Multiple sequence alignment - TraesCS7A01G106100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G106100 chr7A 100.000 3434 0 0 1 3434 64590087 64593520 0.000000e+00 6342.0
1 TraesCS7A01G106100 chr7A 96.163 2450 75 10 693 3140 64532168 64529736 0.000000e+00 3986.0
2 TraesCS7A01G106100 chr7A 94.911 393 18 1 1 391 64566496 64566888 6.300000e-172 614.0
3 TraesCS7A01G106100 chr7A 94.751 381 20 0 11 391 573101567 573101947 8.210000e-166 593.0
4 TraesCS7A01G106100 chr7B 92.617 1788 101 17 918 2685 2749054 2750830 0.000000e+00 2542.0
5 TraesCS7A01G106100 chr7B 90.281 1317 106 3 1121 2437 2663086 2664380 0.000000e+00 1703.0
6 TraesCS7A01G106100 chr7B 87.149 249 28 4 2738 2985 2757277 2757522 2.610000e-71 279.0
7 TraesCS7A01G106100 chr7B 85.036 274 30 7 859 1122 2660793 2661065 5.650000e-68 268.0
8 TraesCS7A01G106100 chr7B 96.875 32 0 1 2721 2752 204688209 204688239 6.000000e-03 52.8
9 TraesCS7A01G106100 chr7D 94.259 1585 80 9 865 2441 60148223 60146642 0.000000e+00 2412.0
10 TraesCS7A01G106100 chr7D 89.381 678 65 4 1823 2500 60234619 60235289 0.000000e+00 846.0
11 TraesCS7A01G106100 chr7D 93.286 283 15 3 394 672 60148713 60148431 6.860000e-112 414.0
12 TraesCS7A01G106100 chr7D 90.878 296 23 4 3140 3433 373243828 373243535 8.930000e-106 394.0
13 TraesCS7A01G106100 chr7D 89.706 136 10 3 2759 2890 60235524 60235659 1.640000e-38 171.0
14 TraesCS7A01G106100 chr7D 93.976 83 4 1 726 807 60148329 60148247 1.290000e-24 124.0
15 TraesCS7A01G106100 chr7D 78.723 141 14 8 2624 2751 596958307 596958444 2.840000e-11 80.5
16 TraesCS7A01G106100 chr7D 97.059 34 1 0 2954 2987 42634733 42634700 1.330000e-04 58.4
17 TraesCS7A01G106100 chr2A 95.153 392 16 3 1 391 218831279 218831668 1.750000e-172 616.0
18 TraesCS7A01G106100 chr2A 94.898 392 17 3 1 391 218839828 218840217 8.150000e-171 610.0
19 TraesCS7A01G106100 chr6A 94.488 381 21 0 11 391 7413069 7412689 3.820000e-164 588.0
20 TraesCS7A01G106100 chr6A 93.862 391 22 2 1 391 129392753 129392365 3.820000e-164 588.0
21 TraesCS7A01G106100 chr6A 88.926 298 31 2 3137 3434 473579032 473578737 1.950000e-97 366.0
22 TraesCS7A01G106100 chr4B 94.488 381 21 0 11 391 101576060 101575680 3.820000e-164 588.0
23 TraesCS7A01G106100 chr4B 94.488 381 21 0 11 391 294406717 294407097 3.820000e-164 588.0
24 TraesCS7A01G106100 chr1B 94.503 382 20 1 11 391 631391755 631391374 3.820000e-164 588.0
25 TraesCS7A01G106100 chr1B 79.286 140 19 7 2624 2757 460580597 460580462 4.720000e-14 89.8
26 TraesCS7A01G106100 chr1D 90.698 301 25 3 3136 3434 457067455 457067754 6.910000e-107 398.0
27 TraesCS7A01G106100 chr1D 82.569 109 13 4 2653 2757 343363664 343363558 1.310000e-14 91.6
28 TraesCS7A01G106100 chr3D 90.203 296 24 4 3140 3434 50542649 50542358 6.950000e-102 381.0
29 TraesCS7A01G106100 chr3D 89.761 293 25 2 1291 1583 376810571 376810858 1.510000e-98 370.0
30 TraesCS7A01G106100 chr2D 89.667 300 24 4 3140 3434 86525255 86524958 3.240000e-100 375.0
31 TraesCS7A01G106100 chr2D 88.926 298 30 3 3138 3434 7276584 7276289 7.000000e-97 364.0
32 TraesCS7A01G106100 chr2D 92.222 90 7 0 1295 1384 35548415 35548326 1.000000e-25 128.0
33 TraesCS7A01G106100 chr6D 89.298 299 29 3 3137 3433 472502668 472502965 4.190000e-99 372.0
34 TraesCS7A01G106100 chr6D 88.435 294 31 3 3140 3431 75889497 75889789 5.450000e-93 351.0
35 TraesCS7A01G106100 chr3A 88.333 300 31 3 3138 3434 608827547 608827845 1.170000e-94 357.0
36 TraesCS7A01G106100 chr2B 89.394 198 21 0 1239 1436 172889529 172889726 2.050000e-62 250.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G106100 chr7A 64590087 64593520 3433 False 6342.000000 6342 100.000000 1 3434 1 chr7A.!!$F2 3433
1 TraesCS7A01G106100 chr7A 64529736 64532168 2432 True 3986.000000 3986 96.163000 693 3140 1 chr7A.!!$R1 2447
2 TraesCS7A01G106100 chr7B 2749054 2750830 1776 False 2542.000000 2542 92.617000 918 2685 1 chr7B.!!$F1 1767
3 TraesCS7A01G106100 chr7B 2660793 2664380 3587 False 985.500000 1703 87.658500 859 2437 2 chr7B.!!$F4 1578
4 TraesCS7A01G106100 chr7D 60146642 60148713 2071 True 983.333333 2412 93.840333 394 2441 3 chr7D.!!$R3 2047
5 TraesCS7A01G106100 chr7D 60234619 60235659 1040 False 508.500000 846 89.543500 1823 2890 2 chr7D.!!$F2 1067

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
67 68 0.105964 TAAGGGATGACGGCCGATTG 59.894 55.0 35.9 1.98 0.0 2.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2651 4781 5.87481 GTGTAGGTTGAAGATGAATAGTGCA 59.125 40.0 0.0 0.0 0.0 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.953686 TCCAAGCCTTTTTCTTGACCG 59.046 47.619 4.48 0.00 42.52 4.79
22 23 1.000274 CCAAGCCTTTTTCTTGACCGG 60.000 52.381 0.00 0.00 42.52 5.28
23 24 1.000274 CAAGCCTTTTTCTTGACCGGG 60.000 52.381 6.32 0.00 42.52 5.73
24 25 0.476771 AGCCTTTTTCTTGACCGGGA 59.523 50.000 6.32 0.00 0.00 5.14
25 26 1.133606 AGCCTTTTTCTTGACCGGGAA 60.134 47.619 6.32 0.00 0.00 3.97
26 27 1.269723 GCCTTTTTCTTGACCGGGAAG 59.730 52.381 6.32 7.86 0.00 3.46
27 28 2.583143 CCTTTTTCTTGACCGGGAAGT 58.417 47.619 6.32 0.00 0.00 3.01
28 29 2.552743 CCTTTTTCTTGACCGGGAAGTC 59.447 50.000 6.32 0.00 37.28 3.01
29 30 2.265589 TTTTCTTGACCGGGAAGTCC 57.734 50.000 6.32 0.00 35.83 3.85
30 31 1.133363 TTTCTTGACCGGGAAGTCCA 58.867 50.000 6.32 0.00 35.83 4.02
31 32 0.685097 TTCTTGACCGGGAAGTCCAG 59.315 55.000 6.32 0.00 35.83 3.86
32 33 1.376037 CTTGACCGGGAAGTCCAGC 60.376 63.158 6.32 0.00 35.83 4.85
33 34 2.804828 CTTGACCGGGAAGTCCAGCC 62.805 65.000 6.32 0.00 35.83 4.85
34 35 4.452733 GACCGGGAAGTCCAGCCG 62.453 72.222 6.32 0.00 37.91 5.52
38 39 4.475135 GGGAAGTCCAGCCGCCTC 62.475 72.222 0.00 0.00 37.91 4.70
39 40 3.394836 GGAAGTCCAGCCGCCTCT 61.395 66.667 0.00 0.00 35.64 3.69
40 41 2.665603 GAAGTCCAGCCGCCTCTT 59.334 61.111 0.00 0.00 0.00 2.85
41 42 1.614241 GGAAGTCCAGCCGCCTCTTA 61.614 60.000 0.00 0.00 35.64 2.10
42 43 0.466124 GAAGTCCAGCCGCCTCTTAT 59.534 55.000 0.00 0.00 0.00 1.73
43 44 1.687123 GAAGTCCAGCCGCCTCTTATA 59.313 52.381 0.00 0.00 0.00 0.98
44 45 2.016905 AGTCCAGCCGCCTCTTATAT 57.983 50.000 0.00 0.00 0.00 0.86
45 46 3.170991 AGTCCAGCCGCCTCTTATATA 57.829 47.619 0.00 0.00 0.00 0.86
46 47 2.826725 AGTCCAGCCGCCTCTTATATAC 59.173 50.000 0.00 0.00 0.00 1.47
47 48 2.094130 GTCCAGCCGCCTCTTATATACC 60.094 54.545 0.00 0.00 0.00 2.73
48 49 2.180276 CCAGCCGCCTCTTATATACCT 58.820 52.381 0.00 0.00 0.00 3.08
49 50 3.010920 TCCAGCCGCCTCTTATATACCTA 59.989 47.826 0.00 0.00 0.00 3.08
50 51 3.767673 CCAGCCGCCTCTTATATACCTAA 59.232 47.826 0.00 0.00 0.00 2.69
51 52 4.142138 CCAGCCGCCTCTTATATACCTAAG 60.142 50.000 0.00 0.00 0.00 2.18
52 53 4.024670 AGCCGCCTCTTATATACCTAAGG 58.975 47.826 0.00 0.00 31.02 2.69
53 54 3.132467 GCCGCCTCTTATATACCTAAGGG 59.868 52.174 0.00 0.00 38.88 3.95
54 55 4.607239 CCGCCTCTTATATACCTAAGGGA 58.393 47.826 0.00 0.00 31.91 4.20
55 56 5.209659 CCGCCTCTTATATACCTAAGGGAT 58.790 45.833 0.00 0.00 31.91 3.85
56 57 5.069251 CCGCCTCTTATATACCTAAGGGATG 59.931 48.000 0.00 0.00 31.91 3.51
57 58 5.892119 CGCCTCTTATATACCTAAGGGATGA 59.108 44.000 0.00 0.00 31.91 2.92
58 59 6.183360 CGCCTCTTATATACCTAAGGGATGAC 60.183 46.154 0.00 0.00 31.91 3.06
59 60 6.183360 GCCTCTTATATACCTAAGGGATGACG 60.183 46.154 0.00 0.00 31.91 4.35
60 61 6.321690 CCTCTTATATACCTAAGGGATGACGG 59.678 46.154 0.00 0.00 31.91 4.79
61 62 5.655532 TCTTATATACCTAAGGGATGACGGC 59.344 44.000 0.00 0.00 36.25 5.68
62 63 1.349067 ATACCTAAGGGATGACGGCC 58.651 55.000 0.00 0.00 36.25 6.13
63 64 1.111116 TACCTAAGGGATGACGGCCG 61.111 60.000 26.86 26.86 36.25 6.13
64 65 2.131709 CCTAAGGGATGACGGCCGA 61.132 63.158 35.90 11.57 33.58 5.54
65 66 1.472662 CCTAAGGGATGACGGCCGAT 61.473 60.000 35.90 17.02 33.58 4.18
66 67 0.393077 CTAAGGGATGACGGCCGATT 59.607 55.000 35.90 16.07 0.00 3.34
67 68 0.105964 TAAGGGATGACGGCCGATTG 59.894 55.000 35.90 1.98 0.00 2.67
68 69 1.622607 AAGGGATGACGGCCGATTGA 61.623 55.000 35.90 12.60 0.00 2.57
69 70 1.153249 GGGATGACGGCCGATTGAA 60.153 57.895 35.90 12.39 0.00 2.69
70 71 1.436983 GGGATGACGGCCGATTGAAC 61.437 60.000 35.90 16.57 0.00 3.18
71 72 0.742990 GGATGACGGCCGATTGAACA 60.743 55.000 35.90 20.08 0.00 3.18
72 73 1.083489 GATGACGGCCGATTGAACAA 58.917 50.000 35.90 7.72 0.00 2.83
73 74 0.802494 ATGACGGCCGATTGAACAAC 59.198 50.000 35.90 11.03 0.00 3.32
74 75 0.533085 TGACGGCCGATTGAACAACA 60.533 50.000 35.90 13.41 0.00 3.33
75 76 0.110373 GACGGCCGATTGAACAACAC 60.110 55.000 35.90 4.01 0.00 3.32
76 77 0.816018 ACGGCCGATTGAACAACACA 60.816 50.000 35.90 0.00 0.00 3.72
77 78 0.385473 CGGCCGATTGAACAACACAC 60.385 55.000 24.07 0.00 0.00 3.82
78 79 0.665835 GGCCGATTGAACAACACACA 59.334 50.000 0.00 0.00 0.00 3.72
79 80 1.066303 GGCCGATTGAACAACACACAA 59.934 47.619 0.00 0.00 0.00 3.33
80 81 2.288152 GGCCGATTGAACAACACACAAT 60.288 45.455 0.00 0.00 37.03 2.71
81 82 2.979813 GCCGATTGAACAACACACAATC 59.020 45.455 0.00 0.00 43.33 2.67
85 86 5.789774 GATTGAACAACACACAATCGAAC 57.210 39.130 0.00 0.00 39.84 3.95
86 87 4.955925 TTGAACAACACACAATCGAACT 57.044 36.364 0.00 0.00 0.00 3.01
87 88 6.612247 ATTGAACAACACACAATCGAACTA 57.388 33.333 0.00 0.00 29.89 2.24
88 89 6.424176 TTGAACAACACACAATCGAACTAA 57.576 33.333 0.00 0.00 0.00 2.24
89 90 6.612247 TGAACAACACACAATCGAACTAAT 57.388 33.333 0.00 0.00 0.00 1.73
90 91 6.655062 TGAACAACACACAATCGAACTAATC 58.345 36.000 0.00 0.00 0.00 1.75
91 92 6.258947 TGAACAACACACAATCGAACTAATCA 59.741 34.615 0.00 0.00 0.00 2.57
92 93 6.612247 ACAACACACAATCGAACTAATCAA 57.388 33.333 0.00 0.00 0.00 2.57
93 94 7.202016 ACAACACACAATCGAACTAATCAAT 57.798 32.000 0.00 0.00 0.00 2.57
94 95 8.317891 ACAACACACAATCGAACTAATCAATA 57.682 30.769 0.00 0.00 0.00 1.90
95 96 8.946085 ACAACACACAATCGAACTAATCAATAT 58.054 29.630 0.00 0.00 0.00 1.28
98 99 9.817809 ACACACAATCGAACTAATCAATATAGT 57.182 29.630 0.00 0.00 35.15 2.12
125 126 9.152595 ACTTTTTCATCTACGTTTTATCTCTCC 57.847 33.333 0.00 0.00 0.00 3.71
126 127 9.151471 CTTTTTCATCTACGTTTTATCTCTCCA 57.849 33.333 0.00 0.00 0.00 3.86
127 128 8.475331 TTTTCATCTACGTTTTATCTCTCCAC 57.525 34.615 0.00 0.00 0.00 4.02
128 129 6.145338 TCATCTACGTTTTATCTCTCCACC 57.855 41.667 0.00 0.00 0.00 4.61
129 130 4.627611 TCTACGTTTTATCTCTCCACCG 57.372 45.455 0.00 0.00 0.00 4.94
130 131 4.012374 TCTACGTTTTATCTCTCCACCGT 58.988 43.478 0.00 0.00 0.00 4.83
131 132 3.672767 ACGTTTTATCTCTCCACCGTT 57.327 42.857 0.00 0.00 0.00 4.44
132 133 3.999046 ACGTTTTATCTCTCCACCGTTT 58.001 40.909 0.00 0.00 0.00 3.60
133 134 4.383173 ACGTTTTATCTCTCCACCGTTTT 58.617 39.130 0.00 0.00 0.00 2.43
134 135 4.818005 ACGTTTTATCTCTCCACCGTTTTT 59.182 37.500 0.00 0.00 0.00 1.94
135 136 5.049886 ACGTTTTATCTCTCCACCGTTTTTC 60.050 40.000 0.00 0.00 0.00 2.29
136 137 5.178809 CGTTTTATCTCTCCACCGTTTTTCT 59.821 40.000 0.00 0.00 0.00 2.52
137 138 6.600350 GTTTTATCTCTCCACCGTTTTTCTC 58.400 40.000 0.00 0.00 0.00 2.87
138 139 5.740290 TTATCTCTCCACCGTTTTTCTCT 57.260 39.130 0.00 0.00 0.00 3.10
139 140 3.662247 TCTCTCCACCGTTTTTCTCTC 57.338 47.619 0.00 0.00 0.00 3.20
140 141 3.231818 TCTCTCCACCGTTTTTCTCTCT 58.768 45.455 0.00 0.00 0.00 3.10
141 142 3.256136 TCTCTCCACCGTTTTTCTCTCTC 59.744 47.826 0.00 0.00 0.00 3.20
142 143 2.030185 TCTCCACCGTTTTTCTCTCTCG 60.030 50.000 0.00 0.00 0.00 4.04
143 144 1.684983 TCCACCGTTTTTCTCTCTCGT 59.315 47.619 0.00 0.00 0.00 4.18
144 145 2.101917 TCCACCGTTTTTCTCTCTCGTT 59.898 45.455 0.00 0.00 0.00 3.85
145 146 2.475487 CCACCGTTTTTCTCTCTCGTTC 59.525 50.000 0.00 0.00 0.00 3.95
146 147 3.381949 CACCGTTTTTCTCTCTCGTTCT 58.618 45.455 0.00 0.00 0.00 3.01
147 148 3.802685 CACCGTTTTTCTCTCTCGTTCTT 59.197 43.478 0.00 0.00 0.00 2.52
148 149 4.049869 ACCGTTTTTCTCTCTCGTTCTTC 58.950 43.478 0.00 0.00 0.00 2.87
149 150 3.119792 CCGTTTTTCTCTCTCGTTCTTCG 59.880 47.826 0.00 0.00 41.41 3.79
150 151 3.420672 CGTTTTTCTCTCTCGTTCTTCGC 60.421 47.826 0.00 0.00 39.67 4.70
151 152 3.644884 TTTTCTCTCTCGTTCTTCGCT 57.355 42.857 0.00 0.00 39.67 4.93
152 153 2.620779 TTCTCTCTCGTTCTTCGCTG 57.379 50.000 0.00 0.00 39.67 5.18
153 154 1.524848 TCTCTCTCGTTCTTCGCTGT 58.475 50.000 0.00 0.00 39.67 4.40
154 155 1.880675 TCTCTCTCGTTCTTCGCTGTT 59.119 47.619 0.00 0.00 39.67 3.16
155 156 2.095668 TCTCTCTCGTTCTTCGCTGTTC 60.096 50.000 0.00 0.00 39.67 3.18
156 157 1.880675 TCTCTCGTTCTTCGCTGTTCT 59.119 47.619 0.00 0.00 39.67 3.01
157 158 2.293677 TCTCTCGTTCTTCGCTGTTCTT 59.706 45.455 0.00 0.00 39.67 2.52
158 159 2.659279 CTCTCGTTCTTCGCTGTTCTTC 59.341 50.000 0.00 0.00 39.67 2.87
159 160 1.383744 CTCGTTCTTCGCTGTTCTTCG 59.616 52.381 0.00 0.00 39.67 3.79
160 161 1.129326 CGTTCTTCGCTGTTCTTCGT 58.871 50.000 0.00 0.00 0.00 3.85
161 162 1.136884 CGTTCTTCGCTGTTCTTCGTG 60.137 52.381 0.00 0.00 0.00 4.35
162 163 1.859080 GTTCTTCGCTGTTCTTCGTGT 59.141 47.619 0.00 0.00 0.00 4.49
163 164 2.218953 TCTTCGCTGTTCTTCGTGTT 57.781 45.000 0.00 0.00 0.00 3.32
164 165 2.546778 TCTTCGCTGTTCTTCGTGTTT 58.453 42.857 0.00 0.00 0.00 2.83
165 166 2.284150 TCTTCGCTGTTCTTCGTGTTTG 59.716 45.455 0.00 0.00 0.00 2.93
166 167 1.929230 TCGCTGTTCTTCGTGTTTGA 58.071 45.000 0.00 0.00 0.00 2.69
167 168 1.858458 TCGCTGTTCTTCGTGTTTGAG 59.142 47.619 0.00 0.00 0.00 3.02
168 169 1.858458 CGCTGTTCTTCGTGTTTGAGA 59.142 47.619 0.00 0.00 0.00 3.27
169 170 2.097202 CGCTGTTCTTCGTGTTTGAGAG 60.097 50.000 0.00 0.00 0.00 3.20
170 171 2.348966 GCTGTTCTTCGTGTTTGAGAGC 60.349 50.000 0.00 0.00 0.00 4.09
171 172 3.126831 CTGTTCTTCGTGTTTGAGAGCT 58.873 45.455 0.00 0.00 0.00 4.09
172 173 2.866156 TGTTCTTCGTGTTTGAGAGCTG 59.134 45.455 0.00 0.00 0.00 4.24
173 174 1.502231 TCTTCGTGTTTGAGAGCTGC 58.498 50.000 0.00 0.00 0.00 5.25
174 175 0.162507 CTTCGTGTTTGAGAGCTGCG 59.837 55.000 0.00 0.00 0.00 5.18
175 176 0.249280 TTCGTGTTTGAGAGCTGCGA 60.249 50.000 0.00 0.00 0.00 5.10
176 177 0.249280 TCGTGTTTGAGAGCTGCGAA 60.249 50.000 0.00 0.00 0.00 4.70
177 178 0.792640 CGTGTTTGAGAGCTGCGAAT 59.207 50.000 0.00 0.00 0.00 3.34
178 179 1.195448 CGTGTTTGAGAGCTGCGAATT 59.805 47.619 0.00 0.00 0.00 2.17
179 180 2.723010 CGTGTTTGAGAGCTGCGAATTC 60.723 50.000 0.00 0.00 0.00 2.17
180 181 1.806542 TGTTTGAGAGCTGCGAATTCC 59.193 47.619 0.00 0.00 0.00 3.01
181 182 1.078709 TTTGAGAGCTGCGAATTCCG 58.921 50.000 0.00 0.00 42.21 4.30
182 183 0.246360 TTGAGAGCTGCGAATTCCGA 59.754 50.000 0.00 0.00 41.76 4.55
183 184 0.179127 TGAGAGCTGCGAATTCCGAG 60.179 55.000 0.00 0.00 41.76 4.63
184 185 0.873743 GAGAGCTGCGAATTCCGAGG 60.874 60.000 0.00 0.00 41.76 4.63
185 186 2.512515 AGCTGCGAATTCCGAGGC 60.513 61.111 0.00 0.00 41.76 4.70
186 187 2.512515 GCTGCGAATTCCGAGGCT 60.513 61.111 0.00 0.00 41.76 4.58
187 188 2.529619 GCTGCGAATTCCGAGGCTC 61.530 63.158 3.87 3.87 41.76 4.70
188 189 1.142748 CTGCGAATTCCGAGGCTCT 59.857 57.895 13.50 0.00 41.76 4.09
189 190 0.385751 CTGCGAATTCCGAGGCTCTA 59.614 55.000 13.50 0.00 41.76 2.43
190 191 0.385751 TGCGAATTCCGAGGCTCTAG 59.614 55.000 13.50 3.93 41.76 2.43
191 192 0.319125 GCGAATTCCGAGGCTCTAGG 60.319 60.000 13.50 7.54 41.76 3.02
192 193 0.315568 CGAATTCCGAGGCTCTAGGG 59.684 60.000 13.50 6.77 41.76 3.53
193 194 0.682292 GAATTCCGAGGCTCTAGGGG 59.318 60.000 13.50 6.38 0.00 4.79
194 195 1.411651 AATTCCGAGGCTCTAGGGGC 61.412 60.000 8.43 8.43 0.00 5.80
195 196 4.896829 TCCGAGGCTCTAGGGGCG 62.897 72.222 11.03 0.00 36.85 6.13
196 197 4.896829 CCGAGGCTCTAGGGGCGA 62.897 72.222 11.03 0.00 36.85 5.54
197 198 3.291383 CGAGGCTCTAGGGGCGAG 61.291 72.222 11.03 5.00 36.85 5.03
201 202 3.528370 GCTCTAGGGGCGAGCGAA 61.528 66.667 0.00 0.00 43.69 4.70
202 203 2.862223 GCTCTAGGGGCGAGCGAAT 61.862 63.158 0.00 0.00 43.69 3.34
203 204 1.287503 CTCTAGGGGCGAGCGAATC 59.712 63.158 0.00 0.00 0.00 2.52
213 214 1.007154 GAGCGAATCGACCTAGGGC 60.007 63.158 14.81 9.80 0.00 5.19
214 215 1.735376 GAGCGAATCGACCTAGGGCA 61.735 60.000 16.92 1.81 0.00 5.36
215 216 1.300233 GCGAATCGACCTAGGGCAG 60.300 63.158 16.92 7.84 0.00 4.85
216 217 1.300233 CGAATCGACCTAGGGCAGC 60.300 63.158 16.92 0.00 0.00 5.25
217 218 1.069935 GAATCGACCTAGGGCAGCC 59.930 63.158 16.92 1.26 0.00 4.85
218 219 2.384653 GAATCGACCTAGGGCAGCCC 62.385 65.000 24.90 24.90 45.90 5.19
265 266 4.585216 TCCCGAGGGTGTGGGGTT 62.585 66.667 8.20 0.00 44.79 4.11
266 267 3.576259 CCCGAGGGTGTGGGGTTT 61.576 66.667 0.00 0.00 42.05 3.27
267 268 2.518933 CCGAGGGTGTGGGGTTTT 59.481 61.111 0.00 0.00 0.00 2.43
268 269 1.602605 CCGAGGGTGTGGGGTTTTC 60.603 63.158 0.00 0.00 0.00 2.29
269 270 1.149627 CGAGGGTGTGGGGTTTTCA 59.850 57.895 0.00 0.00 0.00 2.69
270 271 0.889186 CGAGGGTGTGGGGTTTTCAG 60.889 60.000 0.00 0.00 0.00 3.02
271 272 0.539669 GAGGGTGTGGGGTTTTCAGG 60.540 60.000 0.00 0.00 0.00 3.86
272 273 1.231928 GGGTGTGGGGTTTTCAGGT 59.768 57.895 0.00 0.00 0.00 4.00
273 274 0.826256 GGGTGTGGGGTTTTCAGGTC 60.826 60.000 0.00 0.00 0.00 3.85
274 275 0.185175 GGTGTGGGGTTTTCAGGTCT 59.815 55.000 0.00 0.00 0.00 3.85
275 276 1.422402 GGTGTGGGGTTTTCAGGTCTA 59.578 52.381 0.00 0.00 0.00 2.59
276 277 2.501261 GTGTGGGGTTTTCAGGTCTAC 58.499 52.381 0.00 0.00 0.00 2.59
277 278 2.128535 TGTGGGGTTTTCAGGTCTACA 58.871 47.619 0.00 0.00 0.00 2.74
278 279 2.510382 TGTGGGGTTTTCAGGTCTACAA 59.490 45.455 0.00 0.00 0.00 2.41
279 280 3.053544 TGTGGGGTTTTCAGGTCTACAAA 60.054 43.478 0.00 0.00 0.00 2.83
280 281 3.955551 GTGGGGTTTTCAGGTCTACAAAA 59.044 43.478 0.00 0.00 0.00 2.44
281 282 4.037565 GTGGGGTTTTCAGGTCTACAAAAG 59.962 45.833 0.00 0.00 0.00 2.27
282 283 3.005472 GGGGTTTTCAGGTCTACAAAAGC 59.995 47.826 0.00 0.00 36.97 3.51
283 284 3.304458 GGGTTTTCAGGTCTACAAAAGCG 60.304 47.826 0.00 0.00 38.04 4.68
284 285 3.297472 GTTTTCAGGTCTACAAAAGCGC 58.703 45.455 0.00 0.00 0.00 5.92
285 286 1.519408 TTCAGGTCTACAAAAGCGCC 58.481 50.000 2.29 0.00 0.00 6.53
286 287 0.321298 TCAGGTCTACAAAAGCGCCC 60.321 55.000 2.29 0.00 0.00 6.13
287 288 1.375523 AGGTCTACAAAAGCGCCCG 60.376 57.895 2.29 0.00 0.00 6.13
288 289 1.670083 GGTCTACAAAAGCGCCCGT 60.670 57.895 2.29 0.00 0.00 5.28
289 290 1.632948 GGTCTACAAAAGCGCCCGTC 61.633 60.000 2.29 0.00 0.00 4.79
290 291 1.735198 TCTACAAAAGCGCCCGTCG 60.735 57.895 2.29 0.00 42.12 5.12
291 292 1.735198 CTACAAAAGCGCCCGTCGA 60.735 57.895 2.29 0.00 41.67 4.20
292 293 1.952266 CTACAAAAGCGCCCGTCGAC 61.952 60.000 2.29 5.18 41.67 4.20
293 294 2.424705 TACAAAAGCGCCCGTCGACT 62.425 55.000 14.70 0.00 41.67 4.18
294 295 3.041940 AAAAGCGCCCGTCGACTG 61.042 61.111 14.70 7.04 41.67 3.51
295 296 3.802418 AAAAGCGCCCGTCGACTGT 62.802 57.895 14.70 0.00 41.67 3.55
296 297 4.719369 AAGCGCCCGTCGACTGTC 62.719 66.667 14.70 0.00 41.67 3.51
298 299 4.719369 GCGCCCGTCGACTGTCTT 62.719 66.667 14.70 0.00 41.67 3.01
299 300 2.805353 CGCCCGTCGACTGTCTTG 60.805 66.667 14.70 0.00 41.67 3.02
300 301 3.112709 GCCCGTCGACTGTCTTGC 61.113 66.667 14.70 2.09 0.00 4.01
301 302 2.805353 CCCGTCGACTGTCTTGCG 60.805 66.667 14.70 7.28 0.00 4.85
302 303 2.050351 CCGTCGACTGTCTTGCGT 60.050 61.111 14.70 0.00 0.00 5.24
303 304 1.208358 CCGTCGACTGTCTTGCGTA 59.792 57.895 14.70 0.00 0.00 4.42
304 305 0.179171 CCGTCGACTGTCTTGCGTAT 60.179 55.000 14.70 0.00 0.00 3.06
305 306 1.181001 CGTCGACTGTCTTGCGTATC 58.819 55.000 14.70 0.00 0.00 2.24
306 307 1.181001 GTCGACTGTCTTGCGTATCG 58.819 55.000 8.70 0.00 0.00 2.92
317 318 3.017314 CGTATCGCGCTGTCGGTC 61.017 66.667 5.56 0.00 35.95 4.79
318 319 3.017314 GTATCGCGCTGTCGGTCG 61.017 66.667 5.56 0.00 35.95 4.79
319 320 4.246206 TATCGCGCTGTCGGTCGG 62.246 66.667 5.56 0.00 35.95 4.79
324 325 4.477975 CGCTGTCGGTCGGGTCTC 62.478 72.222 0.00 0.00 0.00 3.36
325 326 4.131088 GCTGTCGGTCGGGTCTCC 62.131 72.222 0.00 0.00 0.00 3.71
326 327 2.361357 CTGTCGGTCGGGTCTCCT 60.361 66.667 0.00 0.00 0.00 3.69
327 328 1.977544 CTGTCGGTCGGGTCTCCTT 60.978 63.158 0.00 0.00 0.00 3.36
328 329 1.935327 CTGTCGGTCGGGTCTCCTTC 61.935 65.000 0.00 0.00 0.00 3.46
329 330 2.749044 TCGGTCGGGTCTCCTTCG 60.749 66.667 0.00 0.00 0.00 3.79
330 331 2.749044 CGGTCGGGTCTCCTTCGA 60.749 66.667 0.00 0.00 0.00 3.71
332 333 2.484203 GTCGGGTCTCCTTCGACG 59.516 66.667 0.00 0.00 42.60 5.12
333 334 2.033141 TCGGGTCTCCTTCGACGT 59.967 61.111 0.00 0.00 34.75 4.34
334 335 2.178521 CGGGTCTCCTTCGACGTG 59.821 66.667 0.00 0.00 34.75 4.49
335 336 2.330372 CGGGTCTCCTTCGACGTGA 61.330 63.158 0.00 0.00 34.75 4.35
336 337 1.507174 GGGTCTCCTTCGACGTGAG 59.493 63.158 0.00 0.00 34.75 3.51
337 338 1.153997 GGTCTCCTTCGACGTGAGC 60.154 63.158 0.00 0.00 34.75 4.26
338 339 1.587933 GGTCTCCTTCGACGTGAGCT 61.588 60.000 0.00 0.00 34.75 4.09
339 340 1.085091 GTCTCCTTCGACGTGAGCTA 58.915 55.000 0.00 0.00 0.00 3.32
340 341 1.085091 TCTCCTTCGACGTGAGCTAC 58.915 55.000 0.00 0.00 0.00 3.58
349 350 4.910956 GTGAGCTACGGTGCATCA 57.089 55.556 0.00 0.00 34.99 3.07
350 351 2.373938 GTGAGCTACGGTGCATCAC 58.626 57.895 0.00 0.00 35.63 3.06
359 360 2.261671 GTGCATCACCCTCGACGT 59.738 61.111 0.00 0.00 0.00 4.34
360 361 1.805945 GTGCATCACCCTCGACGTC 60.806 63.158 5.18 5.18 0.00 4.34
361 362 2.579787 GCATCACCCTCGACGTCG 60.580 66.667 31.30 31.30 41.45 5.12
371 372 3.863942 TCGACGTCGAAGATACACG 57.136 52.632 36.25 8.97 46.30 4.49
373 374 1.169408 CGACGTCGAAGATACACGTG 58.831 55.000 33.35 15.48 46.39 4.49
374 375 1.201845 CGACGTCGAAGATACACGTGA 60.202 52.381 33.35 6.34 46.39 4.35
375 376 2.164427 GACGTCGAAGATACACGTGAC 58.836 52.381 25.01 12.86 46.39 3.67
376 377 1.169408 CGTCGAAGATACACGTGACG 58.831 55.000 25.01 14.99 42.37 4.35
377 378 1.463034 CGTCGAAGATACACGTGACGT 60.463 52.381 25.01 4.10 42.87 4.34
398 399 5.907004 CGTGTTCGTGTGTCAATATTAACA 58.093 37.500 0.00 0.00 0.00 2.41
403 404 9.737427 TGTTCGTGTGTCAATATTAACATTTTT 57.263 25.926 0.00 0.00 0.00 1.94
437 438 2.608752 GGTCTGCTGCATTTTGTTCTGG 60.609 50.000 1.31 0.00 0.00 3.86
453 454 6.448369 TGTTCTGGTTATTATGGGGATAGG 57.552 41.667 0.00 0.00 0.00 2.57
454 455 5.312178 TGTTCTGGTTATTATGGGGATAGGG 59.688 44.000 0.00 0.00 0.00 3.53
530 532 7.555914 ACCTGTTTTTGCCATATTCTTTGTTTT 59.444 29.630 0.00 0.00 0.00 2.43
569 571 1.609208 CACCTGGTTTTGGACTCCAG 58.391 55.000 0.00 0.00 45.67 3.86
574 576 0.538287 GGTTTTGGACTCCAGCTGCT 60.538 55.000 8.66 0.00 33.81 4.24
587 589 1.004918 GCTGCTGGTACGTCAGGTT 60.005 57.895 6.41 0.00 35.43 3.50
590 592 2.868839 GCTGCTGGTACGTCAGGTTAAA 60.869 50.000 6.41 0.00 35.43 1.52
591 593 3.395639 CTGCTGGTACGTCAGGTTAAAA 58.604 45.455 6.41 0.00 35.43 1.52
603 605 4.062991 TCAGGTTAAAAACGAGGAGAAGC 58.937 43.478 0.00 0.00 0.00 3.86
672 674 0.669318 CGTGCCTCCGAGCTAAACAA 60.669 55.000 0.00 0.00 0.00 2.83
674 676 1.398390 GTGCCTCCGAGCTAAACAATG 59.602 52.381 0.00 0.00 0.00 2.82
681 745 1.398390 CGAGCTAAACAATGGGCACTC 59.602 52.381 0.00 0.00 0.00 3.51
682 746 1.745653 GAGCTAAACAATGGGCACTCC 59.254 52.381 0.00 0.00 0.00 3.85
744 808 4.735578 GCATTGTATTGGATGGCTTGTCAG 60.736 45.833 0.00 0.00 0.00 3.51
2512 4639 2.703007 GCCTCTCTCTCTCTCTCTCTCT 59.297 54.545 0.00 0.00 0.00 3.10
2513 4640 3.244044 GCCTCTCTCTCTCTCTCTCTCTC 60.244 56.522 0.00 0.00 0.00 3.20
2514 4641 4.222336 CCTCTCTCTCTCTCTCTCTCTCT 58.778 52.174 0.00 0.00 0.00 3.10
2515 4642 4.280677 CCTCTCTCTCTCTCTCTCTCTCTC 59.719 54.167 0.00 0.00 0.00 3.20
2516 4643 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
2517 4644 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2518 4645 4.871822 TCTCTCTCTCTCTCTCTCTCTCA 58.128 47.826 0.00 0.00 0.00 3.27
2651 4781 2.035632 TCAAACGGCCCAAAACAGATT 58.964 42.857 0.00 0.00 0.00 2.40
2718 4848 1.205460 ACTTACCCATCCCAACCGCT 61.205 55.000 0.00 0.00 0.00 5.52
2815 4994 9.121517 CATCTAACATGTGTTCTTTGAATGTTC 57.878 33.333 0.00 0.00 40.77 3.18
2817 4996 8.344831 TCTAACATGTGTTCTTTGAATGTTCTG 58.655 33.333 0.00 0.00 40.77 3.02
2819 4998 6.866480 ACATGTGTTCTTTGAATGTTCTGTT 58.134 32.000 0.00 0.00 0.00 3.16
2890 5093 4.060900 CACATTCCTTGGATGACCTATCG 58.939 47.826 0.00 0.00 36.62 2.92
2896 5099 4.224147 TCCTTGGATGACCTATCGAAACAA 59.776 41.667 0.00 0.00 33.82 2.83
2902 5105 5.765182 GGATGACCTATCGAAACAATGGAAT 59.235 40.000 0.00 0.00 36.62 3.01
2950 5153 8.805175 TGAACAATGTTGGTTTGAATGATATCT 58.195 29.630 2.20 0.00 0.00 1.98
2954 5157 9.865321 CAATGTTGGTTTGAATGATATCTCTTT 57.135 29.630 3.98 0.00 0.00 2.52
2961 5164 6.932356 TTGAATGATATCTCTTTGTGGAGC 57.068 37.500 3.98 0.00 33.70 4.70
2988 5191 3.613737 GGACCATGCGAAATGATTTTGTG 59.386 43.478 6.98 0.00 0.00 3.33
2991 5194 5.160641 ACCATGCGAAATGATTTTGTGTAC 58.839 37.500 6.98 0.00 0.00 2.90
2992 5195 4.562394 CCATGCGAAATGATTTTGTGTACC 59.438 41.667 6.98 0.00 0.00 3.34
3028 5232 1.673033 CCAGAAACTAGGTGGCGACAG 60.673 57.143 0.00 0.00 44.46 3.51
3043 5247 1.587933 GACAGCGAGGACGAAGAGGT 61.588 60.000 0.00 0.00 42.66 3.85
3045 5249 0.809385 CAGCGAGGACGAAGAGGTTA 59.191 55.000 0.00 0.00 42.66 2.85
3046 5250 1.405821 CAGCGAGGACGAAGAGGTTAT 59.594 52.381 0.00 0.00 42.66 1.89
3047 5251 1.405821 AGCGAGGACGAAGAGGTTATG 59.594 52.381 0.00 0.00 42.66 1.90
3099 5303 2.432119 TGTTGGCACCTACAGACGA 58.568 52.632 0.00 0.00 0.00 4.20
3100 5304 0.317160 TGTTGGCACCTACAGACGAG 59.683 55.000 0.00 0.00 0.00 4.18
3101 5305 0.317479 GTTGGCACCTACAGACGAGT 59.683 55.000 0.00 0.00 0.00 4.18
3102 5306 0.601558 TTGGCACCTACAGACGAGTC 59.398 55.000 0.00 0.00 0.00 3.36
3103 5307 0.538746 TGGCACCTACAGACGAGTCA 60.539 55.000 5.99 0.00 0.00 3.41
3104 5308 0.601558 GGCACCTACAGACGAGTCAA 59.398 55.000 5.99 0.00 0.00 3.18
3107 5311 1.202582 CACCTACAGACGAGTCAAGGG 59.797 57.143 17.56 11.18 33.34 3.95
3127 5331 4.090057 GACAAAGTGAGGCGCCGC 62.090 66.667 24.58 24.58 0.00 6.53
3147 5351 2.674796 GGATGTCCGTAAGAGCAACT 57.325 50.000 0.00 0.00 43.02 3.16
3148 5352 2.541556 GGATGTCCGTAAGAGCAACTC 58.458 52.381 0.00 0.00 43.02 3.01
3149 5353 2.541556 GATGTCCGTAAGAGCAACTCC 58.458 52.381 0.00 0.00 43.02 3.85
3150 5354 1.334160 TGTCCGTAAGAGCAACTCCA 58.666 50.000 0.00 0.00 43.02 3.86
3151 5355 1.689813 TGTCCGTAAGAGCAACTCCAA 59.310 47.619 0.00 0.00 43.02 3.53
3152 5356 2.067013 GTCCGTAAGAGCAACTCCAAC 58.933 52.381 0.00 0.00 43.02 3.77
3153 5357 1.068474 CCGTAAGAGCAACTCCAACG 58.932 55.000 10.64 10.64 38.21 4.10
3154 5358 1.068474 CGTAAGAGCAACTCCAACGG 58.932 55.000 10.02 0.00 36.31 4.44
3155 5359 1.439679 GTAAGAGCAACTCCAACGGG 58.560 55.000 0.00 0.00 0.00 5.28
3156 5360 0.321298 TAAGAGCAACTCCAACGGGC 60.321 55.000 0.00 0.00 0.00 6.13
3157 5361 3.056328 GAGCAACTCCAACGGGCC 61.056 66.667 0.00 0.00 0.00 5.80
3160 5364 3.047877 CAACTCCAACGGGCCGAC 61.048 66.667 35.78 0.00 0.00 4.79
3161 5365 4.324991 AACTCCAACGGGCCGACC 62.325 66.667 35.78 0.00 0.00 4.79
3178 5382 3.656045 CCAAACGGACGGCGCTTT 61.656 61.111 6.90 0.00 0.00 3.51
3179 5383 2.330041 CAAACGGACGGCGCTTTT 59.670 55.556 6.90 0.00 0.00 2.27
3180 5384 2.008697 CAAACGGACGGCGCTTTTG 61.009 57.895 6.90 7.73 0.00 2.44
3181 5385 2.474612 AAACGGACGGCGCTTTTGT 61.475 52.632 6.90 0.34 0.00 2.83
3182 5386 2.383027 AAACGGACGGCGCTTTTGTC 62.383 55.000 6.90 10.54 0.00 3.18
3183 5387 4.084888 CGGACGGCGCTTTTGTCC 62.085 66.667 22.77 22.77 46.91 4.02
3185 5389 3.263941 GACGGCGCTTTTGTCCAT 58.736 55.556 6.90 0.00 0.00 3.41
3186 5390 1.579429 GACGGCGCTTTTGTCCATT 59.421 52.632 6.90 0.00 0.00 3.16
3187 5391 0.454452 GACGGCGCTTTTGTCCATTC 60.454 55.000 6.90 0.00 0.00 2.67
3188 5392 0.889186 ACGGCGCTTTTGTCCATTCT 60.889 50.000 6.90 0.00 0.00 2.40
3189 5393 0.240945 CGGCGCTTTTGTCCATTCTT 59.759 50.000 7.64 0.00 0.00 2.52
3190 5394 1.335872 CGGCGCTTTTGTCCATTCTTT 60.336 47.619 7.64 0.00 0.00 2.52
3191 5395 2.754472 GGCGCTTTTGTCCATTCTTTT 58.246 42.857 7.64 0.00 0.00 2.27
3192 5396 3.610585 CGGCGCTTTTGTCCATTCTTTTA 60.611 43.478 7.64 0.00 0.00 1.52
3193 5397 4.494484 GGCGCTTTTGTCCATTCTTTTAT 58.506 39.130 7.64 0.00 0.00 1.40
3194 5398 4.562789 GGCGCTTTTGTCCATTCTTTTATC 59.437 41.667 7.64 0.00 0.00 1.75
3195 5399 5.402398 GCGCTTTTGTCCATTCTTTTATCT 58.598 37.500 0.00 0.00 0.00 1.98
3196 5400 5.287035 GCGCTTTTGTCCATTCTTTTATCTG 59.713 40.000 0.00 0.00 0.00 2.90
3197 5401 6.381801 CGCTTTTGTCCATTCTTTTATCTGT 58.618 36.000 0.00 0.00 0.00 3.41
3198 5402 6.863126 CGCTTTTGTCCATTCTTTTATCTGTT 59.137 34.615 0.00 0.00 0.00 3.16
3199 5403 7.382218 CGCTTTTGTCCATTCTTTTATCTGTTT 59.618 33.333 0.00 0.00 0.00 2.83
3200 5404 8.490355 GCTTTTGTCCATTCTTTTATCTGTTTG 58.510 33.333 0.00 0.00 0.00 2.93
3201 5405 8.885494 TTTTGTCCATTCTTTTATCTGTTTGG 57.115 30.769 0.00 0.00 0.00 3.28
3202 5406 6.588719 TGTCCATTCTTTTATCTGTTTGGG 57.411 37.500 0.00 0.00 0.00 4.12
3203 5407 6.074648 TGTCCATTCTTTTATCTGTTTGGGT 58.925 36.000 0.00 0.00 0.00 4.51
3204 5408 6.208599 TGTCCATTCTTTTATCTGTTTGGGTC 59.791 38.462 0.00 0.00 0.00 4.46
3205 5409 5.414454 TCCATTCTTTTATCTGTTTGGGTCG 59.586 40.000 0.00 0.00 0.00 4.79
3206 5410 5.393027 CCATTCTTTTATCTGTTTGGGTCGG 60.393 44.000 0.00 0.00 0.00 4.79
3207 5411 3.078837 TCTTTTATCTGTTTGGGTCGGC 58.921 45.455 0.00 0.00 0.00 5.54
3208 5412 1.828979 TTTATCTGTTTGGGTCGGCC 58.171 50.000 0.00 0.00 0.00 6.13
3221 5425 4.841861 CGGCCCGGCGGACATAAA 62.842 66.667 30.79 0.00 36.69 1.40
3222 5426 2.203294 GGCCCGGCGGACATAAAT 60.203 61.111 30.79 0.00 36.99 1.40
3223 5427 2.551912 GGCCCGGCGGACATAAATG 61.552 63.158 30.79 9.07 36.99 2.32
3224 5428 1.822186 GCCCGGCGGACATAAATGT 60.822 57.895 30.79 0.00 45.16 2.71
3235 5439 2.632377 ACATAAATGTCCGGAGCTGTG 58.368 47.619 3.06 1.89 35.87 3.66
3236 5440 2.027192 ACATAAATGTCCGGAGCTGTGT 60.027 45.455 3.06 2.60 35.87 3.72
3237 5441 2.851263 TAAATGTCCGGAGCTGTGTT 57.149 45.000 3.06 0.00 0.00 3.32
3238 5442 1.981256 AAATGTCCGGAGCTGTGTTT 58.019 45.000 3.06 0.00 0.00 2.83
3239 5443 1.238439 AATGTCCGGAGCTGTGTTTG 58.762 50.000 3.06 0.00 0.00 2.93
3240 5444 1.237285 ATGTCCGGAGCTGTGTTTGC 61.237 55.000 3.06 0.00 0.00 3.68
3241 5445 2.664851 TCCGGAGCTGTGTTTGCG 60.665 61.111 0.00 0.00 35.28 4.85
3242 5446 2.972505 CCGGAGCTGTGTTTGCGT 60.973 61.111 0.00 0.00 35.28 5.24
3243 5447 2.551270 CGGAGCTGTGTTTGCGTC 59.449 61.111 0.00 0.00 35.28 5.19
3244 5448 2.551270 GGAGCTGTGTTTGCGTCG 59.449 61.111 0.00 0.00 35.28 5.12
3245 5449 2.551270 GAGCTGTGTTTGCGTCGG 59.449 61.111 0.00 0.00 35.28 4.79
3246 5450 3.579626 GAGCTGTGTTTGCGTCGGC 62.580 63.158 0.00 0.00 40.52 5.54
3270 5474 3.723348 GCCCAACGCTTGTCCGAC 61.723 66.667 0.00 0.00 0.00 4.79
3271 5475 3.047877 CCCAACGCTTGTCCGACC 61.048 66.667 0.00 0.00 0.00 4.79
3272 5476 3.047877 CCAACGCTTGTCCGACCC 61.048 66.667 0.00 0.00 0.00 4.46
3273 5477 2.280524 CAACGCTTGTCCGACCCA 60.281 61.111 0.00 0.00 0.00 4.51
3274 5478 1.671054 CAACGCTTGTCCGACCCAT 60.671 57.895 0.00 0.00 0.00 4.00
3275 5479 1.072505 AACGCTTGTCCGACCCATT 59.927 52.632 0.00 0.00 0.00 3.16
3276 5480 0.536460 AACGCTTGTCCGACCCATTT 60.536 50.000 0.00 0.00 0.00 2.32
3277 5481 0.536460 ACGCTTGTCCGACCCATTTT 60.536 50.000 0.00 0.00 0.00 1.82
3278 5482 1.270947 ACGCTTGTCCGACCCATTTTA 60.271 47.619 0.00 0.00 0.00 1.52
3279 5483 2.014128 CGCTTGTCCGACCCATTTTAT 58.986 47.619 0.00 0.00 0.00 1.40
3280 5484 2.223249 CGCTTGTCCGACCCATTTTATG 60.223 50.000 0.00 0.00 0.00 1.90
3288 5492 3.137687 CCATTTTATGGGCGCCCC 58.862 61.111 41.75 24.44 46.86 5.80
3353 5557 7.886405 TTAATTAAACATAAAAACCGGCCAC 57.114 32.000 0.00 0.00 0.00 5.01
3354 5558 2.425578 AAACATAAAAACCGGCCACG 57.574 45.000 0.00 0.00 40.55 4.94
3355 5559 1.606903 AACATAAAAACCGGCCACGA 58.393 45.000 0.00 0.00 44.60 4.35
3356 5560 1.606903 ACATAAAAACCGGCCACGAA 58.393 45.000 0.00 0.00 44.60 3.85
3357 5561 1.538075 ACATAAAAACCGGCCACGAAG 59.462 47.619 0.00 0.00 44.60 3.79
3358 5562 1.135517 CATAAAAACCGGCCACGAAGG 60.136 52.381 0.00 0.00 44.60 3.46
3368 5572 3.788766 CACGAAGGCCGGCGAAAG 61.789 66.667 22.54 14.55 43.93 2.62
3369 5573 4.309950 ACGAAGGCCGGCGAAAGT 62.310 61.111 22.54 15.26 43.93 2.66
3370 5574 3.488090 CGAAGGCCGGCGAAAGTC 61.488 66.667 22.54 11.59 33.91 3.01
3371 5575 3.125573 GAAGGCCGGCGAAAGTCC 61.126 66.667 22.54 4.09 0.00 3.85
3372 5576 3.894547 GAAGGCCGGCGAAAGTCCA 62.895 63.158 22.54 0.00 0.00 4.02
3373 5577 3.268103 AAGGCCGGCGAAAGTCCAT 62.268 57.895 22.54 0.00 0.00 3.41
3374 5578 1.906105 AAGGCCGGCGAAAGTCCATA 61.906 55.000 22.54 0.00 0.00 2.74
3375 5579 1.227853 GGCCGGCGAAAGTCCATAT 60.228 57.895 22.54 0.00 0.00 1.78
3376 5580 0.818040 GGCCGGCGAAAGTCCATATT 60.818 55.000 22.54 0.00 0.00 1.28
3377 5581 1.541670 GGCCGGCGAAAGTCCATATTA 60.542 52.381 22.54 0.00 0.00 0.98
3378 5582 1.529865 GCCGGCGAAAGTCCATATTAC 59.470 52.381 12.58 0.00 0.00 1.89
3379 5583 2.828877 CCGGCGAAAGTCCATATTACA 58.171 47.619 9.30 0.00 0.00 2.41
3380 5584 3.399330 CCGGCGAAAGTCCATATTACAT 58.601 45.455 9.30 0.00 0.00 2.29
3381 5585 3.813166 CCGGCGAAAGTCCATATTACATT 59.187 43.478 9.30 0.00 0.00 2.71
3382 5586 4.992319 CCGGCGAAAGTCCATATTACATTA 59.008 41.667 9.30 0.00 0.00 1.90
3383 5587 5.467399 CCGGCGAAAGTCCATATTACATTAA 59.533 40.000 9.30 0.00 0.00 1.40
3384 5588 6.148811 CCGGCGAAAGTCCATATTACATTAAT 59.851 38.462 9.30 0.00 0.00 1.40
3385 5589 7.308348 CCGGCGAAAGTCCATATTACATTAATT 60.308 37.037 9.30 0.00 0.00 1.40
3386 5590 8.714179 CGGCGAAAGTCCATATTACATTAATTA 58.286 33.333 0.00 0.00 0.00 1.40
3413 5617 8.490355 ACATAAAAAGGTAAAAACTAGACGACG 58.510 33.333 0.00 0.00 0.00 5.12
3414 5618 4.979564 AAAGGTAAAAACTAGACGACGC 57.020 40.909 0.00 0.00 0.00 5.19
3415 5619 2.589014 AGGTAAAAACTAGACGACGCG 58.411 47.619 3.53 3.53 0.00 6.01
3416 5620 1.058270 GGTAAAAACTAGACGACGCGC 59.942 52.381 5.73 0.00 0.00 6.86
3417 5621 1.981533 GTAAAAACTAGACGACGCGCT 59.018 47.619 5.73 0.00 0.00 5.92
3418 5622 0.782384 AAAAACTAGACGACGCGCTG 59.218 50.000 5.73 0.00 0.00 5.18
3419 5623 1.615107 AAAACTAGACGACGCGCTGC 61.615 55.000 5.73 0.00 0.00 5.25
3420 5624 3.966026 AACTAGACGACGCGCTGCC 62.966 63.158 5.73 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.558359 CGGTCAAGAAAAAGGCTTGGAT 59.442 45.455 0.00 0.00 42.24 3.41
2 3 1.000274 CCGGTCAAGAAAAAGGCTTGG 60.000 52.381 0.00 0.00 42.24 3.61
3 4 1.000274 CCCGGTCAAGAAAAAGGCTTG 60.000 52.381 0.00 0.00 43.09 4.01
4 5 1.133606 TCCCGGTCAAGAAAAAGGCTT 60.134 47.619 0.00 0.00 0.00 4.35
6 7 1.269723 CTTCCCGGTCAAGAAAAAGGC 59.730 52.381 0.00 0.00 0.00 4.35
7 8 2.552743 GACTTCCCGGTCAAGAAAAAGG 59.447 50.000 15.57 0.00 36.35 3.11
8 9 2.552743 GGACTTCCCGGTCAAGAAAAAG 59.447 50.000 15.57 2.52 37.91 2.27
9 10 2.092321 TGGACTTCCCGGTCAAGAAAAA 60.092 45.455 15.57 0.00 37.91 1.94
10 11 1.491332 TGGACTTCCCGGTCAAGAAAA 59.509 47.619 15.57 0.20 37.91 2.29
11 12 1.071699 CTGGACTTCCCGGTCAAGAAA 59.928 52.381 15.57 2.23 39.06 2.52
12 13 0.685097 CTGGACTTCCCGGTCAAGAA 59.315 55.000 15.57 4.29 39.06 2.52
13 14 1.827399 GCTGGACTTCCCGGTCAAGA 61.827 60.000 15.57 0.00 43.53 3.02
14 15 1.376037 GCTGGACTTCCCGGTCAAG 60.376 63.158 0.00 4.64 43.53 3.02
15 16 2.747686 GCTGGACTTCCCGGTCAA 59.252 61.111 0.00 0.00 43.53 3.18
16 17 3.319198 GGCTGGACTTCCCGGTCA 61.319 66.667 0.00 0.00 45.43 4.02
17 18 4.452733 CGGCTGGACTTCCCGGTC 62.453 72.222 0.00 0.00 43.53 4.79
21 22 4.475135 GAGGCGGCTGGACTTCCC 62.475 72.222 19.63 0.00 29.96 3.97
22 23 1.614241 TAAGAGGCGGCTGGACTTCC 61.614 60.000 19.63 0.00 29.96 3.46
23 24 0.466124 ATAAGAGGCGGCTGGACTTC 59.534 55.000 19.63 0.00 29.96 3.01
24 25 1.789523 TATAAGAGGCGGCTGGACTT 58.210 50.000 19.63 16.38 29.96 3.01
25 26 2.016905 ATATAAGAGGCGGCTGGACT 57.983 50.000 19.63 4.10 35.84 3.85
26 27 2.094130 GGTATATAAGAGGCGGCTGGAC 60.094 54.545 19.63 1.04 0.00 4.02
27 28 2.176889 GGTATATAAGAGGCGGCTGGA 58.823 52.381 19.63 0.38 0.00 3.86
28 29 2.180276 AGGTATATAAGAGGCGGCTGG 58.820 52.381 19.63 0.00 0.00 4.85
29 30 4.142138 CCTTAGGTATATAAGAGGCGGCTG 60.142 50.000 19.63 0.00 35.19 4.85
30 31 4.024670 CCTTAGGTATATAAGAGGCGGCT 58.975 47.826 13.09 13.09 35.19 5.52
31 32 3.132467 CCCTTAGGTATATAAGAGGCGGC 59.868 52.174 0.00 0.00 35.19 6.53
32 33 4.607239 TCCCTTAGGTATATAAGAGGCGG 58.393 47.826 0.00 0.00 35.19 6.13
33 34 5.892119 TCATCCCTTAGGTATATAAGAGGCG 59.108 44.000 0.00 0.00 35.19 5.52
34 35 6.183360 CGTCATCCCTTAGGTATATAAGAGGC 60.183 46.154 0.00 0.00 35.19 4.70
35 36 6.321690 CCGTCATCCCTTAGGTATATAAGAGG 59.678 46.154 0.00 0.00 35.19 3.69
36 37 6.183360 GCCGTCATCCCTTAGGTATATAAGAG 60.183 46.154 0.00 0.00 35.19 2.85
37 38 5.655532 GCCGTCATCCCTTAGGTATATAAGA 59.344 44.000 0.00 0.00 35.19 2.10
38 39 5.163437 GGCCGTCATCCCTTAGGTATATAAG 60.163 48.000 0.00 0.00 33.37 1.73
39 40 4.713321 GGCCGTCATCCCTTAGGTATATAA 59.287 45.833 0.00 0.00 0.00 0.98
40 41 4.284178 GGCCGTCATCCCTTAGGTATATA 58.716 47.826 0.00 0.00 0.00 0.86
41 42 3.105283 GGCCGTCATCCCTTAGGTATAT 58.895 50.000 0.00 0.00 0.00 0.86
42 43 2.532843 GGCCGTCATCCCTTAGGTATA 58.467 52.381 0.00 0.00 0.00 1.47
43 44 1.349067 GGCCGTCATCCCTTAGGTAT 58.651 55.000 0.00 0.00 0.00 2.73
44 45 1.111116 CGGCCGTCATCCCTTAGGTA 61.111 60.000 19.50 0.00 0.00 3.08
45 46 2.432300 CGGCCGTCATCCCTTAGGT 61.432 63.158 19.50 0.00 0.00 3.08
46 47 1.472662 ATCGGCCGTCATCCCTTAGG 61.473 60.000 27.15 0.00 0.00 2.69
47 48 0.393077 AATCGGCCGTCATCCCTTAG 59.607 55.000 27.15 0.00 0.00 2.18
48 49 0.105964 CAATCGGCCGTCATCCCTTA 59.894 55.000 27.15 1.58 0.00 2.69
49 50 1.153168 CAATCGGCCGTCATCCCTT 60.153 57.895 27.15 5.69 0.00 3.95
50 51 1.622607 TTCAATCGGCCGTCATCCCT 61.623 55.000 27.15 0.00 0.00 4.20
51 52 1.153249 TTCAATCGGCCGTCATCCC 60.153 57.895 27.15 0.00 0.00 3.85
52 53 0.742990 TGTTCAATCGGCCGTCATCC 60.743 55.000 27.15 10.57 0.00 3.51
53 54 1.083489 TTGTTCAATCGGCCGTCATC 58.917 50.000 27.15 12.31 0.00 2.92
54 55 0.802494 GTTGTTCAATCGGCCGTCAT 59.198 50.000 27.15 9.68 0.00 3.06
55 56 0.533085 TGTTGTTCAATCGGCCGTCA 60.533 50.000 27.15 7.11 0.00 4.35
56 57 0.110373 GTGTTGTTCAATCGGCCGTC 60.110 55.000 27.15 10.22 0.00 4.79
57 58 0.816018 TGTGTTGTTCAATCGGCCGT 60.816 50.000 27.15 10.00 0.00 5.68
58 59 0.385473 GTGTGTTGTTCAATCGGCCG 60.385 55.000 22.12 22.12 0.00 6.13
59 60 0.665835 TGTGTGTTGTTCAATCGGCC 59.334 50.000 0.00 0.00 0.00 6.13
60 61 2.483583 TTGTGTGTTGTTCAATCGGC 57.516 45.000 0.00 0.00 0.00 5.54
63 64 5.510671 AGTTCGATTGTGTGTTGTTCAATC 58.489 37.500 0.00 0.00 41.96 2.67
64 65 5.499139 AGTTCGATTGTGTGTTGTTCAAT 57.501 34.783 0.00 0.00 35.00 2.57
65 66 4.955925 AGTTCGATTGTGTGTTGTTCAA 57.044 36.364 0.00 0.00 0.00 2.69
66 67 6.258947 TGATTAGTTCGATTGTGTGTTGTTCA 59.741 34.615 0.00 0.00 0.00 3.18
67 68 6.655062 TGATTAGTTCGATTGTGTGTTGTTC 58.345 36.000 0.00 0.00 0.00 3.18
68 69 6.612247 TGATTAGTTCGATTGTGTGTTGTT 57.388 33.333 0.00 0.00 0.00 2.83
69 70 6.612247 TTGATTAGTTCGATTGTGTGTTGT 57.388 33.333 0.00 0.00 0.00 3.32
72 73 9.817809 ACTATATTGATTAGTTCGATTGTGTGT 57.182 29.630 0.00 0.00 30.65 3.72
99 100 9.152595 GGAGAGATAAAACGTAGATGAAAAAGT 57.847 33.333 0.00 0.00 0.00 2.66
100 101 9.151471 TGGAGAGATAAAACGTAGATGAAAAAG 57.849 33.333 0.00 0.00 0.00 2.27
101 102 8.932791 GTGGAGAGATAAAACGTAGATGAAAAA 58.067 33.333 0.00 0.00 0.00 1.94
102 103 7.548075 GGTGGAGAGATAAAACGTAGATGAAAA 59.452 37.037 0.00 0.00 0.00 2.29
103 104 7.039882 GGTGGAGAGATAAAACGTAGATGAAA 58.960 38.462 0.00 0.00 0.00 2.69
104 105 6.570692 GGTGGAGAGATAAAACGTAGATGAA 58.429 40.000 0.00 0.00 0.00 2.57
105 106 5.220989 CGGTGGAGAGATAAAACGTAGATGA 60.221 44.000 0.00 0.00 0.00 2.92
106 107 4.976731 CGGTGGAGAGATAAAACGTAGATG 59.023 45.833 0.00 0.00 0.00 2.90
107 108 4.643784 ACGGTGGAGAGATAAAACGTAGAT 59.356 41.667 0.00 0.00 0.00 1.98
108 109 4.012374 ACGGTGGAGAGATAAAACGTAGA 58.988 43.478 0.00 0.00 0.00 2.59
109 110 4.367386 ACGGTGGAGAGATAAAACGTAG 57.633 45.455 0.00 0.00 0.00 3.51
110 111 4.789012 AACGGTGGAGAGATAAAACGTA 57.211 40.909 0.00 0.00 32.59 3.57
111 112 3.672767 AACGGTGGAGAGATAAAACGT 57.327 42.857 0.00 0.00 34.52 3.99
112 113 5.178809 AGAAAAACGGTGGAGAGATAAAACG 59.821 40.000 0.00 0.00 0.00 3.60
113 114 6.427242 AGAGAAAAACGGTGGAGAGATAAAAC 59.573 38.462 0.00 0.00 0.00 2.43
114 115 6.531021 AGAGAAAAACGGTGGAGAGATAAAA 58.469 36.000 0.00 0.00 0.00 1.52
115 116 6.014499 AGAGAGAAAAACGGTGGAGAGATAAA 60.014 38.462 0.00 0.00 0.00 1.40
116 117 5.480772 AGAGAGAAAAACGGTGGAGAGATAA 59.519 40.000 0.00 0.00 0.00 1.75
117 118 5.017490 AGAGAGAAAAACGGTGGAGAGATA 58.983 41.667 0.00 0.00 0.00 1.98
118 119 3.835395 AGAGAGAAAAACGGTGGAGAGAT 59.165 43.478 0.00 0.00 0.00 2.75
119 120 3.231818 AGAGAGAAAAACGGTGGAGAGA 58.768 45.455 0.00 0.00 0.00 3.10
120 121 3.580731 GAGAGAGAAAAACGGTGGAGAG 58.419 50.000 0.00 0.00 0.00 3.20
121 122 2.030185 CGAGAGAGAAAAACGGTGGAGA 60.030 50.000 0.00 0.00 0.00 3.71
122 123 2.288273 ACGAGAGAGAAAAACGGTGGAG 60.288 50.000 0.00 0.00 0.00 3.86
123 124 1.684983 ACGAGAGAGAAAAACGGTGGA 59.315 47.619 0.00 0.00 0.00 4.02
124 125 2.150397 ACGAGAGAGAAAAACGGTGG 57.850 50.000 0.00 0.00 0.00 4.61
125 126 3.381949 AGAACGAGAGAGAAAAACGGTG 58.618 45.455 0.00 0.00 0.00 4.94
126 127 3.729862 AGAACGAGAGAGAAAAACGGT 57.270 42.857 0.00 0.00 0.00 4.83
127 128 3.119792 CGAAGAACGAGAGAGAAAAACGG 59.880 47.826 0.00 0.00 45.77 4.44
128 129 3.420672 GCGAAGAACGAGAGAGAAAAACG 60.421 47.826 0.00 0.00 45.77 3.60
129 130 3.736759 AGCGAAGAACGAGAGAGAAAAAC 59.263 43.478 0.00 0.00 45.77 2.43
130 131 3.736252 CAGCGAAGAACGAGAGAGAAAAA 59.264 43.478 0.00 0.00 45.77 1.94
131 132 3.243434 ACAGCGAAGAACGAGAGAGAAAA 60.243 43.478 0.00 0.00 45.77 2.29
132 133 2.293677 ACAGCGAAGAACGAGAGAGAAA 59.706 45.455 0.00 0.00 45.77 2.52
133 134 1.880675 ACAGCGAAGAACGAGAGAGAA 59.119 47.619 0.00 0.00 45.77 2.87
134 135 1.524848 ACAGCGAAGAACGAGAGAGA 58.475 50.000 0.00 0.00 45.77 3.10
135 136 2.095466 AGAACAGCGAAGAACGAGAGAG 60.095 50.000 0.00 0.00 45.77 3.20
136 137 1.880675 AGAACAGCGAAGAACGAGAGA 59.119 47.619 0.00 0.00 45.77 3.10
137 138 2.339728 AGAACAGCGAAGAACGAGAG 57.660 50.000 0.00 0.00 45.77 3.20
138 139 2.662700 GAAGAACAGCGAAGAACGAGA 58.337 47.619 0.00 0.00 45.77 4.04
139 140 1.383744 CGAAGAACAGCGAAGAACGAG 59.616 52.381 0.00 0.00 45.77 4.18
140 141 1.268896 ACGAAGAACAGCGAAGAACGA 60.269 47.619 0.00 0.00 45.77 3.85
141 142 1.129326 ACGAAGAACAGCGAAGAACG 58.871 50.000 0.00 0.00 45.66 3.95
142 143 1.859080 ACACGAAGAACAGCGAAGAAC 59.141 47.619 0.00 0.00 0.00 3.01
143 144 2.218953 ACACGAAGAACAGCGAAGAA 57.781 45.000 0.00 0.00 0.00 2.52
144 145 2.218953 AACACGAAGAACAGCGAAGA 57.781 45.000 0.00 0.00 0.00 2.87
145 146 2.284150 TCAAACACGAAGAACAGCGAAG 59.716 45.455 0.00 0.00 0.00 3.79
146 147 2.272678 TCAAACACGAAGAACAGCGAA 58.727 42.857 0.00 0.00 0.00 4.70
147 148 1.858458 CTCAAACACGAAGAACAGCGA 59.142 47.619 0.00 0.00 0.00 4.93
148 149 1.858458 TCTCAAACACGAAGAACAGCG 59.142 47.619 0.00 0.00 0.00 5.18
149 150 2.348966 GCTCTCAAACACGAAGAACAGC 60.349 50.000 0.00 0.00 0.00 4.40
150 151 3.060003 CAGCTCTCAAACACGAAGAACAG 60.060 47.826 0.00 0.00 0.00 3.16
151 152 2.866156 CAGCTCTCAAACACGAAGAACA 59.134 45.455 0.00 0.00 0.00 3.18
152 153 2.348966 GCAGCTCTCAAACACGAAGAAC 60.349 50.000 0.00 0.00 0.00 3.01
153 154 1.867233 GCAGCTCTCAAACACGAAGAA 59.133 47.619 0.00 0.00 0.00 2.52
154 155 1.502231 GCAGCTCTCAAACACGAAGA 58.498 50.000 0.00 0.00 0.00 2.87
155 156 0.162507 CGCAGCTCTCAAACACGAAG 59.837 55.000 0.00 0.00 0.00 3.79
156 157 0.249280 TCGCAGCTCTCAAACACGAA 60.249 50.000 0.00 0.00 0.00 3.85
157 158 0.249280 TTCGCAGCTCTCAAACACGA 60.249 50.000 0.00 0.00 0.00 4.35
158 159 0.792640 ATTCGCAGCTCTCAAACACG 59.207 50.000 0.00 0.00 0.00 4.49
159 160 2.413371 GGAATTCGCAGCTCTCAAACAC 60.413 50.000 0.00 0.00 0.00 3.32
160 161 1.806542 GGAATTCGCAGCTCTCAAACA 59.193 47.619 0.00 0.00 0.00 2.83
161 162 1.201965 CGGAATTCGCAGCTCTCAAAC 60.202 52.381 0.00 0.00 0.00 2.93
162 163 1.078709 CGGAATTCGCAGCTCTCAAA 58.921 50.000 0.00 0.00 0.00 2.69
163 164 0.246360 TCGGAATTCGCAGCTCTCAA 59.754 50.000 0.00 0.00 39.05 3.02
164 165 0.179127 CTCGGAATTCGCAGCTCTCA 60.179 55.000 0.00 0.00 39.05 3.27
165 166 0.873743 CCTCGGAATTCGCAGCTCTC 60.874 60.000 0.00 0.00 39.05 3.20
166 167 1.142748 CCTCGGAATTCGCAGCTCT 59.857 57.895 0.00 0.00 39.05 4.09
167 168 2.529619 GCCTCGGAATTCGCAGCTC 61.530 63.158 0.00 0.00 39.05 4.09
168 169 2.512515 GCCTCGGAATTCGCAGCT 60.513 61.111 0.00 0.00 39.05 4.24
169 170 2.512515 AGCCTCGGAATTCGCAGC 60.513 61.111 0.00 0.01 39.05 5.25
170 171 0.385751 TAGAGCCTCGGAATTCGCAG 59.614 55.000 0.00 0.00 39.05 5.18
171 172 0.385751 CTAGAGCCTCGGAATTCGCA 59.614 55.000 0.00 0.00 39.05 5.10
172 173 0.319125 CCTAGAGCCTCGGAATTCGC 60.319 60.000 0.00 0.00 39.05 4.70
173 174 0.315568 CCCTAGAGCCTCGGAATTCG 59.684 60.000 0.00 0.00 40.90 3.34
174 175 0.682292 CCCCTAGAGCCTCGGAATTC 59.318 60.000 0.00 0.00 0.00 2.17
175 176 1.411651 GCCCCTAGAGCCTCGGAATT 61.412 60.000 0.00 0.00 0.00 2.17
176 177 1.839296 GCCCCTAGAGCCTCGGAAT 60.839 63.158 0.00 0.00 0.00 3.01
177 178 2.444140 GCCCCTAGAGCCTCGGAA 60.444 66.667 0.00 0.00 0.00 4.30
178 179 4.896829 CGCCCCTAGAGCCTCGGA 62.897 72.222 0.00 0.00 0.00 4.55
179 180 4.896829 TCGCCCCTAGAGCCTCGG 62.897 72.222 0.00 0.00 0.00 4.63
180 181 3.291383 CTCGCCCCTAGAGCCTCG 61.291 72.222 0.00 0.00 0.00 4.63
185 186 1.287503 GATTCGCTCGCCCCTAGAG 59.712 63.158 0.00 0.00 38.68 2.43
186 187 2.552819 CGATTCGCTCGCCCCTAGA 61.553 63.158 0.00 0.00 41.14 2.43
187 188 2.049985 CGATTCGCTCGCCCCTAG 60.050 66.667 0.00 0.00 41.14 3.02
191 192 2.734756 CTAGGTCGATTCGCTCGCCC 62.735 65.000 0.00 7.72 45.74 6.13
195 196 1.007154 GCCCTAGGTCGATTCGCTC 60.007 63.158 8.29 0.00 0.00 5.03
196 197 1.739338 CTGCCCTAGGTCGATTCGCT 61.739 60.000 8.29 0.00 0.00 4.93
197 198 1.300233 CTGCCCTAGGTCGATTCGC 60.300 63.158 8.29 2.31 0.00 4.70
198 199 1.300233 GCTGCCCTAGGTCGATTCG 60.300 63.158 8.29 0.00 0.00 3.34
199 200 1.069935 GGCTGCCCTAGGTCGATTC 59.930 63.158 7.66 0.00 0.00 2.52
200 201 2.444256 GGGCTGCCCTAGGTCGATT 61.444 63.158 30.42 0.00 41.34 3.34
201 202 2.844839 GGGCTGCCCTAGGTCGAT 60.845 66.667 30.42 0.00 41.34 3.59
202 203 2.306715 TATGGGCTGCCCTAGGTCGA 62.307 60.000 35.80 16.46 45.70 4.20
203 204 1.821061 CTATGGGCTGCCCTAGGTCG 61.821 65.000 35.80 15.67 45.70 4.79
204 205 2.062070 CTATGGGCTGCCCTAGGTC 58.938 63.158 35.80 11.26 45.70 3.85
205 206 2.150051 GCTATGGGCTGCCCTAGGT 61.150 63.158 35.80 21.51 45.70 3.08
206 207 2.753029 GCTATGGGCTGCCCTAGG 59.247 66.667 35.80 24.75 45.70 3.02
207 208 2.753029 GGCTATGGGCTGCCCTAG 59.247 66.667 35.80 30.35 45.70 3.02
208 209 3.241530 CGGCTATGGGCTGCCCTA 61.242 66.667 35.80 23.24 45.70 3.53
234 235 2.844839 GGGAGGGATCCCGTCAGG 60.845 72.222 25.48 0.00 39.85 3.86
248 249 4.585216 AACCCCACACCCTCGGGA 62.585 66.667 9.43 0.00 46.34 5.14
249 250 3.141421 AAAACCCCACACCCTCGGG 62.141 63.158 0.00 0.00 43.05 5.14
250 251 1.602605 GAAAACCCCACACCCTCGG 60.603 63.158 0.00 0.00 0.00 4.63
251 252 0.889186 CTGAAAACCCCACACCCTCG 60.889 60.000 0.00 0.00 0.00 4.63
252 253 0.539669 CCTGAAAACCCCACACCCTC 60.540 60.000 0.00 0.00 0.00 4.30
253 254 1.293683 ACCTGAAAACCCCACACCCT 61.294 55.000 0.00 0.00 0.00 4.34
254 255 0.826256 GACCTGAAAACCCCACACCC 60.826 60.000 0.00 0.00 0.00 4.61
255 256 0.185175 AGACCTGAAAACCCCACACC 59.815 55.000 0.00 0.00 0.00 4.16
256 257 2.158726 TGTAGACCTGAAAACCCCACAC 60.159 50.000 0.00 0.00 0.00 3.82
257 258 2.128535 TGTAGACCTGAAAACCCCACA 58.871 47.619 0.00 0.00 0.00 4.17
258 259 2.943036 TGTAGACCTGAAAACCCCAC 57.057 50.000 0.00 0.00 0.00 4.61
259 260 3.955524 TTTGTAGACCTGAAAACCCCA 57.044 42.857 0.00 0.00 0.00 4.96
260 261 3.005472 GCTTTTGTAGACCTGAAAACCCC 59.995 47.826 0.00 0.00 0.00 4.95
261 262 3.304458 CGCTTTTGTAGACCTGAAAACCC 60.304 47.826 0.00 0.00 0.00 4.11
262 263 3.852205 GCGCTTTTGTAGACCTGAAAACC 60.852 47.826 0.00 0.00 0.00 3.27
263 264 3.297472 GCGCTTTTGTAGACCTGAAAAC 58.703 45.455 0.00 0.00 0.00 2.43
264 265 2.292292 GGCGCTTTTGTAGACCTGAAAA 59.708 45.455 7.64 0.00 0.00 2.29
265 266 1.877443 GGCGCTTTTGTAGACCTGAAA 59.123 47.619 7.64 0.00 0.00 2.69
266 267 1.519408 GGCGCTTTTGTAGACCTGAA 58.481 50.000 7.64 0.00 0.00 3.02
267 268 0.321298 GGGCGCTTTTGTAGACCTGA 60.321 55.000 7.64 0.00 0.00 3.86
268 269 1.635663 CGGGCGCTTTTGTAGACCTG 61.636 60.000 7.64 0.00 0.00 4.00
269 270 1.375523 CGGGCGCTTTTGTAGACCT 60.376 57.895 7.64 0.00 0.00 3.85
270 271 1.632948 GACGGGCGCTTTTGTAGACC 61.633 60.000 7.64 0.00 0.00 3.85
271 272 1.785951 GACGGGCGCTTTTGTAGAC 59.214 57.895 7.64 0.00 0.00 2.59
272 273 1.735198 CGACGGGCGCTTTTGTAGA 60.735 57.895 7.64 0.00 0.00 2.59
273 274 1.735198 TCGACGGGCGCTTTTGTAG 60.735 57.895 7.64 1.53 40.61 2.74
274 275 2.023223 GTCGACGGGCGCTTTTGTA 61.023 57.895 7.64 0.00 40.61 2.41
275 276 3.343421 GTCGACGGGCGCTTTTGT 61.343 61.111 7.64 0.00 40.61 2.83
276 277 3.041940 AGTCGACGGGCGCTTTTG 61.042 61.111 10.46 0.00 40.61 2.44
277 278 3.041940 CAGTCGACGGGCGCTTTT 61.042 61.111 10.46 0.00 40.61 2.27
278 279 4.295119 ACAGTCGACGGGCGCTTT 62.295 61.111 19.84 0.00 40.61 3.51
279 280 4.719369 GACAGTCGACGGGCGCTT 62.719 66.667 19.84 0.00 40.61 4.68
281 282 4.719369 AAGACAGTCGACGGGCGC 62.719 66.667 19.84 0.00 40.61 6.53
282 283 2.805353 CAAGACAGTCGACGGGCG 60.805 66.667 19.84 0.00 42.69 6.13
283 284 3.112709 GCAAGACAGTCGACGGGC 61.113 66.667 19.84 17.29 0.00 6.13
284 285 2.191354 TACGCAAGACAGTCGACGGG 62.191 60.000 19.84 13.94 43.62 5.28
285 286 0.179171 ATACGCAAGACAGTCGACGG 60.179 55.000 14.42 14.42 43.62 4.79
286 287 1.181001 GATACGCAAGACAGTCGACG 58.819 55.000 10.46 7.86 43.62 5.12
287 288 1.181001 CGATACGCAAGACAGTCGAC 58.819 55.000 7.70 7.70 43.62 4.20
288 289 3.598678 CGATACGCAAGACAGTCGA 57.401 52.632 0.00 0.00 43.62 4.20
301 302 3.017314 CGACCGACAGCGCGATAC 61.017 66.667 12.10 0.00 35.83 2.24
302 303 4.246206 CCGACCGACAGCGCGATA 62.246 66.667 12.10 0.00 35.83 2.92
307 308 4.477975 GAGACCCGACCGACAGCG 62.478 72.222 0.00 0.00 37.24 5.18
308 309 4.131088 GGAGACCCGACCGACAGC 62.131 72.222 0.00 0.00 0.00 4.40
309 310 1.935327 GAAGGAGACCCGACCGACAG 61.935 65.000 0.00 0.00 37.58 3.51
310 311 1.975407 GAAGGAGACCCGACCGACA 60.975 63.158 0.00 0.00 37.58 4.35
311 312 2.883621 GAAGGAGACCCGACCGAC 59.116 66.667 0.00 0.00 37.58 4.79
312 313 2.749044 CGAAGGAGACCCGACCGA 60.749 66.667 0.00 0.00 37.58 4.69
313 314 2.749044 TCGAAGGAGACCCGACCG 60.749 66.667 0.00 0.00 37.58 4.79
314 315 2.883621 GTCGAAGGAGACCCGACC 59.116 66.667 0.00 0.00 45.39 4.79
315 316 2.331132 ACGTCGAAGGAGACCCGAC 61.331 63.158 0.00 0.00 46.67 4.79
316 317 2.033141 ACGTCGAAGGAGACCCGA 59.967 61.111 0.00 0.00 37.85 5.14
317 318 2.178521 CACGTCGAAGGAGACCCG 59.821 66.667 0.00 0.00 37.85 5.28
318 319 1.507174 CTCACGTCGAAGGAGACCC 59.493 63.158 0.00 0.00 37.85 4.46
319 320 1.153997 GCTCACGTCGAAGGAGACC 60.154 63.158 16.63 0.00 37.85 3.85
320 321 1.085091 TAGCTCACGTCGAAGGAGAC 58.915 55.000 16.63 10.11 37.76 3.36
321 322 1.085091 GTAGCTCACGTCGAAGGAGA 58.915 55.000 16.63 7.92 0.00 3.71
322 323 0.247735 CGTAGCTCACGTCGAAGGAG 60.248 60.000 0.00 7.74 45.82 3.69
323 324 1.792301 CGTAGCTCACGTCGAAGGA 59.208 57.895 0.00 0.00 45.82 3.36
324 325 4.361827 CGTAGCTCACGTCGAAGG 57.638 61.111 0.00 0.00 45.82 3.46
332 333 1.084370 GGTGATGCACCGTAGCTCAC 61.084 60.000 5.91 5.91 44.95 3.51
333 334 1.218047 GGTGATGCACCGTAGCTCA 59.782 57.895 0.22 0.00 44.95 4.26
334 335 4.110493 GGTGATGCACCGTAGCTC 57.890 61.111 0.22 0.00 44.95 4.09
342 343 1.805945 GACGTCGAGGGTGATGCAC 60.806 63.158 10.27 0.00 0.00 4.57
343 344 2.571757 GACGTCGAGGGTGATGCA 59.428 61.111 10.27 0.00 0.00 3.96
344 345 2.579787 CGACGTCGAGGGTGATGC 60.580 66.667 33.35 0.00 43.02 3.91
345 346 3.184206 TCGACGTCGAGGGTGATG 58.816 61.111 34.97 5.74 44.22 3.07
353 354 1.070821 ACGTGTATCTTCGACGTCGA 58.929 50.000 34.97 34.97 42.43 4.20
354 355 1.169408 CACGTGTATCTTCGACGTCG 58.831 55.000 31.30 31.30 44.15 5.12
355 356 2.164427 GTCACGTGTATCTTCGACGTC 58.836 52.381 16.51 5.18 44.15 4.34
356 357 1.463034 CGTCACGTGTATCTTCGACGT 60.463 52.381 16.51 0.00 46.78 4.34
357 358 1.169408 CGTCACGTGTATCTTCGACG 58.831 55.000 16.51 11.44 40.04 5.12
358 359 2.238245 ACGTCACGTGTATCTTCGAC 57.762 50.000 16.51 2.42 39.18 4.20
369 370 1.135699 GACACACGAACACGTCACGT 61.136 55.000 0.00 0.00 42.36 4.49
370 371 1.135114 TGACACACGAACACGTCACG 61.135 55.000 0.00 0.00 38.21 4.35
371 372 0.993532 TTGACACACGAACACGTCAC 59.006 50.000 0.00 0.00 38.07 3.67
372 373 1.929230 ATTGACACACGAACACGTCA 58.071 45.000 0.00 0.00 38.21 4.35
373 374 4.640805 AATATTGACACACGAACACGTC 57.359 40.909 0.00 0.00 38.21 4.34
374 375 5.462729 TGTTAATATTGACACACGAACACGT 59.537 36.000 8.87 0.00 41.02 4.49
375 376 5.907004 TGTTAATATTGACACACGAACACG 58.093 37.500 8.87 0.00 0.00 4.49
376 377 8.722342 AAATGTTAATATTGACACACGAACAC 57.278 30.769 14.61 0.00 29.05 3.32
377 378 9.737427 AAAAATGTTAATATTGACACACGAACA 57.263 25.926 14.61 6.87 29.05 3.18
403 404 1.758592 CAGACCGTCCCCTCCAAAA 59.241 57.895 0.00 0.00 0.00 2.44
437 438 4.929146 ACAGCCCTATCCCCATAATAAC 57.071 45.455 0.00 0.00 0.00 1.89
454 455 7.134815 CACTTGACAATAATAGGCATAACAGC 58.865 38.462 0.00 0.00 0.00 4.40
530 532 5.188948 AGGTGCTATGTAAATGTAGGTGTCA 59.811 40.000 0.00 0.00 0.00 3.58
569 571 0.245539 TAACCTGACGTACCAGCAGC 59.754 55.000 0.00 0.00 32.97 5.25
574 576 4.050553 CTCGTTTTTAACCTGACGTACCA 58.949 43.478 0.00 0.00 36.89 3.25
581 583 4.062991 GCTTCTCCTCGTTTTTAACCTGA 58.937 43.478 0.00 0.00 0.00 3.86
587 589 4.674623 CGAGCTAGCTTCTCCTCGTTTTTA 60.675 45.833 20.42 0.00 41.47 1.52
590 592 1.133407 CGAGCTAGCTTCTCCTCGTTT 59.867 52.381 20.42 0.00 41.47 3.60
591 593 0.736053 CGAGCTAGCTTCTCCTCGTT 59.264 55.000 20.42 0.00 41.47 3.85
603 605 3.643978 GCGGCCATTGCGAGCTAG 61.644 66.667 2.24 0.00 38.33 3.42
657 659 1.668419 CCCATTGTTTAGCTCGGAGG 58.332 55.000 7.20 0.00 0.00 4.30
659 661 0.326595 TGCCCATTGTTTAGCTCGGA 59.673 50.000 0.00 0.00 0.00 4.55
662 664 1.745653 GGAGTGCCCATTGTTTAGCTC 59.254 52.381 0.00 0.00 34.14 4.09
681 745 1.339631 TGCGGAATTACAGGTGAAGGG 60.340 52.381 0.00 0.00 0.00 3.95
682 746 2.107950 TGCGGAATTACAGGTGAAGG 57.892 50.000 0.00 0.00 0.00 3.46
683 747 2.285220 CGATGCGGAATTACAGGTGAAG 59.715 50.000 0.00 0.00 0.00 3.02
684 748 2.276201 CGATGCGGAATTACAGGTGAA 58.724 47.619 0.00 0.00 0.00 3.18
685 749 1.934589 CGATGCGGAATTACAGGTGA 58.065 50.000 0.00 0.00 0.00 4.02
744 808 2.950877 CGAAGCAGACTCACGGATC 58.049 57.895 0.00 0.00 0.00 3.36
2651 4781 5.874810 GTGTAGGTTGAAGATGAATAGTGCA 59.125 40.000 0.00 0.00 0.00 4.57
2757 4887 4.821805 CCCAACACAGAAGACACAAATAGT 59.178 41.667 0.00 0.00 0.00 2.12
2793 4971 7.995289 ACAGAACATTCAAAGAACACATGTTA 58.005 30.769 0.00 0.00 38.02 2.41
2936 5139 7.066766 AGCTCCACAAAGAGATATCATTCAAAC 59.933 37.037 5.32 0.00 35.82 2.93
2939 5142 6.244552 AGCTCCACAAAGAGATATCATTCA 57.755 37.500 5.32 0.00 35.82 2.57
2940 5143 8.719648 CATAAGCTCCACAAAGAGATATCATTC 58.280 37.037 5.32 0.00 35.82 2.67
2950 5153 2.642311 TGGTCCATAAGCTCCACAAAGA 59.358 45.455 0.00 0.00 0.00 2.52
2954 5157 1.408683 GCATGGTCCATAAGCTCCACA 60.409 52.381 3.38 0.00 32.60 4.17
2961 5164 5.443185 AATCATTTCGCATGGTCCATAAG 57.557 39.130 3.38 1.66 0.00 1.73
2988 5191 1.299976 CTCTTGGCCACCCTGGTAC 59.700 63.158 3.88 0.00 40.46 3.34
3016 5220 3.449227 CCTCGCTGTCGCCACCTA 61.449 66.667 0.00 0.00 35.26 3.08
3028 5232 1.536284 CCATAACCTCTTCGTCCTCGC 60.536 57.143 0.00 0.00 36.96 5.03
3030 5234 2.362717 CCTCCATAACCTCTTCGTCCTC 59.637 54.545 0.00 0.00 0.00 3.71
3034 5238 1.749634 CGACCTCCATAACCTCTTCGT 59.250 52.381 0.00 0.00 0.00 3.85
3098 5302 2.368875 TCACTTTGTCCTCCCTTGACTC 59.631 50.000 0.00 0.00 33.83 3.36
3099 5303 2.370189 CTCACTTTGTCCTCCCTTGACT 59.630 50.000 0.00 0.00 33.83 3.41
3100 5304 2.551071 CCTCACTTTGTCCTCCCTTGAC 60.551 54.545 0.00 0.00 0.00 3.18
3101 5305 1.699634 CCTCACTTTGTCCTCCCTTGA 59.300 52.381 0.00 0.00 0.00 3.02
3102 5306 1.884067 GCCTCACTTTGTCCTCCCTTG 60.884 57.143 0.00 0.00 0.00 3.61
3103 5307 0.402121 GCCTCACTTTGTCCTCCCTT 59.598 55.000 0.00 0.00 0.00 3.95
3104 5308 1.831652 CGCCTCACTTTGTCCTCCCT 61.832 60.000 0.00 0.00 0.00 4.20
3107 5311 2.035442 GGCGCCTCACTTTGTCCTC 61.035 63.158 22.15 0.00 0.00 3.71
3130 5334 1.899814 TGGAGTTGCTCTTACGGACAT 59.100 47.619 0.00 0.00 0.00 3.06
3137 5341 0.321298 GCCCGTTGGAGTTGCTCTTA 60.321 55.000 0.00 0.00 0.00 2.10
3140 5344 3.056328 GGCCCGTTGGAGTTGCTC 61.056 66.667 0.00 0.00 0.00 4.26
3143 5347 3.047877 GTCGGCCCGTTGGAGTTG 61.048 66.667 1.63 0.00 0.00 3.16
3144 5348 4.324991 GGTCGGCCCGTTGGAGTT 62.325 66.667 1.63 0.00 0.00 3.01
3161 5365 3.189010 AAAAGCGCCGTCCGTTTGG 62.189 57.895 2.29 0.00 39.53 3.28
3162 5366 2.008697 CAAAAGCGCCGTCCGTTTG 61.009 57.895 2.29 1.85 39.53 2.93
3163 5367 2.330041 CAAAAGCGCCGTCCGTTT 59.670 55.556 2.29 0.00 42.34 3.60
3164 5368 2.888998 GACAAAAGCGCCGTCCGTT 61.889 57.895 2.29 0.00 39.71 4.44
3165 5369 3.343421 GACAAAAGCGCCGTCCGT 61.343 61.111 2.29 0.00 39.71 4.69
3166 5370 4.084888 GGACAAAAGCGCCGTCCG 62.085 66.667 16.93 0.65 39.86 4.79
3168 5372 0.454452 GAATGGACAAAAGCGCCGTC 60.454 55.000 2.29 6.02 0.00 4.79
3169 5373 0.889186 AGAATGGACAAAAGCGCCGT 60.889 50.000 2.29 0.00 0.00 5.68
3170 5374 0.240945 AAGAATGGACAAAAGCGCCG 59.759 50.000 2.29 0.00 0.00 6.46
3171 5375 2.438868 AAAGAATGGACAAAAGCGCC 57.561 45.000 2.29 0.00 0.00 6.53
3172 5376 5.287035 CAGATAAAAGAATGGACAAAAGCGC 59.713 40.000 0.00 0.00 0.00 5.92
3173 5377 6.381801 ACAGATAAAAGAATGGACAAAAGCG 58.618 36.000 0.00 0.00 0.00 4.68
3174 5378 8.490355 CAAACAGATAAAAGAATGGACAAAAGC 58.510 33.333 0.00 0.00 0.00 3.51
3175 5379 8.981647 CCAAACAGATAAAAGAATGGACAAAAG 58.018 33.333 0.00 0.00 0.00 2.27
3176 5380 7.930865 CCCAAACAGATAAAAGAATGGACAAAA 59.069 33.333 0.00 0.00 0.00 2.44
3177 5381 7.070571 ACCCAAACAGATAAAAGAATGGACAAA 59.929 33.333 0.00 0.00 0.00 2.83
3178 5382 6.553100 ACCCAAACAGATAAAAGAATGGACAA 59.447 34.615 0.00 0.00 0.00 3.18
3179 5383 6.074648 ACCCAAACAGATAAAAGAATGGACA 58.925 36.000 0.00 0.00 0.00 4.02
3180 5384 6.590234 ACCCAAACAGATAAAAGAATGGAC 57.410 37.500 0.00 0.00 0.00 4.02
3181 5385 5.414454 CGACCCAAACAGATAAAAGAATGGA 59.586 40.000 0.00 0.00 0.00 3.41
3182 5386 5.393027 CCGACCCAAACAGATAAAAGAATGG 60.393 44.000 0.00 0.00 0.00 3.16
3183 5387 5.640732 CCGACCCAAACAGATAAAAGAATG 58.359 41.667 0.00 0.00 0.00 2.67
3184 5388 4.157840 GCCGACCCAAACAGATAAAAGAAT 59.842 41.667 0.00 0.00 0.00 2.40
3185 5389 3.504520 GCCGACCCAAACAGATAAAAGAA 59.495 43.478 0.00 0.00 0.00 2.52
3186 5390 3.078837 GCCGACCCAAACAGATAAAAGA 58.921 45.455 0.00 0.00 0.00 2.52
3187 5391 2.163613 GGCCGACCCAAACAGATAAAAG 59.836 50.000 0.00 0.00 0.00 2.27
3188 5392 2.164338 GGCCGACCCAAACAGATAAAA 58.836 47.619 0.00 0.00 0.00 1.52
3189 5393 1.828979 GGCCGACCCAAACAGATAAA 58.171 50.000 0.00 0.00 0.00 1.40
3190 5394 3.562397 GGCCGACCCAAACAGATAA 57.438 52.632 0.00 0.00 0.00 1.75
3204 5408 4.841861 TTTATGTCCGCCGGGCCG 62.842 66.667 21.46 21.46 0.00 6.13
3205 5409 2.203294 ATTTATGTCCGCCGGGCC 60.203 61.111 14.55 0.00 0.00 5.80
3206 5410 1.822186 ACATTTATGTCCGCCGGGC 60.822 57.895 9.54 9.54 35.87 6.13
3207 5411 4.551729 ACATTTATGTCCGCCGGG 57.448 55.556 1.90 0.00 35.87 5.73
3215 5419 2.027192 ACACAGCTCCGGACATTTATGT 60.027 45.455 0.00 0.00 45.16 2.29
3216 5420 2.632377 ACACAGCTCCGGACATTTATG 58.368 47.619 0.00 0.00 0.00 1.90
3217 5421 3.350219 AACACAGCTCCGGACATTTAT 57.650 42.857 0.00 0.00 0.00 1.40
3218 5422 2.811431 CAAACACAGCTCCGGACATTTA 59.189 45.455 0.00 0.00 0.00 1.40
3219 5423 1.608590 CAAACACAGCTCCGGACATTT 59.391 47.619 0.00 0.00 0.00 2.32
3220 5424 1.238439 CAAACACAGCTCCGGACATT 58.762 50.000 0.00 0.00 0.00 2.71
3221 5425 1.237285 GCAAACACAGCTCCGGACAT 61.237 55.000 0.00 0.00 0.00 3.06
3222 5426 1.891919 GCAAACACAGCTCCGGACA 60.892 57.895 0.00 0.00 0.00 4.02
3223 5427 2.946762 GCAAACACAGCTCCGGAC 59.053 61.111 0.00 0.00 0.00 4.79
3224 5428 2.664851 CGCAAACACAGCTCCGGA 60.665 61.111 2.93 2.93 0.00 5.14
3225 5429 2.954753 GACGCAAACACAGCTCCGG 61.955 63.158 0.00 0.00 0.00 5.14
3226 5430 2.551270 GACGCAAACACAGCTCCG 59.449 61.111 0.00 0.00 0.00 4.63
3227 5431 2.551270 CGACGCAAACACAGCTCC 59.449 61.111 0.00 0.00 0.00 4.70
3228 5432 2.551270 CCGACGCAAACACAGCTC 59.449 61.111 0.00 0.00 0.00 4.09
3229 5433 3.649986 GCCGACGCAAACACAGCT 61.650 61.111 0.00 0.00 34.03 4.24
3253 5457 3.723348 GTCGGACAAGCGTTGGGC 61.723 66.667 2.62 0.00 44.05 5.36
3254 5458 3.047877 GGTCGGACAAGCGTTGGG 61.048 66.667 10.76 0.00 34.12 4.12
3255 5459 3.047877 GGGTCGGACAAGCGTTGG 61.048 66.667 10.76 0.00 34.12 3.77
3256 5460 1.234615 AATGGGTCGGACAAGCGTTG 61.235 55.000 10.76 0.00 0.00 4.10
3257 5461 0.536460 AAATGGGTCGGACAAGCGTT 60.536 50.000 10.76 0.00 0.00 4.84
3258 5462 0.536460 AAAATGGGTCGGACAAGCGT 60.536 50.000 10.76 0.00 0.00 5.07
3259 5463 1.444836 TAAAATGGGTCGGACAAGCG 58.555 50.000 10.76 0.00 0.00 4.68
3260 5464 2.099098 CCATAAAATGGGTCGGACAAGC 59.901 50.000 10.76 0.00 46.86 4.01
3327 5531 8.937884 GTGGCCGGTTTTTATGTTTAATTAAAT 58.062 29.630 13.54 1.99 0.00 1.40
3328 5532 7.115947 CGTGGCCGGTTTTTATGTTTAATTAAA 59.884 33.333 6.54 6.54 0.00 1.52
3329 5533 6.585322 CGTGGCCGGTTTTTATGTTTAATTAA 59.415 34.615 1.90 0.00 0.00 1.40
3330 5534 6.072286 TCGTGGCCGGTTTTTATGTTTAATTA 60.072 34.615 1.90 0.00 33.95 1.40
3331 5535 4.924462 CGTGGCCGGTTTTTATGTTTAATT 59.076 37.500 1.90 0.00 0.00 1.40
3332 5536 4.217983 TCGTGGCCGGTTTTTATGTTTAAT 59.782 37.500 1.90 0.00 33.95 1.40
3333 5537 3.567164 TCGTGGCCGGTTTTTATGTTTAA 59.433 39.130 1.90 0.00 33.95 1.52
3334 5538 3.144506 TCGTGGCCGGTTTTTATGTTTA 58.855 40.909 1.90 0.00 33.95 2.01
3335 5539 1.955080 TCGTGGCCGGTTTTTATGTTT 59.045 42.857 1.90 0.00 33.95 2.83
3336 5540 1.606903 TCGTGGCCGGTTTTTATGTT 58.393 45.000 1.90 0.00 33.95 2.71
3337 5541 1.538075 CTTCGTGGCCGGTTTTTATGT 59.462 47.619 1.90 0.00 33.95 2.29
3338 5542 1.135517 CCTTCGTGGCCGGTTTTTATG 60.136 52.381 1.90 0.00 33.95 1.90
3339 5543 1.170442 CCTTCGTGGCCGGTTTTTAT 58.830 50.000 1.90 0.00 33.95 1.40
3340 5544 2.631427 CCTTCGTGGCCGGTTTTTA 58.369 52.632 1.90 0.00 33.95 1.52
3341 5545 3.439008 CCTTCGTGGCCGGTTTTT 58.561 55.556 1.90 0.00 33.95 1.94
3351 5555 3.788766 CTTTCGCCGGCCTTCGTG 61.789 66.667 23.46 5.48 37.11 4.35
3352 5556 4.309950 ACTTTCGCCGGCCTTCGT 62.310 61.111 23.46 10.70 37.11 3.85
3353 5557 3.488090 GACTTTCGCCGGCCTTCG 61.488 66.667 23.46 6.82 38.88 3.79
3354 5558 3.125573 GGACTTTCGCCGGCCTTC 61.126 66.667 23.46 9.81 0.00 3.46
3355 5559 1.906105 TATGGACTTTCGCCGGCCTT 61.906 55.000 23.46 5.53 0.00 4.35
3356 5560 1.696097 ATATGGACTTTCGCCGGCCT 61.696 55.000 23.46 0.00 0.00 5.19
3357 5561 0.818040 AATATGGACTTTCGCCGGCC 60.818 55.000 23.46 4.99 0.00 6.13
3358 5562 1.529865 GTAATATGGACTTTCGCCGGC 59.470 52.381 19.07 19.07 0.00 6.13
3359 5563 2.828877 TGTAATATGGACTTTCGCCGG 58.171 47.619 0.00 0.00 0.00 6.13
3360 5564 6.533819 TTAATGTAATATGGACTTTCGCCG 57.466 37.500 0.00 0.00 0.00 6.46
3387 5591 8.490355 CGTCGTCTAGTTTTTACCTTTTTATGT 58.510 33.333 0.00 0.00 0.00 2.29
3388 5592 7.476492 GCGTCGTCTAGTTTTTACCTTTTTATG 59.524 37.037 0.00 0.00 0.00 1.90
3389 5593 7.513132 GCGTCGTCTAGTTTTTACCTTTTTAT 58.487 34.615 0.00 0.00 0.00 1.40
3390 5594 6.345723 CGCGTCGTCTAGTTTTTACCTTTTTA 60.346 38.462 0.00 0.00 0.00 1.52
3391 5595 5.556947 CGCGTCGTCTAGTTTTTACCTTTTT 60.557 40.000 0.00 0.00 0.00 1.94
3392 5596 4.084900 CGCGTCGTCTAGTTTTTACCTTTT 60.085 41.667 0.00 0.00 0.00 2.27
3393 5597 3.426525 CGCGTCGTCTAGTTTTTACCTTT 59.573 43.478 0.00 0.00 0.00 3.11
3394 5598 2.982470 CGCGTCGTCTAGTTTTTACCTT 59.018 45.455 0.00 0.00 0.00 3.50
3395 5599 2.589014 CGCGTCGTCTAGTTTTTACCT 58.411 47.619 0.00 0.00 0.00 3.08
3396 5600 1.058270 GCGCGTCGTCTAGTTTTTACC 59.942 52.381 8.43 0.00 0.00 2.85
3397 5601 1.981533 AGCGCGTCGTCTAGTTTTTAC 59.018 47.619 8.43 0.00 0.00 2.01
3398 5602 1.980844 CAGCGCGTCGTCTAGTTTTTA 59.019 47.619 8.43 0.00 0.00 1.52
3399 5603 0.782384 CAGCGCGTCGTCTAGTTTTT 59.218 50.000 8.43 0.00 0.00 1.94
3400 5604 1.615107 GCAGCGCGTCGTCTAGTTTT 61.615 55.000 8.43 0.00 0.00 2.43
3401 5605 2.087009 GCAGCGCGTCGTCTAGTTT 61.087 57.895 8.43 0.00 0.00 2.66
3402 5606 2.504244 GCAGCGCGTCGTCTAGTT 60.504 61.111 8.43 0.00 0.00 2.24
3403 5607 4.477975 GGCAGCGCGTCGTCTAGT 62.478 66.667 8.43 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.