTT	60.128	38.462	0.00	0.00	37.53	2.52
34	35	5.353678	GCAAAGTCTGAGATGCTGTTATCTT	59.646	40.000	0.00	0.00	37.53	2.40
35	36	4.874966	GCAAAGTCTGAGATGCTGTTATCT	59.125	41.667	0.00	0.00	40.02	1.98
36	37	4.034975	GGCAAAGTCTGAGATGCTGTTATC	59.965	45.833	6.50	0.00	38.79	1.75
37	38	3.944015	GGCAAAGTCTGAGATGCTGTTAT	59.056	43.478	6.50	0.00	38.79	1.89
38	39	3.244526	TGGCAAAGTCTGAGATGCTGTTA	60.245	43.478	6.50	0.00	38.79	2.41
39	40	2.157738	GGCAAAGTCTGAGATGCTGTT	58.842	47.619	6.50	0.00	38.79	3.16
40	41	1.072806	TGGCAAAGTCTGAGATGCTGT	59.927	47.619	6.50	0.00	38.79	4.40
41	42	1.817357	TGGCAAAGTCTGAGATGCTG	58.183	50.000	6.50	0.00	38.79	4.41
42	43	2.366533	CATGGCAAAGTCTGAGATGCT	58.633	47.619	6.50	0.00	38.79	3.79
43	44	1.202268	GCATGGCAAAGTCTGAGATGC	60.202	52.381	0.00	0.00	35.35	3.91
44	45	2.366533	AGCATGGCAAAGTCTGAGATG	58.633	47.619	0.00	0.00	0.00	2.90
45	46	2.803030	AGCATGGCAAAGTCTGAGAT	57.197	45.000	0.00	0.00	0.00	2.75
46	47	2.430465	GAAGCATGGCAAAGTCTGAGA	58.570	47.619	0.00	0.00	0.00	3.27
47	48	1.471684	GGAAGCATGGCAAAGTCTGAG	59.528	52.381	0.00	0.00	0.00	3.35
48	49	1.074405	AGGAAGCATGGCAAAGTCTGA	59.926	47.619	0.00	0.00	0.00	3.27
49	50	1.201647	CAGGAAGCATGGCAAAGTCTG	59.798	52.381	0.00	0.00	0.00	3.51
50	51	1.542492	CAGGAAGCATGGCAAAGTCT	58.458	50.000	0.00	0.00	0.00	3.24
51	52	0.108945	GCAGGAAGCATGGCAAAGTC	60.109	55.000	0.00	0.00	44.79	3.01
52	53	1.969862	GCAGGAAGCATGGCAAAGT	59.030	52.632	0.00	0.00	44.79	2.66
53	54	4.904466	GCAGGAAGCATGGCAAAG	57.096	55.556	0.00	0.00	44.79	2.77
66	67	9.754382	ATGCAAAACATTATTCTAAATAGCAGG	57.246	29.630	0.00	0.00	34.40	4.85
105	107	5.346822	GCAAAGACTATCATTGCCAGTTTTG	59.653	40.000	7.38	13.27	43.05	2.44
123	125	4.268797	TGCAAAATAAGCATGGCAAAGA	57.731	36.364	0.00	0.00	37.02	2.52
162	164	7.404671	ACAGTGGTAAACTTTCTGTTTTCAT	57.595	32.000	0.00	0.00	45.69	2.57
181	184	5.452078	TCTAGGGAATTTTTGCAACAGTG	57.548	39.130	0.00	0.00	0.00	3.66
182	185	6.478512	TTTCTAGGGAATTTTTGCAACAGT	57.521	33.333	0.00	0.00	0.00	3.55
279	283	7.170393	ACTTCCCTAACTCCAAAAATTATGC	57.830	36.000	0.00	0.00	0.00	3.14
312	316	6.402222	AGTAGAGTCTGTAAAGAATGCAAGG	58.598	40.000	1.86	0.00	0.00	3.61
332	336	9.616634	CATAACAGCAATATGCCAAAATAGTAG	57.383	33.333	0.00	0.00	46.52	2.57
346	350	9.085250	CAAACATATGCAAACATAACAGCAATA	57.915	29.630	1.58	0.00	41.99	1.90
698	705	7.086376	GCTCAACCGATACTAACCGATAATTA	58.914	38.462	0.00	0.00	0.00	1.40
745	752	1.162698	CCCAAGGATAGCATGCATCG	58.837	55.000	21.98	8.14	0.00	3.84
860	869	1.263356	TGCTACTTTGTACCCGAGCT	58.737	50.000	0.00	0.00	0.00	4.09
861	870	2.202566	GATGCTACTTTGTACCCGAGC	58.797	52.381	0.00	0.00	0.00	5.03
862	871	3.119101	ACTGATGCTACTTTGTACCCGAG	60.119	47.826	0.00	0.00	0.00	4.63
863	872	2.829720	ACTGATGCTACTTTGTACCCGA	59.170	45.455	0.00	0.00	0.00	5.14
864	873	2.930040	CACTGATGCTACTTTGTACCCG	59.070	50.000	0.00	0.00	0.00	5.28
880	889	1.725641	CCGATGCTACTTTGCACTGA	58.274	50.000	0.00	0.00	46.33	3.41
929	944	1.749638	CCCGAGCTCTCCTGTACGT	60.750	63.158	12.85	0.00	0.00	3.57
981	996	1.845627	TTCCTCCTCCTTGCTGCCTG	61.846	60.000	0.00	0.00	0.00	4.85
986	1001	0.915364	GTCCATTCCTCCTCCTTGCT	59.085	55.000	0.00	0.00	0.00	3.91
996	1011	3.390521	TGAGCCGCGTCCATTCCT	61.391	61.111	4.92	0.00	0.00	3.36
2155	2174	1.523758	GACAGTGGCTCAAATCCGTT	58.476	50.000	0.00	0.00	0.00	4.44

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.