Multiple sequence alignment - TraesCS7A01G105600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G105600 chr7A 100.000 3242 0 0 1 3242 64211839 64208598 0.000000e+00 5987
1 TraesCS7A01G105600 chr7A 89.394 990 79 13 1669 2635 64294065 64295051 0.000000e+00 1223
2 TraesCS7A01G105600 chr7A 87.805 533 38 15 2723 3242 64308926 64309444 1.660000e-167 599
3 TraesCS7A01G105600 chr7A 92.517 294 20 2 2 295 64209903 64209612 1.390000e-113 420
4 TraesCS7A01G105600 chr7A 81.168 531 58 22 2496 3025 64255235 64254746 3.920000e-104 388
5 TraesCS7A01G105600 chr7A 76.672 673 59 42 659 1260 64256431 64257076 1.900000e-72 283
6 TraesCS7A01G105600 chr7A 90.625 128 12 0 1127 1254 64217953 64217826 1.550000e-38 171
7 TraesCS7A01G105600 chr7B 91.422 1294 74 12 1015 2293 2334229 2335500 0.000000e+00 1740
8 TraesCS7A01G105600 chr7B 86.245 1454 127 31 1274 2690 2329366 2327949 0.000000e+00 1509
9 TraesCS7A01G105600 chr7B 91.608 286 22 2 10 295 2328692 2328409 8.430000e-106 394
10 TraesCS7A01G105600 chr7B 91.608 286 22 2 10 295 2335156 2335439 8.430000e-106 394
11 TraesCS7A01G105600 chr7B 79.141 652 73 36 2496 3130 2338191 2338796 3.030000e-105 392
12 TraesCS7A01G105600 chr7B 83.475 236 20 10 2798 3032 2327721 2327504 5.480000e-48 202
13 TraesCS7A01G105600 chr4A 90.517 1297 93 8 1015 2296 677731709 677730428 0.000000e+00 1687
14 TraesCS7A01G105600 chr4A 82.003 689 79 20 2583 3242 677736818 677737490 7.910000e-151 544
15 TraesCS7A01G105600 chr4A 89.860 286 27 2 10 295 677730776 677730493 1.840000e-97 366
16 TraesCS7A01G105600 chr6B 88.222 1350 124 22 1052 2388 135996579 135995252 0.000000e+00 1580
17 TraesCS7A01G105600 chr6B 87.783 1367 119 23 1052 2405 136101314 136099983 0.000000e+00 1555
18 TraesCS7A01G105600 chr6B 91.958 286 21 2 10 295 136100418 136100135 1.810000e-107 399
19 TraesCS7A01G105600 chr6B 90.210 286 26 2 10 295 135995686 135995403 3.950000e-99 372
20 TraesCS7A01G105600 chr6D 88.131 1348 129 17 1052 2386 62325409 62324080 0.000000e+00 1574
21 TraesCS7A01G105600 chr6D 90.050 1206 95 16 1079 2269 62425195 62424000 0.000000e+00 1539
22 TraesCS7A01G105600 chr6D 91.608 286 22 2 10 295 62324513 62324230 8.430000e-106 394
23 TraesCS7A01G105600 chr6D 91.259 286 23 2 10 295 62424323 62424040 3.920000e-104 388
24 TraesCS7A01G105600 chr6A 88.200 1322 118 25 1052 2357 79815063 79813764 0.000000e+00 1543
25 TraesCS7A01G105600 chr6A 87.179 1365 134 21 1052 2404 79703776 79702441 0.000000e+00 1513
26 TraesCS7A01G105600 chr6A 90.909 286 24 2 10 295 79814164 79813881 1.820000e-102 383


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G105600 chr7A 64208598 64211839 3241 True 3203.500000 5987 96.258500 1 3242 2 chr7A.!!$R3 3241
1 TraesCS7A01G105600 chr7A 64294065 64295051 986 False 1223.000000 1223 89.394000 1669 2635 1 chr7A.!!$F2 966
2 TraesCS7A01G105600 chr7A 64308926 64309444 518 False 599.000000 599 87.805000 2723 3242 1 chr7A.!!$F3 519
3 TraesCS7A01G105600 chr7A 64256431 64257076 645 False 283.000000 283 76.672000 659 1260 1 chr7A.!!$F1 601
4 TraesCS7A01G105600 chr7B 2334229 2338796 4567 False 842.000000 1740 87.390333 10 3130 3 chr7B.!!$F1 3120
5 TraesCS7A01G105600 chr7B 2327504 2329366 1862 True 701.666667 1509 87.109333 10 3032 3 chr7B.!!$R1 3022
6 TraesCS7A01G105600 chr4A 677730428 677731709 1281 True 1026.500000 1687 90.188500 10 2296 2 chr4A.!!$R1 2286
7 TraesCS7A01G105600 chr4A 677736818 677737490 672 False 544.000000 544 82.003000 2583 3242 1 chr4A.!!$F1 659
8 TraesCS7A01G105600 chr6B 136099983 136101314 1331 True 977.000000 1555 89.870500 10 2405 2 chr6B.!!$R2 2395
9 TraesCS7A01G105600 chr6B 135995252 135996579 1327 True 976.000000 1580 89.216000 10 2388 2 chr6B.!!$R1 2378
10 TraesCS7A01G105600 chr6D 62324080 62325409 1329 True 984.000000 1574 89.869500 10 2386 2 chr6D.!!$R1 2376
11 TraesCS7A01G105600 chr6D 62424000 62425195 1195 True 963.500000 1539 90.654500 10 2269 2 chr6D.!!$R2 2259
12 TraesCS7A01G105600 chr6A 79702441 79703776 1335 True 1513.000000 1513 87.179000 1052 2404 1 chr6A.!!$R1 1352
13 TraesCS7A01G105600 chr6A 79813764 79815063 1299 True 963.000000 1543 89.554500 10 2357 2 chr6A.!!$R2 2347

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
261 262 0.036010 CAAGAAGATGGCCTCACCGT 60.036 55.0 3.32 0.0 43.94 4.83 F
482 483 0.106967 GGAAGAATGAGAGGGTGGGC 60.107 60.0 0.00 0.0 0.00 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1122 1199 0.107459 GGCTGAGGTTGTCCTGATCC 60.107 60.0 0.0 0.0 45.24 3.36 R
2243 2362 0.673644 GTCAGTGAATGGGTGGGTCG 60.674 60.0 0.0 0.0 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.836154 ATCAGGTGTGGCCGTGTT 59.164 55.556 0.00 0.00 43.70 3.32
18 19 1.302511 ATCAGGTGTGGCCGTGTTC 60.303 57.895 0.00 0.00 43.70 3.18
19 20 3.345808 CAGGTGTGGCCGTGTTCG 61.346 66.667 0.00 0.00 43.70 3.95
51 52 4.012895 GCGGCGGTGAACACAGTG 62.013 66.667 9.78 0.00 0.00 3.66
52 53 3.345808 CGGCGGTGAACACAGTGG 61.346 66.667 5.31 0.00 0.00 4.00
53 54 2.110213 GGCGGTGAACACAGTGGA 59.890 61.111 5.31 0.00 0.00 4.02
54 55 1.961277 GGCGGTGAACACAGTGGAG 60.961 63.158 5.31 0.00 0.00 3.86
55 56 2.607892 GCGGTGAACACAGTGGAGC 61.608 63.158 5.31 0.00 0.00 4.70
56 57 1.227527 CGGTGAACACAGTGGAGCA 60.228 57.895 5.31 0.00 0.00 4.26
57 58 1.498865 CGGTGAACACAGTGGAGCAC 61.499 60.000 5.31 9.46 34.10 4.40
58 59 1.498865 GGTGAACACAGTGGAGCACG 61.499 60.000 5.31 0.00 39.64 5.34
59 60 1.227527 TGAACACAGTGGAGCACGG 60.228 57.895 5.31 0.00 39.64 4.94
60 61 2.591715 AACACAGTGGAGCACGGC 60.592 61.111 5.31 0.00 39.64 5.68
61 62 4.969196 ACACAGTGGAGCACGGCG 62.969 66.667 4.80 4.80 39.64 6.46
77 78 4.889112 CGGGCAGATGGGCATGCT 62.889 66.667 18.92 0.00 45.66 3.79
78 79 3.224324 GGGCAGATGGGCATGCTG 61.224 66.667 18.92 8.66 45.66 4.41
79 80 2.441532 GGCAGATGGGCATGCTGT 60.442 61.111 18.92 3.52 42.19 4.40
80 81 2.056223 GGCAGATGGGCATGCTGTT 61.056 57.895 18.92 1.76 42.19 3.16
81 82 1.436336 GCAGATGGGCATGCTGTTC 59.564 57.895 18.92 11.46 39.38 3.18
82 83 1.725665 CAGATGGGCATGCTGTTCG 59.274 57.895 18.92 5.05 0.00 3.95
83 84 0.745486 CAGATGGGCATGCTGTTCGA 60.745 55.000 18.92 0.00 0.00 3.71
84 85 0.463295 AGATGGGCATGCTGTTCGAG 60.463 55.000 18.92 0.00 0.00 4.04
92 93 3.184683 GCTGTTCGAGCTGCTCCG 61.185 66.667 22.97 17.41 45.21 4.63
93 94 3.184683 CTGTTCGAGCTGCTCCGC 61.185 66.667 22.97 13.58 0.00 5.54
94 95 3.921767 CTGTTCGAGCTGCTCCGCA 62.922 63.158 22.97 16.97 36.92 5.69
95 96 2.738521 GTTCGAGCTGCTCCGCAA 60.739 61.111 22.97 11.04 38.41 4.85
96 97 2.738521 TTCGAGCTGCTCCGCAAC 60.739 61.111 22.97 0.00 38.41 4.17
97 98 3.226429 TTCGAGCTGCTCCGCAACT 62.226 57.895 22.97 0.00 37.70 3.16
98 99 3.485431 CGAGCTGCTCCGCAACTG 61.485 66.667 22.97 4.17 34.98 3.16
99 100 3.797546 GAGCTGCTCCGCAACTGC 61.798 66.667 18.80 0.00 34.98 4.40
110 111 2.047655 CAACTGCGCGGGGTTCTA 60.048 61.111 22.44 0.00 0.00 2.10
111 112 2.047560 AACTGCGCGGGGTTCTAC 60.048 61.111 22.44 0.00 0.00 2.59
112 113 3.600898 AACTGCGCGGGGTTCTACC 62.601 63.158 22.44 0.00 37.60 3.18
121 122 3.381370 GGGTTCTACCGCAAGATCC 57.619 57.895 0.00 4.54 39.83 3.36
122 123 0.539986 GGGTTCTACCGCAAGATCCA 59.460 55.000 12.01 0.00 39.83 3.41
123 124 1.473434 GGGTTCTACCGCAAGATCCAG 60.473 57.143 12.01 0.00 39.83 3.86
124 125 1.473434 GGTTCTACCGCAAGATCCAGG 60.473 57.143 7.23 0.00 43.02 4.45
125 126 1.480954 GTTCTACCGCAAGATCCAGGA 59.519 52.381 0.00 0.00 43.02 3.86
126 127 1.403814 TCTACCGCAAGATCCAGGAG 58.596 55.000 0.00 0.00 43.02 3.69
127 128 0.390860 CTACCGCAAGATCCAGGAGG 59.609 60.000 0.00 0.00 43.02 4.30
136 137 4.686695 TCCAGGAGGACATCGAGG 57.313 61.111 0.00 0.00 39.61 4.63
137 138 1.758514 TCCAGGAGGACATCGAGGC 60.759 63.158 0.00 0.00 39.61 4.70
151 152 3.097293 AGGCCTACCTCGGACAGA 58.903 61.111 1.29 0.00 46.34 3.41
152 153 1.621377 AGGCCTACCTCGGACAGAT 59.379 57.895 1.29 0.00 46.34 2.90
153 154 0.468400 AGGCCTACCTCGGACAGATC 60.468 60.000 1.29 0.00 46.34 2.75
154 155 1.465200 GGCCTACCTCGGACAGATCC 61.465 65.000 0.00 0.00 42.28 3.36
155 156 1.465200 GCCTACCTCGGACAGATCCC 61.465 65.000 0.00 0.00 42.83 3.85
162 163 2.494918 GGACAGATCCCGACGTGG 59.505 66.667 0.00 0.00 39.39 4.94
163 164 2.050350 GGACAGATCCCGACGTGGA 61.050 63.158 0.00 7.40 42.00 4.02
164 165 1.433879 GACAGATCCCGACGTGGAG 59.566 63.158 0.00 0.00 42.00 3.86
165 166 1.001269 ACAGATCCCGACGTGGAGA 60.001 57.895 0.00 0.00 42.00 3.71
166 167 1.032657 ACAGATCCCGACGTGGAGAG 61.033 60.000 0.00 5.88 42.00 3.20
167 168 1.454111 AGATCCCGACGTGGAGAGG 60.454 63.158 0.00 0.00 42.00 3.69
168 169 1.453379 GATCCCGACGTGGAGAGGA 60.453 63.158 0.00 0.00 42.00 3.71
169 170 1.448922 GATCCCGACGTGGAGAGGAG 61.449 65.000 0.00 0.00 42.00 3.69
170 171 2.912987 ATCCCGACGTGGAGAGGAGG 62.913 65.000 0.00 0.00 42.00 4.30
171 172 3.141488 CCGACGTGGAGAGGAGGG 61.141 72.222 0.00 0.00 42.00 4.30
172 173 2.045242 CGACGTGGAGAGGAGGGA 60.045 66.667 0.00 0.00 0.00 4.20
173 174 2.115911 CGACGTGGAGAGGAGGGAG 61.116 68.421 0.00 0.00 0.00 4.30
174 175 2.363147 ACGTGGAGAGGAGGGAGC 60.363 66.667 0.00 0.00 0.00 4.70
175 176 3.522731 CGTGGAGAGGAGGGAGCG 61.523 72.222 0.00 0.00 0.00 5.03
176 177 3.844090 GTGGAGAGGAGGGAGCGC 61.844 72.222 0.00 0.00 0.00 5.92
197 198 2.935955 GTGGTGTTCGCGACCAAG 59.064 61.111 18.56 0.00 45.17 3.61
198 199 2.280524 TGGTGTTCGCGACCAAGG 60.281 61.111 15.09 0.00 40.65 3.61
199 200 2.280592 GGTGTTCGCGACCAAGGT 60.281 61.111 9.15 0.00 33.25 3.50
200 201 2.604174 GGTGTTCGCGACCAAGGTG 61.604 63.158 9.15 0.00 33.25 4.00
201 202 2.280524 TGTTCGCGACCAAGGTGG 60.281 61.111 9.15 0.00 45.02 4.61
202 203 3.723348 GTTCGCGACCAAGGTGGC 61.723 66.667 9.15 15.24 42.67 5.01
206 207 4.025401 GCGACCAAGGTGGCGTTG 62.025 66.667 10.46 0.00 42.67 4.10
207 208 2.280524 CGACCAAGGTGGCGTTGA 60.281 61.111 0.00 0.00 42.67 3.18
208 209 1.890041 CGACCAAGGTGGCGTTGAA 60.890 57.895 0.00 0.00 42.67 2.69
209 210 1.841663 CGACCAAGGTGGCGTTGAAG 61.842 60.000 0.00 0.00 42.67 3.02
210 211 2.130073 GACCAAGGTGGCGTTGAAGC 62.130 60.000 0.00 0.00 42.67 3.86
211 212 1.898574 CCAAGGTGGCGTTGAAGCT 60.899 57.895 3.52 0.00 37.29 3.74
212 213 1.576421 CAAGGTGGCGTTGAAGCTC 59.424 57.895 0.00 0.00 37.29 4.09
213 214 1.961277 AAGGTGGCGTTGAAGCTCG 60.961 57.895 0.00 0.00 37.29 5.03
214 215 3.423154 GGTGGCGTTGAAGCTCGG 61.423 66.667 0.00 0.00 37.29 4.63
220 221 3.793144 GTTGAAGCTCGGCCGCAG 61.793 66.667 23.51 19.56 0.00 5.18
236 237 4.928398 AGCATGTCGGAGCTGAAG 57.072 55.556 0.00 0.00 40.13 3.02
237 238 1.449246 AGCATGTCGGAGCTGAAGC 60.449 57.895 0.00 0.00 40.13 3.86
238 239 1.742880 GCATGTCGGAGCTGAAGCA 60.743 57.895 4.90 0.00 45.16 3.91
239 240 1.703438 GCATGTCGGAGCTGAAGCAG 61.703 60.000 4.90 0.00 45.16 4.24
240 241 0.390866 CATGTCGGAGCTGAAGCAGT 60.391 55.000 4.90 0.00 45.16 4.40
241 242 0.322975 ATGTCGGAGCTGAAGCAGTT 59.677 50.000 4.90 0.00 45.16 3.16
242 243 0.319900 TGTCGGAGCTGAAGCAGTTC 60.320 55.000 4.90 3.10 45.16 3.01
243 244 0.319900 GTCGGAGCTGAAGCAGTTCA 60.320 55.000 12.24 0.00 42.19 3.18
244 245 0.392706 TCGGAGCTGAAGCAGTTCAA 59.607 50.000 12.24 0.00 42.19 2.69
245 246 0.795085 CGGAGCTGAAGCAGTTCAAG 59.205 55.000 12.24 3.50 42.19 3.02
246 247 1.606480 CGGAGCTGAAGCAGTTCAAGA 60.606 52.381 12.24 0.00 42.19 3.02
247 248 2.498167 GGAGCTGAAGCAGTTCAAGAA 58.502 47.619 12.24 0.00 42.19 2.52
248 249 2.483491 GGAGCTGAAGCAGTTCAAGAAG 59.517 50.000 12.24 0.00 42.19 2.85
249 250 3.397482 GAGCTGAAGCAGTTCAAGAAGA 58.603 45.455 4.90 0.00 42.27 2.87
250 251 4.002316 GAGCTGAAGCAGTTCAAGAAGAT 58.998 43.478 4.90 0.00 42.27 2.40
251 252 3.752222 AGCTGAAGCAGTTCAAGAAGATG 59.248 43.478 4.90 0.00 42.27 2.90
252 253 3.119919 GCTGAAGCAGTTCAAGAAGATGG 60.120 47.826 0.00 0.00 42.27 3.51
253 254 2.816087 TGAAGCAGTTCAAGAAGATGGC 59.184 45.455 0.00 0.00 39.85 4.40
254 255 1.831580 AGCAGTTCAAGAAGATGGCC 58.168 50.000 0.00 0.00 0.00 5.36
255 256 1.353694 AGCAGTTCAAGAAGATGGCCT 59.646 47.619 3.32 0.00 0.00 5.19
256 257 1.742268 GCAGTTCAAGAAGATGGCCTC 59.258 52.381 3.32 0.00 0.00 4.70
257 258 2.877300 GCAGTTCAAGAAGATGGCCTCA 60.877 50.000 3.32 0.00 0.00 3.86
258 259 2.746362 CAGTTCAAGAAGATGGCCTCAC 59.254 50.000 3.32 0.00 0.00 3.51
259 260 2.087646 GTTCAAGAAGATGGCCTCACC 58.912 52.381 3.32 0.00 39.84 4.02
260 261 0.250234 TCAAGAAGATGGCCTCACCG 59.750 55.000 3.32 0.00 43.94 4.94
261 262 0.036010 CAAGAAGATGGCCTCACCGT 60.036 55.000 3.32 0.00 43.94 4.83
266 267 4.082523 ATGGCCTCACCGTCCGTG 62.083 66.667 3.32 0.00 43.94 4.94
272 273 3.664495 TCACCGTCCGTGAGAGAC 58.336 61.111 0.00 0.00 46.80 3.36
284 285 3.143807 GTGAGAGACGAGGACATCAAG 57.856 52.381 0.00 0.00 0.00 3.02
285 286 2.095461 TGAGAGACGAGGACATCAAGG 58.905 52.381 0.00 0.00 0.00 3.61
286 287 2.290960 TGAGAGACGAGGACATCAAGGA 60.291 50.000 0.00 0.00 0.00 3.36
287 288 2.755655 GAGAGACGAGGACATCAAGGAA 59.244 50.000 0.00 0.00 0.00 3.36
288 289 3.370104 AGAGACGAGGACATCAAGGAAT 58.630 45.455 0.00 0.00 0.00 3.01
289 290 3.772025 AGAGACGAGGACATCAAGGAATT 59.228 43.478 0.00 0.00 0.00 2.17
290 291 4.223923 AGAGACGAGGACATCAAGGAATTT 59.776 41.667 0.00 0.00 0.00 1.82
291 292 4.256920 AGACGAGGACATCAAGGAATTTG 58.743 43.478 0.00 0.00 38.17 2.32
292 293 2.749621 ACGAGGACATCAAGGAATTTGC 59.250 45.455 0.00 0.00 36.70 3.68
293 294 2.098117 CGAGGACATCAAGGAATTTGCC 59.902 50.000 0.00 0.00 36.70 4.52
294 295 2.094675 AGGACATCAAGGAATTTGCCG 58.905 47.619 0.00 0.00 36.70 5.69
295 296 1.469767 GGACATCAAGGAATTTGCCGC 60.470 52.381 0.00 0.00 36.70 6.53
296 297 0.532115 ACATCAAGGAATTTGCCGCC 59.468 50.000 0.00 0.00 36.70 6.13
297 298 0.526096 CATCAAGGAATTTGCCGCCG 60.526 55.000 0.00 0.00 36.70 6.46
298 299 1.666209 ATCAAGGAATTTGCCGCCGG 61.666 55.000 0.00 0.00 36.70 6.13
299 300 2.282887 AAGGAATTTGCCGCCGGT 60.283 55.556 4.45 0.00 0.00 5.28
300 301 1.906333 AAGGAATTTGCCGCCGGTT 60.906 52.632 4.45 0.00 0.00 4.44
301 302 1.873270 AAGGAATTTGCCGCCGGTTC 61.873 55.000 4.45 0.00 0.00 3.62
302 303 2.180769 GAATTTGCCGCCGGTTCC 59.819 61.111 4.45 0.00 0.00 3.62
303 304 3.350909 GAATTTGCCGCCGGTTCCC 62.351 63.158 4.45 0.00 0.00 3.97
304 305 3.879180 AATTTGCCGCCGGTTCCCT 62.879 57.895 4.45 0.00 0.00 4.20
305 306 3.879180 ATTTGCCGCCGGTTCCCTT 62.879 57.895 4.45 0.00 0.00 3.95
310 311 4.029809 CGCCGGTTCCCTTCCCTT 62.030 66.667 1.90 0.00 0.00 3.95
311 312 2.439245 GCCGGTTCCCTTCCCTTT 59.561 61.111 1.90 0.00 0.00 3.11
312 313 1.228769 GCCGGTTCCCTTCCCTTTT 60.229 57.895 1.90 0.00 0.00 2.27
313 314 1.248785 GCCGGTTCCCTTCCCTTTTC 61.249 60.000 1.90 0.00 0.00 2.29
314 315 0.611062 CCGGTTCCCTTCCCTTTTCC 60.611 60.000 0.00 0.00 0.00 3.13
315 316 0.611062 CGGTTCCCTTCCCTTTTCCC 60.611 60.000 0.00 0.00 0.00 3.97
316 317 0.252103 GGTTCCCTTCCCTTTTCCCC 60.252 60.000 0.00 0.00 0.00 4.81
317 318 0.784495 GTTCCCTTCCCTTTTCCCCT 59.216 55.000 0.00 0.00 0.00 4.79
318 319 1.081481 TTCCCTTCCCTTTTCCCCTC 58.919 55.000 0.00 0.00 0.00 4.30
319 320 0.198696 TCCCTTCCCTTTTCCCCTCT 59.801 55.000 0.00 0.00 0.00 3.69
320 321 1.084866 CCCTTCCCTTTTCCCCTCTT 58.915 55.000 0.00 0.00 0.00 2.85
321 322 1.272704 CCCTTCCCTTTTCCCCTCTTG 60.273 57.143 0.00 0.00 0.00 3.02
322 323 1.272704 CCTTCCCTTTTCCCCTCTTGG 60.273 57.143 0.00 0.00 0.00 3.61
323 324 0.114364 TTCCCTTTTCCCCTCTTGGC 59.886 55.000 0.00 0.00 0.00 4.52
324 325 1.305297 CCCTTTTCCCCTCTTGGCC 60.305 63.158 0.00 0.00 0.00 5.36
325 326 1.776969 CCTTTTCCCCTCTTGGCCT 59.223 57.895 3.32 0.00 0.00 5.19
326 327 0.323816 CCTTTTCCCCTCTTGGCCTC 60.324 60.000 3.32 0.00 0.00 4.70
327 328 0.678048 CTTTTCCCCTCTTGGCCTCG 60.678 60.000 3.32 0.00 0.00 4.63
328 329 1.131303 TTTTCCCCTCTTGGCCTCGA 61.131 55.000 3.32 0.00 0.00 4.04
329 330 1.838073 TTTCCCCTCTTGGCCTCGAC 61.838 60.000 3.32 0.00 0.00 4.20
330 331 4.148825 CCCCTCTTGGCCTCGACG 62.149 72.222 3.32 0.00 0.00 5.12
331 332 3.382832 CCCTCTTGGCCTCGACGT 61.383 66.667 3.32 0.00 0.00 4.34
332 333 2.182030 CCTCTTGGCCTCGACGTC 59.818 66.667 5.18 5.18 0.00 4.34
333 334 2.202492 CTCTTGGCCTCGACGTCG 60.202 66.667 31.30 31.30 41.45 5.12
334 335 4.415332 TCTTGGCCTCGACGTCGC 62.415 66.667 32.19 18.54 39.60 5.19
340 341 4.778415 CCTCGACGTCGCCACCTG 62.778 72.222 32.19 16.15 39.60 4.00
350 351 3.605664 GCCACCTGCCCACACAAC 61.606 66.667 0.00 0.00 0.00 3.32
351 352 2.912025 CCACCTGCCCACACAACC 60.912 66.667 0.00 0.00 0.00 3.77
352 353 2.123939 CACCTGCCCACACAACCA 60.124 61.111 0.00 0.00 0.00 3.67
353 354 1.531365 CACCTGCCCACACAACCAT 60.531 57.895 0.00 0.00 0.00 3.55
354 355 1.531365 ACCTGCCCACACAACCATG 60.531 57.895 0.00 0.00 0.00 3.66
355 356 2.277591 CCTGCCCACACAACCATGG 61.278 63.158 11.19 11.19 35.59 3.66
356 357 2.916703 TGCCCACACAACCATGGC 60.917 61.111 13.04 0.00 42.49 4.40
357 358 3.694538 GCCCACACAACCATGGCC 61.695 66.667 13.04 0.00 36.07 5.36
358 359 3.372730 CCCACACAACCATGGCCG 61.373 66.667 13.04 5.43 34.37 6.13
359 360 2.282110 CCACACAACCATGGCCGA 60.282 61.111 13.04 0.00 0.00 5.54
360 361 2.625823 CCACACAACCATGGCCGAC 61.626 63.158 13.04 0.00 0.00 4.79
361 362 1.896183 CACACAACCATGGCCGACA 60.896 57.895 13.04 0.00 0.00 4.35
362 363 1.600636 ACACAACCATGGCCGACAG 60.601 57.895 13.04 0.00 0.00 3.51
363 364 1.302431 CACAACCATGGCCGACAGA 60.302 57.895 13.04 0.00 0.00 3.41
364 365 1.302511 ACAACCATGGCCGACAGAC 60.303 57.895 13.04 0.00 0.00 3.51
365 366 2.047274 AACCATGGCCGACAGACG 60.047 61.111 13.04 0.00 42.18 4.18
366 367 4.760047 ACCATGGCCGACAGACGC 62.760 66.667 13.04 0.00 41.07 5.19
368 369 4.758251 CATGGCCGACAGACGCCA 62.758 66.667 2.81 2.81 45.89 5.69
369 370 4.760047 ATGGCCGACAGACGCCAC 62.760 66.667 2.31 0.00 45.18 5.01
373 374 4.293648 CCGACAGACGCCACACCA 62.294 66.667 0.00 0.00 41.07 4.17
374 375 2.048222 CGACAGACGCCACACCAT 60.048 61.111 0.00 0.00 34.51 3.55
375 376 2.382746 CGACAGACGCCACACCATG 61.383 63.158 0.00 0.00 34.51 3.66
402 403 3.998156 CGAGACCTGTCGGGAAGA 58.002 61.111 4.16 0.00 38.76 2.87
415 416 2.055299 GGAAGACCCTTCCACGACA 58.945 57.895 18.09 0.00 38.45 4.35
416 417 0.613777 GGAAGACCCTTCCACGACAT 59.386 55.000 18.09 0.00 38.45 3.06
417 418 1.405661 GGAAGACCCTTCCACGACATC 60.406 57.143 18.09 0.00 38.45 3.06
418 419 1.550976 GAAGACCCTTCCACGACATCT 59.449 52.381 0.00 0.00 0.00 2.90
419 420 1.187087 AGACCCTTCCACGACATCTC 58.813 55.000 0.00 0.00 0.00 2.75
420 421 0.175989 GACCCTTCCACGACATCTCC 59.824 60.000 0.00 0.00 0.00 3.71
421 422 0.252284 ACCCTTCCACGACATCTCCT 60.252 55.000 0.00 0.00 0.00 3.69
422 423 0.176680 CCCTTCCACGACATCTCCTG 59.823 60.000 0.00 0.00 0.00 3.86
423 424 0.460987 CCTTCCACGACATCTCCTGC 60.461 60.000 0.00 0.00 0.00 4.85
424 425 0.460987 CTTCCACGACATCTCCTGCC 60.461 60.000 0.00 0.00 0.00 4.85
425 426 1.899437 TTCCACGACATCTCCTGCCC 61.899 60.000 0.00 0.00 0.00 5.36
426 427 2.187946 CACGACATCTCCTGCCCC 59.812 66.667 0.00 0.00 0.00 5.80
427 428 3.461773 ACGACATCTCCTGCCCCG 61.462 66.667 0.00 0.00 0.00 5.73
428 429 3.461773 CGACATCTCCTGCCCCGT 61.462 66.667 0.00 0.00 0.00 5.28
429 430 2.501610 GACATCTCCTGCCCCGTC 59.498 66.667 0.00 0.00 0.00 4.79
430 431 3.432051 GACATCTCCTGCCCCGTCG 62.432 68.421 0.00 0.00 0.00 5.12
431 432 3.461773 CATCTCCTGCCCCGTCGT 61.462 66.667 0.00 0.00 0.00 4.34
432 433 3.148279 ATCTCCTGCCCCGTCGTC 61.148 66.667 0.00 0.00 0.00 4.20
433 434 3.957435 ATCTCCTGCCCCGTCGTCA 62.957 63.158 0.00 0.00 0.00 4.35
434 435 4.436998 CTCCTGCCCCGTCGTCAC 62.437 72.222 0.00 0.00 0.00 3.67
435 436 4.988716 TCCTGCCCCGTCGTCACT 62.989 66.667 0.00 0.00 0.00 3.41
436 437 3.066190 CCTGCCCCGTCGTCACTA 61.066 66.667 0.00 0.00 0.00 2.74
437 438 2.181021 CTGCCCCGTCGTCACTAC 59.819 66.667 0.00 0.00 0.00 2.73
438 439 3.352338 CTGCCCCGTCGTCACTACC 62.352 68.421 0.00 0.00 0.00 3.18
439 440 3.376078 GCCCCGTCGTCACTACCA 61.376 66.667 0.00 0.00 0.00 3.25
440 441 2.882876 CCCCGTCGTCACTACCAG 59.117 66.667 0.00 0.00 0.00 4.00
441 442 2.181021 CCCGTCGTCACTACCAGC 59.819 66.667 0.00 0.00 0.00 4.85
442 443 2.632544 CCCGTCGTCACTACCAGCA 61.633 63.158 0.00 0.00 0.00 4.41
443 444 1.154016 CCGTCGTCACTACCAGCAG 60.154 63.158 0.00 0.00 0.00 4.24
444 445 1.583495 CCGTCGTCACTACCAGCAGA 61.583 60.000 0.00 0.00 0.00 4.26
445 446 0.452184 CGTCGTCACTACCAGCAGAT 59.548 55.000 0.00 0.00 0.00 2.90
446 447 1.795525 CGTCGTCACTACCAGCAGATG 60.796 57.143 0.00 0.00 0.00 2.90
470 471 4.176752 GCGAGGCCGGGGAAGAAT 62.177 66.667 2.18 0.00 36.06 2.40
471 472 2.203070 CGAGGCCGGGGAAGAATG 60.203 66.667 2.18 0.00 0.00 2.67
472 473 2.731571 CGAGGCCGGGGAAGAATGA 61.732 63.158 2.18 0.00 0.00 2.57
473 474 1.147153 GAGGCCGGGGAAGAATGAG 59.853 63.158 2.18 0.00 0.00 2.90
474 475 1.306997 AGGCCGGGGAAGAATGAGA 60.307 57.895 2.18 0.00 0.00 3.27
475 476 1.147153 GGCCGGGGAAGAATGAGAG 59.853 63.158 2.18 0.00 0.00 3.20
476 477 1.147153 GCCGGGGAAGAATGAGAGG 59.853 63.158 2.18 0.00 0.00 3.69
477 478 1.832912 CCGGGGAAGAATGAGAGGG 59.167 63.158 0.00 0.00 0.00 4.30
478 479 0.983378 CCGGGGAAGAATGAGAGGGT 60.983 60.000 0.00 0.00 0.00 4.34
479 480 0.179000 CGGGGAAGAATGAGAGGGTG 59.821 60.000 0.00 0.00 0.00 4.61
480 481 0.548510 GGGGAAGAATGAGAGGGTGG 59.451 60.000 0.00 0.00 0.00 4.61
481 482 0.548510 GGGAAGAATGAGAGGGTGGG 59.451 60.000 0.00 0.00 0.00 4.61
482 483 0.106967 GGAAGAATGAGAGGGTGGGC 60.107 60.000 0.00 0.00 0.00 5.36
483 484 0.106967 GAAGAATGAGAGGGTGGGCC 60.107 60.000 0.00 0.00 0.00 5.80
499 500 4.133373 CCCATGGGGCAGGAGGTG 62.133 72.222 24.53 0.00 35.35 4.00
500 501 4.133373 CCATGGGGCAGGAGGTGG 62.133 72.222 2.85 0.00 0.00 4.61
501 502 4.133373 CATGGGGCAGGAGGTGGG 62.133 72.222 0.00 0.00 0.00 4.61
502 503 4.701437 ATGGGGCAGGAGGTGGGT 62.701 66.667 0.00 0.00 0.00 4.51
506 507 4.729918 GGCAGGAGGTGGGTGCAG 62.730 72.222 0.00 0.00 39.05 4.41
508 509 3.644606 CAGGAGGTGGGTGCAGCT 61.645 66.667 16.65 0.00 35.39 4.24
509 510 3.644606 AGGAGGTGGGTGCAGCTG 61.645 66.667 16.65 10.11 32.51 4.24
510 511 3.958860 GGAGGTGGGTGCAGCTGT 61.959 66.667 16.64 0.00 32.51 4.40
511 512 2.359230 GAGGTGGGTGCAGCTGTC 60.359 66.667 16.64 8.39 32.51 3.51
512 513 3.170672 AGGTGGGTGCAGCTGTCA 61.171 61.111 16.64 11.11 0.00 3.58
513 514 2.034687 GGTGGGTGCAGCTGTCAT 59.965 61.111 16.64 0.00 0.00 3.06
514 515 2.042831 GGTGGGTGCAGCTGTCATC 61.043 63.158 16.64 13.65 0.00 2.92
515 516 1.302752 GTGGGTGCAGCTGTCATCA 60.303 57.895 16.64 12.69 0.00 3.07
516 517 1.002990 TGGGTGCAGCTGTCATCAG 60.003 57.895 16.64 0.00 43.87 2.90
517 518 1.297689 GGGTGCAGCTGTCATCAGA 59.702 57.895 16.64 0.00 43.76 3.27
518 519 0.743701 GGGTGCAGCTGTCATCAGAG 60.744 60.000 16.64 0.00 43.76 3.35
519 520 1.367599 GGTGCAGCTGTCATCAGAGC 61.368 60.000 16.64 0.00 43.76 4.09
520 521 0.672711 GTGCAGCTGTCATCAGAGCA 60.673 55.000 16.64 0.00 45.02 4.26
521 522 0.252197 TGCAGCTGTCATCAGAGCAT 59.748 50.000 16.64 0.00 43.63 3.79
522 523 1.483415 TGCAGCTGTCATCAGAGCATA 59.517 47.619 16.64 0.00 43.63 3.14
523 524 2.104281 TGCAGCTGTCATCAGAGCATAT 59.896 45.455 16.64 0.00 43.63 1.78
524 525 2.480802 GCAGCTGTCATCAGAGCATATG 59.519 50.000 16.64 0.00 43.76 1.78
525 526 3.067833 CAGCTGTCATCAGAGCATATGG 58.932 50.000 5.25 0.00 43.76 2.74
526 527 1.805345 GCTGTCATCAGAGCATATGGC 59.195 52.381 4.56 0.00 43.76 4.40
527 528 2.809299 GCTGTCATCAGAGCATATGGCA 60.809 50.000 4.56 0.00 43.76 4.92
528 529 3.473625 CTGTCATCAGAGCATATGGCAA 58.526 45.455 4.56 0.00 43.76 4.52
529 530 4.072839 CTGTCATCAGAGCATATGGCAAT 58.927 43.478 4.56 0.00 43.76 3.56
530 531 5.243207 CTGTCATCAGAGCATATGGCAATA 58.757 41.667 4.56 0.00 43.76 1.90
531 532 5.880887 CTGTCATCAGAGCATATGGCAATAT 59.119 40.000 4.56 0.00 43.76 1.28
532 533 6.183360 CTGTCATCAGAGCATATGGCAATATG 60.183 42.308 15.76 15.76 43.92 1.78
533 534 9.013937 CTGTCATCAGAGCATATGGCAATATGG 62.014 44.444 20.44 6.08 42.87 2.74
537 538 1.856629 GCATATGGCAATATGGGGCT 58.143 50.000 20.44 0.00 44.04 5.19
538 539 2.181975 GCATATGGCAATATGGGGCTT 58.818 47.619 20.44 0.34 44.04 4.35
539 540 2.093869 GCATATGGCAATATGGGGCTTG 60.094 50.000 20.44 0.00 44.04 4.01
540 541 3.167485 CATATGGCAATATGGGGCTTGT 58.833 45.455 12.69 0.00 41.34 3.16
541 542 1.416243 ATGGCAATATGGGGCTTGTG 58.584 50.000 0.00 0.00 0.00 3.33
542 543 0.334335 TGGCAATATGGGGCTTGTGA 59.666 50.000 0.00 0.00 0.00 3.58
543 544 0.746659 GGCAATATGGGGCTTGTGAC 59.253 55.000 0.00 0.00 0.00 3.67
544 545 0.746659 GCAATATGGGGCTTGTGACC 59.253 55.000 0.00 0.00 41.93 4.02
545 546 1.959508 GCAATATGGGGCTTGTGACCA 60.960 52.381 0.00 0.00 45.45 4.02
546 547 1.750778 CAATATGGGGCTTGTGACCAC 59.249 52.381 0.00 0.00 45.45 4.16
547 548 0.258774 ATATGGGGCTTGTGACCACC 59.741 55.000 0.00 0.00 45.45 4.61
548 549 0.844661 TATGGGGCTTGTGACCACCT 60.845 55.000 0.00 0.00 45.45 4.00
549 550 1.729267 ATGGGGCTTGTGACCACCTT 61.729 55.000 0.00 0.00 45.45 3.50
550 551 1.903404 GGGGCTTGTGACCACCTTG 60.903 63.158 0.00 0.00 45.45 3.61
551 552 1.903404 GGGCTTGTGACCACCTTGG 60.903 63.158 0.00 0.00 42.34 3.61
552 553 2.564721 GGCTTGTGACCACCTTGGC 61.565 63.158 0.00 0.00 42.67 4.52
553 554 2.564721 GCTTGTGACCACCTTGGCC 61.565 63.158 0.00 0.00 42.67 5.36
554 555 2.203280 TTGTGACCACCTTGGCCG 60.203 61.111 0.00 0.00 42.67 6.13
555 556 3.783362 TTGTGACCACCTTGGCCGG 62.783 63.158 0.00 0.00 42.67 6.13
556 557 3.948719 GTGACCACCTTGGCCGGA 61.949 66.667 5.05 0.00 42.67 5.14
557 558 3.636231 TGACCACCTTGGCCGGAG 61.636 66.667 5.05 1.06 42.67 4.63
558 559 3.637273 GACCACCTTGGCCGGAGT 61.637 66.667 5.05 0.57 42.67 3.85
559 560 3.901797 GACCACCTTGGCCGGAGTG 62.902 68.421 5.05 10.95 42.67 3.51
560 561 4.722700 CCACCTTGGCCGGAGTGG 62.723 72.222 19.81 19.81 43.50 4.00
583 584 3.787001 GAGGGGGAGCGGGTTCAG 61.787 72.222 0.00 0.00 0.00 3.02
586 587 3.327404 GGGGAGCGGGTTCAGGAA 61.327 66.667 0.00 0.00 0.00 3.36
587 588 2.269241 GGGAGCGGGTTCAGGAAG 59.731 66.667 0.00 0.00 0.00 3.46
588 589 2.436824 GGAGCGGGTTCAGGAAGC 60.437 66.667 2.72 2.72 38.03 3.86
589 590 2.665603 GAGCGGGTTCAGGAAGCT 59.334 61.111 10.63 2.97 41.29 3.74
590 591 1.448717 GAGCGGGTTCAGGAAGCTC 60.449 63.158 10.63 8.22 45.74 4.09
591 592 2.217038 AGCGGGTTCAGGAAGCTCA 61.217 57.895 10.63 0.00 38.72 4.26
592 593 1.302511 GCGGGTTCAGGAAGCTCAA 60.303 57.895 10.63 0.00 38.72 3.02
593 594 1.578206 GCGGGTTCAGGAAGCTCAAC 61.578 60.000 10.63 0.00 38.72 3.18
594 595 0.250295 CGGGTTCAGGAAGCTCAACA 60.250 55.000 10.63 0.00 38.72 3.33
595 596 1.239347 GGGTTCAGGAAGCTCAACAC 58.761 55.000 10.63 0.00 38.72 3.32
596 597 1.239347 GGTTCAGGAAGCTCAACACC 58.761 55.000 4.09 0.00 36.02 4.16
597 598 1.239347 GTTCAGGAAGCTCAACACCC 58.761 55.000 0.00 0.00 0.00 4.61
598 599 1.140312 TTCAGGAAGCTCAACACCCT 58.860 50.000 0.00 0.00 0.00 4.34
599 600 0.687354 TCAGGAAGCTCAACACCCTC 59.313 55.000 0.00 0.00 0.00 4.30
600 601 0.689623 CAGGAAGCTCAACACCCTCT 59.310 55.000 0.00 0.00 0.00 3.69
601 602 1.072965 CAGGAAGCTCAACACCCTCTT 59.927 52.381 0.00 0.00 0.00 2.85
602 603 1.349357 AGGAAGCTCAACACCCTCTTC 59.651 52.381 0.00 0.00 34.12 2.87
603 604 1.433534 GAAGCTCAACACCCTCTTCG 58.566 55.000 0.00 0.00 0.00 3.79
604 605 1.000955 GAAGCTCAACACCCTCTTCGA 59.999 52.381 0.00 0.00 0.00 3.71
605 606 1.048601 AGCTCAACACCCTCTTCGAA 58.951 50.000 0.00 0.00 0.00 3.71
606 607 1.625818 AGCTCAACACCCTCTTCGAAT 59.374 47.619 0.00 0.00 0.00 3.34
607 608 2.832129 AGCTCAACACCCTCTTCGAATA 59.168 45.455 0.00 0.00 0.00 1.75
608 609 3.118956 AGCTCAACACCCTCTTCGAATAG 60.119 47.826 0.00 0.00 0.00 1.73
609 610 3.368531 GCTCAACACCCTCTTCGAATAGT 60.369 47.826 9.42 0.00 0.00 2.12
610 611 4.425520 CTCAACACCCTCTTCGAATAGTC 58.574 47.826 9.42 0.00 0.00 2.59
611 612 3.830178 TCAACACCCTCTTCGAATAGTCA 59.170 43.478 9.42 0.00 0.00 3.41
612 613 4.282449 TCAACACCCTCTTCGAATAGTCAA 59.718 41.667 9.42 0.00 0.00 3.18
613 614 4.884668 ACACCCTCTTCGAATAGTCAAA 57.115 40.909 9.42 0.00 0.00 2.69
614 615 4.566987 ACACCCTCTTCGAATAGTCAAAC 58.433 43.478 9.42 0.00 0.00 2.93
615 616 3.933332 CACCCTCTTCGAATAGTCAAACC 59.067 47.826 9.42 0.00 0.00 3.27
616 617 3.055312 ACCCTCTTCGAATAGTCAAACCC 60.055 47.826 9.42 0.00 0.00 4.11
617 618 3.532542 CCTCTTCGAATAGTCAAACCCC 58.467 50.000 9.42 0.00 0.00 4.95
618 619 3.532542 CTCTTCGAATAGTCAAACCCCC 58.467 50.000 0.00 0.00 0.00 5.40
640 641 8.109705 CCCCCTTCTAAAATTTTGGAAAAATG 57.890 34.615 24.36 15.38 37.23 2.32
641 642 7.941790 CCCCCTTCTAAAATTTTGGAAAAATGA 59.058 33.333 24.36 7.35 37.23 2.57
642 643 9.348476 CCCCTTCTAAAATTTTGGAAAAATGAA 57.652 29.630 24.36 6.75 37.23 2.57
650 651 8.625786 AAATTTTGGAAAAATGAATCTCCCTG 57.374 30.769 0.00 0.00 0.00 4.45
651 652 5.743636 TTTGGAAAAATGAATCTCCCTGG 57.256 39.130 0.00 0.00 0.00 4.45
652 653 4.673328 TGGAAAAATGAATCTCCCTGGA 57.327 40.909 0.00 0.00 0.00 3.86
653 654 4.344104 TGGAAAAATGAATCTCCCTGGAC 58.656 43.478 0.00 0.00 0.00 4.02
654 655 4.044571 TGGAAAAATGAATCTCCCTGGACT 59.955 41.667 0.00 0.00 0.00 3.85
655 656 5.019470 GGAAAAATGAATCTCCCTGGACTT 58.981 41.667 0.00 0.00 0.00 3.01
656 657 6.187682 GGAAAAATGAATCTCCCTGGACTTA 58.812 40.000 0.00 0.00 0.00 2.24
657 658 6.836007 GGAAAAATGAATCTCCCTGGACTTAT 59.164 38.462 0.00 0.00 0.00 1.73
658 659 7.998964 GGAAAAATGAATCTCCCTGGACTTATA 59.001 37.037 0.00 0.00 0.00 0.98
659 660 9.408648 GAAAAATGAATCTCCCTGGACTTATAA 57.591 33.333 0.00 0.00 0.00 0.98
660 661 9.942526 AAAAATGAATCTCCCTGGACTTATAAT 57.057 29.630 0.00 0.00 0.00 1.28
707 708 3.603532 TGTCAATCTGCCATCTCTTGAC 58.396 45.455 6.75 6.75 43.67 3.18
714 715 0.807496 GCCATCTCTTGACCAGTTGC 59.193 55.000 0.00 0.00 0.00 4.17
715 716 1.457346 CCATCTCTTGACCAGTTGCC 58.543 55.000 0.00 0.00 0.00 4.52
716 717 1.271543 CCATCTCTTGACCAGTTGCCA 60.272 52.381 0.00 0.00 0.00 4.92
717 718 2.619849 CCATCTCTTGACCAGTTGCCAT 60.620 50.000 0.00 0.00 0.00 4.40
718 719 3.370846 CCATCTCTTGACCAGTTGCCATA 60.371 47.826 0.00 0.00 0.00 2.74
719 720 4.264253 CATCTCTTGACCAGTTGCCATAA 58.736 43.478 0.00 0.00 0.00 1.90
734 735 2.418976 GCCATAAACAGAAACGGTCTCC 59.581 50.000 0.00 0.00 32.70 3.71
745 746 3.434454 GGTCTCCCGTCCGATCTC 58.566 66.667 0.00 0.00 0.00 2.75
777 778 1.330521 ACATCAACACGCACACACTTC 59.669 47.619 0.00 0.00 0.00 3.01
791 799 5.410067 CACACACTTCAAACCACAATTCTT 58.590 37.500 0.00 0.00 0.00 2.52
797 805 3.791245 TCAAACCACAATTCTTGGCAAC 58.209 40.909 0.00 0.00 37.69 4.17
814 822 0.768622 AACGGAATTGACCCAGACCA 59.231 50.000 0.00 0.00 0.00 4.02
819 834 0.251787 AATTGACCCAGACCAAGCCC 60.252 55.000 0.00 0.00 0.00 5.19
821 836 1.650242 TTGACCCAGACCAAGCCCAA 61.650 55.000 0.00 0.00 0.00 4.12
823 838 2.283173 CCCAGACCAAGCCCAACC 60.283 66.667 0.00 0.00 0.00 3.77
834 849 3.002583 CCCAACCCAACCCATGCC 61.003 66.667 0.00 0.00 0.00 4.40
835 850 3.381136 CCAACCCAACCCATGCCG 61.381 66.667 0.00 0.00 0.00 5.69
845 860 4.095590 CCATGCCGGGTCAAACTT 57.904 55.556 2.18 0.00 0.00 2.66
846 861 3.257935 CCATGCCGGGTCAAACTTA 57.742 52.632 2.18 0.00 0.00 2.24
847 862 1.762708 CCATGCCGGGTCAAACTTAT 58.237 50.000 2.18 0.00 0.00 1.73
848 863 2.925724 CCATGCCGGGTCAAACTTATA 58.074 47.619 2.18 0.00 0.00 0.98
849 864 3.283751 CCATGCCGGGTCAAACTTATAA 58.716 45.455 2.18 0.00 0.00 0.98
850 865 3.066203 CCATGCCGGGTCAAACTTATAAC 59.934 47.826 2.18 0.00 0.00 1.89
851 866 3.420300 TGCCGGGTCAAACTTATAACA 57.580 42.857 2.18 0.00 0.00 2.41
852 867 3.958018 TGCCGGGTCAAACTTATAACAT 58.042 40.909 2.18 0.00 0.00 2.71
853 868 3.942748 TGCCGGGTCAAACTTATAACATC 59.057 43.478 2.18 0.00 0.00 3.06
854 869 3.314357 GCCGGGTCAAACTTATAACATCC 59.686 47.826 2.18 0.00 0.00 3.51
855 870 4.519213 CCGGGTCAAACTTATAACATCCA 58.481 43.478 0.00 0.00 0.00 3.41
856 871 5.130350 CCGGGTCAAACTTATAACATCCAT 58.870 41.667 0.00 0.00 0.00 3.41
870 885 1.143813 ATCCATCATCACCCACTCCC 58.856 55.000 0.00 0.00 0.00 4.30
872 887 1.281199 CCATCATCACCCACTCCCCA 61.281 60.000 0.00 0.00 0.00 4.96
911 947 4.412060 AAATACTTCCATCCCCAACCAA 57.588 40.909 0.00 0.00 0.00 3.67
915 951 1.895131 CTTCCATCCCCAACCAACTTG 59.105 52.381 0.00 0.00 0.00 3.16
933 969 0.320683 TGGTCAGCTCATCAACACGG 60.321 55.000 0.00 0.00 0.00 4.94
950 987 1.291272 GGCAGGGAAGCAGCAAAAG 59.709 57.895 0.00 0.00 35.83 2.27
969 1006 3.077339 CTTGGAAGCAAACGAAGCG 57.923 52.632 0.00 0.00 37.01 4.68
970 1007 0.586319 CTTGGAAGCAAACGAAGCGA 59.414 50.000 0.00 0.00 37.01 4.93
971 1008 0.306533 TTGGAAGCAAACGAAGCGAC 59.693 50.000 0.00 0.00 37.01 5.19
974 1011 1.385999 GAAGCAAACGAAGCGACAAC 58.614 50.000 0.00 0.00 37.01 3.32
975 1012 0.730265 AAGCAAACGAAGCGACAACA 59.270 45.000 0.00 0.00 37.01 3.33
976 1013 0.304705 AGCAAACGAAGCGACAACAG 59.695 50.000 0.00 0.00 37.01 3.16
979 1016 2.101209 AAACGAAGCGACAACAGCGG 62.101 55.000 0.00 0.00 40.04 5.52
980 1017 2.733218 CGAAGCGACAACAGCGGA 60.733 61.111 0.00 0.00 40.04 5.54
981 1018 2.853914 GAAGCGACAACAGCGGAC 59.146 61.111 0.00 0.00 40.04 4.79
985 1022 3.414700 CGACAACAGCGGACCAGC 61.415 66.667 0.00 0.00 37.41 4.85
986 1023 2.280797 GACAACAGCGGACCAGCA 60.281 61.111 10.28 0.00 40.15 4.41
988 1025 3.357079 CAACAGCGGACCAGCACC 61.357 66.667 10.28 0.00 40.15 5.01
989 1026 4.643387 AACAGCGGACCAGCACCC 62.643 66.667 10.28 0.00 40.15 4.61
993 1030 4.966787 GCGGACCAGCACCCCAAA 62.967 66.667 3.82 0.00 37.05 3.28
1038 1103 0.120172 AGCCTTCCTCTTCCCCTTCT 59.880 55.000 0.00 0.00 0.00 2.85
1041 1106 1.757699 CCTTCCTCTTCCCCTTCTACG 59.242 57.143 0.00 0.00 0.00 3.51
1046 1111 2.389715 CTCTTCCCCTTCTACGTCCAT 58.610 52.381 0.00 0.00 0.00 3.41
1299 1397 0.896940 ATTGGAACCACCTGCTGCTG 60.897 55.000 0.00 0.00 39.86 4.41
1826 1945 0.322008 GAGTTCCTGAAGGTGGGCAG 60.322 60.000 0.00 0.00 36.34 4.85
1917 2036 2.577059 GTGTTCATCGGCTCCGGA 59.423 61.111 2.93 2.93 40.25 5.14
2166 2285 2.579201 CGGAGCATGTCGGACCTT 59.421 61.111 5.55 0.00 0.00 3.50
2243 2362 1.657822 GCCGGGAAACTCTTCTGATC 58.342 55.000 2.18 0.00 0.00 2.92
2244 2363 1.927895 CCGGGAAACTCTTCTGATCG 58.072 55.000 0.00 0.00 0.00 3.69
2245 2364 1.476891 CCGGGAAACTCTTCTGATCGA 59.523 52.381 0.00 0.00 0.00 3.59
2246 2365 2.531206 CGGGAAACTCTTCTGATCGAC 58.469 52.381 0.00 0.00 0.00 4.20
2254 4849 0.833287 CTTCTGATCGACCCACCCAT 59.167 55.000 0.00 0.00 0.00 4.00
2260 4857 0.253044 ATCGACCCACCCATTCACTG 59.747 55.000 0.00 0.00 0.00 3.66
2285 4889 5.822519 ACTCACTCACTCTAGAATAGCTGAG 59.177 44.000 0.00 11.94 43.37 3.35
2300 4905 8.092068 AGAATAGCTGAGAGATGAATTCATGAG 58.908 37.037 25.37 12.91 36.57 2.90
2318 4923 9.722184 ATTCATGAGATGTGTATAGGAATTCTG 57.278 33.333 5.23 0.00 0.00 3.02
2413 5018 2.133281 TCAATCCCAATCTGCACAGG 57.867 50.000 0.00 0.00 0.00 4.00
2414 5019 1.634973 TCAATCCCAATCTGCACAGGA 59.365 47.619 0.00 0.00 0.00 3.86
2482 5118 0.730265 TGGTCAACACGCACAAGAAC 59.270 50.000 0.00 0.00 0.00 3.01
2483 5119 0.730265 GGTCAACACGCACAAGAACA 59.270 50.000 0.00 0.00 0.00 3.18
2484 5120 1.333619 GGTCAACACGCACAAGAACAT 59.666 47.619 0.00 0.00 0.00 2.71
2485 5121 2.375110 GTCAACACGCACAAGAACATG 58.625 47.619 0.00 0.00 0.00 3.21
2605 5278 1.377725 GCCACCCACCATCTCACAG 60.378 63.158 0.00 0.00 0.00 3.66
2610 5283 0.179000 CCCACCATCTCACAGTAGCC 59.821 60.000 0.00 0.00 0.00 3.93
2652 5334 5.534207 TTAAGTACTCCAACTCGTTTCCA 57.466 39.130 0.00 0.00 0.00 3.53
2716 5402 1.802960 GCCGTGCATCATTATCTCTGG 59.197 52.381 0.00 0.00 0.00 3.86
2719 5405 4.321718 CCGTGCATCATTATCTCTGGAAT 58.678 43.478 0.00 0.00 0.00 3.01
2721 5407 5.240183 CCGTGCATCATTATCTCTGGAATTT 59.760 40.000 0.00 0.00 0.00 1.82
2818 5652 5.237815 TCTGATCACGACACTAGCAAATTT 58.762 37.500 0.00 0.00 0.00 1.82
2821 5655 5.238432 TGATCACGACACTAGCAAATTTTGT 59.762 36.000 10.65 0.00 0.00 2.83
2853 5689 7.470702 GCTCACTGGACTAATTCTCTGCTATAA 60.471 40.741 0.00 0.00 0.00 0.98
2854 5690 8.484214 TCACTGGACTAATTCTCTGCTATAAT 57.516 34.615 0.00 0.00 0.00 1.28
2855 5691 8.928448 TCACTGGACTAATTCTCTGCTATAATT 58.072 33.333 0.00 0.00 0.00 1.40
2940 5776 3.074412 ACAGCCAAGAAATGTTCTACGG 58.926 45.455 0.00 0.00 39.61 4.02
2941 5777 3.244422 ACAGCCAAGAAATGTTCTACGGA 60.244 43.478 9.48 0.00 39.61 4.69
2942 5778 3.125316 CAGCCAAGAAATGTTCTACGGAC 59.875 47.826 9.48 3.30 39.61 4.79
2943 5779 3.008049 AGCCAAGAAATGTTCTACGGACT 59.992 43.478 9.48 4.92 39.61 3.85
2944 5780 4.222145 AGCCAAGAAATGTTCTACGGACTA 59.778 41.667 9.48 0.00 39.61 2.59
2945 5781 4.329256 GCCAAGAAATGTTCTACGGACTAC 59.671 45.833 9.48 0.00 39.61 2.73
2946 5782 4.561606 CCAAGAAATGTTCTACGGACTACG 59.438 45.833 0.00 0.00 43.90 3.51
3019 5870 5.515106 TCTCCCAGAAAACAAAAGAAAGGA 58.485 37.500 0.00 0.00 0.00 3.36
3063 5915 2.650322 TCAACCTGTTGGACTTGGAAC 58.350 47.619 9.94 0.00 40.78 3.62
3076 5928 2.693591 ACTTGGAACTGTTCAGAGTCGA 59.306 45.455 21.01 3.66 0.00 4.20
3079 5931 1.001597 GGAACTGTTCAGAGTCGACGT 60.002 52.381 21.01 0.00 0.00 4.34
3083 5935 0.514255 TGTTCAGAGTCGACGTACGG 59.486 55.000 21.06 2.32 42.82 4.02
3102 5959 1.926511 GCACGGCAGGGTCAATTCAG 61.927 60.000 0.00 0.00 0.00 3.02
3104 5961 2.409870 CGGCAGGGTCAATTCAGGC 61.410 63.158 0.00 0.00 0.00 4.85
3120 5977 2.693074 TCAGGCCCAAGAAGTTTTCAAC 59.307 45.455 0.00 0.00 0.00 3.18
3149 6015 0.592637 TGCAAGTTGACGGCTGAATG 59.407 50.000 7.16 0.00 0.00 2.67
3151 6017 1.804151 GCAAGTTGACGGCTGAATGTA 59.196 47.619 7.16 0.00 0.00 2.29
3189 6055 1.511613 TCCAGCCTCCAGGAAATAGG 58.488 55.000 0.00 0.00 37.39 2.57
3193 6059 3.117360 CCAGCCTCCAGGAAATAGGAAAT 60.117 47.826 0.00 0.00 37.39 2.17
3237 6103 0.319083 ACACAATAACGTCGGCTGGA 59.681 50.000 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.110213 GAACACGGCCACACCTGA 59.890 61.111 2.24 0.00 35.61 3.86
34 35 4.012895 CACTGTGTTCACCGCCGC 62.013 66.667 0.00 0.00 0.00 6.53
35 36 3.345808 CCACTGTGTTCACCGCCG 61.346 66.667 7.08 0.00 0.00 6.46
36 37 1.961277 CTCCACTGTGTTCACCGCC 60.961 63.158 7.08 0.00 0.00 6.13
37 38 2.607892 GCTCCACTGTGTTCACCGC 61.608 63.158 7.08 0.00 0.00 5.68
38 39 1.227527 TGCTCCACTGTGTTCACCG 60.228 57.895 7.08 0.00 0.00 4.94
39 40 1.498865 CGTGCTCCACTGTGTTCACC 61.499 60.000 7.08 0.00 31.34 4.02
40 41 1.498865 CCGTGCTCCACTGTGTTCAC 61.499 60.000 7.08 9.93 31.34 3.18
41 42 1.227527 CCGTGCTCCACTGTGTTCA 60.228 57.895 7.08 0.00 31.34 3.18
42 43 2.607892 GCCGTGCTCCACTGTGTTC 61.608 63.158 7.08 0.00 31.34 3.18
43 44 2.591715 GCCGTGCTCCACTGTGTT 60.592 61.111 7.08 0.00 31.34 3.32
44 45 4.969196 CGCCGTGCTCCACTGTGT 62.969 66.667 7.08 0.00 31.34 3.72
60 61 4.889112 AGCATGCCCATCTGCCCG 62.889 66.667 15.66 0.00 39.22 6.13
61 62 3.224324 CAGCATGCCCATCTGCCC 61.224 66.667 15.66 0.00 39.22 5.36
62 63 2.012902 GAACAGCATGCCCATCTGCC 62.013 60.000 15.66 0.00 42.53 4.85
63 64 1.436336 GAACAGCATGCCCATCTGC 59.564 57.895 15.66 0.00 42.53 4.26
64 65 0.745486 TCGAACAGCATGCCCATCTG 60.745 55.000 15.66 8.30 42.53 2.90
65 66 0.463295 CTCGAACAGCATGCCCATCT 60.463 55.000 15.66 0.00 42.53 2.90
66 67 2.020131 CTCGAACAGCATGCCCATC 58.980 57.895 15.66 9.06 42.53 3.51
67 68 4.230603 CTCGAACAGCATGCCCAT 57.769 55.556 15.66 0.00 42.53 4.00
93 94 2.047655 TAGAACCCCGCGCAGTTG 60.048 61.111 15.48 0.00 0.00 3.16
94 95 2.047560 GTAGAACCCCGCGCAGTT 60.048 61.111 8.75 11.20 0.00 3.16
95 96 4.078516 GGTAGAACCCCGCGCAGT 62.079 66.667 8.75 0.00 30.04 4.40
102 103 0.179054 GGATCTTGCGGTAGAACCCC 60.179 60.000 0.00 0.00 33.75 4.95
103 104 0.539986 TGGATCTTGCGGTAGAACCC 59.460 55.000 7.00 3.85 36.54 4.11
104 105 1.473434 CCTGGATCTTGCGGTAGAACC 60.473 57.143 0.00 3.56 37.55 3.62
105 106 1.480954 TCCTGGATCTTGCGGTAGAAC 59.519 52.381 0.00 0.00 0.00 3.01
106 107 1.757118 CTCCTGGATCTTGCGGTAGAA 59.243 52.381 0.00 0.00 0.00 2.10
107 108 1.403814 CTCCTGGATCTTGCGGTAGA 58.596 55.000 0.00 0.00 0.00 2.59
108 109 0.390860 CCTCCTGGATCTTGCGGTAG 59.609 60.000 0.00 0.00 34.57 3.18
109 110 0.032515 TCCTCCTGGATCTTGCGGTA 60.033 55.000 0.00 0.00 37.46 4.02
110 111 1.306141 TCCTCCTGGATCTTGCGGT 60.306 57.895 0.00 0.00 37.46 5.68
111 112 1.144936 GTCCTCCTGGATCTTGCGG 59.855 63.158 0.00 0.00 45.29 5.69
112 113 0.467384 ATGTCCTCCTGGATCTTGCG 59.533 55.000 0.00 0.00 45.29 4.85
113 114 1.539929 CGATGTCCTCCTGGATCTTGC 60.540 57.143 0.00 0.00 45.29 4.01
114 115 2.034878 TCGATGTCCTCCTGGATCTTG 58.965 52.381 0.00 0.00 45.29 3.02
115 116 2.315176 CTCGATGTCCTCCTGGATCTT 58.685 52.381 0.00 0.00 45.29 2.40
116 117 1.480312 CCTCGATGTCCTCCTGGATCT 60.480 57.143 0.00 0.00 45.29 2.75
117 118 0.965439 CCTCGATGTCCTCCTGGATC 59.035 60.000 0.00 0.00 45.29 3.36
118 119 1.118356 GCCTCGATGTCCTCCTGGAT 61.118 60.000 0.00 0.00 45.29 3.41
119 120 1.758514 GCCTCGATGTCCTCCTGGA 60.759 63.158 0.00 0.00 40.69 3.86
120 121 2.801631 GGCCTCGATGTCCTCCTGG 61.802 68.421 0.00 0.00 0.00 4.45
121 122 0.468214 TAGGCCTCGATGTCCTCCTG 60.468 60.000 9.68 0.00 0.00 3.86
122 123 0.468400 GTAGGCCTCGATGTCCTCCT 60.468 60.000 9.68 0.00 0.00 3.69
123 124 1.465200 GGTAGGCCTCGATGTCCTCC 61.465 65.000 9.68 0.00 0.00 4.30
124 125 0.468400 AGGTAGGCCTCGATGTCCTC 60.468 60.000 9.68 0.00 42.67 3.71
125 126 1.621377 AGGTAGGCCTCGATGTCCT 59.379 57.895 9.68 6.12 42.67 3.85
126 127 4.279326 AGGTAGGCCTCGATGTCC 57.721 61.111 9.68 3.62 42.67 4.02
134 135 3.834876 GGATCTGTCCGAGGTAGGCCT 62.835 61.905 11.78 11.78 40.66 5.19
135 136 1.465200 GGATCTGTCCGAGGTAGGCC 61.465 65.000 0.00 0.00 34.13 5.19
136 137 1.465200 GGGATCTGTCCGAGGTAGGC 61.465 65.000 0.00 0.00 46.09 3.93
137 138 2.734893 GGGATCTGTCCGAGGTAGG 58.265 63.158 0.00 0.00 46.09 3.18
144 145 2.102357 CACGTCGGGATCTGTCCG 59.898 66.667 2.76 2.76 46.09 4.79
145 146 2.005960 CTCCACGTCGGGATCTGTCC 62.006 65.000 0.00 0.00 44.29 4.02
146 147 1.030488 TCTCCACGTCGGGATCTGTC 61.030 60.000 0.00 0.00 36.09 3.51
147 148 1.001269 TCTCCACGTCGGGATCTGT 60.001 57.895 0.00 0.00 36.09 3.41
148 149 1.729470 CCTCTCCACGTCGGGATCTG 61.729 65.000 0.00 0.00 36.09 2.90
149 150 1.454111 CCTCTCCACGTCGGGATCT 60.454 63.158 0.00 0.00 36.09 2.75
150 151 1.448922 CTCCTCTCCACGTCGGGATC 61.449 65.000 0.00 0.00 36.09 3.36
151 152 1.454111 CTCCTCTCCACGTCGGGAT 60.454 63.158 0.00 0.00 36.09 3.85
152 153 2.045242 CTCCTCTCCACGTCGGGA 60.045 66.667 0.00 0.00 34.36 5.14
153 154 3.141488 CCTCCTCTCCACGTCGGG 61.141 72.222 0.00 0.00 34.36 5.14
154 155 3.141488 CCCTCCTCTCCACGTCGG 61.141 72.222 0.00 0.00 0.00 4.79
155 156 2.045242 TCCCTCCTCTCCACGTCG 60.045 66.667 0.00 0.00 0.00 5.12
156 157 2.419739 GCTCCCTCCTCTCCACGTC 61.420 68.421 0.00 0.00 0.00 4.34
157 158 2.363147 GCTCCCTCCTCTCCACGT 60.363 66.667 0.00 0.00 0.00 4.49
158 159 3.522731 CGCTCCCTCCTCTCCACG 61.523 72.222 0.00 0.00 0.00 4.94
159 160 3.844090 GCGCTCCCTCCTCTCCAC 61.844 72.222 0.00 0.00 0.00 4.02
179 180 2.938823 CTTGGTCGCGAACACCACG 61.939 63.158 29.42 16.75 43.93 4.94
180 181 2.604174 CCTTGGTCGCGAACACCAC 61.604 63.158 29.42 5.41 43.93 4.16
181 182 2.280524 CCTTGGTCGCGAACACCA 60.281 61.111 29.42 20.72 42.48 4.17
182 183 2.280592 ACCTTGGTCGCGAACACC 60.281 61.111 29.42 17.98 0.00 4.16
183 184 2.604174 CCACCTTGGTCGCGAACAC 61.604 63.158 29.42 13.22 31.35 3.32
184 185 2.280524 CCACCTTGGTCGCGAACA 60.281 61.111 25.58 25.58 31.35 3.18
185 186 3.723348 GCCACCTTGGTCGCGAAC 61.723 66.667 19.40 19.40 40.46 3.95
189 190 4.025401 CAACGCCACCTTGGTCGC 62.025 66.667 0.00 0.00 40.46 5.19
190 191 1.841663 CTTCAACGCCACCTTGGTCG 61.842 60.000 7.27 7.27 40.46 4.79
191 192 1.949257 CTTCAACGCCACCTTGGTC 59.051 57.895 0.00 0.00 40.46 4.02
192 193 2.193536 GCTTCAACGCCACCTTGGT 61.194 57.895 0.00 0.00 40.46 3.67
193 194 1.856265 GAGCTTCAACGCCACCTTGG 61.856 60.000 0.00 0.00 41.55 3.61
194 195 1.576421 GAGCTTCAACGCCACCTTG 59.424 57.895 0.00 0.00 0.00 3.61
195 196 1.961277 CGAGCTTCAACGCCACCTT 60.961 57.895 0.00 0.00 0.00 3.50
196 197 2.357517 CGAGCTTCAACGCCACCT 60.358 61.111 0.00 0.00 0.00 4.00
197 198 3.423154 CCGAGCTTCAACGCCACC 61.423 66.667 0.00 0.00 0.00 4.61
198 199 4.090057 GCCGAGCTTCAACGCCAC 62.090 66.667 0.00 0.00 0.00 5.01
203 204 3.793144 CTGCGGCCGAGCTTCAAC 61.793 66.667 33.48 9.04 38.13 3.18
219 220 1.449246 GCTTCAGCTCCGACATGCT 60.449 57.895 0.00 0.00 40.54 3.79
220 221 1.703438 CTGCTTCAGCTCCGACATGC 61.703 60.000 0.00 0.00 42.66 4.06
221 222 0.390866 ACTGCTTCAGCTCCGACATG 60.391 55.000 0.00 0.00 42.66 3.21
222 223 0.322975 AACTGCTTCAGCTCCGACAT 59.677 50.000 0.00 0.00 42.66 3.06
223 224 0.319900 GAACTGCTTCAGCTCCGACA 60.320 55.000 0.00 0.00 42.66 4.35
224 225 0.319900 TGAACTGCTTCAGCTCCGAC 60.320 55.000 0.00 0.00 42.66 4.79
225 226 0.392706 TTGAACTGCTTCAGCTCCGA 59.607 50.000 0.00 0.00 42.66 4.55
226 227 0.795085 CTTGAACTGCTTCAGCTCCG 59.205 55.000 0.00 0.00 42.66 4.63
227 228 2.175878 TCTTGAACTGCTTCAGCTCC 57.824 50.000 0.00 0.00 42.66 4.70
228 229 3.397482 TCTTCTTGAACTGCTTCAGCTC 58.603 45.455 0.00 0.00 42.66 4.09
229 230 3.482156 TCTTCTTGAACTGCTTCAGCT 57.518 42.857 0.00 0.00 42.66 4.24
230 231 3.119919 CCATCTTCTTGAACTGCTTCAGC 60.120 47.826 0.00 0.00 37.70 4.26
231 232 3.119919 GCCATCTTCTTGAACTGCTTCAG 60.120 47.826 0.00 0.00 37.70 3.02
232 233 2.816087 GCCATCTTCTTGAACTGCTTCA 59.184 45.455 0.00 0.00 34.39 3.02
233 234 2.163211 GGCCATCTTCTTGAACTGCTTC 59.837 50.000 0.00 0.00 0.00 3.86
234 235 2.165998 GGCCATCTTCTTGAACTGCTT 58.834 47.619 0.00 0.00 0.00 3.91
235 236 1.353694 AGGCCATCTTCTTGAACTGCT 59.646 47.619 5.01 0.00 0.00 4.24
236 237 1.742268 GAGGCCATCTTCTTGAACTGC 59.258 52.381 5.01 0.00 0.00 4.40
237 238 2.746362 GTGAGGCCATCTTCTTGAACTG 59.254 50.000 5.01 0.00 0.00 3.16
238 239 2.290577 GGTGAGGCCATCTTCTTGAACT 60.291 50.000 5.01 0.00 37.17 3.01
239 240 2.087646 GGTGAGGCCATCTTCTTGAAC 58.912 52.381 5.01 0.00 37.17 3.18
240 241 1.339055 CGGTGAGGCCATCTTCTTGAA 60.339 52.381 5.01 0.00 36.97 2.69
241 242 0.250234 CGGTGAGGCCATCTTCTTGA 59.750 55.000 5.01 0.00 36.97 3.02
242 243 0.036010 ACGGTGAGGCCATCTTCTTG 60.036 55.000 5.01 0.00 36.97 3.02
243 244 0.250513 GACGGTGAGGCCATCTTCTT 59.749 55.000 5.01 0.00 36.97 2.52
244 245 1.901085 GACGGTGAGGCCATCTTCT 59.099 57.895 5.01 0.00 36.97 2.85
245 246 4.522971 GACGGTGAGGCCATCTTC 57.477 61.111 5.01 0.00 36.97 2.87
264 265 2.159310 CCTTGATGTCCTCGTCTCTCAC 60.159 54.545 0.00 0.00 0.00 3.51
265 266 2.095461 CCTTGATGTCCTCGTCTCTCA 58.905 52.381 0.00 0.00 0.00 3.27
266 267 2.370349 TCCTTGATGTCCTCGTCTCTC 58.630 52.381 0.00 0.00 0.00 3.20
267 268 2.516227 TCCTTGATGTCCTCGTCTCT 57.484 50.000 0.00 0.00 0.00 3.10
268 269 3.810310 ATTCCTTGATGTCCTCGTCTC 57.190 47.619 0.00 0.00 0.00 3.36
269 270 4.256920 CAAATTCCTTGATGTCCTCGTCT 58.743 43.478 0.00 0.00 37.17 4.18
270 271 3.181506 GCAAATTCCTTGATGTCCTCGTC 60.182 47.826 0.00 0.00 37.17 4.20
271 272 2.749621 GCAAATTCCTTGATGTCCTCGT 59.250 45.455 0.00 0.00 37.17 4.18
272 273 2.098117 GGCAAATTCCTTGATGTCCTCG 59.902 50.000 0.00 0.00 37.17 4.63
273 274 2.098117 CGGCAAATTCCTTGATGTCCTC 59.902 50.000 0.00 0.00 37.17 3.71
274 275 2.094675 CGGCAAATTCCTTGATGTCCT 58.905 47.619 0.00 0.00 37.17 3.85
275 276 1.469767 GCGGCAAATTCCTTGATGTCC 60.470 52.381 0.00 0.00 37.17 4.02
276 277 1.469767 GGCGGCAAATTCCTTGATGTC 60.470 52.381 3.07 0.00 37.17 3.06
277 278 0.532115 GGCGGCAAATTCCTTGATGT 59.468 50.000 3.07 0.00 37.17 3.06
278 279 0.526096 CGGCGGCAAATTCCTTGATG 60.526 55.000 10.53 0.00 37.17 3.07
279 280 1.666209 CCGGCGGCAAATTCCTTGAT 61.666 55.000 15.42 0.00 37.17 2.57
280 281 2.339556 CCGGCGGCAAATTCCTTGA 61.340 57.895 15.42 0.00 37.17 3.02
281 282 2.153547 AACCGGCGGCAAATTCCTTG 62.154 55.000 28.71 0.00 38.15 3.61
282 283 1.873270 GAACCGGCGGCAAATTCCTT 61.873 55.000 28.71 10.22 0.00 3.36
283 284 2.282887 AACCGGCGGCAAATTCCT 60.283 55.556 28.71 0.00 0.00 3.36
284 285 2.180769 GAACCGGCGGCAAATTCC 59.819 61.111 28.71 3.35 0.00 3.01
285 286 2.180769 GGAACCGGCGGCAAATTC 59.819 61.111 28.71 21.35 0.00 2.17
286 287 3.378602 GGGAACCGGCGGCAAATT 61.379 61.111 28.71 13.27 40.86 1.82
298 299 0.784495 AGGGGAAAAGGGAAGGGAAC 59.216 55.000 0.00 0.00 0.00 3.62
299 300 1.081481 GAGGGGAAAAGGGAAGGGAA 58.919 55.000 0.00 0.00 0.00 3.97
300 301 0.198696 AGAGGGGAAAAGGGAAGGGA 59.801 55.000 0.00 0.00 0.00 4.20
301 302 1.084866 AAGAGGGGAAAAGGGAAGGG 58.915 55.000 0.00 0.00 0.00 3.95
302 303 1.272704 CCAAGAGGGGAAAAGGGAAGG 60.273 57.143 0.00 0.00 0.00 3.46
303 304 1.892769 GCCAAGAGGGGAAAAGGGAAG 60.893 57.143 0.00 0.00 37.04 3.46
304 305 0.114364 GCCAAGAGGGGAAAAGGGAA 59.886 55.000 0.00 0.00 37.04 3.97
305 306 1.774300 GCCAAGAGGGGAAAAGGGA 59.226 57.895 0.00 0.00 37.04 4.20
306 307 1.305297 GGCCAAGAGGGGAAAAGGG 60.305 63.158 0.00 0.00 37.04 3.95
307 308 0.323816 GAGGCCAAGAGGGGAAAAGG 60.324 60.000 5.01 0.00 37.04 3.11
308 309 0.678048 CGAGGCCAAGAGGGGAAAAG 60.678 60.000 5.01 0.00 37.04 2.27
309 310 1.131303 TCGAGGCCAAGAGGGGAAAA 61.131 55.000 5.01 0.00 37.04 2.29
310 311 1.537889 TCGAGGCCAAGAGGGGAAA 60.538 57.895 5.01 0.00 37.04 3.13
311 312 2.121832 TCGAGGCCAAGAGGGGAA 59.878 61.111 5.01 0.00 37.04 3.97
312 313 2.683933 GTCGAGGCCAAGAGGGGA 60.684 66.667 5.01 0.00 37.04 4.81
313 314 4.148825 CGTCGAGGCCAAGAGGGG 62.149 72.222 5.01 0.00 37.04 4.79
314 315 3.358076 GACGTCGAGGCCAAGAGGG 62.358 68.421 19.53 9.81 40.85 4.30
315 316 2.182030 GACGTCGAGGCCAAGAGG 59.818 66.667 5.01 12.02 38.23 3.69
316 317 2.202492 CGACGTCGAGGCCAAGAG 60.202 66.667 33.35 0.00 43.02 2.85
317 318 4.415332 GCGACGTCGAGGCCAAGA 62.415 66.667 39.74 0.00 43.02 3.02
323 324 4.778415 CAGGTGGCGACGTCGAGG 62.778 72.222 39.74 17.51 43.02 4.63
333 334 3.605664 GTTGTGTGGGCAGGTGGC 61.606 66.667 0.00 0.00 43.74 5.01
334 335 2.912025 GGTTGTGTGGGCAGGTGG 60.912 66.667 0.00 0.00 0.00 4.61
335 336 1.531365 ATGGTTGTGTGGGCAGGTG 60.531 57.895 0.00 0.00 0.00 4.00
336 337 1.531365 CATGGTTGTGTGGGCAGGT 60.531 57.895 0.00 0.00 0.00 4.00
337 338 2.277591 CCATGGTTGTGTGGGCAGG 61.278 63.158 2.57 0.00 0.00 4.85
338 339 2.934570 GCCATGGTTGTGTGGGCAG 61.935 63.158 14.67 0.00 44.01 4.85
339 340 2.916703 GCCATGGTTGTGTGGGCA 60.917 61.111 14.67 0.00 44.01 5.36
341 342 3.372730 CGGCCATGGTTGTGTGGG 61.373 66.667 14.67 0.00 36.00 4.61
342 343 2.282110 TCGGCCATGGTTGTGTGG 60.282 61.111 14.67 0.00 38.55 4.17
343 344 1.855213 CTGTCGGCCATGGTTGTGTG 61.855 60.000 14.67 0.00 0.00 3.82
344 345 1.600636 CTGTCGGCCATGGTTGTGT 60.601 57.895 14.67 0.00 0.00 3.72
345 346 1.302431 TCTGTCGGCCATGGTTGTG 60.302 57.895 14.67 0.83 0.00 3.33
346 347 1.302511 GTCTGTCGGCCATGGTTGT 60.303 57.895 14.67 0.00 0.00 3.32
347 348 2.390599 CGTCTGTCGGCCATGGTTG 61.391 63.158 14.67 6.30 35.71 3.77
348 349 2.047274 CGTCTGTCGGCCATGGTT 60.047 61.111 14.67 0.00 35.71 3.67
349 350 4.760047 GCGTCTGTCGGCCATGGT 62.760 66.667 14.67 0.00 40.26 3.55
356 357 3.589654 ATGGTGTGGCGTCTGTCGG 62.590 63.158 0.00 0.00 40.26 4.79
357 358 2.048222 ATGGTGTGGCGTCTGTCG 60.048 61.111 0.00 0.00 43.12 4.35
358 359 2.034879 CCATGGTGTGGCGTCTGTC 61.035 63.158 2.57 0.00 42.12 3.51
359 360 2.032528 CCATGGTGTGGCGTCTGT 59.967 61.111 2.57 0.00 42.12 3.41
385 386 1.507174 GTCTTCCCGACAGGTCTCG 59.493 63.158 0.00 0.00 42.37 4.04
386 387 1.605971 GGGTCTTCCCGACAGGTCTC 61.606 65.000 0.00 0.00 44.74 3.36
387 388 1.609794 GGGTCTTCCCGACAGGTCT 60.610 63.158 0.00 0.00 44.74 3.85
388 389 2.979649 GGGTCTTCCCGACAGGTC 59.020 66.667 0.00 0.00 44.74 3.85
397 398 0.613777 ATGTCGTGGAAGGGTCTTCC 59.386 55.000 17.23 17.23 39.03 3.46
398 399 1.550976 AGATGTCGTGGAAGGGTCTTC 59.449 52.381 0.00 0.00 0.00 2.87
399 400 1.550976 GAGATGTCGTGGAAGGGTCTT 59.449 52.381 0.00 0.00 0.00 3.01
400 401 1.187087 GAGATGTCGTGGAAGGGTCT 58.813 55.000 0.00 0.00 0.00 3.85
401 402 0.175989 GGAGATGTCGTGGAAGGGTC 59.824 60.000 0.00 0.00 0.00 4.46
402 403 0.252284 AGGAGATGTCGTGGAAGGGT 60.252 55.000 0.00 0.00 0.00 4.34
403 404 0.176680 CAGGAGATGTCGTGGAAGGG 59.823 60.000 4.70 0.00 35.33 3.95
404 405 0.460987 GCAGGAGATGTCGTGGAAGG 60.461 60.000 13.67 0.00 38.73 3.46
405 406 0.460987 GGCAGGAGATGTCGTGGAAG 60.461 60.000 13.67 0.00 38.73 3.46
406 407 1.596934 GGCAGGAGATGTCGTGGAA 59.403 57.895 13.67 0.00 38.73 3.53
407 408 2.359169 GGGCAGGAGATGTCGTGGA 61.359 63.158 13.67 0.00 38.73 4.02
408 409 2.187946 GGGCAGGAGATGTCGTGG 59.812 66.667 13.67 0.00 38.73 4.94
409 410 2.187946 GGGGCAGGAGATGTCGTG 59.812 66.667 8.12 8.12 40.84 4.35
410 411 3.461773 CGGGGCAGGAGATGTCGT 61.462 66.667 0.00 0.00 32.79 4.34
411 412 3.432051 GACGGGGCAGGAGATGTCG 62.432 68.421 0.00 0.00 32.79 4.35
412 413 2.501610 GACGGGGCAGGAGATGTC 59.498 66.667 0.00 0.00 0.00 3.06
413 414 3.461773 CGACGGGGCAGGAGATGT 61.462 66.667 0.00 0.00 0.00 3.06
414 415 3.432051 GACGACGGGGCAGGAGATG 62.432 68.421 0.00 0.00 0.00 2.90
415 416 3.148279 GACGACGGGGCAGGAGAT 61.148 66.667 0.00 0.00 0.00 2.75
416 417 4.671590 TGACGACGGGGCAGGAGA 62.672 66.667 0.00 0.00 0.00 3.71
417 418 4.436998 GTGACGACGGGGCAGGAG 62.437 72.222 0.00 0.00 0.00 3.69
418 419 3.572447 TAGTGACGACGGGGCAGGA 62.572 63.158 0.00 0.00 0.00 3.86
419 420 3.066190 TAGTGACGACGGGGCAGG 61.066 66.667 0.00 0.00 0.00 4.85
420 421 2.181021 GTAGTGACGACGGGGCAG 59.819 66.667 0.00 0.00 0.00 4.85
421 422 3.376078 GGTAGTGACGACGGGGCA 61.376 66.667 0.00 0.00 0.00 5.36
422 423 3.352338 CTGGTAGTGACGACGGGGC 62.352 68.421 0.00 0.00 0.00 5.80
423 424 2.882876 CTGGTAGTGACGACGGGG 59.117 66.667 0.00 0.00 0.00 5.73
424 425 2.181021 GCTGGTAGTGACGACGGG 59.819 66.667 0.00 0.00 0.00 5.28
425 426 1.154016 CTGCTGGTAGTGACGACGG 60.154 63.158 0.00 0.00 0.00 4.79
426 427 0.452184 ATCTGCTGGTAGTGACGACG 59.548 55.000 0.00 0.00 0.00 5.12
427 428 1.469940 CCATCTGCTGGTAGTGACGAC 60.470 57.143 0.00 0.00 40.49 4.34
428 429 0.817654 CCATCTGCTGGTAGTGACGA 59.182 55.000 0.00 0.00 40.49 4.20
429 430 3.352447 CCATCTGCTGGTAGTGACG 57.648 57.895 0.00 0.00 40.49 4.35
453 454 4.176752 ATTCTTCCCCGGCCTCGC 62.177 66.667 0.00 0.00 34.56 5.03
454 455 2.203070 CATTCTTCCCCGGCCTCG 60.203 66.667 0.00 0.00 0.00 4.63
455 456 1.147153 CTCATTCTTCCCCGGCCTC 59.853 63.158 0.00 0.00 0.00 4.70
456 457 1.306997 TCTCATTCTTCCCCGGCCT 60.307 57.895 0.00 0.00 0.00 5.19
457 458 1.147153 CTCTCATTCTTCCCCGGCC 59.853 63.158 0.00 0.00 0.00 6.13
458 459 1.147153 CCTCTCATTCTTCCCCGGC 59.853 63.158 0.00 0.00 0.00 6.13
459 460 0.983378 ACCCTCTCATTCTTCCCCGG 60.983 60.000 0.00 0.00 0.00 5.73
460 461 0.179000 CACCCTCTCATTCTTCCCCG 59.821 60.000 0.00 0.00 0.00 5.73
461 462 0.548510 CCACCCTCTCATTCTTCCCC 59.451 60.000 0.00 0.00 0.00 4.81
462 463 0.548510 CCCACCCTCTCATTCTTCCC 59.451 60.000 0.00 0.00 0.00 3.97
463 464 0.106967 GCCCACCCTCTCATTCTTCC 60.107 60.000 0.00 0.00 0.00 3.46
464 465 0.106967 GGCCCACCCTCTCATTCTTC 60.107 60.000 0.00 0.00 0.00 2.87
465 466 2.002625 GGCCCACCCTCTCATTCTT 58.997 57.895 0.00 0.00 0.00 2.52
466 467 3.746957 GGCCCACCCTCTCATTCT 58.253 61.111 0.00 0.00 0.00 2.40
483 484 4.133373 CCACCTCCTGCCCCATGG 62.133 72.222 4.14 4.14 0.00 3.66
484 485 4.133373 CCCACCTCCTGCCCCATG 62.133 72.222 0.00 0.00 0.00 3.66
485 486 4.701437 ACCCACCTCCTGCCCCAT 62.701 66.667 0.00 0.00 0.00 4.00
489 490 4.729918 CTGCACCCACCTCCTGCC 62.730 72.222 0.00 0.00 0.00 4.85
491 492 3.644606 AGCTGCACCCACCTCCTG 61.645 66.667 1.02 0.00 0.00 3.86
492 493 3.644606 CAGCTGCACCCACCTCCT 61.645 66.667 0.00 0.00 0.00 3.69
493 494 3.909086 GACAGCTGCACCCACCTCC 62.909 68.421 15.27 0.00 0.00 4.30
494 495 2.359230 GACAGCTGCACCCACCTC 60.359 66.667 15.27 0.00 0.00 3.85
495 496 2.475371 GATGACAGCTGCACCCACCT 62.475 60.000 15.27 0.00 0.00 4.00
496 497 2.034687 ATGACAGCTGCACCCACC 59.965 61.111 15.27 0.00 0.00 4.61
497 498 1.302752 TGATGACAGCTGCACCCAC 60.303 57.895 15.27 1.45 0.00 4.61
498 499 1.002990 CTGATGACAGCTGCACCCA 60.003 57.895 15.27 12.74 37.33 4.51
499 500 0.743701 CTCTGATGACAGCTGCACCC 60.744 60.000 15.27 9.08 43.17 4.61
500 501 1.367599 GCTCTGATGACAGCTGCACC 61.368 60.000 15.27 4.46 43.17 5.01
501 502 0.672711 TGCTCTGATGACAGCTGCAC 60.673 55.000 15.27 9.16 42.80 4.57
502 503 0.252197 ATGCTCTGATGACAGCTGCA 59.748 50.000 15.27 13.46 46.98 4.41
503 504 2.235845 TATGCTCTGATGACAGCTGC 57.764 50.000 15.27 7.45 43.17 5.25
504 505 3.067833 CCATATGCTCTGATGACAGCTG 58.932 50.000 13.48 13.48 43.17 4.24
505 506 2.550423 GCCATATGCTCTGATGACAGCT 60.550 50.000 0.00 0.00 43.17 4.24
506 507 1.805345 GCCATATGCTCTGATGACAGC 59.195 52.381 0.00 0.00 43.17 4.40
507 508 3.121738 TGCCATATGCTCTGATGACAG 57.878 47.619 0.00 0.00 42.00 3.51
508 509 3.564053 TTGCCATATGCTCTGATGACA 57.436 42.857 0.00 0.00 42.00 3.58
509 510 5.066117 CCATATTGCCATATGCTCTGATGAC 59.934 44.000 11.44 0.00 40.76 3.06
510 511 5.190677 CCATATTGCCATATGCTCTGATGA 58.809 41.667 11.44 0.00 40.76 2.92
511 512 4.338400 CCCATATTGCCATATGCTCTGATG 59.662 45.833 11.44 0.00 40.76 3.07
512 513 4.533815 CCCATATTGCCATATGCTCTGAT 58.466 43.478 11.44 0.00 40.76 2.90
513 514 3.308617 CCCCATATTGCCATATGCTCTGA 60.309 47.826 11.44 0.00 40.76 3.27
514 515 3.021695 CCCCATATTGCCATATGCTCTG 58.978 50.000 11.44 0.00 40.76 3.35
515 516 2.622452 GCCCCATATTGCCATATGCTCT 60.622 50.000 11.44 0.00 40.76 4.09
516 517 1.753073 GCCCCATATTGCCATATGCTC 59.247 52.381 11.44 0.92 40.76 4.26
517 518 1.360162 AGCCCCATATTGCCATATGCT 59.640 47.619 11.44 4.25 40.76 3.79
518 519 1.856629 AGCCCCATATTGCCATATGC 58.143 50.000 11.44 2.18 40.76 3.14
519 520 3.056393 CACAAGCCCCATATTGCCATATG 60.056 47.826 10.20 10.20 41.48 1.78
520 521 3.167485 CACAAGCCCCATATTGCCATAT 58.833 45.455 0.00 0.00 0.00 1.78
521 522 2.176581 TCACAAGCCCCATATTGCCATA 59.823 45.455 0.00 0.00 0.00 2.74
522 523 1.063038 TCACAAGCCCCATATTGCCAT 60.063 47.619 0.00 0.00 0.00 4.40
523 524 0.334335 TCACAAGCCCCATATTGCCA 59.666 50.000 0.00 0.00 0.00 4.92
524 525 0.746659 GTCACAAGCCCCATATTGCC 59.253 55.000 0.00 0.00 0.00 4.52
525 526 0.746659 GGTCACAAGCCCCATATTGC 59.253 55.000 0.00 0.00 0.00 3.56
526 527 1.750778 GTGGTCACAAGCCCCATATTG 59.249 52.381 0.00 0.00 0.00 1.90
527 528 1.341976 GGTGGTCACAAGCCCCATATT 60.342 52.381 3.40 0.00 0.00 1.28
528 529 0.258774 GGTGGTCACAAGCCCCATAT 59.741 55.000 3.40 0.00 0.00 1.78
529 530 0.844661 AGGTGGTCACAAGCCCCATA 60.845 55.000 3.40 0.00 0.00 2.74
530 531 1.729267 AAGGTGGTCACAAGCCCCAT 61.729 55.000 3.40 0.00 0.00 4.00
531 532 2.391130 AAGGTGGTCACAAGCCCCA 61.391 57.895 3.40 0.00 0.00 4.96
532 533 1.903404 CAAGGTGGTCACAAGCCCC 60.903 63.158 3.40 0.00 0.00 5.80
533 534 1.903404 CCAAGGTGGTCACAAGCCC 60.903 63.158 3.40 0.00 31.35 5.19
534 535 2.564721 GCCAAGGTGGTCACAAGCC 61.565 63.158 3.40 0.00 40.46 4.35
535 536 2.564721 GGCCAAGGTGGTCACAAGC 61.565 63.158 0.00 0.40 42.98 4.01
536 537 2.260869 CGGCCAAGGTGGTCACAAG 61.261 63.158 2.24 0.00 43.88 3.16
537 538 2.203280 CGGCCAAGGTGGTCACAA 60.203 61.111 2.24 0.00 43.88 3.33
538 539 4.263572 CCGGCCAAGGTGGTCACA 62.264 66.667 2.24 0.00 43.88 3.58
539 540 3.901797 CTCCGGCCAAGGTGGTCAC 62.902 68.421 2.24 0.00 43.88 3.67
540 541 3.636231 CTCCGGCCAAGGTGGTCA 61.636 66.667 2.24 0.00 43.88 4.02
541 542 3.637273 ACTCCGGCCAAGGTGGTC 61.637 66.667 2.24 0.00 40.46 4.02
542 543 3.953775 CACTCCGGCCAAGGTGGT 61.954 66.667 2.24 0.00 40.46 4.16
543 544 4.722700 CCACTCCGGCCAAGGTGG 62.723 72.222 19.11 19.11 42.29 4.61
566 567 3.787001 CTGAACCCGCTCCCCCTC 61.787 72.222 0.00 0.00 0.00 4.30
569 570 3.327404 TTCCTGAACCCGCTCCCC 61.327 66.667 0.00 0.00 0.00 4.81
570 571 2.269241 CTTCCTGAACCCGCTCCC 59.731 66.667 0.00 0.00 0.00 4.30
571 572 2.436824 GCTTCCTGAACCCGCTCC 60.437 66.667 0.00 0.00 0.00 4.70
572 573 1.448717 GAGCTTCCTGAACCCGCTC 60.449 63.158 4.51 4.51 40.07 5.03
573 574 1.768684 TTGAGCTTCCTGAACCCGCT 61.769 55.000 0.00 0.00 0.00 5.52
574 575 1.302511 TTGAGCTTCCTGAACCCGC 60.303 57.895 0.00 0.00 0.00 6.13
575 576 0.250295 TGTTGAGCTTCCTGAACCCG 60.250 55.000 0.00 0.00 34.74 5.28
576 577 1.239347 GTGTTGAGCTTCCTGAACCC 58.761 55.000 0.00 0.00 34.74 4.11
577 578 1.239347 GGTGTTGAGCTTCCTGAACC 58.761 55.000 0.00 0.00 34.74 3.62
578 579 1.202818 AGGGTGTTGAGCTTCCTGAAC 60.203 52.381 0.00 0.00 35.98 3.18
579 580 1.072331 GAGGGTGTTGAGCTTCCTGAA 59.928 52.381 0.00 0.00 0.00 3.02
580 581 0.687354 GAGGGTGTTGAGCTTCCTGA 59.313 55.000 0.00 0.00 0.00 3.86
581 582 0.689623 AGAGGGTGTTGAGCTTCCTG 59.310 55.000 0.00 0.00 0.00 3.86
582 583 1.349357 GAAGAGGGTGTTGAGCTTCCT 59.651 52.381 0.00 0.00 31.24 3.36
583 584 1.814793 GAAGAGGGTGTTGAGCTTCC 58.185 55.000 0.00 0.00 31.24 3.46
584 585 1.000955 TCGAAGAGGGTGTTGAGCTTC 59.999 52.381 0.00 0.00 33.45 3.86
585 586 1.048601 TCGAAGAGGGTGTTGAGCTT 58.951 50.000 0.00 0.00 0.00 3.74
586 587 1.048601 TTCGAAGAGGGTGTTGAGCT 58.951 50.000 0.00 0.00 38.43 4.09
587 588 2.100605 ATTCGAAGAGGGTGTTGAGC 57.899 50.000 3.35 0.00 38.43 4.26
588 589 4.082190 TGACTATTCGAAGAGGGTGTTGAG 60.082 45.833 22.72 0.00 38.43 3.02
589 590 3.830178 TGACTATTCGAAGAGGGTGTTGA 59.170 43.478 22.72 0.00 38.43 3.18
590 591 4.188247 TGACTATTCGAAGAGGGTGTTG 57.812 45.455 22.72 0.00 38.43 3.33
591 592 4.884668 TTGACTATTCGAAGAGGGTGTT 57.115 40.909 22.72 2.16 38.43 3.32
592 593 4.562963 GGTTTGACTATTCGAAGAGGGTGT 60.563 45.833 22.72 3.45 38.43 4.16
593 594 3.933332 GGTTTGACTATTCGAAGAGGGTG 59.067 47.826 22.72 0.00 38.43 4.61
594 595 3.055312 GGGTTTGACTATTCGAAGAGGGT 60.055 47.826 22.72 4.57 38.43 4.34
595 596 3.532542 GGGTTTGACTATTCGAAGAGGG 58.467 50.000 22.72 1.12 38.43 4.30
596 597 3.532542 GGGGTTTGACTATTCGAAGAGG 58.467 50.000 22.72 8.70 38.43 3.69
597 598 3.532542 GGGGGTTTGACTATTCGAAGAG 58.467 50.000 17.90 17.90 38.43 2.85
598 599 3.622166 GGGGGTTTGACTATTCGAAGA 57.378 47.619 3.35 0.00 0.00 2.87
615 616 7.941790 TCATTTTTCCAAAATTTTAGAAGGGGG 59.058 33.333 10.88 3.91 0.00 5.40
616 617 8.916628 TCATTTTTCCAAAATTTTAGAAGGGG 57.083 30.769 10.88 4.54 0.00 4.79
624 625 9.070179 CAGGGAGATTCATTTTTCCAAAATTTT 57.930 29.630 0.00 0.00 0.00 1.82
625 626 7.666804 CCAGGGAGATTCATTTTTCCAAAATTT 59.333 33.333 0.00 0.00 0.00 1.82
626 627 7.017452 TCCAGGGAGATTCATTTTTCCAAAATT 59.983 33.333 0.00 0.00 0.00 1.82
627 628 6.501453 TCCAGGGAGATTCATTTTTCCAAAAT 59.499 34.615 0.00 0.00 0.00 1.82
628 629 5.843421 TCCAGGGAGATTCATTTTTCCAAAA 59.157 36.000 0.00 0.00 0.00 2.44
629 630 5.245977 GTCCAGGGAGATTCATTTTTCCAAA 59.754 40.000 0.00 0.00 0.00 3.28
630 631 4.772100 GTCCAGGGAGATTCATTTTTCCAA 59.228 41.667 0.00 0.00 0.00 3.53
631 632 4.044571 AGTCCAGGGAGATTCATTTTTCCA 59.955 41.667 0.00 0.00 0.00 3.53
632 633 4.604156 AGTCCAGGGAGATTCATTTTTCC 58.396 43.478 0.00 0.00 0.00 3.13
633 634 7.888250 ATAAGTCCAGGGAGATTCATTTTTC 57.112 36.000 0.00 0.00 0.00 2.29
634 635 9.942526 ATTATAAGTCCAGGGAGATTCATTTTT 57.057 29.630 0.00 0.00 0.00 1.94
643 644 9.892444 TTCAAGTATATTATAAGTCCAGGGAGA 57.108 33.333 0.00 0.00 0.00 3.71
646 647 9.204570 CGTTTCAAGTATATTATAAGTCCAGGG 57.795 37.037 0.00 0.00 0.00 4.45
647 648 9.976511 TCGTTTCAAGTATATTATAAGTCCAGG 57.023 33.333 0.00 0.00 0.00 4.45
678 679 6.888632 AGAGATGGCAGATTGACAAAGTATTT 59.111 34.615 0.00 0.00 39.86 1.40
679 680 6.421485 AGAGATGGCAGATTGACAAAGTATT 58.579 36.000 0.00 0.00 39.86 1.89
692 693 1.649321 ACTGGTCAAGAGATGGCAGA 58.351 50.000 0.00 0.00 34.42 4.26
707 708 3.564511 CGTTTCTGTTTATGGCAACTGG 58.435 45.455 0.00 0.00 37.61 4.00
714 715 3.007635 GGGAGACCGTTTCTGTTTATGG 58.992 50.000 0.00 0.00 43.64 2.74
734 735 1.725557 ATCCACACGAGATCGGACGG 61.726 60.000 7.22 3.75 44.95 4.79
745 746 3.554524 GTGTTGATGTTTGATCCACACG 58.445 45.455 0.00 0.00 35.80 4.49
777 778 2.539274 CGTTGCCAAGAATTGTGGTTTG 59.461 45.455 6.62 0.00 46.99 2.93
791 799 0.893270 CTGGGTCAATTCCGTTGCCA 60.893 55.000 0.00 0.00 37.74 4.92
797 805 1.453155 CTTGGTCTGGGTCAATTCCG 58.547 55.000 0.00 0.00 0.00 4.30
814 822 1.536174 CATGGGTTGGGTTGGGCTT 60.536 57.895 0.00 0.00 0.00 4.35
819 834 3.381136 CCGGCATGGGTTGGGTTG 61.381 66.667 0.00 0.00 0.00 3.77
834 849 5.820423 TGATGGATGTTATAAGTTTGACCCG 59.180 40.000 0.00 0.00 0.00 5.28
835 850 7.502226 TGATGATGGATGTTATAAGTTTGACCC 59.498 37.037 0.00 0.00 0.00 4.46
843 858 6.537355 AGTGGGTGATGATGGATGTTATAAG 58.463 40.000 0.00 0.00 0.00 1.73
844 859 6.465751 GGAGTGGGTGATGATGGATGTTATAA 60.466 42.308 0.00 0.00 0.00 0.98
845 860 5.013079 GGAGTGGGTGATGATGGATGTTATA 59.987 44.000 0.00 0.00 0.00 0.98
846 861 4.202503 GGAGTGGGTGATGATGGATGTTAT 60.203 45.833 0.00 0.00 0.00 1.89
847 862 3.136443 GGAGTGGGTGATGATGGATGTTA 59.864 47.826 0.00 0.00 0.00 2.41
848 863 2.092212 GGAGTGGGTGATGATGGATGTT 60.092 50.000 0.00 0.00 0.00 2.71
849 864 1.492176 GGAGTGGGTGATGATGGATGT 59.508 52.381 0.00 0.00 0.00 3.06
850 865 1.202855 GGGAGTGGGTGATGATGGATG 60.203 57.143 0.00 0.00 0.00 3.51
851 866 1.143813 GGGAGTGGGTGATGATGGAT 58.856 55.000 0.00 0.00 0.00 3.41
852 867 0.988145 GGGGAGTGGGTGATGATGGA 60.988 60.000 0.00 0.00 0.00 3.41
853 868 1.281199 TGGGGAGTGGGTGATGATGG 61.281 60.000 0.00 0.00 0.00 3.51
854 869 0.182061 CTGGGGAGTGGGTGATGATG 59.818 60.000 0.00 0.00 0.00 3.07
855 870 1.639635 GCTGGGGAGTGGGTGATGAT 61.640 60.000 0.00 0.00 0.00 2.45
856 871 2.300967 GCTGGGGAGTGGGTGATGA 61.301 63.158 0.00 0.00 0.00 2.92
877 892 3.597255 GAAGTATTTATAGGGAGGCCGC 58.403 50.000 0.00 0.00 0.00 6.53
878 893 3.581332 TGGAAGTATTTATAGGGAGGCCG 59.419 47.826 0.00 0.00 0.00 6.13
880 895 5.339282 GGGATGGAAGTATTTATAGGGAGGC 60.339 48.000 0.00 0.00 0.00 4.70
883 898 5.743832 TGGGGATGGAAGTATTTATAGGGA 58.256 41.667 0.00 0.00 0.00 4.20
884 899 6.246163 GTTGGGGATGGAAGTATTTATAGGG 58.754 44.000 0.00 0.00 0.00 3.53
911 947 2.498167 GTGTTGATGAGCTGACCAAGT 58.502 47.619 0.00 0.00 0.00 3.16
915 951 1.639298 GCCGTGTTGATGAGCTGACC 61.639 60.000 0.00 0.00 0.00 4.02
921 957 0.321564 TTCCCTGCCGTGTTGATGAG 60.322 55.000 0.00 0.00 0.00 2.90
933 969 1.373873 GCTTTTGCTGCTTCCCTGC 60.374 57.895 0.00 0.00 43.35 4.85
957 994 0.304705 CTGTTGTCGCTTCGTTTGCT 59.695 50.000 0.00 0.00 0.00 3.91
958 995 1.262166 GCTGTTGTCGCTTCGTTTGC 61.262 55.000 0.00 0.00 0.00 3.68
961 998 2.594962 CCGCTGTTGTCGCTTCGTT 61.595 57.895 0.00 0.00 0.00 3.85
962 999 3.036084 CCGCTGTTGTCGCTTCGT 61.036 61.111 0.00 0.00 0.00 3.85
963 1000 2.733218 TCCGCTGTTGTCGCTTCG 60.733 61.111 0.00 0.00 0.00 3.79
964 1001 2.668280 GGTCCGCTGTTGTCGCTTC 61.668 63.158 0.00 0.00 0.00 3.86
965 1002 2.665185 GGTCCGCTGTTGTCGCTT 60.665 61.111 0.00 0.00 0.00 4.68
966 1003 3.865929 CTGGTCCGCTGTTGTCGCT 62.866 63.158 0.00 0.00 0.00 4.93
967 1004 3.414700 CTGGTCCGCTGTTGTCGC 61.415 66.667 0.00 0.00 0.00 5.19
968 1005 3.414700 GCTGGTCCGCTGTTGTCG 61.415 66.667 0.00 0.00 0.00 4.35
969 1006 2.280797 TGCTGGTCCGCTGTTGTC 60.281 61.111 7.14 0.00 0.00 3.18
970 1007 2.591715 GTGCTGGTCCGCTGTTGT 60.592 61.111 7.14 0.00 0.00 3.32
971 1008 3.357079 GGTGCTGGTCCGCTGTTG 61.357 66.667 7.14 0.00 0.00 3.33
976 1013 4.966787 TTTGGGGTGCTGGTCCGC 62.967 66.667 0.00 0.00 38.21 5.54
979 1016 0.895559 CTTCCTTTGGGGTGCTGGTC 60.896 60.000 0.00 0.00 36.25 4.02
980 1017 1.153756 CTTCCTTTGGGGTGCTGGT 59.846 57.895 0.00 0.00 36.25 4.00
981 1018 2.278330 GCTTCCTTTGGGGTGCTGG 61.278 63.158 0.00 0.00 36.25 4.85
985 1022 1.891722 GCCATGCTTCCTTTGGGGTG 61.892 60.000 0.00 0.00 36.25 4.61
986 1023 1.610379 GCCATGCTTCCTTTGGGGT 60.610 57.895 0.00 0.00 36.25 4.95
988 1025 2.713967 CCGCCATGCTTCCTTTGGG 61.714 63.158 0.00 0.00 0.00 4.12
989 1026 2.887360 CCGCCATGCTTCCTTTGG 59.113 61.111 0.00 0.00 0.00 3.28
990 1027 2.182537 GCCGCCATGCTTCCTTTG 59.817 61.111 0.00 0.00 0.00 2.77
991 1028 2.283101 TGCCGCCATGCTTCCTTT 60.283 55.556 0.00 0.00 0.00 3.11
992 1029 3.064324 GTGCCGCCATGCTTCCTT 61.064 61.111 0.00 0.00 0.00 3.36
993 1030 3.984193 GAGTGCCGCCATGCTTCCT 62.984 63.158 0.00 0.00 0.00 3.36
1038 1103 4.274700 GGCCGCGCTATGGACGTA 62.275 66.667 5.56 0.00 0.00 3.57
1120 1197 1.280421 GCTGAGGTTGTCCTGATCCTT 59.720 52.381 0.00 0.00 45.24 3.36
1121 1198 0.908198 GCTGAGGTTGTCCTGATCCT 59.092 55.000 0.00 0.00 45.24 3.24
1122 1199 0.107459 GGCTGAGGTTGTCCTGATCC 60.107 60.000 0.00 0.00 45.24 3.36
1123 1200 0.908198 AGGCTGAGGTTGTCCTGATC 59.092 55.000 0.00 0.00 45.24 2.92
1124 1201 0.908198 GAGGCTGAGGTTGTCCTGAT 59.092 55.000 0.00 0.00 45.24 2.90
1125 1202 0.471780 TGAGGCTGAGGTTGTCCTGA 60.472 55.000 0.00 0.00 45.24 3.86
1281 1379 1.529010 CAGCAGCAGGTGGTTCCAA 60.529 57.895 0.36 0.00 39.53 3.53
1299 1397 1.003233 GAGGGAGTTGGTGGAGTGC 60.003 63.158 0.00 0.00 0.00 4.40
1893 2012 2.047274 CCGATGAACACCGTGGCT 60.047 61.111 3.03 0.00 0.00 4.75
2040 2159 4.404715 TCCTCCTGGATTTTACGGTAGAAG 59.595 45.833 0.00 0.00 37.46 2.85
2049 2168 3.388024 CCTCGATGTCCTCCTGGATTTTA 59.612 47.826 0.00 0.00 45.29 1.52
2052 2171 1.418334 CCTCGATGTCCTCCTGGATT 58.582 55.000 0.00 0.00 45.29 3.01
2124 2243 1.734388 GCTTCAACGCCACCTTGGTT 61.734 55.000 0.00 0.00 40.46 3.67
2155 2274 2.301870 TGAACTGCTTAAGGTCCGACAT 59.698 45.455 4.29 0.00 42.55 3.06
2166 2285 2.356125 GGCCATCTTCCTGAACTGCTTA 60.356 50.000 0.00 0.00 0.00 3.09
2243 2362 0.673644 GTCAGTGAATGGGTGGGTCG 60.674 60.000 0.00 0.00 0.00 4.79
2244 2363 0.693049 AGTCAGTGAATGGGTGGGTC 59.307 55.000 0.00 0.00 0.00 4.46
2245 2364 0.693049 GAGTCAGTGAATGGGTGGGT 59.307 55.000 0.00 0.00 0.00 4.51
2246 2365 0.692476 TGAGTCAGTGAATGGGTGGG 59.308 55.000 0.00 0.00 0.00 4.61
2254 4849 4.974399 TCTAGAGTGAGTGAGTCAGTGAA 58.026 43.478 4.86 0.00 39.11 3.18
2260 4857 5.820423 TCAGCTATTCTAGAGTGAGTGAGTC 59.180 44.000 0.00 0.00 0.00 3.36
2285 4889 9.368674 CCTATACACATCTCATGAATTCATCTC 57.631 37.037 18.16 0.00 33.61 2.75
2300 4905 5.998363 GGAACCCAGAATTCCTATACACATC 59.002 44.000 0.65 0.00 42.15 3.06
2317 4922 9.589461 TTACAAAAGAATTAGTAATGGAACCCA 57.411 29.630 0.00 0.00 38.19 4.51
2391 4996 3.449737 CCTGTGCAGATTGGGATTGAAAT 59.550 43.478 0.02 0.00 0.00 2.17
2405 5010 2.398498 GCGAGTGTATATCCTGTGCAG 58.602 52.381 0.00 0.00 0.00 4.41
2413 5018 5.035443 ACTTCAAACTCGCGAGTGTATATC 58.965 41.667 39.77 0.00 41.58 1.63
2414 5019 4.995124 ACTTCAAACTCGCGAGTGTATAT 58.005 39.130 39.77 22.78 41.58 0.86
2485 5121 1.589727 GCATTTAGCACGCCCATGC 60.590 57.895 2.90 2.90 46.50 4.06
2567 5240 2.287248 GCTCAGCTCAGTTCAAAACACC 60.287 50.000 0.00 0.00 0.00 4.16
2577 5250 2.527624 TGGGTGGCTCAGCTCAGT 60.528 61.111 0.00 0.00 31.98 3.41
2605 5278 6.554334 TTTGTATGAACAGAAACAGGCTAC 57.446 37.500 0.00 0.00 36.83 3.58
2652 5334 0.820891 AGGCGTACGTATGGACCGAT 60.821 55.000 17.90 0.00 0.00 4.18
2692 5374 0.239347 GATAATGATGCACGGCTGCC 59.761 55.000 9.11 9.11 43.51 4.85
2699 5381 7.144000 GGAAAATTCCAGAGATAATGATGCAC 58.856 38.462 7.32 0.00 46.76 4.57
2700 5382 7.281040 GGAAAATTCCAGAGATAATGATGCA 57.719 36.000 7.32 0.00 46.76 3.96
2818 5652 8.540388 AGAATTAGTCCAGTGAGCTATTAACAA 58.460 33.333 0.00 0.00 0.00 2.83
2821 5655 8.417106 CAGAGAATTAGTCCAGTGAGCTATTAA 58.583 37.037 0.00 0.00 0.00 1.40
2853 5689 3.294079 CCGGCCGGACGTTATTAAT 57.706 52.632 41.82 0.00 37.50 1.40
2854 5690 4.831698 CCGGCCGGACGTTATTAA 57.168 55.556 41.82 0.00 37.50 1.40
2892 5728 4.511826 TCGCTTTCTGAAGGAAAAGAAGTC 59.488 41.667 3.45 0.00 42.52 3.01
2940 5776 2.037144 TGGGATTAGGAAGCCGTAGTC 58.963 52.381 0.00 0.00 38.00 2.59
2941 5777 2.170012 TGGGATTAGGAAGCCGTAGT 57.830 50.000 0.00 0.00 38.00 2.73
2942 5778 2.632996 TCATGGGATTAGGAAGCCGTAG 59.367 50.000 0.00 0.00 38.00 3.51
2943 5779 2.684943 TCATGGGATTAGGAAGCCGTA 58.315 47.619 0.00 0.00 38.00 4.02
2944 5780 1.507140 TCATGGGATTAGGAAGCCGT 58.493 50.000 0.00 0.00 38.00 5.68
2945 5781 2.638480 TTCATGGGATTAGGAAGCCG 57.362 50.000 0.00 0.00 38.00 5.52
2946 5782 5.880901 TCTTATTCATGGGATTAGGAAGCC 58.119 41.667 0.00 0.00 35.82 4.35
2993 5844 6.127338 CCTTTCTTTTGTTTTCTGGGAGAAGT 60.127 38.462 0.00 0.00 35.37 3.01
3019 5870 9.675464 TGATTATTGGGTCGTTAGATTAGTTTT 57.325 29.630 0.00 0.00 0.00 2.43
3063 5915 1.463693 CCGTACGTCGACTCTGAACAG 60.464 57.143 15.21 0.00 42.86 3.16
3083 5935 1.926511 CTGAATTGACCCTGCCGTGC 61.927 60.000 0.00 0.00 0.00 5.34
3084 5936 1.308069 CCTGAATTGACCCTGCCGTG 61.308 60.000 0.00 0.00 0.00 4.94
3130 5993 0.592637 CATTCAGCCGTCAACTTGCA 59.407 50.000 0.00 0.00 0.00 4.08
3131 5994 0.593128 ACATTCAGCCGTCAACTTGC 59.407 50.000 0.00 0.00 0.00 4.01
3151 6017 1.207329 GAATCGTAGGAAGTGGCACCT 59.793 52.381 15.27 7.23 39.95 4.00
3189 6055 5.064452 ACACGCAGAATCTGAATCTGATTTC 59.936 40.000 23.37 7.30 45.74 2.17
3193 6059 3.599730 ACACGCAGAATCTGAATCTGA 57.400 42.857 23.37 0.00 45.74 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.