Multiple sequence alignment - TraesCS7A01G107300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G107300 chr7A 100.000 6405 0 0 2175 8579 64930544 64936948 0.000000e+00 11828.0
1 TraesCS7A01G107300 chr7A 98.143 2746 33 4 4212 6956 318405299 318402571 0.000000e+00 4772.0
2 TraesCS7A01G107300 chr7A 100.000 1524 0 0 1 1524 64928370 64929893 0.000000e+00 2815.0
3 TraesCS7A01G107300 chr1A 99.237 2752 18 3 4207 6956 561760712 561763462 0.000000e+00 4963.0
4 TraesCS7A01G107300 chr4B 99.199 2747 18 4 4209 6954 553915626 553912883 0.000000e+00 4948.0
5 TraesCS7A01G107300 chr4B 89.373 734 70 7 4234 4965 286078695 286079422 0.000000e+00 917.0
6 TraesCS7A01G107300 chr3B 99.053 2745 25 1 4212 6956 40978985 40976242 0.000000e+00 4924.0
7 TraesCS7A01G107300 chr3B 97.722 2766 35 5 4195 6958 340398671 340401410 0.000000e+00 4734.0
8 TraesCS7A01G107300 chr5A 98.320 2381 37 3 4212 6590 593733527 593731148 0.000000e+00 4172.0
9 TraesCS7A01G107300 chr5A 98.498 1132 10 4 5316 6445 230820203 230821329 0.000000e+00 1989.0
10 TraesCS7A01G107300 chr5A 99.397 829 5 0 6130 6958 230849887 230850715 0.000000e+00 1504.0
11 TraesCS7A01G107300 chr5A 99.030 825 4 2 4591 5415 230819422 230820242 0.000000e+00 1476.0
12 TraesCS7A01G107300 chr5A 98.930 374 4 0 6583 6956 593717914 593717541 0.000000e+00 669.0
13 TraesCS7A01G107300 chr5A 95.238 105 5 0 717 821 431742929 431743033 5.330000e-37 167.0
14 TraesCS7A01G107300 chr2A 98.960 2307 21 3 4656 6959 379112146 379114452 0.000000e+00 4124.0
15 TraesCS7A01G107300 chr2A 98.238 454 7 1 4209 4662 379094956 379095408 0.000000e+00 793.0
16 TraesCS7A01G107300 chr2A 96.226 106 4 0 717 822 66306087 66305982 3.180000e-39 174.0
17 TraesCS7A01G107300 chr7B 99.065 1498 13 1 5460 6956 659429578 659431075 0.000000e+00 2687.0
18 TraesCS7A01G107300 chr7B 99.089 1207 11 0 4209 5415 659428373 659429579 0.000000e+00 2169.0
19 TraesCS7A01G107300 chr7B 90.960 1416 72 20 2175 3549 3330023 3331423 0.000000e+00 1855.0
20 TraesCS7A01G107300 chr7B 89.411 1001 58 13 6959 7939 3332194 3333166 0.000000e+00 1218.0
21 TraesCS7A01G107300 chr7B 88.376 585 30 12 868 1451 3329412 3329959 0.000000e+00 669.0
22 TraesCS7A01G107300 chr7B 86.478 636 27 14 868 1502 3176363 3176940 2.020000e-180 643.0
23 TraesCS7A01G107300 chr7B 92.556 403 20 4 7910 8303 3333205 3333606 3.470000e-158 569.0
24 TraesCS7A01G107300 chr7B 92.775 346 16 4 3566 3907 3331476 3331816 7.740000e-135 492.0
25 TraesCS7A01G107300 chr7B 94.239 243 12 1 3970 4210 3331949 3332191 3.780000e-98 370.0
26 TraesCS7A01G107300 chr7B 81.124 249 42 4 3552 3799 3178891 3179135 2.440000e-45 195.0
27 TraesCS7A01G107300 chr7B 83.575 207 33 1 3327 3532 3178621 3178827 8.790000e-45 193.0
28 TraesCS7A01G107300 chr7B 88.462 156 14 3 2303 2455 3177216 3177370 1.470000e-42 185.0
29 TraesCS7A01G107300 chr7B 94.937 79 3 1 628 706 3176149 3176226 1.170000e-23 122.0
30 TraesCS7A01G107300 chr7D 92.934 1387 68 16 2175 3551 60693522 60694888 0.000000e+00 1991.0
31 TraesCS7A01G107300 chr7D 92.169 996 60 13 6956 7938 60695594 60696584 0.000000e+00 1391.0
32 TraesCS7A01G107300 chr7D 95.075 670 28 4 3546 4212 60694929 60695596 0.000000e+00 1050.0
33 TraesCS7A01G107300 chr7D 92.878 674 42 6 7910 8579 60696624 60697295 0.000000e+00 974.0
34 TraesCS7A01G107300 chr7D 90.647 695 38 10 823 1516 60692296 60692964 0.000000e+00 898.0
35 TraesCS7A01G107300 chr7D 96.310 542 19 1 1 542 629524649 629524109 0.000000e+00 889.0
36 TraesCS7A01G107300 chr7D 87.425 167 14 6 545 706 60692113 60692277 1.470000e-42 185.0
37 TraesCS7A01G107300 chr7D 93.750 48 3 0 626 673 496171834 496171787 1.190000e-08 73.1
38 TraesCS7A01G107300 chr5B 89.407 944 53 10 2176 3081 345179520 345178586 0.000000e+00 1146.0
39 TraesCS7A01G107300 chr5B 96.089 537 20 1 7 543 81209534 81208999 0.000000e+00 874.0
40 TraesCS7A01G107300 chr5B 78.326 466 67 32 11 468 674748565 674748126 3.950000e-68 270.0
41 TraesCS7A01G107300 chr2B 96.709 547 15 3 1 547 449108599 449109142 0.000000e+00 907.0
42 TraesCS7A01G107300 chr4A 85.498 462 41 21 11 468 583149370 583149809 7.850000e-125 459.0
43 TraesCS7A01G107300 chr4A 88.235 102 11 1 717 818 276908929 276909029 4.210000e-23 121.0
44 TraesCS7A01G107300 chr2D 97.087 103 2 1 717 819 275001778 275001879 1.140000e-38 172.0
45 TraesCS7A01G107300 chr4D 95.146 103 4 1 717 819 37607582 37607683 2.480000e-35 161.0
46 TraesCS7A01G107300 chr3A 78.313 249 43 10 53 293 1698142 1697897 5.360000e-32 150.0
47 TraesCS7A01G107300 chr3A 93.204 103 6 1 717 819 638199474 638199373 5.360000e-32 150.0
48 TraesCS7A01G107300 chr1B 84.416 77 6 6 86 162 478477594 478477524 4.300000e-08 71.3
49 TraesCS7A01G107300 chr3D 97.143 35 1 0 2883 2917 250458672 250458638 9.300000e-05 60.2
50 TraesCS7A01G107300 chr6A 100.000 31 0 0 2883 2913 29182138 29182108 3.340000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G107300 chr7A 64928370 64936948 8578 False 7321.500000 11828 100.000000 1 8579 2 chr7A.!!$F1 8578
1 TraesCS7A01G107300 chr7A 318402571 318405299 2728 True 4772.000000 4772 98.143000 4212 6956 1 chr7A.!!$R1 2744
2 TraesCS7A01G107300 chr1A 561760712 561763462 2750 False 4963.000000 4963 99.237000 4207 6956 1 chr1A.!!$F1 2749
3 TraesCS7A01G107300 chr4B 553912883 553915626 2743 True 4948.000000 4948 99.199000 4209 6954 1 chr4B.!!$R1 2745
4 TraesCS7A01G107300 chr4B 286078695 286079422 727 False 917.000000 917 89.373000 4234 4965 1 chr4B.!!$F1 731
5 TraesCS7A01G107300 chr3B 40976242 40978985 2743 True 4924.000000 4924 99.053000 4212 6956 1 chr3B.!!$R1 2744
6 TraesCS7A01G107300 chr3B 340398671 340401410 2739 False 4734.000000 4734 97.722000 4195 6958 1 chr3B.!!$F1 2763
7 TraesCS7A01G107300 chr5A 593731148 593733527 2379 True 4172.000000 4172 98.320000 4212 6590 1 chr5A.!!$R2 2378
8 TraesCS7A01G107300 chr5A 230819422 230821329 1907 False 1732.500000 1989 98.764000 4591 6445 2 chr5A.!!$F3 1854
9 TraesCS7A01G107300 chr5A 230849887 230850715 828 False 1504.000000 1504 99.397000 6130 6958 1 chr5A.!!$F1 828
10 TraesCS7A01G107300 chr2A 379112146 379114452 2306 False 4124.000000 4124 98.960000 4656 6959 1 chr2A.!!$F2 2303
11 TraesCS7A01G107300 chr7B 659428373 659431075 2702 False 2428.000000 2687 99.077000 4209 6956 2 chr7B.!!$F3 2747
12 TraesCS7A01G107300 chr7B 3329412 3333606 4194 False 862.166667 1855 91.386167 868 8303 6 chr7B.!!$F2 7435
13 TraesCS7A01G107300 chr7B 3176149 3179135 2986 False 267.600000 643 86.915200 628 3799 5 chr7B.!!$F1 3171
14 TraesCS7A01G107300 chr7D 60692113 60697295 5182 False 1081.500000 1991 91.854667 545 8579 6 chr7D.!!$F1 8034
15 TraesCS7A01G107300 chr7D 629524109 629524649 540 True 889.000000 889 96.310000 1 542 1 chr7D.!!$R2 541
16 TraesCS7A01G107300 chr5B 345178586 345179520 934 True 1146.000000 1146 89.407000 2176 3081 1 chr5B.!!$R2 905
17 TraesCS7A01G107300 chr5B 81208999 81209534 535 True 874.000000 874 96.089000 7 543 1 chr5B.!!$R1 536
18 TraesCS7A01G107300 chr2B 449108599 449109142 543 False 907.000000 907 96.709000 1 547 1 chr2B.!!$F1 546

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
764 769 0.109226 CGGGTGGACTCTCTTTCGTC 60.109 60.000 0.00 0.00 0.00 4.20 F
2402 2519 0.108898 TAATGGCCGTTGTGCAATGC 60.109 50.000 20.91 0.00 0.00 3.56 F
3143 4264 1.062587 CGCGTGGAATTGATCACCTTC 59.937 52.381 0.00 1.58 0.00 3.46 F
3575 4747 2.679355 TCATGGTTTTCACGCTTTCG 57.321 45.000 0.00 0.00 42.43 3.46 F
3872 5047 2.687935 TGGTTTTGTTGCTCTCCAGTTC 59.312 45.455 0.00 0.00 0.00 3.01 F
4171 5428 3.244665 CCAATCACCTGCAGCCTATATGA 60.245 47.826 8.66 4.94 0.00 2.15 F
5560 6924 8.168058 ACATACTTGGTTTTCTTTGTACCCTAT 58.832 33.333 0.00 0.00 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2497 3492 4.442375 AGAACCGTGACTAAGACTGATG 57.558 45.455 0.00 0.00 0.00 3.07 R
4143 5400 0.325933 CTGCAGGTGATTGGTCCAGA 59.674 55.000 5.57 0.00 0.00 3.86 R
5560 6924 1.833630 AGATGAAGATGCGAGTCCCAA 59.166 47.619 0.00 0.00 0.00 4.12 R
5641 7005 3.990959 AGAGAACAAGGGAGGTTCATC 57.009 47.619 7.87 3.36 45.45 2.92 R
5908 7273 4.884164 GTCATAATCAGGGGAAAACAGGAG 59.116 45.833 0.00 0.00 0.00 3.69 R
6609 8041 1.336125 AGAAGCTTGCTGCAAGTTGAC 59.664 47.619 34.88 26.74 42.77 3.18 R
7589 9033 0.107654 CTTGAGATTGGGACCGGGAC 60.108 60.000 6.32 0.00 0.00 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 88 9.638239 ATGCGTTGAACAATTTATAAAACTCAT 57.362 25.926 1.21 0.00 0.00 2.90
88 89 9.469807 TGCGTTGAACAATTTATAAAACTCATT 57.530 25.926 1.21 0.00 0.00 2.57
89 90 9.726034 GCGTTGAACAATTTATAAAACTCATTG 57.274 29.630 1.21 4.67 0.00 2.82
175 176 8.825667 ACACTTAACAAATTCAAAAACACAGT 57.174 26.923 0.00 0.00 0.00 3.55
176 177 8.707839 ACACTTAACAAATTCAAAAACACAGTG 58.292 29.630 0.00 0.00 33.24 3.66
177 178 8.920665 CACTTAACAAATTCAAAAACACAGTGA 58.079 29.630 7.81 0.00 0.00 3.41
178 179 9.651913 ACTTAACAAATTCAAAAACACAGTGAT 57.348 25.926 7.81 0.00 0.00 3.06
209 210 7.719538 GTTCATTGAACAATTTCCAACATACG 58.280 34.615 21.75 0.00 41.62 3.06
210 211 7.208225 TCATTGAACAATTTCCAACATACGA 57.792 32.000 0.00 0.00 0.00 3.43
211 212 7.825681 TCATTGAACAATTTCCAACATACGAT 58.174 30.769 0.00 0.00 0.00 3.73
212 213 7.754475 TCATTGAACAATTTCCAACATACGATG 59.246 33.333 0.00 0.00 0.00 3.84
213 214 6.809630 TGAACAATTTCCAACATACGATGA 57.190 33.333 0.00 0.00 0.00 2.92
214 215 7.208225 TGAACAATTTCCAACATACGATGAA 57.792 32.000 0.00 0.00 0.00 2.57
215 216 7.081349 TGAACAATTTCCAACATACGATGAAC 58.919 34.615 0.00 0.00 0.00 3.18
216 217 6.567687 ACAATTTCCAACATACGATGAACA 57.432 33.333 0.00 0.00 0.00 3.18
217 218 6.976088 ACAATTTCCAACATACGATGAACAA 58.024 32.000 0.00 0.00 0.00 2.83
218 219 7.601856 ACAATTTCCAACATACGATGAACAAT 58.398 30.769 0.00 0.00 0.00 2.71
219 220 8.087750 ACAATTTCCAACATACGATGAACAATT 58.912 29.630 0.00 0.00 0.00 2.32
220 221 8.924691 CAATTTCCAACATACGATGAACAATTT 58.075 29.630 0.00 0.00 0.00 1.82
221 222 9.487790 AATTTCCAACATACGATGAACAATTTT 57.512 25.926 0.00 0.00 0.00 1.82
233 234 9.970395 ACGATGAACAATTTTATAATGCATGAT 57.030 25.926 0.00 0.00 0.00 2.45
261 262 9.843334 AACTTTTGTAGAAATAAAACGTGAACA 57.157 25.926 0.00 0.00 0.00 3.18
262 263 9.281075 ACTTTTGTAGAAATAAAACGTGAACAC 57.719 29.630 0.00 0.00 0.00 3.32
263 264 9.498307 CTTTTGTAGAAATAAAACGTGAACACT 57.502 29.630 0.00 0.00 0.00 3.55
264 265 9.843334 TTTTGTAGAAATAAAACGTGAACACTT 57.157 25.926 0.00 0.00 0.00 3.16
265 266 9.493206 TTTGTAGAAATAAAACGTGAACACTTC 57.507 29.630 0.00 0.00 0.00 3.01
266 267 7.632721 TGTAGAAATAAAACGTGAACACTTCC 58.367 34.615 0.00 0.00 0.00 3.46
267 268 6.937436 AGAAATAAAACGTGAACACTTCCT 57.063 33.333 0.00 0.00 0.00 3.36
268 269 7.329588 AGAAATAAAACGTGAACACTTCCTT 57.670 32.000 0.00 0.00 0.00 3.36
269 270 8.441312 AGAAATAAAACGTGAACACTTCCTTA 57.559 30.769 0.00 0.00 0.00 2.69
270 271 8.895737 AGAAATAAAACGTGAACACTTCCTTAA 58.104 29.630 0.00 0.00 0.00 1.85
271 272 9.673454 GAAATAAAACGTGAACACTTCCTTAAT 57.327 29.630 0.00 0.00 0.00 1.40
272 273 9.458374 AAATAAAACGTGAACACTTCCTTAATG 57.542 29.630 0.00 0.00 0.00 1.90
273 274 6.445357 AAAACGTGAACACTTCCTTAATGT 57.555 33.333 0.00 0.00 0.00 2.71
274 275 7.556733 AAAACGTGAACACTTCCTTAATGTA 57.443 32.000 0.00 0.00 0.00 2.29
275 276 7.739498 AAACGTGAACACTTCCTTAATGTAT 57.261 32.000 0.00 0.00 0.00 2.29
276 277 6.721571 ACGTGAACACTTCCTTAATGTATG 57.278 37.500 3.51 0.00 0.00 2.39
277 278 6.460781 ACGTGAACACTTCCTTAATGTATGA 58.539 36.000 3.51 0.00 0.00 2.15
278 279 7.103641 ACGTGAACACTTCCTTAATGTATGAT 58.896 34.615 3.51 0.00 0.00 2.45
279 280 7.064609 ACGTGAACACTTCCTTAATGTATGATG 59.935 37.037 3.51 0.00 0.00 3.07
280 281 7.277760 CGTGAACACTTCCTTAATGTATGATGA 59.722 37.037 3.51 0.00 0.00 2.92
281 282 8.946085 GTGAACACTTCCTTAATGTATGATGAA 58.054 33.333 0.00 0.00 0.00 2.57
282 283 8.946085 TGAACACTTCCTTAATGTATGATGAAC 58.054 33.333 0.00 0.00 0.00 3.18
283 284 8.862325 AACACTTCCTTAATGTATGATGAACA 57.138 30.769 0.00 0.00 0.00 3.18
284 285 9.466497 AACACTTCCTTAATGTATGATGAACAT 57.534 29.630 0.00 0.00 42.39 2.71
285 286 9.466497 ACACTTCCTTAATGTATGATGAACATT 57.534 29.630 6.67 6.67 46.49 2.71
420 421 9.454859 AAGAAACAGAAAGAGAAAGAGAAAAGA 57.545 29.630 0.00 0.00 0.00 2.52
421 422 9.108284 AGAAACAGAAAGAGAAAGAGAAAAGAG 57.892 33.333 0.00 0.00 0.00 2.85
422 423 9.103861 GAAACAGAAAGAGAAAGAGAAAAGAGA 57.896 33.333 0.00 0.00 0.00 3.10
423 424 9.454859 AAACAGAAAGAGAAAGAGAAAAGAGAA 57.545 29.630 0.00 0.00 0.00 2.87
424 425 8.661352 ACAGAAAGAGAAAGAGAAAAGAGAAG 57.339 34.615 0.00 0.00 0.00 2.85
425 426 8.482128 ACAGAAAGAGAAAGAGAAAAGAGAAGA 58.518 33.333 0.00 0.00 0.00 2.87
426 427 9.323985 CAGAAAGAGAAAGAGAAAAGAGAAGAA 57.676 33.333 0.00 0.00 0.00 2.52
427 428 9.898152 AGAAAGAGAAAGAGAAAAGAGAAGAAA 57.102 29.630 0.00 0.00 0.00 2.52
430 431 9.454859 AAGAGAAAGAGAAAAGAGAAGAAAACA 57.545 29.630 0.00 0.00 0.00 2.83
431 432 9.108284 AGAGAAAGAGAAAAGAGAAGAAAACAG 57.892 33.333 0.00 0.00 0.00 3.16
432 433 7.702386 AGAAAGAGAAAAGAGAAGAAAACAGC 58.298 34.615 0.00 0.00 0.00 4.40
433 434 5.665381 AGAGAAAAGAGAAGAAAACAGCG 57.335 39.130 0.00 0.00 0.00 5.18
434 435 5.360591 AGAGAAAAGAGAAGAAAACAGCGA 58.639 37.500 0.00 0.00 0.00 4.93
435 436 5.817816 AGAGAAAAGAGAAGAAAACAGCGAA 59.182 36.000 0.00 0.00 0.00 4.70
436 437 6.018343 AGAGAAAAGAGAAGAAAACAGCGAAG 60.018 38.462 0.00 0.00 0.00 3.79
454 455 3.568093 GCAACTGCGAAACAACCAT 57.432 47.368 0.00 0.00 0.00 3.55
455 456 1.130955 GCAACTGCGAAACAACCATG 58.869 50.000 0.00 0.00 0.00 3.66
456 457 1.769733 CAACTGCGAAACAACCATGG 58.230 50.000 11.19 11.19 0.00 3.66
457 458 0.673437 AACTGCGAAACAACCATGGG 59.327 50.000 18.09 0.85 0.00 4.00
458 459 1.080569 CTGCGAAACAACCATGGGC 60.081 57.895 18.09 8.36 0.00 5.36
459 460 2.261361 GCGAAACAACCATGGGCC 59.739 61.111 18.09 0.00 0.00 5.80
460 461 2.566010 CGAAACAACCATGGGCCG 59.434 61.111 18.09 6.22 0.00 6.13
461 462 2.969827 GAAACAACCATGGGCCGG 59.030 61.111 18.09 0.00 0.00 6.13
462 463 3.295304 GAAACAACCATGGGCCGGC 62.295 63.158 21.18 21.18 0.00 6.13
478 479 4.404654 GCCCAAAAGCTGGCGTCG 62.405 66.667 0.00 0.00 44.90 5.12
479 480 4.404654 CCCAAAAGCTGGCGTCGC 62.405 66.667 9.22 9.22 44.90 5.19
480 481 4.741781 CCAAAAGCTGGCGTCGCG 62.742 66.667 11.75 0.00 38.76 5.87
481 482 3.711842 CAAAAGCTGGCGTCGCGA 61.712 61.111 3.71 3.71 0.00 5.87
482 483 3.414700 AAAAGCTGGCGTCGCGAG 61.415 61.111 23.11 23.11 37.44 5.03
512 513 3.777925 CGAAGCCACGCCGTTCTG 61.778 66.667 0.00 0.00 0.00 3.02
513 514 2.357034 GAAGCCACGCCGTTCTGA 60.357 61.111 0.00 0.00 0.00 3.27
514 515 2.665185 AAGCCACGCCGTTCTGAC 60.665 61.111 0.00 0.00 0.00 3.51
523 524 3.138375 CGTTCTGACGCACACGAG 58.862 61.111 0.00 0.00 43.03 4.18
524 525 2.846918 GTTCTGACGCACACGAGC 59.153 61.111 0.00 0.00 43.93 5.03
533 534 3.858040 GCACACGAGCGTCAAATAG 57.142 52.632 0.00 0.00 0.00 1.73
534 535 0.370273 GCACACGAGCGTCAAATAGG 59.630 55.000 0.00 0.00 0.00 2.57
535 536 0.999406 CACACGAGCGTCAAATAGGG 59.001 55.000 0.00 0.00 0.00 3.53
536 537 0.892755 ACACGAGCGTCAAATAGGGA 59.107 50.000 0.00 0.00 0.00 4.20
537 538 1.480954 ACACGAGCGTCAAATAGGGAT 59.519 47.619 0.00 0.00 0.00 3.85
538 539 2.128035 CACGAGCGTCAAATAGGGATC 58.872 52.381 0.00 0.00 0.00 3.36
539 540 1.269102 ACGAGCGTCAAATAGGGATCG 60.269 52.381 0.00 0.00 35.21 3.69
540 541 1.140816 GAGCGTCAAATAGGGATCGC 58.859 55.000 0.54 0.54 43.16 4.58
541 542 0.249911 AGCGTCAAATAGGGATCGCC 60.250 55.000 6.09 0.00 43.73 5.54
542 543 0.531974 GCGTCAAATAGGGATCGCCA 60.532 55.000 6.09 0.00 38.16 5.69
543 544 1.502231 CGTCAAATAGGGATCGCCAG 58.498 55.000 6.09 0.00 35.15 4.85
559 560 1.081641 CAGCTGTTTTGCGCCTCTG 60.082 57.895 4.18 0.00 38.13 3.35
572 573 0.179034 GCCTCTGTCAGCCTATTGGG 60.179 60.000 0.00 0.00 38.36 4.12
724 729 3.420839 AAAATAAATCGAAGCTGGCCG 57.579 42.857 0.00 0.00 0.00 6.13
725 730 1.308998 AATAAATCGAAGCTGGCCGG 58.691 50.000 7.41 7.41 0.00 6.13
726 731 1.166531 ATAAATCGAAGCTGGCCGGC 61.167 55.000 30.15 30.15 0.00 6.13
727 732 2.529454 TAAATCGAAGCTGGCCGGCA 62.529 55.000 37.26 18.34 34.17 5.69
728 733 3.704231 AATCGAAGCTGGCCGGCAT 62.704 57.895 37.26 27.81 34.17 4.40
731 736 3.064324 GAAGCTGGCCGGCATGTT 61.064 61.111 37.26 23.51 34.17 2.71
732 737 2.601367 AAGCTGGCCGGCATGTTT 60.601 55.556 37.26 20.58 34.17 2.83
733 738 2.824071 GAAGCTGGCCGGCATGTTTG 62.824 60.000 37.26 11.71 34.17 2.93
738 743 2.800736 GCCGGCATGTTTGGCTAG 59.199 61.111 24.80 0.00 45.85 3.42
739 744 2.774799 GCCGGCATGTTTGGCTAGG 61.775 63.158 24.80 0.00 45.85 3.02
740 745 1.378514 CCGGCATGTTTGGCTAGGT 60.379 57.895 0.00 0.00 45.85 3.08
741 746 1.376609 CCGGCATGTTTGGCTAGGTC 61.377 60.000 0.00 0.00 45.85 3.85
742 747 0.676466 CGGCATGTTTGGCTAGGTCA 60.676 55.000 0.00 0.00 45.85 4.02
751 756 4.162690 GCTAGGTCAGCCGGGTGG 62.163 72.222 31.91 17.20 45.23 4.61
752 757 2.363795 CTAGGTCAGCCGGGTGGA 60.364 66.667 31.91 16.70 40.50 4.02
753 758 2.682494 TAGGTCAGCCGGGTGGAC 60.682 66.667 31.91 25.51 40.50 4.02
754 759 3.233919 TAGGTCAGCCGGGTGGACT 62.234 63.158 31.91 28.53 40.50 3.85
755 760 4.083862 GGTCAGCCGGGTGGACTC 62.084 72.222 31.91 19.00 37.49 3.36
756 761 2.997897 GTCAGCCGGGTGGACTCT 60.998 66.667 31.91 1.13 37.49 3.24
757 762 2.680352 TCAGCCGGGTGGACTCTC 60.680 66.667 31.91 0.00 37.49 3.20
758 763 2.681778 CAGCCGGGTGGACTCTCT 60.682 66.667 26.09 0.00 37.49 3.10
759 764 2.120718 AGCCGGGTGGACTCTCTT 59.879 61.111 4.72 0.00 37.49 2.85
760 765 1.536662 AGCCGGGTGGACTCTCTTT 60.537 57.895 4.72 0.00 37.49 2.52
761 766 1.079057 GCCGGGTGGACTCTCTTTC 60.079 63.158 2.18 0.00 37.49 2.62
762 767 1.215647 CCGGGTGGACTCTCTTTCG 59.784 63.158 0.00 0.00 37.49 3.46
763 768 1.533469 CCGGGTGGACTCTCTTTCGT 61.533 60.000 0.00 0.00 37.49 3.85
764 769 0.109226 CGGGTGGACTCTCTTTCGTC 60.109 60.000 0.00 0.00 0.00 4.20
768 773 3.403276 GGACTCTCTTTCGTCCGTG 57.597 57.895 0.00 0.00 40.18 4.94
769 774 0.597072 GGACTCTCTTTCGTCCGTGT 59.403 55.000 0.00 0.00 40.18 4.49
770 775 1.808945 GGACTCTCTTTCGTCCGTGTA 59.191 52.381 0.00 0.00 40.18 2.90
771 776 2.227388 GGACTCTCTTTCGTCCGTGTAA 59.773 50.000 0.00 0.00 40.18 2.41
772 777 3.304928 GGACTCTCTTTCGTCCGTGTAAA 60.305 47.826 0.00 0.00 40.18 2.01
773 778 4.483311 GACTCTCTTTCGTCCGTGTAAAT 58.517 43.478 0.00 0.00 0.00 1.40
774 779 5.392380 GGACTCTCTTTCGTCCGTGTAAATA 60.392 44.000 0.00 0.00 40.18 1.40
775 780 6.205101 ACTCTCTTTCGTCCGTGTAAATAT 57.795 37.500 0.00 0.00 0.00 1.28
776 781 6.628185 ACTCTCTTTCGTCCGTGTAAATATT 58.372 36.000 0.00 0.00 0.00 1.28
777 782 6.530534 ACTCTCTTTCGTCCGTGTAAATATTG 59.469 38.462 0.00 0.00 0.00 1.90
778 783 5.290158 TCTCTTTCGTCCGTGTAAATATTGC 59.710 40.000 0.00 0.00 0.00 3.56
779 784 3.910862 TTCGTCCGTGTAAATATTGCG 57.089 42.857 0.00 0.00 0.00 4.85
780 785 3.148026 TCGTCCGTGTAAATATTGCGA 57.852 42.857 0.00 0.00 0.00 5.10
781 786 2.853594 TCGTCCGTGTAAATATTGCGAC 59.146 45.455 0.00 0.00 0.00 5.19
782 787 2.346012 CGTCCGTGTAAATATTGCGACG 60.346 50.000 0.00 0.00 0.00 5.12
783 788 2.034339 GTCCGTGTAAATATTGCGACGG 60.034 50.000 19.27 19.27 46.09 4.79
784 789 1.332552 CCGTGTAAATATTGCGACGGC 60.333 52.381 15.51 0.00 39.84 5.68
785 790 1.652588 CGTGTAAATATTGCGACGGCG 60.653 52.381 6.12 6.12 44.10 6.46
786 791 1.325338 GTGTAAATATTGCGACGGCGT 59.675 47.619 14.65 14.65 44.10 5.68
787 792 2.535166 GTGTAAATATTGCGACGGCGTA 59.465 45.455 14.74 4.10 44.10 4.42
788 793 3.000122 GTGTAAATATTGCGACGGCGTAA 60.000 43.478 18.52 18.52 45.72 3.18
795 800 2.791417 TGCGACGGCGTAATAAAAAG 57.209 45.000 14.74 0.00 44.10 2.27
796 801 1.201943 TGCGACGGCGTAATAAAAAGC 60.202 47.619 14.74 9.18 44.10 3.51
797 802 1.061566 GCGACGGCGTAATAAAAAGCT 59.938 47.619 14.74 0.00 40.36 3.74
798 803 2.475022 GCGACGGCGTAATAAAAAGCTT 60.475 45.455 14.74 0.00 40.36 3.74
799 804 3.339695 CGACGGCGTAATAAAAAGCTTC 58.660 45.455 14.74 0.00 0.00 3.86
800 805 3.339695 GACGGCGTAATAAAAAGCTTCG 58.660 45.455 14.74 0.00 0.00 3.79
801 806 2.995258 ACGGCGTAATAAAAAGCTTCGA 59.005 40.909 12.58 0.00 0.00 3.71
802 807 3.432933 ACGGCGTAATAAAAAGCTTCGAA 59.567 39.130 12.58 0.00 0.00 3.71
803 808 4.019867 CGGCGTAATAAAAAGCTTCGAAG 58.980 43.478 21.02 21.02 0.00 3.79
804 809 4.435121 CGGCGTAATAAAAAGCTTCGAAGT 60.435 41.667 25.24 10.34 0.00 3.01
805 810 5.388111 GGCGTAATAAAAAGCTTCGAAGTT 58.612 37.500 25.24 17.83 0.00 2.66
806 811 5.854866 GGCGTAATAAAAAGCTTCGAAGTTT 59.145 36.000 25.24 22.63 0.00 2.66
807 812 6.183359 GGCGTAATAAAAAGCTTCGAAGTTTG 60.183 38.462 25.18 12.59 29.55 2.93
808 813 6.358822 GCGTAATAAAAAGCTTCGAAGTTTGT 59.641 34.615 25.18 18.51 29.55 2.83
809 814 7.407976 GCGTAATAAAAAGCTTCGAAGTTTGTC 60.408 37.037 25.18 9.53 29.55 3.18
810 815 7.797123 CGTAATAAAAAGCTTCGAAGTTTGTCT 59.203 33.333 25.18 15.55 29.55 3.41
815 820 8.751302 AAAAAGCTTCGAAGTTTGTCTAAAAA 57.249 26.923 25.18 0.00 29.55 1.94
848 853 5.845391 AAAAACAAATCGAGGAAGACCAA 57.155 34.783 0.00 0.00 38.94 3.67
850 855 2.427506 ACAAATCGAGGAAGACCAAGC 58.572 47.619 0.00 0.00 38.94 4.01
851 856 2.224523 ACAAATCGAGGAAGACCAAGCA 60.225 45.455 0.00 0.00 38.94 3.91
902 953 1.669440 CCCTCGAACACCGGAGAAA 59.331 57.895 9.46 0.00 39.14 2.52
934 985 1.612739 AAGACCTTCGACCTCCCCC 60.613 63.158 0.00 0.00 0.00 5.40
958 1009 1.203237 TCTCGAGGGGCAATCAATCA 58.797 50.000 13.56 0.00 0.00 2.57
959 1010 1.559219 TCTCGAGGGGCAATCAATCAA 59.441 47.619 13.56 0.00 0.00 2.57
960 1011 2.173356 TCTCGAGGGGCAATCAATCAAT 59.827 45.455 13.56 0.00 0.00 2.57
961 1012 2.551459 CTCGAGGGGCAATCAATCAATC 59.449 50.000 3.91 0.00 0.00 2.67
1184 1255 3.188786 GGTCGATCAGGTGCGTGC 61.189 66.667 0.00 0.00 0.00 5.34
1188 1259 3.121030 GATCAGGTGCGTGCGCTT 61.121 61.111 17.49 0.00 42.51 4.68
1202 1273 2.508663 GCTTCCGCCACCGTAGAC 60.509 66.667 0.00 0.00 0.00 2.59
1224 1295 2.419297 CGCCTTTCCAGCAGACTTATCT 60.419 50.000 0.00 0.00 34.57 1.98
1227 1298 4.836825 CCTTTCCAGCAGACTTATCTTGA 58.163 43.478 0.00 0.00 30.42 3.02
1228 1299 5.435291 CCTTTCCAGCAGACTTATCTTGAT 58.565 41.667 0.00 0.00 30.42 2.57
1229 1300 5.526846 CCTTTCCAGCAGACTTATCTTGATC 59.473 44.000 0.00 0.00 30.42 2.92
1230 1301 5.946942 TTCCAGCAGACTTATCTTGATCT 57.053 39.130 0.00 0.00 30.42 2.75
1231 1302 5.528043 TCCAGCAGACTTATCTTGATCTC 57.472 43.478 0.00 0.00 30.42 2.75
1232 1303 4.958581 TCCAGCAGACTTATCTTGATCTCA 59.041 41.667 0.00 0.00 30.42 3.27
1271 1342 6.518208 AGACTACCTAGTGATTTGTCAGAC 57.482 41.667 0.00 0.00 36.50 3.51
1287 1358 3.060895 GTCAGACGAGCAAGTAATTTCCG 59.939 47.826 0.00 0.00 0.00 4.30
1328 1400 4.342772 AGATGCAAACGCGTTATCATTTC 58.657 39.130 27.94 20.96 0.00 2.17
1341 1413 7.894247 CGCGTTATCATTTCGTCTTAGTTTAAA 59.106 33.333 0.00 0.00 0.00 1.52
1369 1441 9.877178 ATAAGTACTAACCTCTGTCTTGAATTG 57.123 33.333 0.00 0.00 0.00 2.32
1516 1599 1.202976 ACTGGCTTGAGCAGATTGGTT 60.203 47.619 5.24 0.00 44.36 3.67
1518 1601 0.529378 GGCTTGAGCAGATTGGTTGG 59.471 55.000 5.24 0.00 44.36 3.77
1519 1602 1.251251 GCTTGAGCAGATTGGTTGGT 58.749 50.000 0.00 0.00 41.59 3.67
2227 2313 2.031157 CGTGGGTCTGGTTTGATGTTTC 60.031 50.000 0.00 0.00 0.00 2.78
2299 2414 5.500234 AGCTAGATCACAAATGTTTGCCTA 58.500 37.500 5.44 2.68 41.79 3.93
2309 2426 2.284754 TGTTTGCCTACCTGATGCAA 57.715 45.000 0.00 0.00 42.77 4.08
2327 2444 7.660112 TGATGCAATTTTCTCTCTTAAAGCAA 58.340 30.769 0.00 0.00 0.00 3.91
2402 2519 0.108898 TAATGGCCGTTGTGCAATGC 60.109 50.000 20.91 0.00 0.00 3.56
2497 3492 7.887996 TTTGGTCATTTGATTGCTGTTTATC 57.112 32.000 0.00 0.00 0.00 1.75
2553 3548 5.240183 AGTTTCCTCATTCACACACTGATTG 59.760 40.000 0.00 0.00 33.29 2.67
2823 3938 8.296713 TGATGTAAACATTTTCTCTTTACCAGC 58.703 33.333 0.00 0.00 36.57 4.85
3046 4166 6.594159 ACGGAATTTTATGTCCACACTCTAAG 59.406 38.462 0.00 0.00 33.10 2.18
3100 4221 7.676683 ACTGGTATCCTTATGACATAAGTGT 57.323 36.000 26.21 18.69 40.44 3.55
3130 4251 5.007430 TGTTAAAAATTTACAGTCGCGTGGA 59.993 36.000 5.77 0.00 0.00 4.02
3143 4264 1.062587 CGCGTGGAATTGATCACCTTC 59.937 52.381 0.00 1.58 0.00 3.46
3241 4362 3.049708 TGAGCATCAGAGTTTGTCCAG 57.950 47.619 0.00 0.00 42.56 3.86
3252 4373 8.924511 TCAGAGTTTGTCCAGATTAATTCTTT 57.075 30.769 0.00 0.00 29.93 2.52
3499 4626 9.288576 AGAGAAACTATCATGTCAAACATTCAA 57.711 29.630 0.00 0.00 36.53 2.69
3551 4678 5.045942 AGGTTCCAAATTTGTGGTTTTCACT 60.046 36.000 16.73 0.63 46.20 3.41
3575 4747 2.679355 TCATGGTTTTCACGCTTTCG 57.321 45.000 0.00 0.00 42.43 3.46
3679 4854 6.403866 AATTGTATTGTGCTTCAGTGGAAA 57.596 33.333 0.00 0.00 31.35 3.13
3690 4865 6.089954 GTGCTTCAGTGGAAATTTTTATGCTC 59.910 38.462 0.00 0.00 31.35 4.26
3872 5047 2.687935 TGGTTTTGTTGCTCTCCAGTTC 59.312 45.455 0.00 0.00 0.00 3.01
3903 5078 8.299570 GTTTCTTTGATGTGACAAGTTCCATAT 58.700 33.333 0.00 0.00 0.00 1.78
4171 5428 3.244665 CCAATCACCTGCAGCCTATATGA 60.245 47.826 8.66 4.94 0.00 2.15
5249 6510 8.748380 ATTTAGATGCAGAAAGTTTTACTTGC 57.252 30.769 0.00 0.00 38.66 4.01
5560 6924 8.168058 ACATACTTGGTTTTCTTTGTACCCTAT 58.832 33.333 0.00 0.00 0.00 2.57
7045 8477 3.945981 TCGTGACATGTTAGCCACTTA 57.054 42.857 12.10 0.37 0.00 2.24
7129 8561 4.072839 GCCTAATCCAGCCCACTAATTAC 58.927 47.826 0.00 0.00 0.00 1.89
7132 8564 3.864789 ATCCAGCCCACTAATTACAGG 57.135 47.619 0.00 0.00 0.00 4.00
7251 8683 1.672898 CATGTTGGCCCCTTTGGTG 59.327 57.895 0.00 0.00 36.04 4.17
7254 8686 2.200092 TTGGCCCCTTTGGTGGAC 59.800 61.111 0.00 0.00 36.04 4.02
7297 8729 2.919666 AAATCAATGCCCGTCGAAAG 57.080 45.000 0.00 0.00 0.00 2.62
7617 9061 2.105821 TCCCAATCTCAAGTGGTTCGTT 59.894 45.455 0.00 0.00 39.03 3.85
7620 9064 3.058914 CCAATCTCAAGTGGTTCGTTGAC 60.059 47.826 0.00 0.00 35.87 3.18
7631 9075 3.103911 CGTTGACGTGGAGCCGAC 61.104 66.667 0.00 0.00 34.11 4.79
7680 9124 2.635229 CTAACCGCGCTGCTCATCCT 62.635 60.000 5.56 0.00 0.00 3.24
7707 9151 3.802139 TCTCATGTGTTCTCACGTTGTTC 59.198 43.478 0.00 0.00 46.49 3.18
7712 9156 3.187700 GTGTTCTCACGTTGTTCTGTCT 58.812 45.455 0.00 0.00 34.79 3.41
7714 9158 2.509052 TCTCACGTTGTTCTGTCTGG 57.491 50.000 0.00 0.00 0.00 3.86
7715 9159 2.028876 TCTCACGTTGTTCTGTCTGGA 58.971 47.619 0.00 0.00 0.00 3.86
7716 9160 2.628178 TCTCACGTTGTTCTGTCTGGAT 59.372 45.455 0.00 0.00 0.00 3.41
7717 9161 2.989840 CTCACGTTGTTCTGTCTGGATC 59.010 50.000 0.00 0.00 0.00 3.36
7718 9162 2.364002 TCACGTTGTTCTGTCTGGATCA 59.636 45.455 0.00 0.00 0.00 2.92
7741 9186 0.536460 TTCGTTTGGTCCTTGCTCCC 60.536 55.000 0.00 0.00 0.00 4.30
7780 9225 1.251251 GGCTGGTTCTGCATCTTGTT 58.749 50.000 0.00 0.00 0.00 2.83
7930 9452 1.996292 CTGCGGAGTTTCGAGATTGA 58.004 50.000 0.00 0.00 0.00 2.57
8017 9542 6.016276 GGAATAACTTTTCTGCTTGAGTTGGA 60.016 38.462 0.00 0.00 34.46 3.53
8019 9544 2.614057 ACTTTTCTGCTTGAGTTGGACG 59.386 45.455 0.00 0.00 0.00 4.79
8031 9556 0.165944 GTTGGACGCCGAATCTGTTG 59.834 55.000 0.00 0.00 0.00 3.33
8130 9655 4.467232 GATCGCCTGATCGGATCG 57.533 61.111 12.99 6.47 41.51 3.69
8187 9719 2.403259 CGACAAATCCCCAAAGCAAAC 58.597 47.619 0.00 0.00 0.00 2.93
8237 9769 6.489700 TCTTCTCTGATGATAGCTACCTCTTG 59.510 42.308 0.00 0.00 0.00 3.02
8298 9832 1.981256 TGGCTCCTTTTGTGGACTTC 58.019 50.000 0.00 0.00 31.94 3.01
8313 9847 9.595823 TTTGTGGACTTCATTATTAGTAGTAGC 57.404 33.333 0.00 0.00 0.00 3.58
8334 9868 5.762045 AGCATTATGTCCGTATCAAAATGC 58.238 37.500 8.64 8.64 44.93 3.56
8340 9874 4.068599 TGTCCGTATCAAAATGCAAGACA 58.931 39.130 0.00 0.00 32.04 3.41
8354 9888 5.627499 TGCAAGACATTTTTGTAGCCTAG 57.373 39.130 0.00 0.00 0.00 3.02
8361 9895 8.919777 AGACATTTTTGTAGCCTAGTTTAGTT 57.080 30.769 0.00 0.00 0.00 2.24
8389 9923 9.393249 ACACAAAACATCTTATATTTTGACACG 57.607 29.630 13.87 4.17 43.07 4.49
8392 9926 9.619316 CAAAACATCTTATATTTTGACACGGAA 57.381 29.630 3.19 0.00 43.07 4.30
8405 9939 3.252215 TGACACGGAAATAGTGCTTTTGG 59.748 43.478 0.00 0.00 42.94 3.28
8417 9951 1.501741 CTTTTGGACCGTCGCCATG 59.498 57.895 0.00 0.00 34.90 3.66
8418 9952 1.228003 TTTTGGACCGTCGCCATGT 60.228 52.632 0.00 0.00 34.90 3.21
8502 10036 6.273825 TCTAACTCGCCAATGAGAACTATTC 58.726 40.000 0.00 0.00 39.35 1.75
8503 10037 3.448686 ACTCGCCAATGAGAACTATTCG 58.551 45.455 0.00 0.00 39.35 3.34
8515 10049 5.405571 TGAGAACTATTCGAAGAAGTTGCAC 59.594 40.000 25.15 17.65 45.90 4.57
8516 10050 4.691216 AGAACTATTCGAAGAAGTTGCACC 59.309 41.667 25.15 14.77 45.90 5.01
8535 10069 2.117206 GTCCCCCACATGTTGCCA 59.883 61.111 0.00 0.00 0.00 4.92
8551 10085 3.646611 TGCCACTGTCATGTCAAATTG 57.353 42.857 0.00 0.00 0.00 2.32
8556 10090 3.737266 CACTGTCATGTCAAATTGTTGGC 59.263 43.478 0.00 0.00 39.95 4.52
8571 10105 0.250295 TTGGCTGGTCCTTCGACTTG 60.250 55.000 0.00 0.00 39.15 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
149 150 9.915629 ACTGTGTTTTTGAATTTGTTAAGTGTA 57.084 25.926 0.00 0.00 0.00 2.90
150 151 8.707839 CACTGTGTTTTTGAATTTGTTAAGTGT 58.292 29.630 0.00 0.00 0.00 3.55
151 152 8.920665 TCACTGTGTTTTTGAATTTGTTAAGTG 58.079 29.630 7.79 0.00 0.00 3.16
152 153 9.651913 ATCACTGTGTTTTTGAATTTGTTAAGT 57.348 25.926 7.79 0.00 0.00 2.24
169 170 9.230122 TGTTCAATGAACATATAATCACTGTGT 57.770 29.630 23.28 0.00 45.88 3.72
184 185 7.593273 TCGTATGTTGGAAATTGTTCAATGAAC 59.407 33.333 18.42 18.42 42.26 3.18
185 186 7.652727 TCGTATGTTGGAAATTGTTCAATGAA 58.347 30.769 0.00 0.00 35.25 2.57
186 187 7.208225 TCGTATGTTGGAAATTGTTCAATGA 57.792 32.000 0.00 0.00 35.25 2.57
187 188 7.754475 TCATCGTATGTTGGAAATTGTTCAATG 59.246 33.333 0.00 0.00 35.25 2.82
188 189 7.825681 TCATCGTATGTTGGAAATTGTTCAAT 58.174 30.769 0.00 0.00 35.25 2.57
189 190 7.208225 TCATCGTATGTTGGAAATTGTTCAA 57.792 32.000 0.00 0.00 35.25 2.69
190 191 6.809630 TCATCGTATGTTGGAAATTGTTCA 57.190 33.333 0.00 0.00 35.25 3.18
191 192 7.081349 TGTTCATCGTATGTTGGAAATTGTTC 58.919 34.615 0.00 0.00 0.00 3.18
192 193 6.976088 TGTTCATCGTATGTTGGAAATTGTT 58.024 32.000 0.00 0.00 0.00 2.83
193 194 6.567687 TGTTCATCGTATGTTGGAAATTGT 57.432 33.333 0.00 0.00 0.00 2.71
194 195 8.464770 AATTGTTCATCGTATGTTGGAAATTG 57.535 30.769 0.00 0.00 0.00 2.32
195 196 9.487790 AAAATTGTTCATCGTATGTTGGAAATT 57.512 25.926 0.00 0.00 0.00 1.82
207 208 9.970395 ATCATGCATTATAAAATTGTTCATCGT 57.030 25.926 0.00 0.00 0.00 3.73
235 236 9.843334 TGTTCACGTTTTATTTCTACAAAAGTT 57.157 25.926 0.00 0.00 0.00 2.66
236 237 9.281075 GTGTTCACGTTTTATTTCTACAAAAGT 57.719 29.630 0.00 0.00 0.00 2.66
237 238 9.498307 AGTGTTCACGTTTTATTTCTACAAAAG 57.502 29.630 0.00 0.00 0.00 2.27
238 239 9.843334 AAGTGTTCACGTTTTATTTCTACAAAA 57.157 25.926 0.00 0.00 0.00 2.44
239 240 9.493206 GAAGTGTTCACGTTTTATTTCTACAAA 57.507 29.630 0.00 0.00 0.00 2.83
240 241 8.124199 GGAAGTGTTCACGTTTTATTTCTACAA 58.876 33.333 0.00 0.00 0.00 2.41
241 242 7.496591 AGGAAGTGTTCACGTTTTATTTCTACA 59.503 33.333 0.00 0.00 0.00 2.74
242 243 7.858583 AGGAAGTGTTCACGTTTTATTTCTAC 58.141 34.615 0.00 0.00 0.00 2.59
243 244 8.441312 AAGGAAGTGTTCACGTTTTATTTCTA 57.559 30.769 0.00 0.00 0.00 2.10
244 245 6.937436 AGGAAGTGTTCACGTTTTATTTCT 57.063 33.333 0.00 0.00 0.00 2.52
245 246 9.673454 ATTAAGGAAGTGTTCACGTTTTATTTC 57.327 29.630 0.00 0.00 0.00 2.17
246 247 9.458374 CATTAAGGAAGTGTTCACGTTTTATTT 57.542 29.630 0.00 0.00 0.00 1.40
247 248 8.626526 ACATTAAGGAAGTGTTCACGTTTTATT 58.373 29.630 0.00 0.00 0.00 1.40
248 249 8.161699 ACATTAAGGAAGTGTTCACGTTTTAT 57.838 30.769 0.00 0.00 0.00 1.40
249 250 7.556733 ACATTAAGGAAGTGTTCACGTTTTA 57.443 32.000 0.00 0.00 0.00 1.52
250 251 6.445357 ACATTAAGGAAGTGTTCACGTTTT 57.555 33.333 0.00 0.00 0.00 2.43
251 252 7.442969 TCATACATTAAGGAAGTGTTCACGTTT 59.557 33.333 0.00 0.00 0.00 3.60
252 253 6.932400 TCATACATTAAGGAAGTGTTCACGTT 59.068 34.615 0.00 0.00 0.00 3.99
253 254 6.460781 TCATACATTAAGGAAGTGTTCACGT 58.539 36.000 0.00 0.00 0.00 4.49
254 255 6.961359 TCATACATTAAGGAAGTGTTCACG 57.039 37.500 0.00 0.00 0.00 4.35
255 256 8.492673 TCATCATACATTAAGGAAGTGTTCAC 57.507 34.615 0.00 0.00 0.00 3.18
256 257 8.946085 GTTCATCATACATTAAGGAAGTGTTCA 58.054 33.333 0.00 0.00 0.00 3.18
257 258 8.946085 TGTTCATCATACATTAAGGAAGTGTTC 58.054 33.333 0.00 0.00 0.00 3.18
258 259 8.862325 TGTTCATCATACATTAAGGAAGTGTT 57.138 30.769 0.00 0.00 0.00 3.32
259 260 9.466497 AATGTTCATCATACATTAAGGAAGTGT 57.534 29.630 0.00 0.00 42.68 3.55
394 395 9.454859 TCTTTTCTCTTTCTCTTTCTGTTTCTT 57.545 29.630 0.00 0.00 0.00 2.52
395 396 9.108284 CTCTTTTCTCTTTCTCTTTCTGTTTCT 57.892 33.333 0.00 0.00 0.00 2.52
396 397 9.103861 TCTCTTTTCTCTTTCTCTTTCTGTTTC 57.896 33.333 0.00 0.00 0.00 2.78
397 398 9.454859 TTCTCTTTTCTCTTTCTCTTTCTGTTT 57.545 29.630 0.00 0.00 0.00 2.83
398 399 9.108284 CTTCTCTTTTCTCTTTCTCTTTCTGTT 57.892 33.333 0.00 0.00 0.00 3.16
399 400 8.482128 TCTTCTCTTTTCTCTTTCTCTTTCTGT 58.518 33.333 0.00 0.00 0.00 3.41
400 401 8.885494 TCTTCTCTTTTCTCTTTCTCTTTCTG 57.115 34.615 0.00 0.00 0.00 3.02
401 402 9.898152 TTTCTTCTCTTTTCTCTTTCTCTTTCT 57.102 29.630 0.00 0.00 0.00 2.52
404 405 9.454859 TGTTTTCTTCTCTTTTCTCTTTCTCTT 57.545 29.630 0.00 0.00 0.00 2.85
405 406 9.108284 CTGTTTTCTTCTCTTTTCTCTTTCTCT 57.892 33.333 0.00 0.00 0.00 3.10
406 407 7.855409 GCTGTTTTCTTCTCTTTTCTCTTTCTC 59.145 37.037 0.00 0.00 0.00 2.87
407 408 7.466590 CGCTGTTTTCTTCTCTTTTCTCTTTCT 60.467 37.037 0.00 0.00 0.00 2.52
408 409 6.630840 CGCTGTTTTCTTCTCTTTTCTCTTTC 59.369 38.462 0.00 0.00 0.00 2.62
409 410 6.316390 TCGCTGTTTTCTTCTCTTTTCTCTTT 59.684 34.615 0.00 0.00 0.00 2.52
410 411 5.817816 TCGCTGTTTTCTTCTCTTTTCTCTT 59.182 36.000 0.00 0.00 0.00 2.85
411 412 5.360591 TCGCTGTTTTCTTCTCTTTTCTCT 58.639 37.500 0.00 0.00 0.00 3.10
412 413 5.659048 TCGCTGTTTTCTTCTCTTTTCTC 57.341 39.130 0.00 0.00 0.00 2.87
413 414 5.504830 GCTTCGCTGTTTTCTTCTCTTTTCT 60.505 40.000 0.00 0.00 0.00 2.52
414 415 4.672862 GCTTCGCTGTTTTCTTCTCTTTTC 59.327 41.667 0.00 0.00 0.00 2.29
415 416 4.096382 TGCTTCGCTGTTTTCTTCTCTTTT 59.904 37.500 0.00 0.00 0.00 2.27
416 417 3.627577 TGCTTCGCTGTTTTCTTCTCTTT 59.372 39.130 0.00 0.00 0.00 2.52
417 418 3.206150 TGCTTCGCTGTTTTCTTCTCTT 58.794 40.909 0.00 0.00 0.00 2.85
418 419 2.838736 TGCTTCGCTGTTTTCTTCTCT 58.161 42.857 0.00 0.00 0.00 3.10
419 420 3.002759 AGTTGCTTCGCTGTTTTCTTCTC 59.997 43.478 0.00 0.00 0.00 2.87
420 421 2.945668 AGTTGCTTCGCTGTTTTCTTCT 59.054 40.909 0.00 0.00 0.00 2.85
421 422 3.038710 CAGTTGCTTCGCTGTTTTCTTC 58.961 45.455 0.00 0.00 0.00 2.87
422 423 2.796032 GCAGTTGCTTCGCTGTTTTCTT 60.796 45.455 0.00 0.00 38.21 2.52
423 424 1.268743 GCAGTTGCTTCGCTGTTTTCT 60.269 47.619 0.00 0.00 38.21 2.52
424 425 1.123655 GCAGTTGCTTCGCTGTTTTC 58.876 50.000 0.00 0.00 38.21 2.29
425 426 0.592247 CGCAGTTGCTTCGCTGTTTT 60.592 50.000 2.29 0.00 39.32 2.43
426 427 1.009675 CGCAGTTGCTTCGCTGTTT 60.010 52.632 2.29 0.00 39.32 2.83
427 428 1.436195 TTCGCAGTTGCTTCGCTGTT 61.436 50.000 2.29 0.00 39.32 3.16
428 429 1.436195 TTTCGCAGTTGCTTCGCTGT 61.436 50.000 2.29 0.00 39.32 4.40
429 430 0.993746 GTTTCGCAGTTGCTTCGCTG 60.994 55.000 2.29 0.00 39.32 5.18
430 431 1.279840 GTTTCGCAGTTGCTTCGCT 59.720 52.632 2.29 0.00 39.32 4.93
431 432 0.591236 TTGTTTCGCAGTTGCTTCGC 60.591 50.000 2.29 0.00 39.32 4.70
432 433 1.112459 GTTGTTTCGCAGTTGCTTCG 58.888 50.000 2.29 0.00 39.32 3.79
433 434 1.202245 TGGTTGTTTCGCAGTTGCTTC 60.202 47.619 2.29 0.00 39.32 3.86
434 435 0.814457 TGGTTGTTTCGCAGTTGCTT 59.186 45.000 2.29 0.00 39.32 3.91
435 436 1.032014 ATGGTTGTTTCGCAGTTGCT 58.968 45.000 2.29 0.00 39.32 3.91
436 437 1.130955 CATGGTTGTTTCGCAGTTGC 58.869 50.000 0.00 0.00 37.78 4.17
437 438 1.602668 CCCATGGTTGTTTCGCAGTTG 60.603 52.381 11.73 0.00 0.00 3.16
438 439 0.673437 CCCATGGTTGTTTCGCAGTT 59.327 50.000 11.73 0.00 0.00 3.16
439 440 1.805428 GCCCATGGTTGTTTCGCAGT 61.805 55.000 11.73 0.00 0.00 4.40
440 441 1.080569 GCCCATGGTTGTTTCGCAG 60.081 57.895 11.73 0.00 0.00 5.18
441 442 2.569354 GGCCCATGGTTGTTTCGCA 61.569 57.895 11.73 0.00 0.00 5.10
442 443 2.261361 GGCCCATGGTTGTTTCGC 59.739 61.111 11.73 4.58 0.00 4.70
443 444 2.566010 CGGCCCATGGTTGTTTCG 59.434 61.111 11.73 1.38 0.00 3.46
444 445 2.969827 CCGGCCCATGGTTGTTTC 59.030 61.111 11.73 0.00 0.00 2.78
445 446 3.310307 GCCGGCCCATGGTTGTTT 61.310 61.111 18.11 0.00 0.00 2.83
464 465 3.635734 CTCGCGACGCCAGCTTTTG 62.636 63.158 15.34 0.00 0.00 2.44
465 466 3.414700 CTCGCGACGCCAGCTTTT 61.415 61.111 15.34 0.00 0.00 2.27
478 479 3.858989 GCTGAAGCTTCGCCTCGC 61.859 66.667 23.84 16.22 38.21 5.03
479 480 3.549150 CGCTGAAGCTTCGCCTCG 61.549 66.667 26.34 19.80 39.32 4.63
480 481 1.691215 CTTCGCTGAAGCTTCGCCTC 61.691 60.000 26.34 14.11 39.32 4.70
481 482 1.739562 CTTCGCTGAAGCTTCGCCT 60.740 57.895 26.34 0.00 39.32 5.52
482 483 2.781300 CTTCGCTGAAGCTTCGCC 59.219 61.111 26.34 17.53 39.32 5.54
495 496 3.777925 CAGAACGGCGTGGCTTCG 61.778 66.667 15.70 0.00 0.00 3.79
496 497 2.357034 TCAGAACGGCGTGGCTTC 60.357 61.111 15.70 7.43 0.00 3.86
497 498 2.665185 GTCAGAACGGCGTGGCTT 60.665 61.111 15.70 0.00 0.00 4.35
507 508 2.846918 GCTCGTGTGCGTCAGAAC 59.153 61.111 0.00 0.00 39.49 3.01
515 516 0.370273 CCTATTTGACGCTCGTGTGC 59.630 55.000 0.00 0.00 0.00 4.57
516 517 0.999406 CCCTATTTGACGCTCGTGTG 59.001 55.000 0.00 0.00 0.00 3.82
517 518 0.892755 TCCCTATTTGACGCTCGTGT 59.107 50.000 0.00 0.00 0.00 4.49
518 519 2.128035 GATCCCTATTTGACGCTCGTG 58.872 52.381 0.00 0.00 0.00 4.35
519 520 1.269102 CGATCCCTATTTGACGCTCGT 60.269 52.381 0.00 0.00 0.00 4.18
520 521 1.409412 CGATCCCTATTTGACGCTCG 58.591 55.000 0.00 0.00 0.00 5.03
521 522 1.140816 GCGATCCCTATTTGACGCTC 58.859 55.000 0.00 0.00 42.19 5.03
522 523 0.249911 GGCGATCCCTATTTGACGCT 60.250 55.000 0.00 0.00 44.31 5.07
523 524 0.531974 TGGCGATCCCTATTTGACGC 60.532 55.000 0.00 0.00 44.18 5.19
524 525 1.502231 CTGGCGATCCCTATTTGACG 58.498 55.000 0.00 0.00 0.00 4.35
525 526 1.202698 AGCTGGCGATCCCTATTTGAC 60.203 52.381 0.00 0.00 0.00 3.18
526 527 1.131638 AGCTGGCGATCCCTATTTGA 58.868 50.000 0.00 0.00 0.00 2.69
527 528 1.233019 CAGCTGGCGATCCCTATTTG 58.767 55.000 5.57 0.00 0.00 2.32
528 529 0.839946 ACAGCTGGCGATCCCTATTT 59.160 50.000 19.93 0.00 0.00 1.40
529 530 0.839946 AACAGCTGGCGATCCCTATT 59.160 50.000 19.93 0.00 0.00 1.73
530 531 0.839946 AAACAGCTGGCGATCCCTAT 59.160 50.000 19.93 0.00 0.00 2.57
531 532 0.618458 AAAACAGCTGGCGATCCCTA 59.382 50.000 19.93 0.00 0.00 3.53
532 533 0.962356 CAAAACAGCTGGCGATCCCT 60.962 55.000 19.93 0.00 0.00 4.20
533 534 1.508088 CAAAACAGCTGGCGATCCC 59.492 57.895 19.93 0.00 0.00 3.85
534 535 1.153958 GCAAAACAGCTGGCGATCC 60.154 57.895 19.93 0.00 0.00 3.36
535 536 4.465413 GCAAAACAGCTGGCGATC 57.535 55.556 19.93 0.00 0.00 3.69
539 540 3.903932 GAGGCGCAAAACAGCTGGC 62.904 63.158 19.93 10.69 35.22 4.85
540 541 2.256461 GAGGCGCAAAACAGCTGG 59.744 61.111 19.93 0.31 0.00 4.85
541 542 1.081641 CAGAGGCGCAAAACAGCTG 60.082 57.895 13.48 13.48 0.00 4.24
542 543 1.510480 GACAGAGGCGCAAAACAGCT 61.510 55.000 10.83 0.00 0.00 4.24
543 544 1.081840 GACAGAGGCGCAAAACAGC 60.082 57.895 10.83 0.00 0.00 4.40
585 588 0.386858 CACGACACGATCCGTTCAGT 60.387 55.000 0.00 0.00 38.32 3.41
588 591 2.442188 GGCACGACACGATCCGTTC 61.442 63.158 0.00 0.00 38.32 3.95
706 711 1.308998 CCGGCCAGCTTCGATTTATT 58.691 50.000 2.24 0.00 0.00 1.40
708 713 1.817941 GCCGGCCAGCTTCGATTTA 60.818 57.895 18.11 0.00 0.00 1.40
710 715 3.704231 ATGCCGGCCAGCTTCGATT 62.704 57.895 26.77 0.00 0.00 3.34
711 716 4.181010 ATGCCGGCCAGCTTCGAT 62.181 61.111 26.77 4.61 0.00 3.59
714 719 2.639327 AAACATGCCGGCCAGCTTC 61.639 57.895 26.77 0.00 0.00 3.86
715 720 2.601367 AAACATGCCGGCCAGCTT 60.601 55.556 26.77 11.15 0.00 3.74
716 721 3.376078 CAAACATGCCGGCCAGCT 61.376 61.111 26.77 4.36 0.00 4.24
717 722 4.440127 CCAAACATGCCGGCCAGC 62.440 66.667 26.77 3.21 0.00 4.85
721 726 2.774799 CCTAGCCAAACATGCCGGC 61.775 63.158 22.73 22.73 46.62 6.13
722 727 1.376609 GACCTAGCCAAACATGCCGG 61.377 60.000 0.00 0.00 0.00 6.13
723 728 0.676466 TGACCTAGCCAAACATGCCG 60.676 55.000 0.00 0.00 0.00 5.69
724 729 1.098050 CTGACCTAGCCAAACATGCC 58.902 55.000 0.00 0.00 0.00 4.40
735 740 2.363795 TCCACCCGGCTGACCTAG 60.364 66.667 0.00 0.00 0.00 3.02
736 741 2.682494 GTCCACCCGGCTGACCTA 60.682 66.667 0.00 0.00 0.00 3.08
738 743 4.083862 GAGTCCACCCGGCTGACC 62.084 72.222 11.28 2.31 0.00 4.02
739 744 2.997897 AGAGTCCACCCGGCTGAC 60.998 66.667 0.00 1.53 0.00 3.51
740 745 2.680352 GAGAGTCCACCCGGCTGA 60.680 66.667 0.00 0.00 0.00 4.26
741 746 1.831652 AAAGAGAGTCCACCCGGCTG 61.832 60.000 0.00 0.00 0.00 4.85
742 747 1.536662 AAAGAGAGTCCACCCGGCT 60.537 57.895 0.00 0.00 0.00 5.52
744 749 1.215647 CGAAAGAGAGTCCACCCGG 59.784 63.158 0.00 0.00 0.00 5.73
746 751 3.816580 GACGAAAGAGAGTCCACCC 57.183 57.895 0.00 0.00 0.00 4.61
751 756 3.549299 TTACACGGACGAAAGAGAGTC 57.451 47.619 0.00 0.00 36.70 3.36
752 757 3.996150 TTTACACGGACGAAAGAGAGT 57.004 42.857 0.00 0.00 0.00 3.24
753 758 6.508088 GCAATATTTACACGGACGAAAGAGAG 60.508 42.308 0.00 0.00 0.00 3.20
754 759 5.290158 GCAATATTTACACGGACGAAAGAGA 59.710 40.000 0.00 0.00 0.00 3.10
755 760 5.490213 GCAATATTTACACGGACGAAAGAG 58.510 41.667 0.00 0.00 0.00 2.85
756 761 4.031991 CGCAATATTTACACGGACGAAAGA 59.968 41.667 0.00 0.00 0.00 2.52
757 762 4.031991 TCGCAATATTTACACGGACGAAAG 59.968 41.667 0.00 0.00 0.00 2.62
758 763 3.925299 TCGCAATATTTACACGGACGAAA 59.075 39.130 0.00 0.00 0.00 3.46
759 764 3.304026 GTCGCAATATTTACACGGACGAA 59.696 43.478 0.00 0.00 0.00 3.85
760 765 2.853594 GTCGCAATATTTACACGGACGA 59.146 45.455 0.00 0.00 0.00 4.20
761 766 2.346012 CGTCGCAATATTTACACGGACG 60.346 50.000 0.00 0.00 0.00 4.79
762 767 3.214699 CGTCGCAATATTTACACGGAC 57.785 47.619 0.00 0.00 0.00 4.79
764 769 2.638628 CCGTCGCAATATTTACACGG 57.361 50.000 12.24 12.24 40.73 4.94
765 770 1.652588 CGCCGTCGCAATATTTACACG 60.653 52.381 3.77 3.77 34.03 4.49
766 771 1.325338 ACGCCGTCGCAATATTTACAC 59.675 47.619 0.00 0.00 39.84 2.90
767 772 1.642728 ACGCCGTCGCAATATTTACA 58.357 45.000 0.00 0.00 39.84 2.41
768 773 3.839823 TTACGCCGTCGCAATATTTAC 57.160 42.857 0.00 0.00 39.84 2.01
769 774 6.522233 TTTATTACGCCGTCGCAATATTTA 57.478 33.333 0.00 0.00 34.86 1.40
770 775 5.406767 TTTATTACGCCGTCGCAATATTT 57.593 34.783 0.00 0.00 34.86 1.40
771 776 5.406767 TTTTATTACGCCGTCGCAATATT 57.593 34.783 0.00 0.00 34.86 1.28
772 777 5.406767 TTTTTATTACGCCGTCGCAATAT 57.593 34.783 0.00 0.00 34.86 1.28
773 778 4.782822 GCTTTTTATTACGCCGTCGCAATA 60.783 41.667 0.00 0.00 39.84 1.90
774 779 3.676540 CTTTTTATTACGCCGTCGCAAT 58.323 40.909 0.00 0.00 39.84 3.56
775 780 2.725452 GCTTTTTATTACGCCGTCGCAA 60.725 45.455 0.00 0.00 39.84 4.85
776 781 1.201943 GCTTTTTATTACGCCGTCGCA 60.202 47.619 0.00 0.00 39.84 5.10
777 782 1.061566 AGCTTTTTATTACGCCGTCGC 59.938 47.619 0.00 0.00 39.84 5.19
778 783 3.339695 GAAGCTTTTTATTACGCCGTCG 58.660 45.455 0.00 0.00 42.43 5.12
779 784 3.061161 TCGAAGCTTTTTATTACGCCGTC 59.939 43.478 0.00 0.00 0.00 4.79
780 785 2.995258 TCGAAGCTTTTTATTACGCCGT 59.005 40.909 0.00 0.00 0.00 5.68
781 786 3.644805 TCGAAGCTTTTTATTACGCCG 57.355 42.857 0.00 0.00 0.00 6.46
782 787 4.966249 ACTTCGAAGCTTTTTATTACGCC 58.034 39.130 24.86 0.00 0.00 5.68
783 788 6.358822 ACAAACTTCGAAGCTTTTTATTACGC 59.641 34.615 24.86 0.00 0.00 4.42
784 789 7.797123 AGACAAACTTCGAAGCTTTTTATTACG 59.203 33.333 24.86 11.96 0.00 3.18
789 794 9.843334 TTTTTAGACAAACTTCGAAGCTTTTTA 57.157 25.926 24.86 8.25 0.00 1.52
790 795 8.751302 TTTTTAGACAAACTTCGAAGCTTTTT 57.249 26.923 24.86 14.77 0.00 1.94
902 953 2.676822 TCTTCCGACGAGCTGGCT 60.677 61.111 0.00 0.00 0.00 4.75
934 985 3.506059 ATTGCCCCTCGAGATCGCG 62.506 63.158 15.71 13.06 39.60 5.87
1050 1121 3.075005 TCCTTCGCCTTCCTCCGG 61.075 66.667 0.00 0.00 0.00 5.14
1089 1160 1.826921 CGGGTAGAAGAGCGCCCTA 60.827 63.158 2.29 0.00 38.97 3.53
1202 1273 0.036388 TAAGTCTGCTGGAAAGGCGG 60.036 55.000 0.00 0.00 37.41 6.13
1228 1299 0.241213 CGGTCTTGTCTCGCTTGAGA 59.759 55.000 0.00 0.00 46.41 3.27
1229 1300 0.241213 TCGGTCTTGTCTCGCTTGAG 59.759 55.000 0.00 0.00 41.33 3.02
1230 1301 0.241213 CTCGGTCTTGTCTCGCTTGA 59.759 55.000 0.00 0.00 0.00 3.02
1231 1302 0.241213 TCTCGGTCTTGTCTCGCTTG 59.759 55.000 0.00 0.00 0.00 4.01
1232 1303 0.241481 GTCTCGGTCTTGTCTCGCTT 59.759 55.000 0.00 0.00 0.00 4.68
1234 1305 1.085091 TAGTCTCGGTCTTGTCTCGC 58.915 55.000 0.00 0.00 0.00 5.03
1235 1306 1.397692 GGTAGTCTCGGTCTTGTCTCG 59.602 57.143 0.00 0.00 0.00 4.04
1236 1307 2.713877 AGGTAGTCTCGGTCTTGTCTC 58.286 52.381 0.00 0.00 0.00 3.36
1240 1311 3.607741 TCACTAGGTAGTCTCGGTCTTG 58.392 50.000 0.00 0.00 33.46 3.02
1241 1312 3.996921 TCACTAGGTAGTCTCGGTCTT 57.003 47.619 0.00 0.00 33.46 3.01
1242 1313 4.506937 AATCACTAGGTAGTCTCGGTCT 57.493 45.455 0.00 0.00 33.46 3.85
1243 1314 4.398673 ACAAATCACTAGGTAGTCTCGGTC 59.601 45.833 0.00 0.00 33.46 4.79
1244 1315 4.342359 ACAAATCACTAGGTAGTCTCGGT 58.658 43.478 0.00 0.00 33.46 4.69
1245 1316 4.398358 TGACAAATCACTAGGTAGTCTCGG 59.602 45.833 0.00 0.00 33.46 4.63
1271 1342 1.083489 TGGCGGAAATTACTTGCTCG 58.917 50.000 0.00 0.00 0.00 5.03
1287 1358 0.800012 TAAAAGTTCACCGCGATGGC 59.200 50.000 8.23 0.00 43.94 4.40
1346 1418 6.497259 TCCAATTCAAGACAGAGGTTAGTACT 59.503 38.462 0.00 0.00 0.00 2.73
1347 1419 6.698380 TCCAATTCAAGACAGAGGTTAGTAC 58.302 40.000 0.00 0.00 0.00 2.73
1348 1420 6.928348 TCCAATTCAAGACAGAGGTTAGTA 57.072 37.500 0.00 0.00 0.00 1.82
1349 1421 5.825593 TCCAATTCAAGACAGAGGTTAGT 57.174 39.130 0.00 0.00 0.00 2.24
1350 1422 6.404074 GCATTCCAATTCAAGACAGAGGTTAG 60.404 42.308 0.00 0.00 0.00 2.34
1362 1434 7.549842 CACTCCAAATAATGCATTCCAATTCAA 59.450 33.333 16.86 0.00 0.00 2.69
1366 1438 6.608405 TCTCACTCCAAATAATGCATTCCAAT 59.392 34.615 16.86 0.64 0.00 3.16
1369 1441 6.319658 TCTTCTCACTCCAAATAATGCATTCC 59.680 38.462 16.86 0.00 0.00 3.01
1424 1496 0.541063 TAACTCTGACAGCCCCACGA 60.541 55.000 0.00 0.00 0.00 4.35
1490 1562 2.977914 TCTGCTCAAGCCAGTATTCAC 58.022 47.619 0.00 0.00 41.18 3.18
2227 2313 6.331369 ACTTGACACTATGAAATTGTTGGG 57.669 37.500 0.00 0.00 27.15 4.12
2299 2414 7.576477 GCTTTAAGAGAGAAAATTGCATCAGGT 60.576 37.037 0.00 0.00 0.00 4.00
2309 2426 9.905171 GTTCATTCTTGCTTTAAGAGAGAAAAT 57.095 29.630 12.13 0.00 45.66 1.82
2327 2444 8.859236 TCTGAATTCTGATTTCTGTTCATTCT 57.141 30.769 10.68 0.00 0.00 2.40
2402 2519 5.686159 AGAATGCTTGTTTCTCACTTCAG 57.314 39.130 0.00 0.00 0.00 3.02
2477 3455 7.972277 ACTGATGATAAACAGCAATCAAATGAC 59.028 33.333 0.00 0.00 44.38 3.06
2497 3492 4.442375 AGAACCGTGACTAAGACTGATG 57.558 45.455 0.00 0.00 0.00 3.07
2553 3548 6.455360 AAATACCATGGTCATGATCACAAC 57.545 37.500 23.76 0.00 41.20 3.32
2823 3938 3.572584 GAACAGCTCCAAGCAAAATGAG 58.427 45.455 1.29 0.00 45.56 2.90
2862 3977 1.134128 TCCAAGCTTCTGCAAGTGTGA 60.134 47.619 0.00 0.00 42.74 3.58
2866 3981 2.104792 TGTACTCCAAGCTTCTGCAAGT 59.895 45.455 0.00 0.00 42.74 3.16
3046 4166 5.170021 TGACTCCAATTGCAACAATTATGC 58.830 37.500 0.00 8.14 44.08 3.14
3100 4221 9.268255 CGCGACTGTAAATTTTTAACATATGAA 57.732 29.630 10.38 0.00 0.00 2.57
3130 4251 9.401058 CTTGTAGGAATAAGAAGGTGATCAATT 57.599 33.333 0.00 0.00 0.00 2.32
3288 4409 2.905075 TGGCCAGTAACTTCATCATCG 58.095 47.619 0.00 0.00 0.00 3.84
3346 4472 9.691362 GTTTCCTGATTAAGCATGAAAAGTTAA 57.309 29.630 20.76 1.31 0.00 2.01
3386 4512 6.996879 AGCTTTGCAGTGAATATATGTCATCT 59.003 34.615 0.00 0.00 0.00 2.90
3483 4610 9.868277 AAGTTTTTAGTTGAATGTTTGACATGA 57.132 25.926 0.00 0.00 37.97 3.07
3512 4639 4.780815 TGGAACCTTGCCTACTATGAATG 58.219 43.478 0.00 0.00 0.00 2.67
3551 4678 5.627367 CGAAAGCGTGAAAACCATGATTTTA 59.373 36.000 0.00 0.00 46.69 1.52
3580 4752 1.614413 CTAGCAATAGTCCGGGTCCTC 59.386 57.143 0.00 0.00 0.00 3.71
3679 4854 9.520204 CACCTGATAAAAATCGAGCATAAAAAT 57.480 29.630 0.00 0.00 0.00 1.82
3690 4865 8.251750 TCTTGTACTTCACCTGATAAAAATCG 57.748 34.615 0.00 0.00 0.00 3.34
3872 5047 6.324819 ACTTGTCACATCAAAGAAACAACAG 58.675 36.000 0.00 0.00 0.00 3.16
3914 5089 6.430308 GTCGATCTGTATAATGTACTCCCTCA 59.570 42.308 0.00 0.00 0.00 3.86
3965 5222 4.137116 TCACCACCTATATGTTGACTGC 57.863 45.455 0.00 0.00 0.00 4.40
4143 5400 0.325933 CTGCAGGTGATTGGTCCAGA 59.674 55.000 5.57 0.00 0.00 3.86
5560 6924 1.833630 AGATGAAGATGCGAGTCCCAA 59.166 47.619 0.00 0.00 0.00 4.12
5641 7005 3.990959 AGAGAACAAGGGAGGTTCATC 57.009 47.619 7.87 3.36 45.45 2.92
5908 7273 4.884164 GTCATAATCAGGGGAAAACAGGAG 59.116 45.833 0.00 0.00 0.00 3.69
6609 8041 1.336125 AGAAGCTTGCTGCAAGTTGAC 59.664 47.619 34.88 26.74 42.77 3.18
6986 8418 6.039047 CAGGTAGCAGCATTGATTTACAGATT 59.961 38.462 0.00 0.00 0.00 2.40
7156 8588 4.120331 ATTGCGCCGCTGGAAAGC 62.120 61.111 11.67 1.98 0.00 3.51
7168 8600 1.920574 CGGAGTTCTACAGTGATTGCG 59.079 52.381 0.00 0.00 0.00 4.85
7241 8673 1.378514 CCATCGTCCACCAAAGGGG 60.379 63.158 0.00 0.00 44.81 4.79
7242 8674 0.251165 AACCATCGTCCACCAAAGGG 60.251 55.000 0.00 0.00 41.29 3.95
7286 8718 7.620806 GCATATATTTAAGTACTTTCGACGGGC 60.621 40.741 14.49 6.08 0.00 6.13
7289 8721 7.597743 AGGGCATATATTTAAGTACTTTCGACG 59.402 37.037 14.49 0.00 0.00 5.12
7323 8767 4.170468 ACTGAATTCTTGAACCACCTGT 57.830 40.909 7.05 0.00 0.00 4.00
7437 8881 0.992431 AGCTGGCATCCTCCCTGATT 60.992 55.000 0.00 0.00 0.00 2.57
7589 9033 0.107654 CTTGAGATTGGGACCGGGAC 60.108 60.000 6.32 0.00 0.00 4.46
7590 9034 0.546747 ACTTGAGATTGGGACCGGGA 60.547 55.000 6.32 0.00 0.00 5.14
7600 9044 2.800544 CGTCAACGAACCACTTGAGATT 59.199 45.455 0.00 0.00 43.02 2.40
7601 9045 2.223971 ACGTCAACGAACCACTTGAGAT 60.224 45.455 9.88 0.00 43.02 2.75
7631 9075 1.825285 CGGCAGAGGAATCAATCGCG 61.825 60.000 0.00 0.00 0.00 5.87
7668 9112 1.396301 GAGAAACAAGGATGAGCAGCG 59.604 52.381 0.00 0.00 0.00 5.18
7680 9124 4.188462 ACGTGAGAACACATGAGAAACAA 58.812 39.130 0.00 0.00 46.20 2.83
7707 9151 4.319766 CCAAACGAACTTTGATCCAGACAG 60.320 45.833 0.00 0.00 41.81 3.51
7714 9158 4.537015 CAAGGACCAAACGAACTTTGATC 58.463 43.478 0.00 0.00 41.81 2.92
7715 9159 3.243401 GCAAGGACCAAACGAACTTTGAT 60.243 43.478 0.00 0.00 41.81 2.57
7716 9160 2.098443 GCAAGGACCAAACGAACTTTGA 59.902 45.455 0.00 0.00 41.81 2.69
7717 9161 2.099098 AGCAAGGACCAAACGAACTTTG 59.901 45.455 0.00 0.00 39.31 2.77
7718 9162 2.357952 GAGCAAGGACCAAACGAACTTT 59.642 45.455 0.00 0.00 0.00 2.66
7741 9186 1.434555 CCCAACAACAATGCATGCAG 58.565 50.000 26.69 15.79 0.00 4.41
7747 9192 1.004679 CAGCCCCCAACAACAATGC 60.005 57.895 0.00 0.00 0.00 3.56
7751 9196 1.456705 GAACCAGCCCCCAACAACA 60.457 57.895 0.00 0.00 0.00 3.33
7780 9225 2.530151 AGGGGCAGTCAGGCAAGA 60.530 61.111 0.00 0.00 46.44 3.02
7911 9365 1.656095 GTCAATCTCGAAACTCCGCAG 59.344 52.381 0.00 0.00 0.00 5.18
7930 9452 2.742053 CCATGGAAACTGTCGATTTCGT 59.258 45.455 5.56 0.00 37.00 3.85
8017 9542 2.046314 CCCCAACAGATTCGGCGT 60.046 61.111 6.85 0.00 0.00 5.68
8048 9573 3.065371 CACCGATTTTGCTATCCCAACTC 59.935 47.826 0.00 0.00 0.00 3.01
8083 9608 0.602905 CGGCGACAGGAGGAAACTTT 60.603 55.000 0.00 0.00 44.43 2.66
8130 9655 5.305585 TCGCCAATCCAGATCCTAAATTAC 58.694 41.667 0.00 0.00 0.00 1.89
8187 9719 4.180817 AGAAGAAAAGCAAAACCAAACCG 58.819 39.130 0.00 0.00 0.00 4.44
8298 9832 9.856488 ACGGACATAATGCTACTACTAATAATG 57.144 33.333 0.00 0.00 0.00 1.90
8313 9847 7.376866 GTCTTGCATTTTGATACGGACATAATG 59.623 37.037 13.04 13.04 38.61 1.90
8318 9852 4.068599 TGTCTTGCATTTTGATACGGACA 58.931 39.130 0.00 0.00 0.00 4.02
8319 9853 4.678509 TGTCTTGCATTTTGATACGGAC 57.321 40.909 0.00 0.00 0.00 4.79
8334 9868 8.784043 ACTAAACTAGGCTACAAAAATGTCTTG 58.216 33.333 0.00 0.00 0.00 3.02
8389 9923 2.817844 ACGGTCCAAAAGCACTATTTCC 59.182 45.455 0.00 0.00 0.00 3.13
8392 9926 2.073816 CGACGGTCCAAAAGCACTATT 58.926 47.619 1.91 0.00 0.00 1.73
8398 9932 2.332654 ATGGCGACGGTCCAAAAGC 61.333 57.895 1.91 0.00 37.13 3.51
8405 9939 3.299340 AATCTATACATGGCGACGGTC 57.701 47.619 0.00 0.00 0.00 4.79
8502 10036 1.566018 GGACGGGTGCAACTTCTTCG 61.566 60.000 0.00 0.00 36.74 3.79
8503 10037 1.235281 GGGACGGGTGCAACTTCTTC 61.235 60.000 0.00 0.00 36.74 2.87
8515 10049 2.361104 CAACATGTGGGGGACGGG 60.361 66.667 0.00 0.00 0.00 5.28
8516 10050 3.061848 GCAACATGTGGGGGACGG 61.062 66.667 0.00 0.00 0.00 4.79
8535 10069 3.638160 AGCCAACAATTTGACATGACAGT 59.362 39.130 0.00 0.00 34.24 3.55
8551 10085 0.250338 AAGTCGAAGGACCAGCCAAC 60.250 55.000 0.00 0.00 44.54 3.77
8556 10090 2.289694 ACAATCCAAGTCGAAGGACCAG 60.290 50.000 4.80 1.90 44.54 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.