Multiple sequence alignment - TraesCS7A01G106000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G106000 chr7A 100.000 3434 0 0 1 3434 64532860 64529427 0.000000e+00 6342.0
1 TraesCS7A01G106000 chr7A 96.163 2450 75 10 690 3122 64590776 64593223 0.000000e+00 3986.0
2 TraesCS7A01G106000 chr7A 96.270 563 20 1 1 562 662974051 662973489 0.000000e+00 922.0
3 TraesCS7A01G106000 chr7A 93.333 45 3 0 630 674 564620815 564620771 2.210000e-07 67.6
4 TraesCS7A01G106000 chr7B 92.553 1786 100 17 918 2679 2749054 2750830 0.000000e+00 2531.0
5 TraesCS7A01G106000 chr7B 90.129 1317 108 3 1121 2437 2663086 2664380 0.000000e+00 1692.0
6 TraesCS7A01G106000 chr7B 96.092 563 21 1 1 562 746334804 746334242 0.000000e+00 917.0
7 TraesCS7A01G106000 chr7B 85.036 274 30 7 859 1122 2660793 2661065 5.650000e-68 268.0
8 TraesCS7A01G106000 chr7D 90.351 1907 135 24 865 2753 60148223 60146348 0.000000e+00 2457.0
9 TraesCS7A01G106000 chr7D 89.086 678 67 4 1823 2500 60234619 60235289 0.000000e+00 835.0
10 TraesCS7A01G106000 chr7D 95.181 83 3 1 726 807 60148329 60148247 2.780000e-26 130.0
11 TraesCS7A01G106000 chr1B 96.803 563 17 1 1 562 41980969 41980407 0.000000e+00 939.0
12 TraesCS7A01G106000 chr1B 95.915 563 22 1 1 562 683140789 683141351 0.000000e+00 911.0
13 TraesCS7A01G106000 chr6B 96.270 563 20 1 1 562 132896953 132897515 0.000000e+00 922.0
14 TraesCS7A01G106000 chr3B 96.270 563 20 1 1 562 25492178 25491616 0.000000e+00 922.0
15 TraesCS7A01G106000 chr3A 96.270 563 20 1 1 562 219809052 219808490 0.000000e+00 922.0
16 TraesCS7A01G106000 chr2B 96.270 563 20 1 1 562 335191424 335190862 0.000000e+00 922.0
17 TraesCS7A01G106000 chr2B 89.394 198 21 0 1239 1436 172889529 172889726 2.050000e-62 250.0
18 TraesCS7A01G106000 chr2A 96.270 563 19 2 1 562 64330666 64330105 0.000000e+00 922.0
19 TraesCS7A01G106000 chr2A 84.810 79 7 1 622 695 707207497 707207419 1.320000e-09 75.0
20 TraesCS7A01G106000 chr3D 89.761 293 25 2 1291 1583 376810571 376810858 1.510000e-98 370.0
21 TraesCS7A01G106000 chr3D 89.474 57 6 0 625 681 20753020 20752964 4.750000e-09 73.1
22 TraesCS7A01G106000 chr2D 92.222 90 7 0 1295 1384 35548415 35548326 1.000000e-25 128.0
23 TraesCS7A01G106000 chr4A 92.593 54 2 2 557 608 737193495 737193442 3.670000e-10 76.8
24 TraesCS7A01G106000 chr6A 82.927 82 13 1 594 675 140039299 140039379 4.750000e-09 73.1
25 TraesCS7A01G106000 chr1D 83.117 77 13 0 599 675 388718888 388718812 1.710000e-08 71.3
26 TraesCS7A01G106000 chr1D 95.238 42 2 0 557 598 175765642 175765601 2.210000e-07 67.6
27 TraesCS7A01G106000 chr5A 93.478 46 3 0 630 675 489919158 489919203 6.150000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G106000 chr7A 64529427 64532860 3433 True 6342.0 6342 100.0000 1 3434 1 chr7A.!!$R1 3433
1 TraesCS7A01G106000 chr7A 64590776 64593223 2447 False 3986.0 3986 96.1630 690 3122 1 chr7A.!!$F1 2432
2 TraesCS7A01G106000 chr7A 662973489 662974051 562 True 922.0 922 96.2700 1 562 1 chr7A.!!$R3 561
3 TraesCS7A01G106000 chr7B 2749054 2750830 1776 False 2531.0 2531 92.5530 918 2679 1 chr7B.!!$F1 1761
4 TraesCS7A01G106000 chr7B 2660793 2664380 3587 False 980.0 1692 87.5825 859 2437 2 chr7B.!!$F2 1578
5 TraesCS7A01G106000 chr7B 746334242 746334804 562 True 917.0 917 96.0920 1 562 1 chr7B.!!$R1 561
6 TraesCS7A01G106000 chr7D 60146348 60148329 1981 True 1293.5 2457 92.7660 726 2753 2 chr7D.!!$R1 2027
7 TraesCS7A01G106000 chr7D 60234619 60235289 670 False 835.0 835 89.0860 1823 2500 1 chr7D.!!$F1 677
8 TraesCS7A01G106000 chr1B 41980407 41980969 562 True 939.0 939 96.8030 1 562 1 chr1B.!!$R1 561
9 TraesCS7A01G106000 chr1B 683140789 683141351 562 False 911.0 911 95.9150 1 562 1 chr1B.!!$F1 561
10 TraesCS7A01G106000 chr6B 132896953 132897515 562 False 922.0 922 96.2700 1 562 1 chr6B.!!$F1 561
11 TraesCS7A01G106000 chr3B 25491616 25492178 562 True 922.0 922 96.2700 1 562 1 chr3B.!!$R1 561
12 TraesCS7A01G106000 chr3A 219808490 219809052 562 True 922.0 922 96.2700 1 562 1 chr3A.!!$R1 561
13 TraesCS7A01G106000 chr2B 335190862 335191424 562 True 922.0 922 96.2700 1 562 1 chr2B.!!$R1 561
14 TraesCS7A01G106000 chr2A 64330105 64330666 561 True 922.0 922 96.2700 1 562 1 chr2A.!!$R1 561

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
112 113 0.180406 AGTGTGAGTCGCCAGGTTTT 59.820 50.0 0.23 0.0 0.0 2.43 F
646 648 0.325602 ACGGCCGACCCAAAAGAATA 59.674 50.0 35.90 0.0 0.0 1.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1905 3945 1.007038 GTAGGTGACGACGTTGCCA 60.007 57.895 19.27 0.0 0.0 4.92 R
2765 4847 2.006805 TGCATTCATCCCCAACACAA 57.993 45.000 0.00 0.0 0.0 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 3.095912 TCTCTGACCCGTCCTTTATCA 57.904 47.619 0.00 0.00 0.00 2.15
73 74 2.789339 GCGAAAGAGTTGTTTCTTTGCC 59.211 45.455 5.80 0.00 45.00 4.52
112 113 0.180406 AGTGTGAGTCGCCAGGTTTT 59.820 50.000 0.23 0.00 0.00 2.43
156 157 5.048083 CCTTTTGGCTTAGATACTTGTTGCA 60.048 40.000 0.00 0.00 0.00 4.08
226 227 6.069029 ACCATTTACTAAGTAGGGCCTCATTT 60.069 38.462 10.74 5.78 0.00 2.32
235 236 1.147817 AGGGCCTCATTTTTGACCTGT 59.852 47.619 0.00 0.00 0.00 4.00
301 302 1.377202 GCTCCATTTGGTCAGCCGA 60.377 57.895 0.00 0.00 37.67 5.54
316 318 6.152661 TGGTCAGCCGATATTTTTCTTTTCAT 59.847 34.615 0.00 0.00 37.67 2.57
491 493 1.676006 CCAACTGCTCAACCGTTTCTT 59.324 47.619 0.00 0.00 0.00 2.52
506 508 3.491104 CGTTTCTTTAGCCGCTCCTCTAT 60.491 47.826 0.00 0.00 0.00 1.98
542 544 4.202070 TGCAATGGTGAGACGTCGATAATA 60.202 41.667 10.46 0.00 0.00 0.98
544 546 5.233476 GCAATGGTGAGACGTCGATAATAAA 59.767 40.000 10.46 0.00 0.00 1.40
573 575 9.793259 GGTATTCCCAGATATCACTAAATTTCA 57.207 33.333 5.32 0.00 0.00 2.69
597 599 9.914131 TCATCTAGATGTGATTTAGTAAATCCG 57.086 33.333 27.80 10.55 40.59 4.18
598 600 9.914131 CATCTAGATGTGATTTAGTAAATCCGA 57.086 33.333 25.76 15.94 45.23 4.55
614 616 9.720769 AGTAAATCCGATATAAAATACAGGGTG 57.279 33.333 0.00 0.00 0.00 4.61
615 617 7.996098 AAATCCGATATAAAATACAGGGTGG 57.004 36.000 0.00 0.00 0.00 4.61
616 618 6.945636 ATCCGATATAAAATACAGGGTGGA 57.054 37.500 0.00 0.00 0.00 4.02
617 619 6.945636 TCCGATATAAAATACAGGGTGGAT 57.054 37.500 0.00 0.00 0.00 3.41
618 620 8.618240 ATCCGATATAAAATACAGGGTGGATA 57.382 34.615 0.00 0.00 30.00 2.59
619 621 8.618240 TCCGATATAAAATACAGGGTGGATAT 57.382 34.615 0.00 0.00 0.00 1.63
620 622 9.053472 TCCGATATAAAATACAGGGTGGATATT 57.947 33.333 0.00 0.00 0.00 1.28
621 623 9.109393 CCGATATAAAATACAGGGTGGATATTG 57.891 37.037 0.00 0.00 0.00 1.90
622 624 9.109393 CGATATAAAATACAGGGTGGATATTGG 57.891 37.037 0.00 0.00 0.00 3.16
623 625 9.408648 GATATAAAATACAGGGTGGATATTGGG 57.591 37.037 0.00 0.00 0.00 4.12
624 626 3.525800 AATACAGGGTGGATATTGGGC 57.474 47.619 0.00 0.00 0.00 5.36
625 627 0.762418 TACAGGGTGGATATTGGGCG 59.238 55.000 0.00 0.00 0.00 6.13
626 628 1.228245 CAGGGTGGATATTGGGCGG 60.228 63.158 0.00 0.00 0.00 6.13
627 629 1.385347 AGGGTGGATATTGGGCGGA 60.385 57.895 0.00 0.00 0.00 5.54
628 630 1.228154 GGGTGGATATTGGGCGGAC 60.228 63.158 0.00 0.00 0.00 4.79
629 631 1.597027 GGTGGATATTGGGCGGACG 60.597 63.158 0.00 0.00 0.00 4.79
630 632 1.597027 GTGGATATTGGGCGGACGG 60.597 63.158 0.00 0.00 0.00 4.79
631 633 2.668550 GGATATTGGGCGGACGGC 60.669 66.667 9.97 9.97 42.51 5.68
642 644 3.053896 GGACGGCCGACCCAAAAG 61.054 66.667 35.90 0.00 0.00 2.27
643 645 2.031465 GACGGCCGACCCAAAAGA 59.969 61.111 35.90 0.00 0.00 2.52
644 646 1.598685 GACGGCCGACCCAAAAGAA 60.599 57.895 35.90 0.00 0.00 2.52
645 647 0.958876 GACGGCCGACCCAAAAGAAT 60.959 55.000 35.90 3.54 0.00 2.40
646 648 0.325602 ACGGCCGACCCAAAAGAATA 59.674 50.000 35.90 0.00 0.00 1.75
647 649 1.271488 ACGGCCGACCCAAAAGAATAA 60.271 47.619 35.90 0.00 0.00 1.40
648 650 1.813786 CGGCCGACCCAAAAGAATAAA 59.186 47.619 24.07 0.00 0.00 1.40
649 651 2.229302 CGGCCGACCCAAAAGAATAAAA 59.771 45.455 24.07 0.00 0.00 1.52
650 652 3.305471 CGGCCGACCCAAAAGAATAAAAA 60.305 43.478 24.07 0.00 0.00 1.94
651 653 4.242475 GGCCGACCCAAAAGAATAAAAAG 58.758 43.478 0.00 0.00 0.00 2.27
652 654 3.678072 GCCGACCCAAAAGAATAAAAAGC 59.322 43.478 0.00 0.00 0.00 3.51
653 655 3.917985 CCGACCCAAAAGAATAAAAAGCG 59.082 43.478 0.00 0.00 0.00 4.68
654 656 3.917985 CGACCCAAAAGAATAAAAAGCGG 59.082 43.478 0.00 0.00 0.00 5.52
655 657 4.320641 CGACCCAAAAGAATAAAAAGCGGA 60.321 41.667 0.00 0.00 0.00 5.54
656 658 4.878439 ACCCAAAAGAATAAAAAGCGGAC 58.122 39.130 0.00 0.00 0.00 4.79
657 659 3.917985 CCCAAAAGAATAAAAAGCGGACG 59.082 43.478 0.00 0.00 0.00 4.79
658 660 4.320641 CCCAAAAGAATAAAAAGCGGACGA 60.321 41.667 0.00 0.00 0.00 4.20
659 661 5.216648 CCAAAAGAATAAAAAGCGGACGAA 58.783 37.500 0.00 0.00 0.00 3.85
660 662 5.688176 CCAAAAGAATAAAAAGCGGACGAAA 59.312 36.000 0.00 0.00 0.00 3.46
661 663 6.364976 CCAAAAGAATAAAAAGCGGACGAAAT 59.635 34.615 0.00 0.00 0.00 2.17
662 664 7.410407 CCAAAAGAATAAAAAGCGGACGAAATC 60.410 37.037 0.00 0.00 0.00 2.17
663 665 5.873179 AGAATAAAAAGCGGACGAAATCA 57.127 34.783 0.00 0.00 0.00 2.57
664 666 6.436843 AGAATAAAAAGCGGACGAAATCAT 57.563 33.333 0.00 0.00 0.00 2.45
665 667 6.487103 AGAATAAAAAGCGGACGAAATCATC 58.513 36.000 0.00 0.00 0.00 2.92
676 678 3.715618 CGAAATCATCGTCCGTTTGAA 57.284 42.857 0.00 0.00 46.52 2.69
677 679 4.258935 CGAAATCATCGTCCGTTTGAAT 57.741 40.909 0.00 0.00 46.52 2.57
678 680 4.263800 CGAAATCATCGTCCGTTTGAATC 58.736 43.478 0.00 2.51 46.52 2.52
679 681 3.925688 AATCATCGTCCGTTTGAATCG 57.074 42.857 0.00 0.00 0.00 3.34
680 682 2.357327 TCATCGTCCGTTTGAATCGT 57.643 45.000 0.00 0.00 0.00 3.73
681 683 2.679450 TCATCGTCCGTTTGAATCGTT 58.321 42.857 0.00 0.00 0.00 3.85
682 684 2.410392 TCATCGTCCGTTTGAATCGTTG 59.590 45.455 0.00 0.00 0.00 4.10
683 685 1.141645 TCGTCCGTTTGAATCGTTGG 58.858 50.000 0.00 0.00 0.00 3.77
684 686 1.141645 CGTCCGTTTGAATCGTTGGA 58.858 50.000 0.00 0.00 0.00 3.53
685 687 1.126113 CGTCCGTTTGAATCGTTGGAG 59.874 52.381 0.00 0.00 0.00 3.86
686 688 2.140717 GTCCGTTTGAATCGTTGGAGT 58.859 47.619 0.00 0.00 0.00 3.85
687 689 2.546789 GTCCGTTTGAATCGTTGGAGTT 59.453 45.455 0.00 0.00 0.00 3.01
688 690 2.546368 TCCGTTTGAATCGTTGGAGTTG 59.454 45.455 0.00 0.00 0.00 3.16
689 691 2.307049 CGTTTGAATCGTTGGAGTTGC 58.693 47.619 0.00 0.00 0.00 4.17
690 692 2.032030 CGTTTGAATCGTTGGAGTTGCT 60.032 45.455 0.00 0.00 0.00 3.91
691 693 3.555518 GTTTGAATCGTTGGAGTTGCTC 58.444 45.455 0.00 0.00 0.00 4.26
1662 3702 2.365105 CTCCCCAACGCCCTCCTA 60.365 66.667 0.00 0.00 0.00 2.94
1698 3738 1.153901 CCGCAACTACGTCGTGGAT 60.154 57.895 16.24 0.00 31.75 3.41
1905 3945 1.487558 ACCCACGTCAACAACTACCTT 59.512 47.619 0.00 0.00 0.00 3.50
2512 4577 2.826428 CCTCTCTCTCTCTCTCACTCG 58.174 57.143 0.00 0.00 0.00 4.18
2724 4806 2.140792 AACCGCCGGCCTCTATCAT 61.141 57.895 23.46 0.00 0.00 2.45
2755 4837 2.884207 GCGCTACCGTGCACCTAC 60.884 66.667 12.15 0.00 45.76 3.18
2756 4838 2.578713 CGCTACCGTGCACCTACG 60.579 66.667 12.15 4.64 43.35 3.51
2762 4844 1.593209 CCGTGCACCTACGTGTGTT 60.593 57.895 12.15 0.00 42.39 3.32
2765 4847 1.062880 CGTGCACCTACGTGTGTTTTT 59.937 47.619 12.15 0.00 42.39 1.94
2798 4880 6.570672 GATGAATGCATCCAATATGTGTCT 57.429 37.500 1.68 0.00 44.12 3.41
2818 4929 7.543868 TGTGTCTTTTGAATGTTGACGATTTTT 59.456 29.630 0.00 0.00 0.00 1.94
2839 4950 7.604657 TTTTTGGGTATTACTGTTCCACATT 57.395 32.000 0.00 0.00 0.00 2.71
2840 4951 6.827586 TTTGGGTATTACTGTTCCACATTC 57.172 37.500 0.00 0.00 0.00 2.67
2841 4952 4.850680 TGGGTATTACTGTTCCACATTCC 58.149 43.478 0.00 0.00 0.00 3.01
2842 4953 4.538490 TGGGTATTACTGTTCCACATTCCT 59.462 41.667 0.00 0.00 0.00 3.36
2843 4954 5.014755 TGGGTATTACTGTTCCACATTCCTT 59.985 40.000 0.00 0.00 0.00 3.36
2844 4955 5.357032 GGGTATTACTGTTCCACATTCCTTG 59.643 44.000 0.00 0.00 0.00 3.61
2851 4962 5.944007 ACTGTTCCACATTCCTTGGTATTAC 59.056 40.000 0.00 0.00 35.42 1.89
2879 4990 4.141413 CCACATTCCTTGGATGACCTATCA 60.141 45.833 0.00 0.00 39.83 2.15
2885 4996 6.078456 TCCTTGGATGACCTATCAAAACAT 57.922 37.500 0.00 0.00 38.69 2.71
2891 5002 6.723515 TGGATGACCTATCAAAACATTGGAAA 59.276 34.615 0.00 0.00 38.69 3.13
2950 5061 5.359756 TCAAATGATATCACTTCGTGGAGG 58.640 41.667 7.78 0.00 33.87 4.30
2977 5088 4.460731 TGGACCATGCGAAATGATTTTGTA 59.539 37.500 6.98 2.87 0.00 2.41
2980 5091 7.014134 TGGACCATGCGAAATGATTTTGTATAT 59.986 33.333 8.16 1.37 29.66 0.86
2981 5092 7.867403 GGACCATGCGAAATGATTTTGTATATT 59.133 33.333 8.16 0.00 29.66 1.28
2982 5093 8.578308 ACCATGCGAAATGATTTTGTATATTG 57.422 30.769 8.16 4.11 29.66 1.90
3018 5129 1.021202 CAGAAACAAGGTGGCGACAA 58.979 50.000 0.00 0.00 46.06 3.18
3033 5144 1.578206 GACAACAAGGGCGAAGAGGC 61.578 60.000 0.00 0.00 45.91 4.70
3035 5146 1.302832 AACAAGGGCGAAGAGGCTG 60.303 57.895 0.00 0.00 45.89 4.85
3036 5147 1.768684 AACAAGGGCGAAGAGGCTGA 61.769 55.000 0.00 0.00 45.89 4.26
3037 5148 1.003355 CAAGGGCGAAGAGGCTGAA 60.003 57.895 0.00 0.00 45.89 3.02
3092 5208 0.472925 TTGGCACCTACAGACAGGGA 60.473 55.000 0.00 0.00 40.29 4.20
3112 5228 2.665185 GACAAAGTGAGGCGCCGT 60.665 61.111 23.20 11.16 0.00 5.68
3128 5244 3.645975 GTGGGTGTCCGCAACGTG 61.646 66.667 0.00 0.00 42.90 4.49
3129 5245 4.164087 TGGGTGTCCGCAACGTGT 62.164 61.111 0.00 0.00 35.24 4.49
3130 5246 3.343421 GGGTGTCCGCAACGTGTC 61.343 66.667 0.00 0.00 31.79 3.67
3131 5247 3.343421 GGTGTCCGCAACGTGTCC 61.343 66.667 0.00 0.00 0.00 4.02
3132 5248 3.698463 GTGTCCGCAACGTGTCCG 61.698 66.667 0.00 0.00 40.83 4.79
3159 5275 9.904647 CACGGATGCAAATTTAATCTAAAATTG 57.095 29.630 11.03 3.59 40.03 2.32
3160 5276 9.097257 ACGGATGCAAATTTAATCTAAAATTGG 57.903 29.630 11.03 0.76 38.40 3.16
3161 5277 9.097257 CGGATGCAAATTTAATCTAAAATTGGT 57.903 29.630 11.03 0.00 38.40 3.67
3171 5287 5.859205 ATCTAAAATTGGTCTGAATGGGC 57.141 39.130 0.00 0.00 0.00 5.36
3172 5288 4.023291 TCTAAAATTGGTCTGAATGGGCC 58.977 43.478 0.00 0.00 0.00 5.80
3173 5289 2.323999 AAATTGGTCTGAATGGGCCA 57.676 45.000 9.61 9.61 0.00 5.36
3174 5290 2.323999 AATTGGTCTGAATGGGCCAA 57.676 45.000 11.89 3.02 43.95 4.52
3175 5291 2.323999 ATTGGTCTGAATGGGCCAAA 57.676 45.000 11.89 0.00 43.19 3.28
3176 5292 1.631405 TTGGTCTGAATGGGCCAAAG 58.369 50.000 11.89 9.24 37.97 2.77
3177 5293 0.899717 TGGTCTGAATGGGCCAAAGC 60.900 55.000 11.89 3.14 38.76 3.51
3178 5294 1.508088 GTCTGAATGGGCCAAAGCG 59.492 57.895 11.89 0.00 41.24 4.68
3179 5295 1.678635 TCTGAATGGGCCAAAGCGG 60.679 57.895 11.89 8.28 41.24 5.52
3180 5296 1.678635 CTGAATGGGCCAAAGCGGA 60.679 57.895 11.89 0.00 41.24 5.54
3181 5297 1.937546 CTGAATGGGCCAAAGCGGAC 61.938 60.000 11.89 0.00 45.59 4.79
3195 5311 3.782042 GGACATCCGTTCGTCTGC 58.218 61.111 0.00 0.00 32.57 4.26
3196 5312 1.080093 GGACATCCGTTCGTCTGCA 60.080 57.895 0.00 0.00 32.57 4.41
3197 5313 0.460284 GGACATCCGTTCGTCTGCAT 60.460 55.000 0.00 0.00 32.57 3.96
3198 5314 0.924090 GACATCCGTTCGTCTGCATC 59.076 55.000 0.00 0.00 0.00 3.91
3199 5315 0.802222 ACATCCGTTCGTCTGCATCG 60.802 55.000 5.29 5.29 0.00 3.84
3200 5316 1.878522 ATCCGTTCGTCTGCATCGC 60.879 57.895 6.57 0.00 0.00 4.58
3201 5317 3.554692 CCGTTCGTCTGCATCGCC 61.555 66.667 6.57 0.54 0.00 5.54
3202 5318 3.902063 CGTTCGTCTGCATCGCCG 61.902 66.667 6.57 7.45 0.00 6.46
3203 5319 4.210304 GTTCGTCTGCATCGCCGC 62.210 66.667 6.57 0.00 0.00 6.53
3204 5320 4.435436 TTCGTCTGCATCGCCGCT 62.435 61.111 6.57 0.00 0.00 5.52
3205 5321 3.932580 TTCGTCTGCATCGCCGCTT 62.933 57.895 6.57 0.00 0.00 4.68
3206 5322 3.490759 CGTCTGCATCGCCGCTTT 61.491 61.111 0.00 0.00 0.00 3.51
3207 5323 2.164663 CGTCTGCATCGCCGCTTTA 61.165 57.895 0.00 0.00 0.00 1.85
3208 5324 1.348594 GTCTGCATCGCCGCTTTAC 59.651 57.895 0.00 0.00 0.00 2.01
3209 5325 1.079474 TCTGCATCGCCGCTTTACA 60.079 52.632 0.00 0.00 0.00 2.41
3210 5326 1.060937 CTGCATCGCCGCTTTACAC 59.939 57.895 0.00 0.00 0.00 2.90
3211 5327 2.309764 CTGCATCGCCGCTTTACACC 62.310 60.000 0.00 0.00 0.00 4.16
3212 5328 2.701006 CATCGCCGCTTTACACCG 59.299 61.111 0.00 0.00 0.00 4.94
3213 5329 2.098233 CATCGCCGCTTTACACCGT 61.098 57.895 0.00 0.00 0.00 4.83
3214 5330 2.098233 ATCGCCGCTTTACACCGTG 61.098 57.895 0.00 0.00 0.00 4.94
3215 5331 2.495366 ATCGCCGCTTTACACCGTGA 62.495 55.000 5.28 0.00 0.00 4.35
3216 5332 2.098233 CGCCGCTTTACACCGTGAT 61.098 57.895 5.28 0.00 0.00 3.06
3217 5333 1.632046 CGCCGCTTTACACCGTGATT 61.632 55.000 5.28 0.00 0.00 2.57
3218 5334 0.519961 GCCGCTTTACACCGTGATTT 59.480 50.000 5.28 0.00 0.00 2.17
3219 5335 1.068816 GCCGCTTTACACCGTGATTTT 60.069 47.619 5.28 0.00 0.00 1.82
3220 5336 2.846693 CCGCTTTACACCGTGATTTTC 58.153 47.619 5.28 0.00 0.00 2.29
3221 5337 2.492001 CGCTTTACACCGTGATTTTCG 58.508 47.619 5.28 0.00 0.00 3.46
3222 5338 2.096614 CGCTTTACACCGTGATTTTCGT 60.097 45.455 5.28 0.00 0.00 3.85
3223 5339 3.476181 GCTTTACACCGTGATTTTCGTC 58.524 45.455 5.28 0.00 0.00 4.20
3224 5340 3.666111 GCTTTACACCGTGATTTTCGTCC 60.666 47.826 5.28 0.00 0.00 4.79
3225 5341 1.700523 TACACCGTGATTTTCGTCCG 58.299 50.000 5.28 0.00 0.00 4.79
3226 5342 0.249573 ACACCGTGATTTTCGTCCGT 60.250 50.000 5.28 0.00 0.00 4.69
3227 5343 0.162933 CACCGTGATTTTCGTCCGTG 59.837 55.000 0.00 0.00 0.00 4.94
3228 5344 1.131826 CCGTGATTTTCGTCCGTGC 59.868 57.895 0.00 0.00 0.00 5.34
3229 5345 1.561717 CCGTGATTTTCGTCCGTGCA 61.562 55.000 0.00 0.00 0.00 4.57
3230 5346 0.233590 CGTGATTTTCGTCCGTGCAA 59.766 50.000 0.00 0.00 0.00 4.08
3231 5347 1.333347 CGTGATTTTCGTCCGTGCAAA 60.333 47.619 0.00 0.00 0.00 3.68
3232 5348 2.722071 GTGATTTTCGTCCGTGCAAAA 58.278 42.857 0.00 0.00 0.00 2.44
3233 5349 3.109619 GTGATTTTCGTCCGTGCAAAAA 58.890 40.909 0.00 0.00 0.00 1.94
3276 5392 4.749245 AAAATACAGACGCTGAAGTTGG 57.251 40.909 12.77 0.00 35.18 3.77
3277 5393 3.678056 AATACAGACGCTGAAGTTGGA 57.322 42.857 12.77 0.00 35.18 3.53
3278 5394 3.895232 ATACAGACGCTGAAGTTGGAT 57.105 42.857 12.77 0.00 35.18 3.41
3279 5395 5.339008 AATACAGACGCTGAAGTTGGATA 57.661 39.130 12.77 0.00 35.18 2.59
3280 5396 2.960819 ACAGACGCTGAAGTTGGATAC 58.039 47.619 12.77 0.00 35.18 2.24
3281 5397 2.563179 ACAGACGCTGAAGTTGGATACT 59.437 45.455 12.77 0.00 35.06 2.12
3282 5398 3.182967 CAGACGCTGAAGTTGGATACTC 58.817 50.000 1.18 0.00 35.54 2.59
3283 5399 3.093057 AGACGCTGAAGTTGGATACTCT 58.907 45.455 0.00 0.00 35.54 3.24
3284 5400 3.119316 AGACGCTGAAGTTGGATACTCTG 60.119 47.826 0.00 0.00 35.54 3.35
3285 5401 2.093973 ACGCTGAAGTTGGATACTCTGG 60.094 50.000 0.00 0.00 35.54 3.86
3286 5402 2.739932 CGCTGAAGTTGGATACTCTGGG 60.740 54.545 0.00 0.00 35.54 4.45
3287 5403 2.911484 CTGAAGTTGGATACTCTGGGC 58.089 52.381 0.00 0.00 35.54 5.36
3288 5404 1.207089 TGAAGTTGGATACTCTGGGCG 59.793 52.381 0.00 0.00 35.54 6.13
3289 5405 1.480954 GAAGTTGGATACTCTGGGCGA 59.519 52.381 0.00 0.00 35.54 5.54
3290 5406 1.794714 AGTTGGATACTCTGGGCGAT 58.205 50.000 0.00 0.00 28.23 4.58
3291 5407 1.414181 AGTTGGATACTCTGGGCGATG 59.586 52.381 0.00 0.00 28.23 3.84
3292 5408 0.758734 TTGGATACTCTGGGCGATGG 59.241 55.000 0.00 0.00 37.61 3.51
3293 5409 1.004440 GGATACTCTGGGCGATGGC 60.004 63.158 0.00 0.00 38.90 4.40
3294 5410 1.748403 GATACTCTGGGCGATGGCA 59.252 57.895 1.01 0.00 42.47 4.92
3295 5411 0.322975 GATACTCTGGGCGATGGCAT 59.677 55.000 0.00 0.00 42.47 4.40
3296 5412 1.550524 GATACTCTGGGCGATGGCATA 59.449 52.381 0.00 0.00 42.47 3.14
3297 5413 1.419381 TACTCTGGGCGATGGCATAA 58.581 50.000 0.00 0.00 42.47 1.90
3298 5414 0.546122 ACTCTGGGCGATGGCATAAA 59.454 50.000 0.00 0.00 42.47 1.40
3299 5415 1.143684 ACTCTGGGCGATGGCATAAAT 59.856 47.619 0.00 0.00 42.47 1.40
3300 5416 2.371841 ACTCTGGGCGATGGCATAAATA 59.628 45.455 0.00 0.00 42.47 1.40
3301 5417 3.005554 CTCTGGGCGATGGCATAAATAG 58.994 50.000 0.00 0.00 42.47 1.73
3302 5418 2.086869 CTGGGCGATGGCATAAATAGG 58.913 52.381 0.00 0.00 42.47 2.57
3303 5419 0.811281 GGGCGATGGCATAAATAGGC 59.189 55.000 0.00 2.31 42.47 3.93
3304 5420 1.533625 GGCGATGGCATAAATAGGCA 58.466 50.000 0.00 0.00 45.98 4.75
3305 5421 1.200020 GGCGATGGCATAAATAGGCAC 59.800 52.381 0.00 0.00 44.68 5.01
3306 5422 1.879380 GCGATGGCATAAATAGGCACA 59.121 47.619 0.00 0.00 44.68 4.57
3307 5423 2.350772 GCGATGGCATAAATAGGCACAC 60.351 50.000 0.00 0.00 44.68 3.82
3308 5424 2.877786 CGATGGCATAAATAGGCACACA 59.122 45.455 0.00 0.00 44.68 3.72
3309 5425 3.503363 CGATGGCATAAATAGGCACACAT 59.497 43.478 0.00 0.00 44.68 3.21
3310 5426 4.694982 CGATGGCATAAATAGGCACACATA 59.305 41.667 0.00 0.00 44.68 2.29
3311 5427 5.181056 CGATGGCATAAATAGGCACACATAA 59.819 40.000 0.00 0.00 44.68 1.90
3312 5428 6.579666 ATGGCATAAATAGGCACACATAAG 57.420 37.500 0.00 0.00 44.68 1.73
3313 5429 4.278170 TGGCATAAATAGGCACACATAAGC 59.722 41.667 0.00 0.00 36.56 3.09
3314 5430 4.520492 GGCATAAATAGGCACACATAAGCT 59.480 41.667 0.00 0.00 34.14 3.74
3315 5431 5.010012 GGCATAAATAGGCACACATAAGCTT 59.990 40.000 3.48 3.48 34.14 3.74
3316 5432 5.916883 GCATAAATAGGCACACATAAGCTTG 59.083 40.000 9.86 0.00 32.47 4.01
3317 5433 4.989279 AAATAGGCACACATAAGCTTGG 57.011 40.909 9.86 3.63 0.00 3.61
3318 5434 3.931907 ATAGGCACACATAAGCTTGGA 57.068 42.857 9.86 0.00 0.00 3.53
3319 5435 2.119801 AGGCACACATAAGCTTGGAG 57.880 50.000 9.86 2.54 0.00 3.86
3320 5436 1.630369 AGGCACACATAAGCTTGGAGA 59.370 47.619 9.86 0.00 0.00 3.71
3321 5437 2.040278 AGGCACACATAAGCTTGGAGAA 59.960 45.455 9.86 0.00 0.00 2.87
3322 5438 2.421424 GGCACACATAAGCTTGGAGAAG 59.579 50.000 9.86 0.00 0.00 2.85
3323 5439 3.338249 GCACACATAAGCTTGGAGAAGA 58.662 45.455 9.86 0.00 0.00 2.87
3324 5440 3.126000 GCACACATAAGCTTGGAGAAGAC 59.874 47.826 9.86 0.00 0.00 3.01
3325 5441 4.318332 CACACATAAGCTTGGAGAAGACA 58.682 43.478 9.86 0.00 0.00 3.41
3326 5442 4.756642 CACACATAAGCTTGGAGAAGACAA 59.243 41.667 9.86 0.00 0.00 3.18
3327 5443 4.757149 ACACATAAGCTTGGAGAAGACAAC 59.243 41.667 9.86 0.00 0.00 3.32
3328 5444 4.756642 CACATAAGCTTGGAGAAGACAACA 59.243 41.667 9.86 0.00 0.00 3.33
3329 5445 5.239306 CACATAAGCTTGGAGAAGACAACAA 59.761 40.000 9.86 0.00 0.00 2.83
3330 5446 6.006449 ACATAAGCTTGGAGAAGACAACAAT 58.994 36.000 9.86 0.00 0.00 2.71
3331 5447 7.119699 CACATAAGCTTGGAGAAGACAACAATA 59.880 37.037 9.86 0.00 0.00 1.90
3332 5448 7.665559 ACATAAGCTTGGAGAAGACAACAATAA 59.334 33.333 9.86 0.00 0.00 1.40
3333 5449 6.959639 AAGCTTGGAGAAGACAACAATAAA 57.040 33.333 0.00 0.00 0.00 1.40
3334 5450 6.319141 AGCTTGGAGAAGACAACAATAAAC 57.681 37.500 0.00 0.00 0.00 2.01
3335 5451 5.049405 AGCTTGGAGAAGACAACAATAAACG 60.049 40.000 0.00 0.00 0.00 3.60
3336 5452 4.742438 TGGAGAAGACAACAATAAACGC 57.258 40.909 0.00 0.00 0.00 4.84
3337 5453 4.130857 TGGAGAAGACAACAATAAACGCA 58.869 39.130 0.00 0.00 0.00 5.24
3338 5454 4.024387 TGGAGAAGACAACAATAAACGCAC 60.024 41.667 0.00 0.00 0.00 5.34
3339 5455 4.024387 GGAGAAGACAACAATAAACGCACA 60.024 41.667 0.00 0.00 0.00 4.57
3340 5456 4.844267 AGAAGACAACAATAAACGCACAC 58.156 39.130 0.00 0.00 0.00 3.82
3341 5457 4.334203 AGAAGACAACAATAAACGCACACA 59.666 37.500 0.00 0.00 0.00 3.72
3342 5458 3.947626 AGACAACAATAAACGCACACAC 58.052 40.909 0.00 0.00 0.00 3.82
3343 5459 2.710760 ACAACAATAAACGCACACACG 58.289 42.857 0.00 0.00 39.50 4.49
3353 5469 2.027605 CACACACGTGCGAGGACT 59.972 61.111 17.22 0.00 36.06 3.85
3354 5470 2.016704 CACACACGTGCGAGGACTC 61.017 63.158 17.22 0.00 36.06 3.36
3355 5471 2.335011 CACACGTGCGAGGACTCA 59.665 61.111 17.22 0.00 0.00 3.41
3356 5472 1.299850 CACACGTGCGAGGACTCAA 60.300 57.895 17.22 0.00 0.00 3.02
3357 5473 1.007271 ACACGTGCGAGGACTCAAG 60.007 57.895 17.22 0.00 0.00 3.02
3358 5474 1.007271 CACGTGCGAGGACTCAAGT 60.007 57.895 0.82 0.00 0.00 3.16
3359 5475 0.597637 CACGTGCGAGGACTCAAGTT 60.598 55.000 0.82 0.00 0.00 2.66
3360 5476 0.104304 ACGTGCGAGGACTCAAGTTT 59.896 50.000 0.00 0.00 0.00 2.66
3361 5477 0.508641 CGTGCGAGGACTCAAGTTTG 59.491 55.000 0.00 0.00 0.00 2.93
3362 5478 1.865865 GTGCGAGGACTCAAGTTTGA 58.134 50.000 0.00 0.00 35.57 2.69
3363 5479 1.527311 GTGCGAGGACTCAAGTTTGAC 59.473 52.381 0.00 0.00 32.90 3.18
3364 5480 1.138069 TGCGAGGACTCAAGTTTGACA 59.862 47.619 0.00 0.00 32.90 3.58
3365 5481 2.210116 GCGAGGACTCAAGTTTGACAA 58.790 47.619 0.00 0.00 32.90 3.18
3366 5482 2.032808 GCGAGGACTCAAGTTTGACAAC 60.033 50.000 0.00 0.00 32.90 3.32
3367 5483 3.194861 CGAGGACTCAAGTTTGACAACA 58.805 45.455 0.00 0.00 35.05 3.33
3368 5484 3.621268 CGAGGACTCAAGTTTGACAACAA 59.379 43.478 0.00 0.00 35.05 2.83
3369 5485 4.273480 CGAGGACTCAAGTTTGACAACAAT 59.727 41.667 0.00 0.00 35.85 2.71
3370 5486 5.465390 CGAGGACTCAAGTTTGACAACAATA 59.535 40.000 0.00 0.00 35.85 1.90
3371 5487 6.018262 CGAGGACTCAAGTTTGACAACAATAA 60.018 38.462 0.00 0.00 35.85 1.40
3372 5488 7.466725 CGAGGACTCAAGTTTGACAACAATAAA 60.467 37.037 0.00 0.00 35.85 1.40
3373 5489 7.480810 AGGACTCAAGTTTGACAACAATAAAC 58.519 34.615 0.00 0.00 35.85 2.01
3374 5490 7.122055 AGGACTCAAGTTTGACAACAATAAACA 59.878 33.333 0.00 0.00 36.91 2.83
3375 5491 7.220108 GGACTCAAGTTTGACAACAATAAACAC 59.780 37.037 0.00 0.00 36.91 3.32
3376 5492 7.598278 ACTCAAGTTTGACAACAATAAACACA 58.402 30.769 0.00 0.00 36.91 3.72
3377 5493 7.754924 ACTCAAGTTTGACAACAATAAACACAG 59.245 33.333 0.00 0.00 36.91 3.66
3378 5494 7.598278 TCAAGTTTGACAACAATAAACACAGT 58.402 30.769 0.00 0.00 36.91 3.55
3379 5495 8.731605 TCAAGTTTGACAACAATAAACACAGTA 58.268 29.630 0.00 0.00 36.91 2.74
3380 5496 9.347934 CAAGTTTGACAACAATAAACACAGTAA 57.652 29.630 0.00 0.00 36.91 2.24
3381 5497 8.905103 AGTTTGACAACAATAAACACAGTAAC 57.095 30.769 0.00 0.00 36.91 2.50
3382 5498 7.694784 AGTTTGACAACAATAAACACAGTAACG 59.305 33.333 0.00 0.00 36.91 3.18
3383 5499 6.665474 TGACAACAATAAACACAGTAACGT 57.335 33.333 0.00 0.00 0.00 3.99
3384 5500 6.479436 TGACAACAATAAACACAGTAACGTG 58.521 36.000 0.00 0.00 42.81 4.49
3385 5501 5.812652 ACAACAATAAACACAGTAACGTGG 58.187 37.500 0.00 0.00 41.38 4.94
3386 5502 5.354792 ACAACAATAAACACAGTAACGTGGT 59.645 36.000 0.00 0.00 41.38 4.16
3387 5503 5.412526 ACAATAAACACAGTAACGTGGTG 57.587 39.130 0.00 0.00 41.38 4.17
3388 5504 5.117584 ACAATAAACACAGTAACGTGGTGA 58.882 37.500 14.35 0.00 41.38 4.02
3389 5505 5.006941 ACAATAAACACAGTAACGTGGTGAC 59.993 40.000 14.35 0.50 41.38 3.67
3390 5506 2.676632 AACACAGTAACGTGGTGACA 57.323 45.000 14.35 0.00 41.38 3.58
3391 5507 2.902705 ACACAGTAACGTGGTGACAT 57.097 45.000 14.35 0.00 46.14 3.06
3392 5508 4.325028 AACACAGTAACGTGGTGACATA 57.675 40.909 14.35 0.00 46.14 2.29
3393 5509 4.325028 ACACAGTAACGTGGTGACATAA 57.675 40.909 14.35 0.00 46.14 1.90
3394 5510 4.695396 ACACAGTAACGTGGTGACATAAA 58.305 39.130 14.35 0.00 46.14 1.40
3395 5511 5.302360 ACACAGTAACGTGGTGACATAAAT 58.698 37.500 14.35 0.00 46.14 1.40
3396 5512 5.761234 ACACAGTAACGTGGTGACATAAATT 59.239 36.000 14.35 0.00 46.14 1.82
3397 5513 6.261381 ACACAGTAACGTGGTGACATAAATTT 59.739 34.615 14.35 0.00 46.14 1.82
3398 5514 6.577055 CACAGTAACGTGGTGACATAAATTTG 59.423 38.462 0.00 0.00 46.14 2.32
3399 5515 5.567534 CAGTAACGTGGTGACATAAATTTGC 59.432 40.000 0.00 0.00 46.14 3.68
3400 5516 3.569250 ACGTGGTGACATAAATTTGCC 57.431 42.857 0.00 0.00 46.14 4.52
3401 5517 3.153919 ACGTGGTGACATAAATTTGCCT 58.846 40.909 0.00 0.00 46.14 4.75
3402 5518 3.057596 ACGTGGTGACATAAATTTGCCTG 60.058 43.478 0.00 0.00 46.14 4.85
3403 5519 3.057596 CGTGGTGACATAAATTTGCCTGT 60.058 43.478 0.00 1.91 46.14 4.00
3404 5520 4.485163 GTGGTGACATAAATTTGCCTGTC 58.515 43.478 16.98 16.98 46.14 3.51
3405 5521 4.022416 GTGGTGACATAAATTTGCCTGTCA 60.022 41.667 20.21 20.21 46.14 3.58
3406 5522 4.771577 TGGTGACATAAATTTGCCTGTCAT 59.228 37.500 23.86 0.44 46.73 3.06
3407 5523 5.948758 TGGTGACATAAATTTGCCTGTCATA 59.051 36.000 23.86 17.42 46.73 2.15
3408 5524 6.127758 TGGTGACATAAATTTGCCTGTCATAC 60.128 38.462 23.86 20.80 46.73 2.39
3409 5525 6.127758 GGTGACATAAATTTGCCTGTCATACA 60.128 38.462 23.86 9.26 46.73 2.29
3410 5526 7.312154 GTGACATAAATTTGCCTGTCATACAA 58.688 34.615 23.86 8.60 46.73 2.41
3411 5527 7.273381 GTGACATAAATTTGCCTGTCATACAAC 59.727 37.037 23.86 13.91 46.73 3.32
3412 5528 7.176515 TGACATAAATTTGCCTGTCATACAACT 59.823 33.333 20.21 0.00 42.12 3.16
3413 5529 8.574251 ACATAAATTTGCCTGTCATACAACTA 57.426 30.769 0.00 0.00 0.00 2.24
3414 5530 8.458843 ACATAAATTTGCCTGTCATACAACTAC 58.541 33.333 0.00 0.00 0.00 2.73
3415 5531 5.897377 AATTTGCCTGTCATACAACTACC 57.103 39.130 0.00 0.00 0.00 3.18
3416 5532 3.343941 TTGCCTGTCATACAACTACCC 57.656 47.619 0.00 0.00 0.00 3.69
3417 5533 1.206132 TGCCTGTCATACAACTACCCG 59.794 52.381 0.00 0.00 0.00 5.28
3418 5534 1.479323 GCCTGTCATACAACTACCCGA 59.521 52.381 0.00 0.00 0.00 5.14
3419 5535 2.102588 GCCTGTCATACAACTACCCGAT 59.897 50.000 0.00 0.00 0.00 4.18
3420 5536 3.799232 GCCTGTCATACAACTACCCGATC 60.799 52.174 0.00 0.00 0.00 3.69
3421 5537 3.383505 CCTGTCATACAACTACCCGATCA 59.616 47.826 0.00 0.00 0.00 2.92
3422 5538 4.142026 CCTGTCATACAACTACCCGATCAA 60.142 45.833 0.00 0.00 0.00 2.57
3423 5539 5.006153 TGTCATACAACTACCCGATCAAG 57.994 43.478 0.00 0.00 0.00 3.02
3424 5540 4.707934 TGTCATACAACTACCCGATCAAGA 59.292 41.667 0.00 0.00 0.00 3.02
3425 5541 5.041940 GTCATACAACTACCCGATCAAGAC 58.958 45.833 0.00 0.00 0.00 3.01
3426 5542 4.098960 TCATACAACTACCCGATCAAGACC 59.901 45.833 0.00 0.00 0.00 3.85
3427 5543 2.537143 ACAACTACCCGATCAAGACCT 58.463 47.619 0.00 0.00 0.00 3.85
3428 5544 2.233922 ACAACTACCCGATCAAGACCTG 59.766 50.000 0.00 0.00 0.00 4.00
3429 5545 0.824759 ACTACCCGATCAAGACCTGC 59.175 55.000 0.00 0.00 0.00 4.85
3430 5546 0.824109 CTACCCGATCAAGACCTGCA 59.176 55.000 0.00 0.00 0.00 4.41
3431 5547 1.414181 CTACCCGATCAAGACCTGCAT 59.586 52.381 0.00 0.00 0.00 3.96
3432 5548 0.179000 ACCCGATCAAGACCTGCATC 59.821 55.000 0.00 0.00 0.00 3.91
3433 5549 0.533755 CCCGATCAAGACCTGCATCC 60.534 60.000 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 0.179040 TTTCGCTTTGGGTCTTCCGT 60.179 50.000 0.00 0.00 38.76 4.69
41 42 2.495084 ACTCTTTCGCTTTGGGTCTTC 58.505 47.619 0.00 0.00 0.00 2.87
112 113 1.473257 GCGGTGTCTCAGGCATATTGA 60.473 52.381 0.00 0.00 0.00 2.57
235 236 2.580322 TGGCCTTGGAATTCATGACCTA 59.420 45.455 3.32 0.00 0.00 3.08
301 302 9.813446 GCAAGGAGATGATGAAAAGAAAAATAT 57.187 29.630 0.00 0.00 0.00 1.28
316 318 4.927049 AGATTCTTTTGGCAAGGAGATGA 58.073 39.130 13.80 3.80 0.00 2.92
491 493 2.808919 AGCATATAGAGGAGCGGCTAA 58.191 47.619 0.60 0.00 0.00 3.09
506 508 2.025981 ACCATTGCAGAGTGGAAGCATA 60.026 45.455 18.29 0.00 38.19 3.14
588 590 9.720769 CACCCTGTATTTTATATCGGATTTACT 57.279 33.333 0.00 0.00 0.00 2.24
589 591 8.943002 CCACCCTGTATTTTATATCGGATTTAC 58.057 37.037 0.00 0.00 0.00 2.01
590 592 8.882282 TCCACCCTGTATTTTATATCGGATTTA 58.118 33.333 0.00 0.00 0.00 1.40
591 593 7.751646 TCCACCCTGTATTTTATATCGGATTT 58.248 34.615 0.00 0.00 0.00 2.17
592 594 7.324388 TCCACCCTGTATTTTATATCGGATT 57.676 36.000 0.00 0.00 0.00 3.01
593 595 6.945636 TCCACCCTGTATTTTATATCGGAT 57.054 37.500 0.00 0.00 0.00 4.18
594 596 6.945636 ATCCACCCTGTATTTTATATCGGA 57.054 37.500 0.00 0.00 0.00 4.55
595 597 9.109393 CAATATCCACCCTGTATTTTATATCGG 57.891 37.037 0.00 0.00 0.00 4.18
596 598 9.109393 CCAATATCCACCCTGTATTTTATATCG 57.891 37.037 0.00 0.00 0.00 2.92
597 599 9.408648 CCCAATATCCACCCTGTATTTTATATC 57.591 37.037 0.00 0.00 0.00 1.63
598 600 7.839200 GCCCAATATCCACCCTGTATTTTATAT 59.161 37.037 0.00 0.00 0.00 0.86
599 601 7.179269 GCCCAATATCCACCCTGTATTTTATA 58.821 38.462 0.00 0.00 0.00 0.98
600 602 6.016555 GCCCAATATCCACCCTGTATTTTAT 58.983 40.000 0.00 0.00 0.00 1.40
601 603 5.390387 GCCCAATATCCACCCTGTATTTTA 58.610 41.667 0.00 0.00 0.00 1.52
602 604 4.223144 GCCCAATATCCACCCTGTATTTT 58.777 43.478 0.00 0.00 0.00 1.82
603 605 3.750599 CGCCCAATATCCACCCTGTATTT 60.751 47.826 0.00 0.00 0.00 1.40
604 606 2.224769 CGCCCAATATCCACCCTGTATT 60.225 50.000 0.00 0.00 0.00 1.89
605 607 1.351017 CGCCCAATATCCACCCTGTAT 59.649 52.381 0.00 0.00 0.00 2.29
606 608 0.762418 CGCCCAATATCCACCCTGTA 59.238 55.000 0.00 0.00 0.00 2.74
607 609 1.531748 CGCCCAATATCCACCCTGT 59.468 57.895 0.00 0.00 0.00 4.00
608 610 1.228245 CCGCCCAATATCCACCCTG 60.228 63.158 0.00 0.00 0.00 4.45
609 611 1.385347 TCCGCCCAATATCCACCCT 60.385 57.895 0.00 0.00 0.00 4.34
610 612 1.228154 GTCCGCCCAATATCCACCC 60.228 63.158 0.00 0.00 0.00 4.61
611 613 1.597027 CGTCCGCCCAATATCCACC 60.597 63.158 0.00 0.00 0.00 4.61
612 614 1.597027 CCGTCCGCCCAATATCCAC 60.597 63.158 0.00 0.00 0.00 4.02
613 615 2.825982 CCGTCCGCCCAATATCCA 59.174 61.111 0.00 0.00 0.00 3.41
614 616 2.668550 GCCGTCCGCCCAATATCC 60.669 66.667 0.00 0.00 0.00 2.59
625 627 3.053896 CTTTTGGGTCGGCCGTCC 61.054 66.667 30.31 30.31 34.97 4.79
626 628 0.958876 ATTCTTTTGGGTCGGCCGTC 60.959 55.000 27.15 20.62 34.97 4.79
627 629 0.325602 TATTCTTTTGGGTCGGCCGT 59.674 50.000 27.15 2.96 34.97 5.68
628 630 1.455248 TTATTCTTTTGGGTCGGCCG 58.545 50.000 22.12 22.12 34.97 6.13
629 631 3.945981 TTTTATTCTTTTGGGTCGGCC 57.054 42.857 0.00 0.00 0.00 6.13
630 632 3.678072 GCTTTTTATTCTTTTGGGTCGGC 59.322 43.478 0.00 0.00 0.00 5.54
631 633 3.917985 CGCTTTTTATTCTTTTGGGTCGG 59.082 43.478 0.00 0.00 0.00 4.79
632 634 3.917985 CCGCTTTTTATTCTTTTGGGTCG 59.082 43.478 0.00 0.00 0.00 4.79
633 635 4.921515 GTCCGCTTTTTATTCTTTTGGGTC 59.078 41.667 0.00 0.00 0.00 4.46
634 636 4.557895 CGTCCGCTTTTTATTCTTTTGGGT 60.558 41.667 0.00 0.00 0.00 4.51
635 637 3.917985 CGTCCGCTTTTTATTCTTTTGGG 59.082 43.478 0.00 0.00 0.00 4.12
636 638 4.789784 TCGTCCGCTTTTTATTCTTTTGG 58.210 39.130 0.00 0.00 0.00 3.28
637 639 6.741448 TTTCGTCCGCTTTTTATTCTTTTG 57.259 33.333 0.00 0.00 0.00 2.44
638 640 7.142680 TGATTTCGTCCGCTTTTTATTCTTTT 58.857 30.769 0.00 0.00 0.00 2.27
639 641 6.674066 TGATTTCGTCCGCTTTTTATTCTTT 58.326 32.000 0.00 0.00 0.00 2.52
640 642 6.249035 TGATTTCGTCCGCTTTTTATTCTT 57.751 33.333 0.00 0.00 0.00 2.52
641 643 5.873179 TGATTTCGTCCGCTTTTTATTCT 57.127 34.783 0.00 0.00 0.00 2.40
642 644 5.392585 CGATGATTTCGTCCGCTTTTTATTC 59.607 40.000 0.00 0.00 43.01 1.75
643 645 5.263185 CGATGATTTCGTCCGCTTTTTATT 58.737 37.500 0.00 0.00 43.01 1.40
644 646 4.833126 CGATGATTTCGTCCGCTTTTTAT 58.167 39.130 0.00 0.00 43.01 1.40
645 647 4.253352 CGATGATTTCGTCCGCTTTTTA 57.747 40.909 0.00 0.00 43.01 1.52
646 648 3.117434 CGATGATTTCGTCCGCTTTTT 57.883 42.857 0.00 0.00 43.01 1.94
647 649 2.806288 CGATGATTTCGTCCGCTTTT 57.194 45.000 0.00 0.00 43.01 2.27
656 658 7.395595 ACGATTCAAACGGACGATGATTTCG 62.396 44.000 20.90 20.90 43.18 3.46
657 659 4.201685 ACGATTCAAACGGACGATGATTTC 60.202 41.667 0.00 3.15 34.93 2.17
658 660 3.682858 ACGATTCAAACGGACGATGATTT 59.317 39.130 0.00 0.00 34.93 2.17
659 661 3.259064 ACGATTCAAACGGACGATGATT 58.741 40.909 0.00 0.00 34.93 2.57
660 662 2.888594 ACGATTCAAACGGACGATGAT 58.111 42.857 0.00 0.00 34.93 2.45
661 663 2.357327 ACGATTCAAACGGACGATGA 57.643 45.000 0.00 0.00 34.93 2.92
662 664 2.473868 CCAACGATTCAAACGGACGATG 60.474 50.000 0.00 0.00 34.93 3.84
663 665 1.730064 CCAACGATTCAAACGGACGAT 59.270 47.619 0.00 0.00 34.93 3.73
664 666 1.141645 CCAACGATTCAAACGGACGA 58.858 50.000 0.00 0.00 34.93 4.20
665 667 1.126113 CTCCAACGATTCAAACGGACG 59.874 52.381 0.00 0.00 34.93 4.79
666 668 2.140717 ACTCCAACGATTCAAACGGAC 58.859 47.619 0.00 0.00 34.93 4.79
667 669 2.536761 ACTCCAACGATTCAAACGGA 57.463 45.000 0.00 0.00 34.93 4.69
668 670 2.916111 CAACTCCAACGATTCAAACGG 58.084 47.619 0.00 0.00 34.93 4.44
669 671 2.032030 AGCAACTCCAACGATTCAAACG 60.032 45.455 0.00 0.00 0.00 3.60
670 672 3.251004 AGAGCAACTCCAACGATTCAAAC 59.749 43.478 0.00 0.00 0.00 2.93
671 673 3.476552 AGAGCAACTCCAACGATTCAAA 58.523 40.909 0.00 0.00 0.00 2.69
672 674 3.126001 AGAGCAACTCCAACGATTCAA 57.874 42.857 0.00 0.00 0.00 2.69
673 675 2.839486 AGAGCAACTCCAACGATTCA 57.161 45.000 0.00 0.00 0.00 2.57
674 676 5.220681 GGAATTAGAGCAACTCCAACGATTC 60.221 44.000 0.00 0.00 0.00 2.52
675 677 4.636206 GGAATTAGAGCAACTCCAACGATT 59.364 41.667 0.00 0.00 0.00 3.34
676 678 4.192317 GGAATTAGAGCAACTCCAACGAT 58.808 43.478 0.00 0.00 0.00 3.73
677 679 3.596214 GGAATTAGAGCAACTCCAACGA 58.404 45.455 0.00 0.00 0.00 3.85
678 680 2.348666 CGGAATTAGAGCAACTCCAACG 59.651 50.000 0.00 0.00 0.00 4.10
679 681 2.096013 GCGGAATTAGAGCAACTCCAAC 59.904 50.000 0.00 0.00 0.00 3.77
680 682 2.290008 TGCGGAATTAGAGCAACTCCAA 60.290 45.455 0.23 0.00 38.01 3.53
681 683 1.277842 TGCGGAATTAGAGCAACTCCA 59.722 47.619 0.23 0.00 38.01 3.86
682 684 2.024176 TGCGGAATTAGAGCAACTCC 57.976 50.000 0.23 0.00 38.01 3.85
683 685 2.219674 CGATGCGGAATTAGAGCAACTC 59.780 50.000 6.14 1.10 44.51 3.01
684 686 2.205074 CGATGCGGAATTAGAGCAACT 58.795 47.619 6.14 0.00 44.51 3.16
685 687 2.652662 CGATGCGGAATTAGAGCAAC 57.347 50.000 6.14 3.55 44.51 4.17
1875 3915 3.135994 GTTGACGTGGGTCTTGTTGTAT 58.864 45.455 0.00 0.00 43.79 2.29
1905 3945 1.007038 GTAGGTGACGACGTTGCCA 60.007 57.895 19.27 0.00 0.00 4.92
2762 4844 3.135348 TGCATTCATCCCCAACACAAAAA 59.865 39.130 0.00 0.00 0.00 1.94
2765 4847 2.006805 TGCATTCATCCCCAACACAA 57.993 45.000 0.00 0.00 0.00 3.33
2787 4869 7.802720 TCGTCAACATTCAAAAGACACATATTG 59.197 33.333 0.00 0.00 0.00 1.90
2790 4872 6.852858 TCGTCAACATTCAAAAGACACATA 57.147 33.333 0.00 0.00 0.00 2.29
2830 4941 5.944007 ACAGTAATACCAAGGAATGTGGAAC 59.056 40.000 0.00 0.00 39.62 3.62
2831 4942 6.134535 ACAGTAATACCAAGGAATGTGGAA 57.865 37.500 0.00 0.00 39.62 3.53
2832 4943 5.772393 ACAGTAATACCAAGGAATGTGGA 57.228 39.130 0.00 0.00 39.62 4.02
2833 4944 5.357032 GGAACAGTAATACCAAGGAATGTGG 59.643 44.000 0.00 0.00 42.28 4.17
2834 4945 5.943416 TGGAACAGTAATACCAAGGAATGTG 59.057 40.000 0.00 0.00 0.00 3.21
2835 4946 5.944007 GTGGAACAGTAATACCAAGGAATGT 59.056 40.000 0.00 0.00 41.80 2.71
2836 4947 5.943416 TGTGGAACAGTAATACCAAGGAATG 59.057 40.000 0.00 0.00 45.67 2.67
2837 4948 6.134535 TGTGGAACAGTAATACCAAGGAAT 57.865 37.500 0.00 0.00 45.67 3.01
2838 4949 5.570205 TGTGGAACAGTAATACCAAGGAA 57.430 39.130 0.00 0.00 45.67 3.36
2879 4990 5.935448 CGTTTACACGTTTCCAATGTTTT 57.065 34.783 0.00 0.00 41.84 2.43
2939 5050 1.553704 GGTCCATAACCTCCACGAAGT 59.446 52.381 0.00 0.00 45.45 3.01
2950 5061 4.836125 ATCATTTCGCATGGTCCATAAC 57.164 40.909 3.38 0.00 0.00 1.89
2977 5088 1.496429 CCTCTTGGCCACCCTCAATAT 59.504 52.381 3.88 0.00 0.00 1.28
2980 5091 3.170362 CCTCTTGGCCACCCTCAA 58.830 61.111 3.88 0.00 0.00 3.02
3006 5117 1.528309 CCCTTGTTGTCGCCACCTT 60.528 57.895 0.00 0.00 0.00 3.50
3018 5129 1.768684 TTCAGCCTCTTCGCCCTTGT 61.769 55.000 0.00 0.00 0.00 3.16
3020 5131 1.194781 TCTTCAGCCTCTTCGCCCTT 61.195 55.000 0.00 0.00 0.00 3.95
3024 5135 0.459411 GACCTCTTCAGCCTCTTCGC 60.459 60.000 0.00 0.00 0.00 4.70
3088 5199 0.402121 GCCTCACTTTGTCCTTCCCT 59.598 55.000 0.00 0.00 0.00 4.20
3089 5200 0.955919 CGCCTCACTTTGTCCTTCCC 60.956 60.000 0.00 0.00 0.00 3.97
3092 5208 1.600916 GGCGCCTCACTTTGTCCTT 60.601 57.895 22.15 0.00 0.00 3.36
3112 5228 4.164087 ACACGTTGCGGACACCCA 62.164 61.111 0.00 0.00 0.00 4.51
3115 5231 3.698463 CGGACACGTTGCGGACAC 61.698 66.667 0.00 0.00 34.92 3.67
3132 5248 8.603181 AATTTTAGATTAAATTTGCATCCGTGC 58.397 29.630 0.00 0.00 39.44 5.34
3133 5249 9.904647 CAATTTTAGATTAAATTTGCATCCGTG 57.095 29.630 0.00 0.00 35.98 4.94
3134 5250 9.097257 CCAATTTTAGATTAAATTTGCATCCGT 57.903 29.630 0.00 0.00 37.54 4.69
3135 5251 9.097257 ACCAATTTTAGATTAAATTTGCATCCG 57.903 29.630 0.00 0.00 37.54 4.18
3145 5261 8.257306 GCCCATTCAGACCAATTTTAGATTAAA 58.743 33.333 0.00 0.00 0.00 1.52
3146 5262 7.147742 GGCCCATTCAGACCAATTTTAGATTAA 60.148 37.037 0.00 0.00 0.00 1.40
3147 5263 6.323739 GGCCCATTCAGACCAATTTTAGATTA 59.676 38.462 0.00 0.00 0.00 1.75
3148 5264 5.129320 GGCCCATTCAGACCAATTTTAGATT 59.871 40.000 0.00 0.00 0.00 2.40
3149 5265 4.651045 GGCCCATTCAGACCAATTTTAGAT 59.349 41.667 0.00 0.00 0.00 1.98
3150 5266 4.023291 GGCCCATTCAGACCAATTTTAGA 58.977 43.478 0.00 0.00 0.00 2.10
3151 5267 3.768757 TGGCCCATTCAGACCAATTTTAG 59.231 43.478 0.00 0.00 0.00 1.85
3152 5268 3.784178 TGGCCCATTCAGACCAATTTTA 58.216 40.909 0.00 0.00 0.00 1.52
3153 5269 2.618794 TGGCCCATTCAGACCAATTTT 58.381 42.857 0.00 0.00 0.00 1.82
3154 5270 2.323999 TGGCCCATTCAGACCAATTT 57.676 45.000 0.00 0.00 0.00 1.82
3155 5271 2.323999 TTGGCCCATTCAGACCAATT 57.676 45.000 0.00 0.00 37.26 2.32
3156 5272 2.181975 CTTTGGCCCATTCAGACCAAT 58.818 47.619 0.00 0.00 41.59 3.16
3157 5273 1.631405 CTTTGGCCCATTCAGACCAA 58.369 50.000 0.00 0.00 40.34 3.67
3158 5274 0.899717 GCTTTGGCCCATTCAGACCA 60.900 55.000 0.00 0.00 0.00 4.02
3159 5275 1.893062 GCTTTGGCCCATTCAGACC 59.107 57.895 0.00 0.00 0.00 3.85
3160 5276 1.508088 CGCTTTGGCCCATTCAGAC 59.492 57.895 0.00 0.00 34.44 3.51
3161 5277 1.678635 CCGCTTTGGCCCATTCAGA 60.679 57.895 0.00 0.00 34.44 3.27
3162 5278 1.678635 TCCGCTTTGGCCCATTCAG 60.679 57.895 0.00 0.00 37.80 3.02
3163 5279 1.976474 GTCCGCTTTGGCCCATTCA 60.976 57.895 0.00 0.00 37.80 2.57
3164 5280 1.322538 ATGTCCGCTTTGGCCCATTC 61.323 55.000 0.00 0.00 37.80 2.67
3165 5281 1.305213 ATGTCCGCTTTGGCCCATT 60.305 52.632 0.00 0.00 37.80 3.16
3166 5282 1.754234 GATGTCCGCTTTGGCCCAT 60.754 57.895 0.00 0.00 37.80 4.00
3167 5283 2.361104 GATGTCCGCTTTGGCCCA 60.361 61.111 0.00 0.00 37.80 5.36
3168 5284 3.140814 GGATGTCCGCTTTGGCCC 61.141 66.667 0.00 0.00 37.80 5.80
3178 5294 0.460284 ATGCAGACGAACGGATGTCC 60.460 55.000 0.00 0.00 35.71 4.02
3179 5295 0.924090 GATGCAGACGAACGGATGTC 59.076 55.000 0.00 0.00 35.33 3.06
3180 5296 0.802222 CGATGCAGACGAACGGATGT 60.802 55.000 9.93 0.00 0.00 3.06
3181 5297 1.920051 CGATGCAGACGAACGGATG 59.080 57.895 9.93 0.00 0.00 3.51
3182 5298 1.878522 GCGATGCAGACGAACGGAT 60.879 57.895 17.88 0.00 0.00 4.18
3183 5299 2.506217 GCGATGCAGACGAACGGA 60.506 61.111 17.88 0.00 0.00 4.69
3184 5300 3.554692 GGCGATGCAGACGAACGG 61.555 66.667 17.88 0.00 0.00 4.44
3190 5306 1.348594 GTAAAGCGGCGATGCAGAC 59.651 57.895 12.98 0.00 37.31 3.51
3191 5307 1.079474 TGTAAAGCGGCGATGCAGA 60.079 52.632 12.98 0.00 37.31 4.26
3192 5308 1.060937 GTGTAAAGCGGCGATGCAG 59.939 57.895 12.98 0.00 37.31 4.41
3193 5309 2.395360 GGTGTAAAGCGGCGATGCA 61.395 57.895 12.98 1.46 37.31 3.96
3194 5310 2.403586 GGTGTAAAGCGGCGATGC 59.596 61.111 12.98 0.00 0.00 3.91
3195 5311 2.098233 ACGGTGTAAAGCGGCGATG 61.098 57.895 12.98 0.00 0.00 3.84
3196 5312 2.098233 CACGGTGTAAAGCGGCGAT 61.098 57.895 12.98 0.00 0.00 4.58
3197 5313 2.495366 ATCACGGTGTAAAGCGGCGA 62.495 55.000 12.98 5.44 0.00 5.54
3198 5314 1.632046 AATCACGGTGTAAAGCGGCG 61.632 55.000 9.67 0.51 0.00 6.46
3199 5315 0.519961 AAATCACGGTGTAAAGCGGC 59.480 50.000 9.67 0.00 0.00 6.53
3200 5316 2.723618 CGAAAATCACGGTGTAAAGCGG 60.724 50.000 9.67 0.00 0.00 5.52
3201 5317 2.096614 ACGAAAATCACGGTGTAAAGCG 60.097 45.455 8.17 2.23 34.93 4.68
3202 5318 3.476181 GACGAAAATCACGGTGTAAAGC 58.524 45.455 8.17 0.00 34.93 3.51
3203 5319 3.422603 CGGACGAAAATCACGGTGTAAAG 60.423 47.826 8.17 0.00 34.93 1.85
3204 5320 2.475864 CGGACGAAAATCACGGTGTAAA 59.524 45.455 8.17 0.00 34.93 2.01
3205 5321 2.060284 CGGACGAAAATCACGGTGTAA 58.940 47.619 8.17 0.00 34.93 2.41
3206 5322 1.000385 ACGGACGAAAATCACGGTGTA 60.000 47.619 8.17 0.00 34.93 2.90
3207 5323 0.249573 ACGGACGAAAATCACGGTGT 60.250 50.000 8.17 0.00 34.93 4.16
3208 5324 0.162933 CACGGACGAAAATCACGGTG 59.837 55.000 0.56 0.56 34.93 4.94
3209 5325 1.562575 GCACGGACGAAAATCACGGT 61.563 55.000 0.00 0.00 34.93 4.83
3210 5326 1.131826 GCACGGACGAAAATCACGG 59.868 57.895 0.00 0.00 34.93 4.94
3211 5327 0.233590 TTGCACGGACGAAAATCACG 59.766 50.000 0.00 0.00 0.00 4.35
3212 5328 2.392933 TTTGCACGGACGAAAATCAC 57.607 45.000 0.00 0.00 0.00 3.06
3213 5329 3.422417 TTTTTGCACGGACGAAAATCA 57.578 38.095 0.00 0.00 29.81 2.57
3254 5370 4.819630 TCCAACTTCAGCGTCTGTATTTTT 59.180 37.500 6.72 0.00 32.61 1.94
3255 5371 4.385825 TCCAACTTCAGCGTCTGTATTTT 58.614 39.130 6.72 0.00 32.61 1.82
3256 5372 4.002906 TCCAACTTCAGCGTCTGTATTT 57.997 40.909 6.72 0.00 32.61 1.40
3257 5373 3.678056 TCCAACTTCAGCGTCTGTATT 57.322 42.857 6.72 0.00 32.61 1.89
3258 5374 3.895232 ATCCAACTTCAGCGTCTGTAT 57.105 42.857 6.72 0.00 32.61 2.29
3259 5375 3.762288 AGTATCCAACTTCAGCGTCTGTA 59.238 43.478 6.72 0.00 33.35 2.74
3260 5376 2.563179 AGTATCCAACTTCAGCGTCTGT 59.437 45.455 6.72 0.00 33.35 3.41
3261 5377 3.119316 AGAGTATCCAACTTCAGCGTCTG 60.119 47.826 1.02 1.02 39.07 3.51
3262 5378 3.093057 AGAGTATCCAACTTCAGCGTCT 58.907 45.455 0.00 0.00 39.07 4.18
3263 5379 3.182967 CAGAGTATCCAACTTCAGCGTC 58.817 50.000 0.00 0.00 39.07 5.19
3264 5380 2.093973 CCAGAGTATCCAACTTCAGCGT 60.094 50.000 0.00 0.00 39.07 5.07
3265 5381 2.544685 CCAGAGTATCCAACTTCAGCG 58.455 52.381 0.00 0.00 39.07 5.18
3266 5382 2.911484 CCCAGAGTATCCAACTTCAGC 58.089 52.381 0.00 0.00 39.07 4.26
3267 5383 2.739932 CGCCCAGAGTATCCAACTTCAG 60.740 54.545 0.00 0.00 39.07 3.02
3268 5384 1.207089 CGCCCAGAGTATCCAACTTCA 59.793 52.381 0.00 0.00 39.07 3.02
3269 5385 1.480954 TCGCCCAGAGTATCCAACTTC 59.519 52.381 0.00 0.00 39.07 3.01
3270 5386 1.568504 TCGCCCAGAGTATCCAACTT 58.431 50.000 0.00 0.00 39.07 2.66
3271 5387 1.414181 CATCGCCCAGAGTATCCAACT 59.586 52.381 0.00 0.00 42.80 3.16
3272 5388 1.541233 CCATCGCCCAGAGTATCCAAC 60.541 57.143 0.00 0.00 33.66 3.77
3273 5389 0.758734 CCATCGCCCAGAGTATCCAA 59.241 55.000 0.00 0.00 33.66 3.53
3274 5390 1.758440 GCCATCGCCCAGAGTATCCA 61.758 60.000 0.00 0.00 33.66 3.41
3275 5391 1.004440 GCCATCGCCCAGAGTATCC 60.004 63.158 0.00 0.00 33.66 2.59
3276 5392 0.322975 ATGCCATCGCCCAGAGTATC 59.677 55.000 0.00 0.00 0.00 2.24
3277 5393 1.644509 TATGCCATCGCCCAGAGTAT 58.355 50.000 0.00 0.00 0.00 2.12
3278 5394 1.419381 TTATGCCATCGCCCAGAGTA 58.581 50.000 0.00 0.00 0.00 2.59
3279 5395 0.546122 TTTATGCCATCGCCCAGAGT 59.454 50.000 0.00 0.00 0.00 3.24
3280 5396 1.901591 ATTTATGCCATCGCCCAGAG 58.098 50.000 0.00 0.00 0.00 3.35
3281 5397 2.290260 CCTATTTATGCCATCGCCCAGA 60.290 50.000 0.00 0.00 0.00 3.86
3282 5398 2.086869 CCTATTTATGCCATCGCCCAG 58.913 52.381 0.00 0.00 0.00 4.45
3283 5399 1.886222 GCCTATTTATGCCATCGCCCA 60.886 52.381 0.00 0.00 0.00 5.36
3284 5400 0.811281 GCCTATTTATGCCATCGCCC 59.189 55.000 0.00 0.00 0.00 6.13
3285 5401 1.200020 GTGCCTATTTATGCCATCGCC 59.800 52.381 0.00 0.00 0.00 5.54
3286 5402 1.879380 TGTGCCTATTTATGCCATCGC 59.121 47.619 0.00 0.00 0.00 4.58
3287 5403 2.877786 TGTGTGCCTATTTATGCCATCG 59.122 45.455 0.00 0.00 0.00 3.84
3288 5404 6.573664 TTATGTGTGCCTATTTATGCCATC 57.426 37.500 0.00 0.00 0.00 3.51
3289 5405 5.047802 GCTTATGTGTGCCTATTTATGCCAT 60.048 40.000 0.00 0.00 0.00 4.40
3290 5406 4.278170 GCTTATGTGTGCCTATTTATGCCA 59.722 41.667 0.00 0.00 0.00 4.92
3291 5407 4.520492 AGCTTATGTGTGCCTATTTATGCC 59.480 41.667 0.00 0.00 0.00 4.40
3292 5408 5.695851 AGCTTATGTGTGCCTATTTATGC 57.304 39.130 0.00 0.00 0.00 3.14
3293 5409 6.262944 TCCAAGCTTATGTGTGCCTATTTATG 59.737 38.462 0.00 0.00 0.00 1.90
3294 5410 6.364701 TCCAAGCTTATGTGTGCCTATTTAT 58.635 36.000 0.00 0.00 0.00 1.40
3295 5411 5.750524 TCCAAGCTTATGTGTGCCTATTTA 58.249 37.500 0.00 0.00 0.00 1.40
3296 5412 4.599041 TCCAAGCTTATGTGTGCCTATTT 58.401 39.130 0.00 0.00 0.00 1.40
3297 5413 4.080356 TCTCCAAGCTTATGTGTGCCTATT 60.080 41.667 0.00 0.00 0.00 1.73
3298 5414 3.455910 TCTCCAAGCTTATGTGTGCCTAT 59.544 43.478 0.00 0.00 0.00 2.57
3299 5415 2.837591 TCTCCAAGCTTATGTGTGCCTA 59.162 45.455 0.00 0.00 0.00 3.93
3300 5416 1.630369 TCTCCAAGCTTATGTGTGCCT 59.370 47.619 0.00 0.00 0.00 4.75
3301 5417 2.113860 TCTCCAAGCTTATGTGTGCC 57.886 50.000 0.00 0.00 0.00 5.01
3302 5418 3.126000 GTCTTCTCCAAGCTTATGTGTGC 59.874 47.826 0.00 0.00 0.00 4.57
3303 5419 4.318332 TGTCTTCTCCAAGCTTATGTGTG 58.682 43.478 0.00 0.00 0.00 3.82
3304 5420 4.623932 TGTCTTCTCCAAGCTTATGTGT 57.376 40.909 0.00 0.00 0.00 3.72
3305 5421 4.756642 TGTTGTCTTCTCCAAGCTTATGTG 59.243 41.667 0.00 0.00 0.00 3.21
3306 5422 4.973168 TGTTGTCTTCTCCAAGCTTATGT 58.027 39.130 0.00 0.00 0.00 2.29
3307 5423 5.947228 TTGTTGTCTTCTCCAAGCTTATG 57.053 39.130 0.00 0.00 0.00 1.90
3308 5424 8.515414 GTTTATTGTTGTCTTCTCCAAGCTTAT 58.485 33.333 0.00 0.00 0.00 1.73
3309 5425 7.307751 CGTTTATTGTTGTCTTCTCCAAGCTTA 60.308 37.037 0.00 0.00 0.00 3.09
3310 5426 6.513393 CGTTTATTGTTGTCTTCTCCAAGCTT 60.513 38.462 0.00 0.00 0.00 3.74
3311 5427 5.049405 CGTTTATTGTTGTCTTCTCCAAGCT 60.049 40.000 0.00 0.00 0.00 3.74
3312 5428 5.147162 CGTTTATTGTTGTCTTCTCCAAGC 58.853 41.667 0.00 0.00 0.00 4.01
3313 5429 5.147162 GCGTTTATTGTTGTCTTCTCCAAG 58.853 41.667 0.00 0.00 0.00 3.61
3314 5430 4.576873 TGCGTTTATTGTTGTCTTCTCCAA 59.423 37.500 0.00 0.00 0.00 3.53
3315 5431 4.024387 GTGCGTTTATTGTTGTCTTCTCCA 60.024 41.667 0.00 0.00 0.00 3.86
3316 5432 4.024387 TGTGCGTTTATTGTTGTCTTCTCC 60.024 41.667 0.00 0.00 0.00 3.71
3317 5433 4.904154 GTGTGCGTTTATTGTTGTCTTCTC 59.096 41.667 0.00 0.00 0.00 2.87
3318 5434 4.334203 TGTGTGCGTTTATTGTTGTCTTCT 59.666 37.500 0.00 0.00 0.00 2.85
3319 5435 4.436523 GTGTGTGCGTTTATTGTTGTCTTC 59.563 41.667 0.00 0.00 0.00 2.87
3320 5436 4.347813 GTGTGTGCGTTTATTGTTGTCTT 58.652 39.130 0.00 0.00 0.00 3.01
3321 5437 3.545228 CGTGTGTGCGTTTATTGTTGTCT 60.545 43.478 0.00 0.00 0.00 3.41
3322 5438 2.711964 CGTGTGTGCGTTTATTGTTGTC 59.288 45.455 0.00 0.00 0.00 3.18
3323 5439 2.096174 ACGTGTGTGCGTTTATTGTTGT 59.904 40.909 0.00 0.00 43.04 3.32
3324 5440 2.462203 CACGTGTGTGCGTTTATTGTTG 59.538 45.455 7.58 0.00 43.83 3.33
3325 5441 2.710760 CACGTGTGTGCGTTTATTGTT 58.289 42.857 7.58 0.00 43.83 2.83
3326 5442 2.376915 CACGTGTGTGCGTTTATTGT 57.623 45.000 7.58 0.00 43.83 2.71
3337 5453 2.011741 TTGAGTCCTCGCACGTGTGT 62.012 55.000 26.94 8.94 0.00 3.72
3338 5454 1.278172 CTTGAGTCCTCGCACGTGTG 61.278 60.000 22.93 22.93 0.00 3.82
3339 5455 1.007271 CTTGAGTCCTCGCACGTGT 60.007 57.895 18.38 0.00 0.00 4.49
3340 5456 0.597637 AACTTGAGTCCTCGCACGTG 60.598 55.000 12.28 12.28 0.00 4.49
3341 5457 0.104304 AAACTTGAGTCCTCGCACGT 59.896 50.000 0.00 0.00 0.00 4.49
3342 5458 0.508641 CAAACTTGAGTCCTCGCACG 59.491 55.000 0.00 0.00 0.00 5.34
3343 5459 1.527311 GTCAAACTTGAGTCCTCGCAC 59.473 52.381 0.00 0.00 37.98 5.34
3344 5460 1.138069 TGTCAAACTTGAGTCCTCGCA 59.862 47.619 0.00 0.00 37.98 5.10
3345 5461 1.865865 TGTCAAACTTGAGTCCTCGC 58.134 50.000 0.00 0.00 37.98 5.03
3346 5462 3.194861 TGTTGTCAAACTTGAGTCCTCG 58.805 45.455 0.00 0.00 37.98 4.63
3347 5463 5.757850 ATTGTTGTCAAACTTGAGTCCTC 57.242 39.130 0.00 0.00 37.98 3.71
3348 5464 7.122055 TGTTTATTGTTGTCAAACTTGAGTCCT 59.878 33.333 0.00 0.00 37.98 3.85
3349 5465 7.220108 GTGTTTATTGTTGTCAAACTTGAGTCC 59.780 37.037 0.00 0.00 37.98 3.85
3350 5466 7.753132 TGTGTTTATTGTTGTCAAACTTGAGTC 59.247 33.333 0.00 0.00 37.98 3.36
3351 5467 7.598278 TGTGTTTATTGTTGTCAAACTTGAGT 58.402 30.769 0.00 0.00 37.98 3.41
3352 5468 7.754924 ACTGTGTTTATTGTTGTCAAACTTGAG 59.245 33.333 0.00 0.00 37.98 3.02
3353 5469 7.598278 ACTGTGTTTATTGTTGTCAAACTTGA 58.402 30.769 0.00 0.00 37.19 3.02
3354 5470 7.810766 ACTGTGTTTATTGTTGTCAAACTTG 57.189 32.000 0.00 0.00 37.19 3.16
3355 5471 9.349145 GTTACTGTGTTTATTGTTGTCAAACTT 57.651 29.630 0.00 0.00 37.19 2.66
3356 5472 7.694784 CGTTACTGTGTTTATTGTTGTCAAACT 59.305 33.333 0.00 0.00 37.19 2.66
3357 5473 7.482428 ACGTTACTGTGTTTATTGTTGTCAAAC 59.518 33.333 0.00 0.00 37.11 2.93
3358 5474 7.482113 CACGTTACTGTGTTTATTGTTGTCAAA 59.518 33.333 0.00 0.00 34.83 2.69
3359 5475 6.962116 CACGTTACTGTGTTTATTGTTGTCAA 59.038 34.615 0.00 0.00 35.25 3.18
3360 5476 6.457122 CCACGTTACTGTGTTTATTGTTGTCA 60.457 38.462 0.00 0.00 38.20 3.58
3361 5477 5.905181 CCACGTTACTGTGTTTATTGTTGTC 59.095 40.000 0.00 0.00 38.20 3.18
3362 5478 5.354792 ACCACGTTACTGTGTTTATTGTTGT 59.645 36.000 0.00 0.00 38.20 3.32
3363 5479 5.679355 CACCACGTTACTGTGTTTATTGTTG 59.321 40.000 0.00 0.00 38.20 3.33
3364 5480 5.585445 TCACCACGTTACTGTGTTTATTGTT 59.415 36.000 0.00 0.00 38.20 2.83
3365 5481 5.006941 GTCACCACGTTACTGTGTTTATTGT 59.993 40.000 0.00 0.00 38.20 2.71
3366 5482 5.006844 TGTCACCACGTTACTGTGTTTATTG 59.993 40.000 0.00 0.00 38.20 1.90
3367 5483 5.117584 TGTCACCACGTTACTGTGTTTATT 58.882 37.500 0.00 0.00 38.20 1.40
3368 5484 4.695396 TGTCACCACGTTACTGTGTTTAT 58.305 39.130 0.00 0.00 38.20 1.40
3369 5485 4.120792 TGTCACCACGTTACTGTGTTTA 57.879 40.909 0.00 0.00 38.20 2.01
3370 5486 2.975266 TGTCACCACGTTACTGTGTTT 58.025 42.857 0.00 0.00 38.20 2.83
3371 5487 2.676632 TGTCACCACGTTACTGTGTT 57.323 45.000 0.00 0.00 38.20 3.32
3372 5488 2.902705 ATGTCACCACGTTACTGTGT 57.097 45.000 0.00 0.00 38.20 3.72
3373 5489 5.856126 ATTTATGTCACCACGTTACTGTG 57.144 39.130 0.00 0.00 39.60 3.66
3374 5490 6.664515 CAAATTTATGTCACCACGTTACTGT 58.335 36.000 0.00 0.00 0.00 3.55
3375 5491 5.567534 GCAAATTTATGTCACCACGTTACTG 59.432 40.000 0.00 0.00 0.00 2.74
3376 5492 5.335348 GGCAAATTTATGTCACCACGTTACT 60.335 40.000 0.00 0.00 0.00 2.24
3377 5493 4.854839 GGCAAATTTATGTCACCACGTTAC 59.145 41.667 0.00 0.00 0.00 2.50
3378 5494 4.762765 AGGCAAATTTATGTCACCACGTTA 59.237 37.500 0.00 0.00 0.00 3.18
3379 5495 3.572255 AGGCAAATTTATGTCACCACGTT 59.428 39.130 0.00 0.00 0.00 3.99
3380 5496 3.057596 CAGGCAAATTTATGTCACCACGT 60.058 43.478 0.00 0.00 0.00 4.49
3381 5497 3.057596 ACAGGCAAATTTATGTCACCACG 60.058 43.478 0.00 0.00 0.00 4.94
3382 5498 4.022416 TGACAGGCAAATTTATGTCACCAC 60.022 41.667 20.57 4.88 45.18 4.16
3383 5499 4.148079 TGACAGGCAAATTTATGTCACCA 58.852 39.130 20.57 7.22 45.18 4.17
3384 5500 4.782019 TGACAGGCAAATTTATGTCACC 57.218 40.909 20.57 5.59 45.18 4.02
3387 5503 7.538575 AGTTGTATGACAGGCAAATTTATGTC 58.461 34.615 17.25 17.25 41.89 3.06
3388 5504 7.466746 AGTTGTATGACAGGCAAATTTATGT 57.533 32.000 0.00 0.00 0.00 2.29
3389 5505 7.915397 GGTAGTTGTATGACAGGCAAATTTATG 59.085 37.037 0.00 0.00 0.00 1.90
3390 5506 7.068226 GGGTAGTTGTATGACAGGCAAATTTAT 59.932 37.037 0.00 0.00 0.00 1.40
3391 5507 6.376018 GGGTAGTTGTATGACAGGCAAATTTA 59.624 38.462 0.00 0.00 0.00 1.40
3392 5508 5.185056 GGGTAGTTGTATGACAGGCAAATTT 59.815 40.000 1.18 0.00 0.00 1.82
3393 5509 4.705023 GGGTAGTTGTATGACAGGCAAATT 59.295 41.667 1.18 0.00 0.00 1.82
3394 5510 4.270008 GGGTAGTTGTATGACAGGCAAAT 58.730 43.478 0.00 1.49 0.00 2.32
3395 5511 3.681593 GGGTAGTTGTATGACAGGCAAA 58.318 45.455 0.00 0.00 0.00 3.68
3396 5512 2.354303 CGGGTAGTTGTATGACAGGCAA 60.354 50.000 0.00 0.00 0.00 4.52
3397 5513 1.206132 CGGGTAGTTGTATGACAGGCA 59.794 52.381 0.00 0.00 0.00 4.75
3398 5514 1.479323 TCGGGTAGTTGTATGACAGGC 59.521 52.381 0.00 0.00 0.00 4.85
3399 5515 3.383505 TGATCGGGTAGTTGTATGACAGG 59.616 47.826 0.00 0.00 0.00 4.00
3400 5516 4.649088 TGATCGGGTAGTTGTATGACAG 57.351 45.455 0.00 0.00 0.00 3.51
3401 5517 4.707934 TCTTGATCGGGTAGTTGTATGACA 59.292 41.667 0.00 0.00 0.00 3.58
3402 5518 5.041940 GTCTTGATCGGGTAGTTGTATGAC 58.958 45.833 0.00 0.00 0.00 3.06
3403 5519 4.098960 GGTCTTGATCGGGTAGTTGTATGA 59.901 45.833 0.00 0.00 0.00 2.15
3404 5520 4.099573 AGGTCTTGATCGGGTAGTTGTATG 59.900 45.833 0.00 0.00 0.00 2.39
3405 5521 4.099573 CAGGTCTTGATCGGGTAGTTGTAT 59.900 45.833 0.00 0.00 0.00 2.29
3406 5522 3.446161 CAGGTCTTGATCGGGTAGTTGTA 59.554 47.826 0.00 0.00 0.00 2.41
3407 5523 2.233922 CAGGTCTTGATCGGGTAGTTGT 59.766 50.000 0.00 0.00 0.00 3.32
3408 5524 2.893637 CAGGTCTTGATCGGGTAGTTG 58.106 52.381 0.00 0.00 0.00 3.16
3409 5525 1.207329 GCAGGTCTTGATCGGGTAGTT 59.793 52.381 0.00 0.00 0.00 2.24
3410 5526 0.824759 GCAGGTCTTGATCGGGTAGT 59.175 55.000 0.00 0.00 0.00 2.73
3411 5527 0.824109 TGCAGGTCTTGATCGGGTAG 59.176 55.000 0.00 0.00 0.00 3.18
3412 5528 1.412710 GATGCAGGTCTTGATCGGGTA 59.587 52.381 0.00 0.00 0.00 3.69
3413 5529 0.179000 GATGCAGGTCTTGATCGGGT 59.821 55.000 0.00 0.00 0.00 5.28
3414 5530 0.533755 GGATGCAGGTCTTGATCGGG 60.534 60.000 0.00 0.00 0.00 5.14
3415 5531 2.997899 GGATGCAGGTCTTGATCGG 58.002 57.895 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.