Multiple sequence alignment - TraesCS7A01G105300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G105300 chr7A 100.000 5184 0 0 1 5184 63871147 63876330 0.000000e+00 9574.0
1 TraesCS7A01G105300 chr7A 94.048 168 10 0 4094 4261 66753672 66753839 6.660000e-64 255.0
2 TraesCS7A01G105300 chrUn 89.019 1457 104 31 2672 4095 84017815 84016382 0.000000e+00 1753.0
3 TraesCS7A01G105300 chrUn 83.615 946 108 23 4261 5184 383689654 383688734 0.000000e+00 845.0
4 TraesCS7A01G105300 chrUn 82.741 956 108 23 4261 5184 239737496 239736566 0.000000e+00 798.0
5 TraesCS7A01G105300 chrUn 84.450 836 97 18 4360 5184 375368979 375368166 0.000000e+00 793.0
6 TraesCS7A01G105300 chrUn 88.832 197 10 3 708 896 84020090 84019898 1.120000e-56 231.0
7 TraesCS7A01G105300 chrUn 81.739 230 20 15 2475 2684 84018086 84017859 6.900000e-39 172.0
8 TraesCS7A01G105300 chr2A 97.294 924 22 3 4262 5184 479841957 479842878 0.000000e+00 1565.0
9 TraesCS7A01G105300 chr2A 86.074 596 83 0 3479 4074 763367408 763368003 4.380000e-180 641.0
10 TraesCS7A01G105300 chr2A 88.106 454 42 4 1273 1714 763364627 763365080 3.550000e-146 529.0
11 TraesCS7A01G105300 chr2A 96.591 176 6 0 1713 1888 662605592 662605417 5.080000e-75 292.0
12 TraesCS7A01G105300 chr2A 96.450 169 6 0 4093 4261 734516815 734516647 3.950000e-71 279.0
13 TraesCS7A01G105300 chr2A 95.758 165 7 0 1713 1877 686832697 686832533 3.080000e-67 267.0
14 TraesCS7A01G105300 chr2A 94.545 55 0 2 2316 2369 749872464 749872412 1.200000e-11 82.4
15 TraesCS7A01G105300 chr2A 86.567 67 5 4 4258 4323 31827521 31827458 2.590000e-08 71.3
16 TraesCS7A01G105300 chr2A 86.567 67 5 4 4258 4323 82579648 82579585 2.590000e-08 71.3
17 TraesCS7A01G105300 chr7D 93.993 849 45 3 3247 4092 59734518 59733673 0.000000e+00 1280.0
18 TraesCS7A01G105300 chr7D 86.184 1064 90 31 698 1714 59739133 59738080 0.000000e+00 1098.0
19 TraesCS7A01G105300 chr7D 87.416 445 33 20 2672 3103 59735535 59735101 1.680000e-134 490.0
20 TraesCS7A01G105300 chr7D 91.045 335 22 2 1 329 589606925 589607257 3.680000e-121 446.0
21 TraesCS7A01G105300 chr7D 81.385 231 20 10 2475 2685 59735794 59735567 3.210000e-37 167.0
22 TraesCS7A01G105300 chr7D 86.667 150 13 3 1955 2097 59737351 59737202 5.370000e-35 159.0
23 TraesCS7A01G105300 chr7D 91.262 103 4 2 339 436 589607352 589607454 9.050000e-28 135.0
24 TraesCS7A01G105300 chr6A 84.755 715 95 5 3369 4075 490496643 490495935 0.000000e+00 704.0
25 TraesCS7A01G105300 chr6A 90.497 463 29 6 1273 1721 490500108 490499647 9.610000e-167 597.0
26 TraesCS7A01G105300 chr6A 87.281 456 44 7 1273 1715 490840892 490840438 4.630000e-140 508.0
27 TraesCS7A01G105300 chr6A 95.808 167 7 0 1712 1878 30446040 30446206 2.380000e-68 270.0
28 TraesCS7A01G105300 chr6A 95.238 168 8 0 4094 4261 584503604 584503437 3.080000e-67 267.0
29 TraesCS7A01G105300 chr6A 94.706 170 8 1 4093 4261 97611638 97611469 3.980000e-66 263.0
30 TraesCS7A01G105300 chr6A 86.567 67 5 4 4258 4323 277670667 277670604 2.590000e-08 71.3
31 TraesCS7A01G105300 chr6D 84.605 708 104 3 3369 4075 352354479 352355182 0.000000e+00 699.0
32 TraesCS7A01G105300 chr6D 90.693 462 30 5 1273 1721 352351601 352352062 2.070000e-168 603.0
33 TraesCS7A01G105300 chr6D 86.842 456 46 5 1273 1715 352149456 352149910 1.000000e-136 497.0
34 TraesCS7A01G105300 chr6D 78.947 627 121 8 3454 4074 352152106 352152727 2.890000e-112 416.0
35 TraesCS7A01G105300 chr6B 84.419 706 106 3 3372 4075 526721671 526720968 0.000000e+00 691.0
36 TraesCS7A01G105300 chr6B 94.444 450 16 2 1 442 687171712 687171264 0.000000e+00 684.0
37 TraesCS7A01G105300 chr6B 91.006 467 29 3 1273 1726 526725021 526724555 7.380000e-173 617.0
38 TraesCS7A01G105300 chr6B 86.404 456 48 5 1273 1715 526742144 526741690 2.170000e-133 486.0
39 TraesCS7A01G105300 chr6B 79.479 614 116 7 3467 4074 526738556 526737947 1.330000e-115 427.0
40 TraesCS7A01G105300 chr6B 95.417 240 8 1 450 689 687171115 687170879 3.790000e-101 379.0
41 TraesCS7A01G105300 chr2B 86.074 596 83 0 3479 4074 797625442 797626037 4.380000e-180 641.0
42 TraesCS7A01G105300 chr2B 86.842 456 48 4 1273 1716 797622805 797623260 2.790000e-137 499.0
43 TraesCS7A01G105300 chr2D 81.576 787 99 29 4256 5035 649876902 649877649 4.440000e-170 608.0
44 TraesCS7A01G105300 chr2D 97.917 48 1 0 2319 2366 261736743 261736790 3.330000e-12 84.2
45 TraesCS7A01G105300 chr2D 84.416 77 8 3 4258 4334 28883520 28883592 7.200000e-09 73.1
46 TraesCS7A01G105300 chr2D 100.000 34 0 0 1711 1744 619372828 619372795 4.330000e-06 63.9
47 TraesCS7A01G105300 chr3D 80.175 802 102 29 4258 5038 575525271 575524506 9.810000e-152 547.0
48 TraesCS7A01G105300 chr3D 82.955 88 10 2 3276 3363 175550168 175550086 2.000000e-09 75.0
49 TraesCS7A01G105300 chr3D 90.909 55 3 2 4247 4299 282330576 282330522 7.200000e-09 73.1
50 TraesCS7A01G105300 chr4B 90.557 413 28 7 1 405 564792389 564792798 2.120000e-148 536.0
51 TraesCS7A01G105300 chr4B 89.756 205 17 2 450 654 564792928 564793128 5.150000e-65 259.0
52 TraesCS7A01G105300 chr4B 92.727 55 4 0 2316 2370 585818231 585818177 4.300000e-11 80.5
53 TraesCS7A01G105300 chr4B 92.683 41 2 1 1709 1749 413830721 413830760 2.020000e-04 58.4
54 TraesCS7A01G105300 chr5D 91.343 335 20 3 1 329 436805499 436805830 2.850000e-122 449.0
55 TraesCS7A01G105300 chr5D 88.095 336 33 3 2 330 244644378 244644043 4.870000e-105 392.0
56 TraesCS7A01G105300 chr5D 92.929 198 13 1 492 689 436820322 436820518 2.360000e-73 287.0
57 TraesCS7A01G105300 chr5D 95.946 74 3 0 339 412 436805925 436805998 2.540000e-23 121.0
58 TraesCS7A01G105300 chr5D 100.000 34 0 0 1711 1744 138470372 138470339 4.330000e-06 63.9
59 TraesCS7A01G105300 chr5A 88.757 338 30 1 1 330 328930212 328929875 1.740000e-109 407.0
60 TraesCS7A01G105300 chr5A 96.450 169 6 0 4093 4261 138077615 138077447 3.950000e-71 279.0
61 TraesCS7A01G105300 chr5A 96.407 167 6 0 1711 1877 570380391 570380225 5.110000e-70 276.0
62 TraesCS7A01G105300 chr5A 95.918 49 0 1 2319 2367 321890096 321890050 1.550000e-10 78.7
63 TraesCS7A01G105300 chr5B 88.855 332 31 4 2 328 278106892 278106562 2.250000e-108 403.0
64 TraesCS7A01G105300 chr1A 97.041 169 5 0 4093 4261 192591913 192591745 8.500000e-73 285.0
65 TraesCS7A01G105300 chr1A 94.675 169 7 1 4093 4261 574822297 574822463 1.430000e-65 261.0
66 TraesCS7A01G105300 chr1A 91.071 56 5 0 2320 2375 540502236 540502181 5.570000e-10 76.8
67 TraesCS7A01G105300 chr1A 89.831 59 3 3 4247 4303 201864672 201864615 7.200000e-09 73.1
68 TraesCS7A01G105300 chr3B 95.833 168 6 1 1711 1878 685076704 685076870 2.380000e-68 270.0
69 TraesCS7A01G105300 chr3B 82.927 82 9 2 3282 3363 254947234 254947158 9.310000e-08 69.4
70 TraesCS7A01G105300 chr3A 94.545 165 9 0 1713 1877 714941793 714941957 6.660000e-64 255.0
71 TraesCS7A01G105300 chr3A 82.927 82 9 2 3282 3363 215968854 215968778 9.310000e-08 69.4
72 TraesCS7A01G105300 chr7B 92.857 56 2 2 4247 4300 151655055 151655110 4.300000e-11 80.5
73 TraesCS7A01G105300 chr4A 94.340 53 1 1 2316 2368 112727951 112728001 4.300000e-11 80.5
74 TraesCS7A01G105300 chr1B 95.918 49 2 0 2319 2367 516880069 516880021 4.300000e-11 80.5
75 TraesCS7A01G105300 chr1B 95.918 49 2 0 2319 2367 516905605 516905557 4.300000e-11 80.5
76 TraesCS7A01G105300 chr1D 95.918 49 0 1 2319 2367 405804 405850 1.550000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G105300 chr7A 63871147 63876330 5183 False 9574.000000 9574 100.0000 1 5184 1 chr7A.!!$F1 5183
1 TraesCS7A01G105300 chrUn 383688734 383689654 920 True 845.000000 845 83.6150 4261 5184 1 chrUn.!!$R3 923
2 TraesCS7A01G105300 chrUn 239736566 239737496 930 True 798.000000 798 82.7410 4261 5184 1 chrUn.!!$R1 923
3 TraesCS7A01G105300 chrUn 375368166 375368979 813 True 793.000000 793 84.4500 4360 5184 1 chrUn.!!$R2 824
4 TraesCS7A01G105300 chrUn 84016382 84020090 3708 True 718.666667 1753 86.5300 708 4095 3 chrUn.!!$R4 3387
5 TraesCS7A01G105300 chr2A 479841957 479842878 921 False 1565.000000 1565 97.2940 4262 5184 1 chr2A.!!$F1 922
6 TraesCS7A01G105300 chr2A 763364627 763368003 3376 False 585.000000 641 87.0900 1273 4074 2 chr2A.!!$F2 2801
7 TraesCS7A01G105300 chr7D 59733673 59739133 5460 True 638.800000 1280 87.1290 698 4092 5 chr7D.!!$R1 3394
8 TraesCS7A01G105300 chr7D 589606925 589607454 529 False 290.500000 446 91.1535 1 436 2 chr7D.!!$F1 435
9 TraesCS7A01G105300 chr6A 490495935 490500108 4173 True 650.500000 704 87.6260 1273 4075 2 chr6A.!!$R5 2802
10 TraesCS7A01G105300 chr6D 352351601 352355182 3581 False 651.000000 699 87.6490 1273 4075 2 chr6D.!!$F2 2802
11 TraesCS7A01G105300 chr6D 352149456 352152727 3271 False 456.500000 497 82.8945 1273 4074 2 chr6D.!!$F1 2801
12 TraesCS7A01G105300 chr6B 526720968 526725021 4053 True 654.000000 691 87.7125 1273 4075 2 chr6B.!!$R1 2802
13 TraesCS7A01G105300 chr6B 687170879 687171712 833 True 531.500000 684 94.9305 1 689 2 chr6B.!!$R3 688
14 TraesCS7A01G105300 chr6B 526737947 526742144 4197 True 456.500000 486 82.9415 1273 4074 2 chr6B.!!$R2 2801
15 TraesCS7A01G105300 chr2B 797622805 797626037 3232 False 570.000000 641 86.4580 1273 4074 2 chr2B.!!$F1 2801
16 TraesCS7A01G105300 chr2D 649876902 649877649 747 False 608.000000 608 81.5760 4256 5035 1 chr2D.!!$F3 779
17 TraesCS7A01G105300 chr3D 575524506 575525271 765 True 547.000000 547 80.1750 4258 5038 1 chr3D.!!$R3 780
18 TraesCS7A01G105300 chr4B 564792389 564793128 739 False 397.500000 536 90.1565 1 654 2 chr4B.!!$F2 653

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
445 542 0.666374 CGTGGTCAAGAAAACACCCC 59.334 55.0 0.0 0.0 0.00 4.95 F
2303 7903 0.037303 TCTTACTCCCTCCGTCACGT 59.963 55.0 0.0 0.0 0.00 4.49 F
2331 8087 0.039618 AACGGTTTGGATCTGCCCAT 59.960 50.0 0.0 0.0 35.87 4.00 F
3159 11111 0.250467 TGCAGTTCTGGGCTCAACTC 60.250 55.0 0.0 0.0 30.06 3.01 F
3407 11416 0.650512 ATCGCTTCGTTTACATGGCG 59.349 50.0 0.0 0.0 43.22 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2312 7912 0.039618 ATGGGCAGATCCAAACCGTT 59.960 50.000 0.0 0.0 40.62 4.44 R
3391 11399 0.096454 GGTCGCCATGTAAACGAAGC 59.904 55.000 0.0 0.0 37.60 3.86 R
3531 11573 0.744771 GAACTTGGAGCGGGACATCC 60.745 60.000 0.0 0.0 36.05 3.51 R
4114 12156 1.541147 TGGCTTCGAGCTCCAAATTTG 59.459 47.619 11.4 11.4 41.99 2.32 R
4546 12617 2.093500 TGAAGGGATGAACATGTCTCCG 60.093 50.000 0.0 0.0 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 1.730064 TGATTGACCTTTTAGACGCGC 59.270 47.619 5.73 0.00 0.00 6.86
215 222 2.289840 GCCATGGCAAGGGAATGTT 58.710 52.632 32.08 0.00 41.49 2.71
235 242 4.999950 TGTTGCAACTGTTTGGTTTGATTT 59.000 33.333 28.61 0.00 32.81 2.17
427 524 1.832608 TCCATGGGGAGGACGATCG 60.833 63.158 14.88 14.88 38.64 3.69
436 533 0.809385 GAGGACGATCGTGGTCAAGA 59.191 55.000 28.12 0.00 36.12 3.02
439 536 2.036733 AGGACGATCGTGGTCAAGAAAA 59.963 45.455 28.12 0.00 36.12 2.29
442 539 2.542595 ACGATCGTGGTCAAGAAAACAC 59.457 45.455 22.06 0.00 0.00 3.32
443 540 2.096417 CGATCGTGGTCAAGAAAACACC 60.096 50.000 7.03 0.00 0.00 4.16
444 541 1.670791 TCGTGGTCAAGAAAACACCC 58.329 50.000 0.00 0.00 0.00 4.61
445 542 0.666374 CGTGGTCAAGAAAACACCCC 59.334 55.000 0.00 0.00 0.00 4.95
446 543 1.037493 GTGGTCAAGAAAACACCCCC 58.963 55.000 0.00 0.00 0.00 5.40
470 708 3.389983 TCTGGTGGCTGTTTGTTAGTACT 59.610 43.478 0.00 0.00 0.00 2.73
471 709 4.589798 TCTGGTGGCTGTTTGTTAGTACTA 59.410 41.667 0.00 0.00 0.00 1.82
472 710 4.634199 TGGTGGCTGTTTGTTAGTACTAC 58.366 43.478 0.91 0.00 0.00 2.73
610 848 6.307318 GGTGATATACGATCGTGAAATACACC 59.693 42.308 30.23 29.21 45.73 4.16
625 863 1.217511 CACCGAGCAGCACAGATCT 59.782 57.895 0.00 0.00 0.00 2.75
689 927 3.041946 AGGCTCAGAAACGAATATCCCT 58.958 45.455 0.00 0.00 0.00 4.20
690 928 4.039245 CAGGCTCAGAAACGAATATCCCTA 59.961 45.833 0.00 0.00 0.00 3.53
691 929 4.841246 AGGCTCAGAAACGAATATCCCTAT 59.159 41.667 0.00 0.00 0.00 2.57
692 930 4.932200 GGCTCAGAAACGAATATCCCTATG 59.068 45.833 0.00 0.00 0.00 2.23
693 931 5.511545 GGCTCAGAAACGAATATCCCTATGT 60.512 44.000 0.00 0.00 0.00 2.29
694 932 5.406780 GCTCAGAAACGAATATCCCTATGTG 59.593 44.000 0.00 0.00 0.00 3.21
695 933 6.724893 TCAGAAACGAATATCCCTATGTGA 57.275 37.500 0.00 0.00 0.00 3.58
696 934 6.749139 TCAGAAACGAATATCCCTATGTGAG 58.251 40.000 0.00 0.00 0.00 3.51
697 935 5.928839 CAGAAACGAATATCCCTATGTGAGG 59.071 44.000 0.00 0.00 46.25 3.86
698 936 5.602978 AGAAACGAATATCCCTATGTGAGGT 59.397 40.000 0.00 0.00 45.03 3.85
699 937 5.888982 AACGAATATCCCTATGTGAGGTT 57.111 39.130 0.00 0.00 45.03 3.50
700 938 5.470047 ACGAATATCCCTATGTGAGGTTC 57.530 43.478 0.00 0.00 45.03 3.62
701 939 4.899457 ACGAATATCCCTATGTGAGGTTCA 59.101 41.667 0.00 0.00 45.03 3.18
702 940 5.544176 ACGAATATCCCTATGTGAGGTTCAT 59.456 40.000 0.00 0.00 45.03 2.57
703 941 6.043243 ACGAATATCCCTATGTGAGGTTCATT 59.957 38.462 0.00 0.00 45.03 2.57
704 942 6.936900 CGAATATCCCTATGTGAGGTTCATTT 59.063 38.462 0.00 0.00 45.03 2.32
705 943 7.445402 CGAATATCCCTATGTGAGGTTCATTTT 59.555 37.037 0.00 0.00 45.03 1.82
706 944 8.469309 AATATCCCTATGTGAGGTTCATTTTG 57.531 34.615 0.00 0.00 45.03 2.44
745 983 1.656818 CCATTGGCATGTCCGTGGAC 61.657 60.000 12.17 12.17 42.61 4.02
809 1047 5.855925 CGAAAGTTTTGCACTGCATGTTATA 59.144 36.000 4.10 0.00 38.76 0.98
852 1091 5.779241 ATCACCACTTGGATTTTCTAGGA 57.221 39.130 1.14 0.00 38.94 2.94
863 1102 8.650143 TTGGATTTTCTAGGAACTAATTGCTT 57.350 30.769 0.00 0.00 42.17 3.91
912 1176 2.829720 ACAAGATTACGTAGGACAGCCA 59.170 45.455 0.00 0.00 36.29 4.75
975 1242 3.728845 ACCTTACCTATAGCACGCAATG 58.271 45.455 0.00 0.00 0.00 2.82
997 1264 2.332654 CCACAACTGGCCGCTTACC 61.333 63.158 0.00 0.00 0.00 2.85
1028 1295 6.172630 CCTAAATGCCCAGCAAAAATAAACT 58.827 36.000 0.00 0.00 43.62 2.66
1066 1695 2.902608 TCCATAGAACCTGGACACACT 58.097 47.619 0.00 0.00 37.87 3.55
1068 1697 3.767673 TCCATAGAACCTGGACACACTAC 59.232 47.826 0.00 0.00 37.87 2.73
1070 1699 1.700955 AGAACCTGGACACACTACGT 58.299 50.000 0.00 0.00 0.00 3.57
1089 1720 1.742268 GTGTACGTAGAGAGGGTCACC 59.258 57.143 0.00 0.00 0.00 4.02
1119 1750 3.181536 GCTTCTGCTCATATAATCACGCG 60.182 47.826 3.53 3.53 36.03 6.01
1144 1775 3.535962 CGGCCCTCAGCTCCTCTC 61.536 72.222 0.00 0.00 43.05 3.20
1146 1777 3.535962 GCCCTCAGCTCCTCTCCG 61.536 72.222 0.00 0.00 38.99 4.63
1147 1778 2.837291 CCCTCAGCTCCTCTCCGG 60.837 72.222 0.00 0.00 0.00 5.14
1148 1779 3.535962 CCTCAGCTCCTCTCCGGC 61.536 72.222 0.00 0.00 0.00 6.13
1163 1794 2.257371 GGCACGACGCACTACAGA 59.743 61.111 0.00 0.00 45.17 3.41
1164 1795 1.801913 GGCACGACGCACTACAGAG 60.802 63.158 0.00 0.00 45.17 3.35
1165 1796 2.437343 GCACGACGCACTACAGAGC 61.437 63.158 0.00 0.00 41.79 4.09
1166 1797 1.081442 CACGACGCACTACAGAGCA 60.081 57.895 0.00 0.00 0.00 4.26
1167 1798 1.081376 ACGACGCACTACAGAGCAC 60.081 57.895 0.00 0.00 0.00 4.40
1168 1799 1.081442 CGACGCACTACAGAGCACA 60.081 57.895 0.00 0.00 0.00 4.57
1169 1800 0.663269 CGACGCACTACAGAGCACAA 60.663 55.000 0.00 0.00 0.00 3.33
1170 1801 0.784778 GACGCACTACAGAGCACAAC 59.215 55.000 0.00 0.00 0.00 3.32
1171 1802 0.104120 ACGCACTACAGAGCACAACA 59.896 50.000 0.00 0.00 0.00 3.33
1172 1803 0.508641 CGCACTACAGAGCACAACAC 59.491 55.000 0.00 0.00 0.00 3.32
1173 1804 1.581934 GCACTACAGAGCACAACACA 58.418 50.000 0.00 0.00 0.00 3.72
1174 1805 1.261619 GCACTACAGAGCACAACACAC 59.738 52.381 0.00 0.00 0.00 3.82
1179 1810 0.809636 CAGAGCACAACACACGACCA 60.810 55.000 0.00 0.00 0.00 4.02
1219 1869 0.507785 GAGCGAGATATCGTCGTCGT 59.492 55.000 11.90 9.48 39.69 4.34
1686 2513 3.905678 ATCTCCTTCCTCGCCGCG 61.906 66.667 6.39 6.39 0.00 6.46
1710 2537 1.667595 TCCTCATCATCACCACCCAA 58.332 50.000 0.00 0.00 0.00 4.12
1715 2542 3.181329 TCATCATCACCACCCAAGTACT 58.819 45.455 0.00 0.00 0.00 2.73
1717 2544 1.906574 TCATCACCACCCAAGTACTCC 59.093 52.381 0.00 0.00 0.00 3.85
1719 2546 0.192566 TCACCACCCAAGTACTCCCT 59.807 55.000 0.00 0.00 0.00 4.20
1723 2550 0.903454 CACCCAAGTACTCCCTCCGT 60.903 60.000 0.00 0.00 0.00 4.69
1727 2554 1.831736 CCAAGTACTCCCTCCGTTCAT 59.168 52.381 0.00 0.00 0.00 2.57
1735 2562 8.716674 AGTACTCCCTCCGTTCATAAATATAA 57.283 34.615 0.00 0.00 0.00 0.98
1742 2676 9.284968 CCCTCCGTTCATAAATATAAGATGTTT 57.715 33.333 0.00 0.00 0.00 2.83
1754 2688 7.751768 ATATAAGATGTTTTAGCTTCTGGCC 57.248 36.000 0.00 0.00 43.05 5.36
1755 2689 3.439857 AGATGTTTTAGCTTCTGGCCA 57.560 42.857 4.71 4.71 43.05 5.36
1759 2693 3.230134 TGTTTTAGCTTCTGGCCACATT 58.770 40.909 0.00 0.00 43.05 2.71
1765 2699 0.883833 CTTCTGGCCACATTCCACAC 59.116 55.000 0.00 0.00 0.00 3.82
1767 2701 0.405198 TCTGGCCACATTCCACACAT 59.595 50.000 0.00 0.00 0.00 3.21
1784 2729 9.764363 TTCCACACATATCAAATGTATCTAGAC 57.236 33.333 0.00 0.00 0.00 2.59
1785 2730 8.923270 TCCACACATATCAAATGTATCTAGACA 58.077 33.333 0.00 0.00 0.00 3.41
1786 2731 9.716531 CCACACATATCAAATGTATCTAGACAT 57.283 33.333 0.00 0.00 41.92 3.06
1801 5182 5.231265 CTAGACATGTTCTAGCGTGTACA 57.769 43.478 15.04 0.00 45.93 2.90
1807 5188 5.874810 ACATGTTCTAGCGTGTACATTCATT 59.125 36.000 0.00 0.00 36.89 2.57
1814 5196 8.710835 TCTAGCGTGTACATTCATTCATTTTA 57.289 30.769 0.00 0.00 0.00 1.52
1815 5197 8.817100 TCTAGCGTGTACATTCATTCATTTTAG 58.183 33.333 0.00 0.00 0.00 1.85
1816 5198 7.377766 AGCGTGTACATTCATTCATTTTAGT 57.622 32.000 0.00 0.00 0.00 2.24
1838 5223 7.423844 AGTATGAATCTAGACAACATGTGGA 57.576 36.000 7.39 0.00 0.00 4.02
1839 5224 7.851228 AGTATGAATCTAGACAACATGTGGAA 58.149 34.615 7.39 0.00 0.00 3.53
1881 6347 3.303881 AAAAACGGAGGGAGTACGTAC 57.696 47.619 18.10 18.10 40.31 3.67
1882 6348 1.177401 AAACGGAGGGAGTACGTACC 58.823 55.000 21.80 13.02 40.31 3.34
1883 6349 0.329596 AACGGAGGGAGTACGTACCT 59.670 55.000 21.80 12.39 40.31 3.08
1884 6350 0.329596 ACGGAGGGAGTACGTACCTT 59.670 55.000 21.80 4.51 39.30 3.50
1885 6351 0.737219 CGGAGGGAGTACGTACCTTG 59.263 60.000 21.80 5.93 34.02 3.61
1886 6352 1.844687 GGAGGGAGTACGTACCTTGT 58.155 55.000 21.80 3.31 34.02 3.16
1888 6354 2.165234 GGAGGGAGTACGTACCTTGTTC 59.835 54.545 21.80 12.13 34.02 3.18
1889 6355 3.087781 GAGGGAGTACGTACCTTGTTCT 58.912 50.000 21.80 10.89 34.02 3.01
1890 6356 3.087781 AGGGAGTACGTACCTTGTTCTC 58.912 50.000 21.80 12.33 34.23 2.87
1891 6357 3.087781 GGGAGTACGTACCTTGTTCTCT 58.912 50.000 21.80 0.00 35.05 3.10
1892 6358 3.128415 GGGAGTACGTACCTTGTTCTCTC 59.872 52.174 21.80 7.49 35.05 3.20
1894 6360 2.746362 AGTACGTACCTTGTTCTCTCCG 59.254 50.000 21.80 0.00 0.00 4.63
1897 6363 2.163815 ACGTACCTTGTTCTCTCCGATG 59.836 50.000 0.00 0.00 0.00 3.84
1898 6364 2.422479 CGTACCTTGTTCTCTCCGATGA 59.578 50.000 0.00 0.00 0.00 2.92
1899 6365 3.066900 CGTACCTTGTTCTCTCCGATGAT 59.933 47.826 0.00 0.00 0.00 2.45
1900 6366 3.533606 ACCTTGTTCTCTCCGATGATG 57.466 47.619 0.00 0.00 0.00 3.07
1902 6368 3.515502 ACCTTGTTCTCTCCGATGATGAA 59.484 43.478 0.00 0.00 0.00 2.57
1903 6369 4.020218 ACCTTGTTCTCTCCGATGATGAAA 60.020 41.667 0.00 0.00 0.00 2.69
1904 6370 4.937620 CCTTGTTCTCTCCGATGATGAAAA 59.062 41.667 0.00 0.00 0.00 2.29
1905 6371 5.064452 CCTTGTTCTCTCCGATGATGAAAAG 59.936 44.000 0.00 0.00 0.00 2.27
1906 6372 5.405935 TGTTCTCTCCGATGATGAAAAGA 57.594 39.130 0.00 0.00 0.00 2.52
1907 6373 5.793817 TGTTCTCTCCGATGATGAAAAGAA 58.206 37.500 0.00 0.00 0.00 2.52
1908 6374 6.230472 TGTTCTCTCCGATGATGAAAAGAAA 58.770 36.000 0.00 0.00 0.00 2.52
1909 6375 6.147821 TGTTCTCTCCGATGATGAAAAGAAAC 59.852 38.462 0.00 0.00 0.00 2.78
1910 6376 6.042638 TCTCTCCGATGATGAAAAGAAACT 57.957 37.500 0.00 0.00 0.00 2.66
1911 6377 5.871524 TCTCTCCGATGATGAAAAGAAACTG 59.128 40.000 0.00 0.00 0.00 3.16
1912 6378 5.793817 TCTCCGATGATGAAAAGAAACTGA 58.206 37.500 0.00 0.00 0.00 3.41
1913 6379 6.230472 TCTCCGATGATGAAAAGAAACTGAA 58.770 36.000 0.00 0.00 0.00 3.02
1914 6380 6.147821 TCTCCGATGATGAAAAGAAACTGAAC 59.852 38.462 0.00 0.00 0.00 3.18
1915 6381 5.181245 TCCGATGATGAAAAGAAACTGAACC 59.819 40.000 0.00 0.00 0.00 3.62
1916 6382 5.182001 CCGATGATGAAAAGAAACTGAACCT 59.818 40.000 0.00 0.00 0.00 3.50
1917 6383 6.082338 CGATGATGAAAAGAAACTGAACCTG 58.918 40.000 0.00 0.00 0.00 4.00
1918 6384 5.772825 TGATGAAAAGAAACTGAACCTGG 57.227 39.130 0.00 0.00 0.00 4.45
1919 6385 5.200483 TGATGAAAAGAAACTGAACCTGGT 58.800 37.500 0.00 0.00 0.00 4.00
1920 6386 5.299279 TGATGAAAAGAAACTGAACCTGGTC 59.701 40.000 0.00 0.00 0.00 4.02
1921 6387 3.951680 TGAAAAGAAACTGAACCTGGTCC 59.048 43.478 0.00 0.00 0.00 4.46
1922 6388 3.953542 AAAGAAACTGAACCTGGTCCT 57.046 42.857 0.00 0.00 0.00 3.85
1923 6389 3.953542 AAGAAACTGAACCTGGTCCTT 57.046 42.857 0.00 0.00 0.00 3.36
1924 6390 3.214696 AGAAACTGAACCTGGTCCTTG 57.785 47.619 0.00 0.00 0.00 3.61
1925 6391 2.777692 AGAAACTGAACCTGGTCCTTGA 59.222 45.455 0.00 0.00 0.00 3.02
1926 6392 2.938956 AACTGAACCTGGTCCTTGAG 57.061 50.000 0.00 0.00 0.00 3.02
1927 6393 1.059913 ACTGAACCTGGTCCTTGAGG 58.940 55.000 0.00 0.00 35.26 3.86
1928 6394 1.352083 CTGAACCTGGTCCTTGAGGA 58.648 55.000 0.00 0.00 43.08 3.71
1929 6395 1.277557 CTGAACCTGGTCCTTGAGGAG 59.722 57.143 0.00 0.00 46.49 3.69
1930 6396 0.615850 GAACCTGGTCCTTGAGGAGG 59.384 60.000 0.00 1.23 46.49 4.30
1931 6397 0.842467 AACCTGGTCCTTGAGGAGGG 60.842 60.000 0.00 6.11 46.49 4.30
1932 6398 1.229658 CCTGGTCCTTGAGGAGGGT 60.230 63.158 0.00 0.00 46.49 4.34
1933 6399 1.557269 CCTGGTCCTTGAGGAGGGTG 61.557 65.000 0.00 0.00 46.49 4.61
1934 6400 2.190488 CTGGTCCTTGAGGAGGGTGC 62.190 65.000 0.00 0.00 46.49 5.01
1935 6401 2.224159 GGTCCTTGAGGAGGGTGCA 61.224 63.158 0.00 0.00 46.49 4.57
1936 6402 1.298014 GTCCTTGAGGAGGGTGCAG 59.702 63.158 0.00 0.00 46.49 4.41
1937 6403 1.158466 TCCTTGAGGAGGGTGCAGA 59.842 57.895 0.00 0.00 46.31 4.26
1938 6404 0.906756 TCCTTGAGGAGGGTGCAGAG 60.907 60.000 0.00 0.00 46.31 3.35
1939 6405 1.601171 CTTGAGGAGGGTGCAGAGG 59.399 63.158 0.00 0.00 0.00 3.69
1940 6406 1.908340 CTTGAGGAGGGTGCAGAGGG 61.908 65.000 0.00 0.00 0.00 4.30
1941 6407 3.086600 GAGGAGGGTGCAGAGGGG 61.087 72.222 0.00 0.00 0.00 4.79
1942 6408 3.615811 AGGAGGGTGCAGAGGGGA 61.616 66.667 0.00 0.00 0.00 4.81
1943 6409 3.403558 GGAGGGTGCAGAGGGGAC 61.404 72.222 0.00 0.00 37.06 4.46
1944 6410 2.607750 GAGGGTGCAGAGGGGACA 60.608 66.667 0.00 0.00 40.06 4.02
1945 6411 1.997874 GAGGGTGCAGAGGGGACAT 60.998 63.158 0.00 0.00 40.06 3.06
1946 6412 1.542375 AGGGTGCAGAGGGGACATT 60.542 57.895 0.00 0.00 40.06 2.71
1947 6413 1.142688 AGGGTGCAGAGGGGACATTT 61.143 55.000 0.00 0.00 40.06 2.32
1948 6414 0.251787 GGGTGCAGAGGGGACATTTT 60.252 55.000 0.00 0.00 40.06 1.82
1949 6415 1.177401 GGTGCAGAGGGGACATTTTC 58.823 55.000 0.00 0.00 40.06 2.29
1950 6416 1.272147 GGTGCAGAGGGGACATTTTCT 60.272 52.381 0.00 0.00 40.06 2.52
1951 6417 1.815003 GTGCAGAGGGGACATTTTCTG 59.185 52.381 0.00 0.00 39.94 3.02
1952 6418 1.704628 TGCAGAGGGGACATTTTCTGA 59.295 47.619 4.65 0.00 39.46 3.27
1953 6419 2.309755 TGCAGAGGGGACATTTTCTGAT 59.690 45.455 4.65 0.00 39.46 2.90
1969 6435 7.549615 TTTTCTGATGACTAGATGATTGCAG 57.450 36.000 0.00 0.00 0.00 4.41
1971 6437 4.100498 TCTGATGACTAGATGATTGCAGCA 59.900 41.667 0.00 0.00 31.43 4.41
1986 6452 4.039042 GCAGGGGGCATTCACATT 57.961 55.556 0.00 0.00 43.97 2.71
2007 6473 6.668283 ACATTCTAGTAGGGTAACATGTGAGT 59.332 38.462 0.00 0.00 39.74 3.41
2008 6474 7.180408 ACATTCTAGTAGGGTAACATGTGAGTT 59.820 37.037 0.00 0.00 39.74 3.01
2010 6476 6.931838 TCTAGTAGGGTAACATGTGAGTTTG 58.068 40.000 0.00 0.00 39.74 2.93
2015 6481 2.030274 GGTAACATGTGAGTTTGTGCCC 60.030 50.000 0.00 0.00 33.07 5.36
2057 6529 8.567948 TGTAAAAGAAGAAGGTTCTATTTGCTG 58.432 33.333 0.00 0.00 36.28 4.41
2060 6532 6.365970 AGAAGAAGGTTCTATTTGCTGAGA 57.634 37.500 0.00 0.00 36.28 3.27
2080 6552 7.041372 GCTGAGAACTTATTTGGTAAACACTCA 60.041 37.037 0.00 0.00 0.00 3.41
2087 6559 8.349983 ACTTATTTGGTAAACACTCATTGACAC 58.650 33.333 0.00 0.00 0.00 3.67
2088 6560 6.707440 ATTTGGTAAACACTCATTGACACA 57.293 33.333 0.00 0.00 0.00 3.72
2113 7531 1.216710 GGAGGTGCTTCAGGAGACG 59.783 63.158 0.00 0.00 0.00 4.18
2122 7540 2.028385 GCTTCAGGAGACGGTTTTAGGA 60.028 50.000 0.00 0.00 0.00 2.94
2123 7541 3.556423 GCTTCAGGAGACGGTTTTAGGAA 60.556 47.826 0.00 0.00 0.00 3.36
2169 7587 9.294614 AGCAGAGATAAGATGAAAAGAAAAACT 57.705 29.630 0.00 0.00 0.00 2.66
2211 7706 1.215423 ACAAGGCCCCATCTTATGTCC 59.785 52.381 0.00 0.00 0.00 4.02
2228 7723 3.481453 TGTCCATTGACATTCGTTTCCA 58.519 40.909 0.00 0.00 46.40 3.53
2229 7724 3.885901 TGTCCATTGACATTCGTTTCCAA 59.114 39.130 0.00 0.00 46.40 3.53
2230 7725 4.522405 TGTCCATTGACATTCGTTTCCAAT 59.478 37.500 0.00 0.00 46.40 3.16
2232 7727 6.207614 TGTCCATTGACATTCGTTTCCAATTA 59.792 34.615 0.00 0.00 46.40 1.40
2236 7731 7.922278 CCATTGACATTCGTTTCCAATTATGAT 59.078 33.333 0.00 0.00 0.00 2.45
2263 7863 6.451064 AAAAAGACACTCGATTTCCAACTT 57.549 33.333 0.00 0.00 0.00 2.66
2268 7868 5.007724 AGACACTCGATTTCCAACTTCAAAC 59.992 40.000 0.00 0.00 0.00 2.93
2269 7869 4.211389 CACTCGATTTCCAACTTCAAACG 58.789 43.478 0.00 0.00 0.00 3.60
2271 7871 4.573201 ACTCGATTTCCAACTTCAAACGAA 59.427 37.500 0.00 0.00 0.00 3.85
2297 7897 3.354467 ACTTACACTCTTACTCCCTCCG 58.646 50.000 0.00 0.00 0.00 4.63
2298 7898 3.245193 ACTTACACTCTTACTCCCTCCGT 60.245 47.826 0.00 0.00 0.00 4.69
2299 7899 1.836802 ACACTCTTACTCCCTCCGTC 58.163 55.000 0.00 0.00 0.00 4.79
2301 7901 1.473278 CACTCTTACTCCCTCCGTCAC 59.527 57.143 0.00 0.00 0.00 3.67
2302 7902 0.733729 CTCTTACTCCCTCCGTCACG 59.266 60.000 0.00 0.00 0.00 4.35
2303 7903 0.037303 TCTTACTCCCTCCGTCACGT 59.963 55.000 0.00 0.00 0.00 4.49
2305 7905 2.086869 CTTACTCCCTCCGTCACGTAA 58.913 52.381 0.00 0.00 0.00 3.18
2307 7907 2.425143 ACTCCCTCCGTCACGTAATA 57.575 50.000 0.00 0.00 0.00 0.98
2308 7908 2.941480 ACTCCCTCCGTCACGTAATAT 58.059 47.619 0.00 0.00 0.00 1.28
2309 7909 4.090761 ACTCCCTCCGTCACGTAATATA 57.909 45.455 0.00 0.00 0.00 0.86
2311 7911 4.518211 ACTCCCTCCGTCACGTAATATAAG 59.482 45.833 0.00 0.00 0.00 1.73
2312 7912 4.717877 TCCCTCCGTCACGTAATATAAGA 58.282 43.478 0.00 0.00 0.00 2.10
2314 7914 5.009010 TCCCTCCGTCACGTAATATAAGAAC 59.991 44.000 0.00 0.00 0.00 3.01
2319 8075 5.516339 CCGTCACGTAATATAAGAACGGTTT 59.484 40.000 0.00 0.00 40.81 3.27
2325 8081 7.437267 CACGTAATATAAGAACGGTTTGGATCT 59.563 37.037 0.00 0.00 40.81 2.75
2330 8086 0.608035 GAACGGTTTGGATCTGCCCA 60.608 55.000 0.00 0.00 34.97 5.36
2331 8087 0.039618 AACGGTTTGGATCTGCCCAT 59.960 50.000 0.00 0.00 35.87 4.00
2333 8089 1.185315 CGGTTTGGATCTGCCCATTT 58.815 50.000 0.00 0.00 35.87 2.32
2334 8090 1.135024 CGGTTTGGATCTGCCCATTTG 60.135 52.381 0.00 0.00 35.87 2.32
2335 8091 1.207811 GGTTTGGATCTGCCCATTTGG 59.792 52.381 0.00 0.00 35.87 3.28
2336 8092 2.178580 GTTTGGATCTGCCCATTTGGA 58.821 47.619 0.00 0.00 35.87 3.53
2339 8095 1.854939 TGGATCTGCCCATTTGGATCT 59.145 47.619 0.00 0.00 37.39 2.75
2341 8097 3.303049 GGATCTGCCCATTTGGATCTTT 58.697 45.455 0.00 0.00 37.39 2.52
2342 8098 3.708121 GGATCTGCCCATTTGGATCTTTT 59.292 43.478 0.00 0.00 37.39 2.27
2343 8099 4.162888 GGATCTGCCCATTTGGATCTTTTT 59.837 41.667 0.00 0.00 37.39 1.94
2345 8101 6.042437 GGATCTGCCCATTTGGATCTTTTTAT 59.958 38.462 0.00 0.00 37.39 1.40
2346 8102 7.233348 GGATCTGCCCATTTGGATCTTTTTATA 59.767 37.037 0.00 0.00 37.39 0.98
2348 8104 8.551682 TCTGCCCATTTGGATCTTTTTATATT 57.448 30.769 0.00 0.00 37.39 1.28
2349 8105 8.423349 TCTGCCCATTTGGATCTTTTTATATTG 58.577 33.333 0.00 0.00 37.39 1.90
2351 8107 7.127032 TGCCCATTTGGATCTTTTTATATTGGT 59.873 33.333 0.00 0.00 37.39 3.67
2352 8108 8.646900 GCCCATTTGGATCTTTTTATATTGGTA 58.353 33.333 0.00 0.00 37.39 3.25
2395 8354 3.926616 TCGCTTCCTTCTCTAAACCAAG 58.073 45.455 0.00 0.00 0.00 3.61
2399 8358 4.646572 CTTCCTTCTCTAAACCAAGCTGT 58.353 43.478 0.00 0.00 0.00 4.40
2400 8359 4.008074 TCCTTCTCTAAACCAAGCTGTG 57.992 45.455 0.00 0.00 0.00 3.66
2439 8639 1.866853 CTGGGCGCCCTTGAAGTTTC 61.867 60.000 43.34 15.94 36.94 2.78
2453 8653 7.362401 CCCTTGAAGTTTCTCTTATGTCCATTG 60.362 40.741 0.00 0.00 36.40 2.82
2456 8656 7.223584 TGAAGTTTCTCTTATGTCCATTGACA 58.776 34.615 1.57 1.57 44.91 3.58
2457 8657 7.173218 TGAAGTTTCTCTTATGTCCATTGACAC 59.827 37.037 1.02 0.00 44.25 3.67
2458 8658 7.389053 GAAGTTTCTCTTATGTCCATTGACACT 59.611 37.037 1.02 0.00 44.25 3.55
2466 8666 2.158885 TGTCCATTGACACTCGTTTCCA 60.159 45.455 0.00 0.00 46.40 3.53
2467 8667 2.875933 GTCCATTGACACTCGTTTCCAA 59.124 45.455 0.00 0.00 41.37 3.53
2471 8671 5.943416 TCCATTGACACTCGTTTCCAATTAT 59.057 36.000 0.00 0.00 0.00 1.28
2472 8672 6.432783 TCCATTGACACTCGTTTCCAATTATT 59.567 34.615 0.00 0.00 0.00 1.40
2473 8673 6.747280 CCATTGACACTCGTTTCCAATTATTC 59.253 38.462 0.00 0.00 0.00 1.75
2480 8741 5.123979 ACTCGTTTCCAATTATTCAGGCTTC 59.876 40.000 0.00 0.00 0.00 3.86
2587 8931 2.992689 TTCCCACGCGACCTAGCA 60.993 61.111 15.93 0.00 36.85 3.49
2588 8932 2.890847 CTTCCCACGCGACCTAGCAG 62.891 65.000 15.93 0.00 36.85 4.24
2590 8934 4.135153 CCACGCGACCTAGCAGCT 62.135 66.667 15.93 0.00 36.85 4.24
2591 8935 2.580867 CACGCGACCTAGCAGCTC 60.581 66.667 15.93 0.00 36.85 4.09
2594 8938 2.765356 CGCGACCTAGCAGCTCTCA 61.765 63.158 0.00 0.00 36.85 3.27
2595 8939 1.739049 GCGACCTAGCAGCTCTCAT 59.261 57.895 0.00 0.00 37.05 2.90
2598 8942 0.313672 GACCTAGCAGCTCTCATCCG 59.686 60.000 0.00 0.00 0.00 4.18
2601 8945 2.433231 CTAGCAGCTCTCATCCGCCC 62.433 65.000 0.00 0.00 0.00 6.13
2783 9491 2.648059 GCTGATGCCAGGTTCTACATT 58.352 47.619 0.00 0.00 40.72 2.71
2803 9511 4.447989 GCTCGCCTGCAGCTCTGA 62.448 66.667 8.66 1.70 40.39 3.27
2827 9535 5.219739 ACATGGACATGGTAATCTCTACCT 58.780 41.667 15.94 0.00 42.91 3.08
2964 9704 3.484886 GCTGCTTTCACTGAAATAGAGCG 60.485 47.826 15.18 8.96 30.85 5.03
2971 9711 0.574454 CTGAAATAGAGCGCTGCGTC 59.426 55.000 18.48 18.25 0.00 5.19
2982 9722 4.803426 CTGCGTCTCCTGGCGACC 62.803 72.222 11.01 5.06 0.00 4.79
2993 9733 2.121116 CTGGCGACCAGTTAGTATCG 57.879 55.000 15.27 0.00 45.82 2.92
2994 9734 1.404391 CTGGCGACCAGTTAGTATCGT 59.596 52.381 15.27 0.00 45.82 3.73
2995 9735 1.402968 TGGCGACCAGTTAGTATCGTC 59.597 52.381 0.00 0.00 39.57 4.20
3021 9856 3.482436 CAAGTGGCAACCTAACCAACTA 58.518 45.455 0.00 0.00 37.79 2.24
3040 9875 6.295916 CCAACTATTCTCTGGTCCTAGTGTTT 60.296 42.308 0.00 0.00 0.00 2.83
3041 9876 6.532988 ACTATTCTCTGGTCCTAGTGTTTC 57.467 41.667 0.00 0.00 0.00 2.78
3053 10136 7.390440 TGGTCCTAGTGTTTCATTTCATACAAG 59.610 37.037 0.00 0.00 0.00 3.16
3065 10148 6.543465 TCATTTCATACAAGGATGGCTTAGTG 59.457 38.462 0.00 0.00 0.00 2.74
3124 11074 3.260380 TGGTTGCCCTTGATAAAATGGTG 59.740 43.478 0.00 0.00 0.00 4.17
3125 11075 3.260632 GGTTGCCCTTGATAAAATGGTGT 59.739 43.478 0.00 0.00 0.00 4.16
3141 11091 2.260154 TGTCATGGTGCGGTGCTTG 61.260 57.895 0.00 0.00 0.00 4.01
3159 11111 0.250467 TGCAGTTCTGGGCTCAACTC 60.250 55.000 0.00 0.00 30.06 3.01
3166 11118 1.461268 TGGGCTCAACTCACCAGGA 60.461 57.895 0.00 0.00 0.00 3.86
3191 11143 3.195610 CCGCTGGATATAATGTAGCCTCA 59.804 47.826 0.00 0.00 0.00 3.86
3192 11144 4.428209 CGCTGGATATAATGTAGCCTCAG 58.572 47.826 0.00 0.00 0.00 3.35
3220 11184 4.576053 TCAATGGAAAAGGCATATCGACAG 59.424 41.667 0.00 0.00 0.00 3.51
3240 11204 3.681897 CAGAATACATCAGGCCGCTTATC 59.318 47.826 0.00 0.00 0.00 1.75
3285 11259 1.522668 TGCAAGACCCAGAACATTCG 58.477 50.000 0.00 0.00 0.00 3.34
3334 11308 7.645340 GGCATGCTAATGTAATGTTTCTACTTG 59.355 37.037 18.92 0.00 36.08 3.16
3355 11329 7.584987 ACTTGTATTTGTATGTGCTCAGTTTC 58.415 34.615 0.00 0.00 0.00 2.78
3391 11399 4.687483 TGATGAATGATGATCGGTGAATCG 59.313 41.667 0.00 0.00 0.00 3.34
3407 11416 0.650512 ATCGCTTCGTTTACATGGCG 59.349 50.000 0.00 0.00 43.22 5.69
3531 11573 3.615509 TTACCGGGGGCTCAAAGCG 62.616 63.158 6.32 0.00 43.62 4.68
3781 11823 0.673644 CCTTCTTCGCCACCGTCAAT 60.674 55.000 0.00 0.00 35.54 2.57
3808 11850 1.654105 GTCGGCTACGTCTTGTTCATG 59.346 52.381 0.00 0.00 41.85 3.07
4075 12117 3.129988 GCCTCTTCTACGGCAAGTAAGTA 59.870 47.826 0.00 0.00 45.59 2.24
4085 12127 4.451435 ACGGCAAGTAAGTAAAGCTTCTTC 59.549 41.667 0.00 0.00 38.57 2.87
4086 12128 4.691216 CGGCAAGTAAGTAAAGCTTCTTCT 59.309 41.667 0.00 0.00 38.57 2.85
4087 12129 5.179555 CGGCAAGTAAGTAAAGCTTCTTCTT 59.820 40.000 0.00 7.61 38.57 2.52
4088 12130 6.293462 CGGCAAGTAAGTAAAGCTTCTTCTTT 60.293 38.462 0.00 0.00 38.57 2.52
4089 12131 7.426410 GGCAAGTAAGTAAAGCTTCTTCTTTT 58.574 34.615 0.00 0.00 38.57 2.27
4090 12132 7.921214 GGCAAGTAAGTAAAGCTTCTTCTTTTT 59.079 33.333 0.00 1.73 38.57 1.94
4113 12155 7.873719 TTTGAGAAAGATAAACCAAGTCACA 57.126 32.000 0.00 0.00 0.00 3.58
4114 12156 6.861065 TGAGAAAGATAAACCAAGTCACAC 57.139 37.500 0.00 0.00 0.00 3.82
4115 12157 6.353323 TGAGAAAGATAAACCAAGTCACACA 58.647 36.000 0.00 0.00 0.00 3.72
4116 12158 6.826231 TGAGAAAGATAAACCAAGTCACACAA 59.174 34.615 0.00 0.00 0.00 3.33
4117 12159 7.338196 TGAGAAAGATAAACCAAGTCACACAAA 59.662 33.333 0.00 0.00 0.00 2.83
4118 12160 8.237811 AGAAAGATAAACCAAGTCACACAAAT 57.762 30.769 0.00 0.00 0.00 2.32
4119 12161 8.695456 AGAAAGATAAACCAAGTCACACAAATT 58.305 29.630 0.00 0.00 0.00 1.82
4120 12162 9.313118 GAAAGATAAACCAAGTCACACAAATTT 57.687 29.630 0.00 0.00 0.00 1.82
4121 12163 8.647143 AAGATAAACCAAGTCACACAAATTTG 57.353 30.769 16.67 16.67 0.00 2.32
4122 12164 7.209475 AGATAAACCAAGTCACACAAATTTGG 58.791 34.615 21.74 12.94 43.02 3.28
4123 12165 5.413309 AAACCAAGTCACACAAATTTGGA 57.587 34.783 21.74 7.27 40.52 3.53
4124 12166 4.654091 ACCAAGTCACACAAATTTGGAG 57.346 40.909 21.74 15.55 40.52 3.86
4125 12167 3.181476 ACCAAGTCACACAAATTTGGAGC 60.181 43.478 21.74 7.56 40.52 4.70
4126 12168 3.068590 CCAAGTCACACAAATTTGGAGCT 59.931 43.478 21.74 9.50 40.52 4.09
4127 12169 4.293415 CAAGTCACACAAATTTGGAGCTC 58.707 43.478 21.74 4.71 0.00 4.09
4128 12170 2.549754 AGTCACACAAATTTGGAGCTCG 59.450 45.455 21.74 7.06 0.00 5.03
4129 12171 2.548057 GTCACACAAATTTGGAGCTCGA 59.452 45.455 21.74 0.00 0.00 4.04
4130 12172 3.003275 GTCACACAAATTTGGAGCTCGAA 59.997 43.478 21.74 7.12 0.00 3.71
4131 12173 3.250762 TCACACAAATTTGGAGCTCGAAG 59.749 43.478 21.74 2.87 0.00 3.79
4132 12174 2.030805 ACACAAATTTGGAGCTCGAAGC 60.031 45.455 21.74 0.00 42.84 3.86
4133 12175 1.541588 ACAAATTTGGAGCTCGAAGCC 59.458 47.619 21.74 0.00 43.77 4.35
4134 12176 1.541147 CAAATTTGGAGCTCGAAGCCA 59.459 47.619 11.19 0.00 43.77 4.75
4135 12177 1.909700 AATTTGGAGCTCGAAGCCAA 58.090 45.000 11.19 5.51 43.77 4.52
4136 12178 3.412722 TTTGGAGCTCGAAGCCAAA 57.587 47.368 17.24 17.24 46.26 3.28
4137 12179 1.686355 TTTGGAGCTCGAAGCCAAAA 58.314 45.000 18.30 8.43 45.68 2.44
4138 12180 1.686355 TTGGAGCTCGAAGCCAAAAA 58.314 45.000 7.12 0.00 43.77 1.94
4212 12254 9.129209 GAAAAGAGATTTCAACCTTATTTTCGG 57.871 33.333 0.00 0.00 45.58 4.30
4213 12255 7.996098 AAGAGATTTCAACCTTATTTTCGGA 57.004 32.000 0.00 0.00 0.00 4.55
4214 12256 8.581253 AAGAGATTTCAACCTTATTTTCGGAT 57.419 30.769 0.00 0.00 0.00 4.18
4215 12257 9.681062 AAGAGATTTCAACCTTATTTTCGGATA 57.319 29.630 0.00 0.00 0.00 2.59
4216 12258 9.853177 AGAGATTTCAACCTTATTTTCGGATAT 57.147 29.630 0.00 0.00 0.00 1.63
4218 12260 9.627123 AGATTTCAACCTTATTTTCGGATATCA 57.373 29.630 4.83 0.00 0.00 2.15
4242 12284 8.668353 TCATTATGAGAAGATTTACACACAAGC 58.332 33.333 0.00 0.00 0.00 4.01
4243 12285 5.886960 ATGAGAAGATTTACACACAAGCC 57.113 39.130 0.00 0.00 0.00 4.35
4244 12286 4.072131 TGAGAAGATTTACACACAAGCCC 58.928 43.478 0.00 0.00 0.00 5.19
4245 12287 4.072131 GAGAAGATTTACACACAAGCCCA 58.928 43.478 0.00 0.00 0.00 5.36
4246 12288 4.469657 AGAAGATTTACACACAAGCCCAA 58.530 39.130 0.00 0.00 0.00 4.12
4247 12289 5.079643 AGAAGATTTACACACAAGCCCAAT 58.920 37.500 0.00 0.00 0.00 3.16
4248 12290 6.245408 AGAAGATTTACACACAAGCCCAATA 58.755 36.000 0.00 0.00 0.00 1.90
4249 12291 5.897377 AGATTTACACACAAGCCCAATAC 57.103 39.130 0.00 0.00 0.00 1.89
4250 12292 5.321102 AGATTTACACACAAGCCCAATACA 58.679 37.500 0.00 0.00 0.00 2.29
4251 12293 5.951747 AGATTTACACACAAGCCCAATACAT 59.048 36.000 0.00 0.00 0.00 2.29
4252 12294 5.384063 TTTACACACAAGCCCAATACATG 57.616 39.130 0.00 0.00 0.00 3.21
4253 12295 2.875296 ACACACAAGCCCAATACATGT 58.125 42.857 2.69 2.69 0.00 3.21
4254 12296 4.027674 ACACACAAGCCCAATACATGTA 57.972 40.909 8.27 8.27 0.00 2.29
4255 12297 4.599041 ACACACAAGCCCAATACATGTAT 58.401 39.130 12.75 12.75 0.00 2.29
4256 12298 5.750524 ACACACAAGCCCAATACATGTATA 58.249 37.500 18.56 0.00 0.00 1.47
4363 12428 5.333299 TGCCGCTTCACTAAAATACTCTA 57.667 39.130 0.00 0.00 0.00 2.43
4379 12444 2.008168 CTATCTCTCTGTGCGCGCG 61.008 63.158 28.44 28.44 0.00 6.86
4413 12478 5.123502 GGCATTCCTCATAGCATCAGTTATG 59.876 44.000 0.00 0.00 39.47 1.90
4546 12617 7.132863 GTGTCAATTACAGTGTCTTTTTCTCC 58.867 38.462 0.00 0.00 39.29 3.71
4578 12649 6.283694 TGTTCATCCCTTCAGAAATAGATCG 58.716 40.000 0.00 0.00 0.00 3.69
4776 12849 3.303461 CGACGGTGCATTCACAAAGTAAA 60.303 43.478 0.00 0.00 44.87 2.01
4777 12850 4.612712 CGACGGTGCATTCACAAAGTAAAT 60.613 41.667 0.00 0.00 44.87 1.40
4783 12856 6.301108 GTGCATTCACAAAGTAAATTGCATG 58.699 36.000 0.00 0.00 42.66 4.06
4793 12885 8.526147 ACAAAGTAAATTGCATGCTAAATCTCT 58.474 29.630 20.33 6.59 33.52 3.10
4797 12889 8.964772 AGTAAATTGCATGCTAAATCTCTTCTT 58.035 29.630 20.33 4.15 0.00 2.52
4887 12990 1.483827 TCCTTCAGATTGCAGCTCGAT 59.516 47.619 0.00 0.00 0.00 3.59
4889 12992 2.547826 CTTCAGATTGCAGCTCGATCA 58.452 47.619 12.91 0.00 37.93 2.92
4988 13109 1.140052 TGCCTATAACGTGGGACCATG 59.860 52.381 8.97 8.97 38.78 3.66
5070 13191 3.846588 TCTCCTTCAAATTCCAGGCTAGT 59.153 43.478 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 1.069765 AAGACTCCGCGCCATATGG 59.930 57.895 18.07 18.07 38.53 2.74
46 47 5.122512 TCTGAAGTTCTTACAAGACTCCG 57.877 43.478 4.17 0.00 34.13 4.63
215 222 4.573900 ACAAATCAAACCAAACAGTTGCA 58.426 34.783 0.00 0.00 33.01 4.08
235 242 6.757237 ACACCAAAAATGCTTCATGATTACA 58.243 32.000 0.00 0.00 0.00 2.41
427 524 1.037493 GGGGGTGTTTTCTTGACCAC 58.963 55.000 0.00 0.00 31.80 4.16
444 541 1.604593 CAAACAGCCACCAGAGGGG 60.605 63.158 0.00 0.00 44.81 4.79
445 542 0.468029 AACAAACAGCCACCAGAGGG 60.468 55.000 0.00 0.00 41.29 4.30
446 543 2.154462 CTAACAAACAGCCACCAGAGG 58.846 52.381 0.00 0.00 0.00 3.69
447 544 2.851195 ACTAACAAACAGCCACCAGAG 58.149 47.619 0.00 0.00 0.00 3.35
448 545 3.389983 AGTACTAACAAACAGCCACCAGA 59.610 43.478 0.00 0.00 0.00 3.86
470 708 3.151710 CCATCCCCGGCTCACGTA 61.152 66.667 0.00 0.00 42.24 3.57
610 848 2.034432 ACATCTAGATCTGTGCTGCTCG 59.966 50.000 5.18 0.00 0.00 5.03
625 863 1.153842 CACCGCACGCTCACATCTA 60.154 57.895 0.00 0.00 0.00 1.98
647 885 1.406069 GGGCTCAGATGCTCTCGAAAA 60.406 52.381 0.00 0.00 0.00 2.29
667 905 3.134458 GGGATATTCGTTTCTGAGCCTG 58.866 50.000 0.00 0.00 0.00 4.85
668 906 3.041946 AGGGATATTCGTTTCTGAGCCT 58.958 45.455 0.00 0.00 0.00 4.58
669 907 3.477210 AGGGATATTCGTTTCTGAGCC 57.523 47.619 0.00 0.00 0.00 4.70
689 927 4.991776 TGACCCAAAATGAACCTCACATA 58.008 39.130 0.00 0.00 0.00 2.29
690 928 3.843422 TGACCCAAAATGAACCTCACAT 58.157 40.909 0.00 0.00 0.00 3.21
691 929 3.304911 TGACCCAAAATGAACCTCACA 57.695 42.857 0.00 0.00 0.00 3.58
692 930 3.550030 CGTTGACCCAAAATGAACCTCAC 60.550 47.826 0.00 0.00 0.00 3.51
693 931 2.621055 CGTTGACCCAAAATGAACCTCA 59.379 45.455 0.00 0.00 0.00 3.86
694 932 2.030274 CCGTTGACCCAAAATGAACCTC 60.030 50.000 0.00 0.00 0.00 3.85
695 933 1.960689 CCGTTGACCCAAAATGAACCT 59.039 47.619 0.00 0.00 0.00 3.50
696 934 1.604438 GCCGTTGACCCAAAATGAACC 60.604 52.381 0.00 0.00 0.00 3.62
697 935 1.604438 GGCCGTTGACCCAAAATGAAC 60.604 52.381 0.00 0.00 0.00 3.18
698 936 0.676736 GGCCGTTGACCCAAAATGAA 59.323 50.000 0.00 0.00 0.00 2.57
699 937 0.468214 TGGCCGTTGACCCAAAATGA 60.468 50.000 0.00 0.00 0.00 2.57
700 938 0.607620 ATGGCCGTTGACCCAAAATG 59.392 50.000 0.00 0.00 34.25 2.32
701 939 0.607620 CATGGCCGTTGACCCAAAAT 59.392 50.000 0.00 0.00 34.25 1.82
702 940 0.757188 ACATGGCCGTTGACCCAAAA 60.757 50.000 12.14 0.00 34.25 2.44
703 941 0.757188 AACATGGCCGTTGACCCAAA 60.757 50.000 12.14 0.00 34.25 3.28
704 942 0.110678 TAACATGGCCGTTGACCCAA 59.889 50.000 12.14 0.00 34.25 4.12
705 943 0.606944 GTAACATGGCCGTTGACCCA 60.607 55.000 12.14 0.00 35.21 4.51
706 944 1.641123 CGTAACATGGCCGTTGACCC 61.641 60.000 12.14 0.00 0.00 4.46
745 983 4.219115 AGGCTGATATATATGGACGGAGG 58.781 47.826 0.00 0.00 0.00 4.30
755 993 9.774413 CAATGAATGCTGATAGGCTGATATATA 57.226 33.333 0.00 0.00 0.00 0.86
756 994 8.491958 TCAATGAATGCTGATAGGCTGATATAT 58.508 33.333 0.00 0.00 0.00 0.86
757 995 7.854337 TCAATGAATGCTGATAGGCTGATATA 58.146 34.615 0.00 0.00 0.00 0.86
863 1102 6.314917 TCTGGAATATACTGCTGGAGTATCA 58.685 40.000 22.67 14.35 43.36 2.15
975 1242 4.645921 GCGGCCAGTTGTGGTTGC 62.646 66.667 2.24 0.00 46.96 4.17
978 1245 1.599797 GTAAGCGGCCAGTTGTGGT 60.600 57.895 2.24 0.00 46.96 4.16
980 1247 1.599518 TGGTAAGCGGCCAGTTGTG 60.600 57.895 2.24 0.00 0.00 3.33
997 1264 3.887868 GGGCATTTAGGGCGCGTG 61.888 66.667 8.43 0.00 34.46 5.34
1028 1295 3.822192 CCTCGATCGTGGCGTCCA 61.822 66.667 22.01 0.00 0.00 4.02
1068 1697 1.396301 GTGACCCTCTCTACGTACACG 59.604 57.143 0.00 0.00 46.33 4.49
1070 1699 2.119801 GGTGACCCTCTCTACGTACA 57.880 55.000 0.00 0.00 0.00 2.90
1084 1713 0.250513 CAGAAGCTGGGTAGGGTGAC 59.749 60.000 0.00 0.00 0.00 3.67
1086 1715 1.078143 GCAGAAGCTGGGTAGGGTG 60.078 63.158 0.00 0.00 37.91 4.61
1099 1730 2.731451 GCGCGTGATTATATGAGCAGAA 59.269 45.455 8.43 0.00 33.36 3.02
1127 1758 3.535962 GAGAGGAGCTGAGGGCCG 61.536 72.222 0.00 0.00 43.05 6.13
1129 1760 3.535962 CGGAGAGGAGCTGAGGGC 61.536 72.222 0.00 0.00 42.19 5.19
1132 1763 2.757508 TGCCGGAGAGGAGCTGAG 60.758 66.667 5.05 0.00 45.00 3.35
1136 1767 4.500116 GTCGTGCCGGAGAGGAGC 62.500 72.222 5.05 0.00 45.00 4.70
1137 1768 4.180946 CGTCGTGCCGGAGAGGAG 62.181 72.222 5.05 0.00 45.00 3.69
1142 1773 4.111016 TAGTGCGTCGTGCCGGAG 62.111 66.667 5.05 0.00 45.60 4.63
1143 1774 4.409218 GTAGTGCGTCGTGCCGGA 62.409 66.667 5.05 0.00 45.60 5.14
1144 1775 4.710695 TGTAGTGCGTCGTGCCGG 62.711 66.667 0.00 0.00 45.60 6.13
1146 1777 1.801913 CTCTGTAGTGCGTCGTGCC 60.802 63.158 0.00 0.00 45.60 5.01
1147 1778 2.437343 GCTCTGTAGTGCGTCGTGC 61.437 63.158 0.00 0.00 46.70 5.34
1148 1779 1.081442 TGCTCTGTAGTGCGTCGTG 60.081 57.895 0.00 0.00 37.35 4.35
1151 1782 0.784778 GTTGTGCTCTGTAGTGCGTC 59.215 55.000 2.04 0.00 37.35 5.19
1153 1784 0.508641 GTGTTGTGCTCTGTAGTGCG 59.491 55.000 2.04 0.00 37.35 5.34
1154 1785 1.261619 GTGTGTTGTGCTCTGTAGTGC 59.738 52.381 0.00 0.00 35.32 4.40
1155 1786 1.522676 CGTGTGTTGTGCTCTGTAGTG 59.477 52.381 0.00 0.00 0.00 2.74
1156 1787 1.407618 TCGTGTGTTGTGCTCTGTAGT 59.592 47.619 0.00 0.00 0.00 2.73
1157 1788 1.787155 GTCGTGTGTTGTGCTCTGTAG 59.213 52.381 0.00 0.00 0.00 2.74
1160 1791 0.809636 TGGTCGTGTGTTGTGCTCTG 60.810 55.000 0.00 0.00 0.00 3.35
1162 1793 0.304705 CTTGGTCGTGTGTTGTGCTC 59.695 55.000 0.00 0.00 0.00 4.26
1163 1794 1.714899 GCTTGGTCGTGTGTTGTGCT 61.715 55.000 0.00 0.00 0.00 4.40
1164 1795 1.298339 GCTTGGTCGTGTGTTGTGC 60.298 57.895 0.00 0.00 0.00 4.57
1165 1796 1.526887 CTAGCTTGGTCGTGTGTTGTG 59.473 52.381 0.00 0.00 0.00 3.33
1166 1797 1.540363 CCTAGCTTGGTCGTGTGTTGT 60.540 52.381 5.98 0.00 0.00 3.32
1167 1798 1.148310 CCTAGCTTGGTCGTGTGTTG 58.852 55.000 5.98 0.00 0.00 3.33
1168 1799 0.602905 GCCTAGCTTGGTCGTGTGTT 60.603 55.000 15.85 0.00 0.00 3.32
1169 1800 1.004918 GCCTAGCTTGGTCGTGTGT 60.005 57.895 15.85 0.00 0.00 3.72
1170 1801 0.391661 ATGCCTAGCTTGGTCGTGTG 60.392 55.000 15.85 0.00 0.00 3.82
1171 1802 0.324943 AATGCCTAGCTTGGTCGTGT 59.675 50.000 15.85 0.00 0.00 4.49
1172 1803 0.729116 CAATGCCTAGCTTGGTCGTG 59.271 55.000 15.85 7.30 0.00 4.35
1173 1804 0.392998 CCAATGCCTAGCTTGGTCGT 60.393 55.000 15.85 6.77 37.67 4.34
1174 1805 1.097547 CCCAATGCCTAGCTTGGTCG 61.098 60.000 15.85 2.24 40.28 4.79
1179 1810 2.830370 GCGCCCAATGCCTAGCTT 60.830 61.111 0.00 0.00 36.24 3.74
1686 2513 2.486191 GGTGGTGATGATGAGGATCCAC 60.486 54.545 15.82 8.65 41.82 4.02
1710 2537 8.716674 TTATATTTATGAACGGAGGGAGTACT 57.283 34.615 0.00 0.00 0.00 2.73
1715 2542 8.202461 ACATCTTATATTTATGAACGGAGGGA 57.798 34.615 0.00 0.00 0.00 4.20
1735 2562 3.084786 GTGGCCAGAAGCTAAAACATCT 58.915 45.455 5.11 0.00 43.05 2.90
1742 2676 1.354031 TGGAATGTGGCCAGAAGCTAA 59.646 47.619 5.11 0.00 43.05 3.09
1744 2678 0.610232 GTGGAATGTGGCCAGAAGCT 60.610 55.000 5.11 0.00 43.05 3.74
1746 2680 0.883833 GTGTGGAATGTGGCCAGAAG 59.116 55.000 5.11 0.00 35.77 2.85
1751 2685 2.653726 TGATATGTGTGGAATGTGGCC 58.346 47.619 0.00 0.00 0.00 5.36
1753 2687 6.211587 ACATTTGATATGTGTGGAATGTGG 57.788 37.500 0.00 0.00 36.63 4.17
1754 2688 8.843262 AGATACATTTGATATGTGTGGAATGTG 58.157 33.333 9.14 0.00 37.99 3.21
1755 2689 8.985315 AGATACATTTGATATGTGTGGAATGT 57.015 30.769 0.00 0.00 39.94 2.71
1759 2693 8.923270 TGTCTAGATACATTTGATATGTGTGGA 58.077 33.333 0.00 0.00 33.76 4.02
1783 2728 4.816392 TGAATGTACACGCTAGAACATGT 58.184 39.130 0.00 0.00 33.04 3.21
1784 2729 5.973651 ATGAATGTACACGCTAGAACATG 57.026 39.130 0.00 0.00 33.04 3.21
1785 2730 6.106003 TGAATGAATGTACACGCTAGAACAT 58.894 36.000 0.00 0.00 34.11 2.71
1786 2731 5.474825 TGAATGAATGTACACGCTAGAACA 58.525 37.500 0.00 0.00 0.00 3.18
1787 2732 6.589830 ATGAATGAATGTACACGCTAGAAC 57.410 37.500 0.00 0.00 0.00 3.01
1789 2734 7.609760 AAAATGAATGAATGTACACGCTAGA 57.390 32.000 0.00 0.00 0.00 2.43
1790 2735 8.604035 ACTAAAATGAATGAATGTACACGCTAG 58.396 33.333 0.00 0.00 0.00 3.42
1791 2736 8.487313 ACTAAAATGAATGAATGTACACGCTA 57.513 30.769 0.00 0.00 0.00 4.26
1814 5196 7.423844 TCCACATGTTGTCTAGATTCATACT 57.576 36.000 0.00 0.00 0.00 2.12
1815 5197 7.549134 TGTTCCACATGTTGTCTAGATTCATAC 59.451 37.037 0.00 0.00 0.00 2.39
1816 5198 7.549134 GTGTTCCACATGTTGTCTAGATTCATA 59.451 37.037 0.00 0.00 34.08 2.15
1823 5205 4.008074 AGGTGTTCCACATGTTGTCTAG 57.992 45.455 0.00 0.00 35.86 2.43
1828 5210 5.255710 TGTTTTAGGTGTTCCACATGTTG 57.744 39.130 0.00 0.00 35.86 3.33
1832 5217 9.920946 ATATAAGATGTTTTAGGTGTTCCACAT 57.079 29.630 0.00 0.00 35.86 3.21
1861 6327 2.029020 GGTACGTACTCCCTCCGTTTTT 60.029 50.000 24.07 0.00 36.12 1.94
1862 6328 1.546029 GGTACGTACTCCCTCCGTTTT 59.454 52.381 24.07 0.00 36.12 2.43
1863 6329 1.177401 GGTACGTACTCCCTCCGTTT 58.823 55.000 24.07 0.00 36.12 3.60
1864 6330 0.329596 AGGTACGTACTCCCTCCGTT 59.670 55.000 24.07 0.00 36.12 4.44
1867 6333 1.844687 ACAAGGTACGTACTCCCTCC 58.155 55.000 24.07 7.57 0.00 4.30
1872 6338 3.181512 CGGAGAGAACAAGGTACGTACTC 60.182 52.174 24.07 13.74 0.00 2.59
1874 6340 2.744202 TCGGAGAGAACAAGGTACGTAC 59.256 50.000 17.56 17.56 0.00 3.67
1880 6346 3.099905 TCATCATCGGAGAGAACAAGGT 58.900 45.455 0.00 0.00 43.63 3.50
1881 6347 3.808466 TCATCATCGGAGAGAACAAGG 57.192 47.619 0.00 0.00 43.63 3.61
1882 6348 5.871524 TCTTTTCATCATCGGAGAGAACAAG 59.128 40.000 0.00 0.00 43.63 3.16
1883 6349 5.793817 TCTTTTCATCATCGGAGAGAACAA 58.206 37.500 0.00 0.00 43.63 2.83
1884 6350 5.405935 TCTTTTCATCATCGGAGAGAACA 57.594 39.130 0.00 0.00 43.63 3.18
1885 6351 6.370166 AGTTTCTTTTCATCATCGGAGAGAAC 59.630 38.462 0.00 0.00 43.63 3.01
1886 6352 6.369890 CAGTTTCTTTTCATCATCGGAGAGAA 59.630 38.462 0.00 0.00 43.63 2.87
1888 6354 5.871524 TCAGTTTCTTTTCATCATCGGAGAG 59.128 40.000 0.00 0.00 43.63 3.20
1889 6355 5.793817 TCAGTTTCTTTTCATCATCGGAGA 58.206 37.500 0.00 0.00 45.75 3.71
1890 6356 6.310197 GTTCAGTTTCTTTTCATCATCGGAG 58.690 40.000 0.00 0.00 0.00 4.63
1891 6357 5.181245 GGTTCAGTTTCTTTTCATCATCGGA 59.819 40.000 0.00 0.00 0.00 4.55
1892 6358 5.182001 AGGTTCAGTTTCTTTTCATCATCGG 59.818 40.000 0.00 0.00 0.00 4.18
1894 6360 6.015940 ACCAGGTTCAGTTTCTTTTCATCATC 60.016 38.462 0.00 0.00 0.00 2.92
1897 6363 5.278512 GGACCAGGTTCAGTTTCTTTTCATC 60.279 44.000 0.00 0.00 0.00 2.92
1898 6364 4.584743 GGACCAGGTTCAGTTTCTTTTCAT 59.415 41.667 0.00 0.00 0.00 2.57
1899 6365 3.951680 GGACCAGGTTCAGTTTCTTTTCA 59.048 43.478 0.00 0.00 0.00 2.69
1900 6366 4.207955 AGGACCAGGTTCAGTTTCTTTTC 58.792 43.478 0.00 0.00 0.00 2.29
1902 6368 3.953542 AGGACCAGGTTCAGTTTCTTT 57.046 42.857 0.00 0.00 0.00 2.52
1903 6369 3.202151 TCAAGGACCAGGTTCAGTTTCTT 59.798 43.478 0.00 0.00 0.00 2.52
1904 6370 2.777692 TCAAGGACCAGGTTCAGTTTCT 59.222 45.455 0.00 0.00 0.00 2.52
1905 6371 3.142174 CTCAAGGACCAGGTTCAGTTTC 58.858 50.000 0.00 0.00 0.00 2.78
1906 6372 2.158608 CCTCAAGGACCAGGTTCAGTTT 60.159 50.000 0.00 0.00 37.39 2.66
1907 6373 1.421646 CCTCAAGGACCAGGTTCAGTT 59.578 52.381 0.00 0.00 37.39 3.16
1908 6374 1.059913 CCTCAAGGACCAGGTTCAGT 58.940 55.000 0.00 0.00 37.39 3.41
1909 6375 1.277557 CTCCTCAAGGACCAGGTTCAG 59.722 57.143 0.00 0.00 39.78 3.02
1910 6376 1.352083 CTCCTCAAGGACCAGGTTCA 58.648 55.000 0.00 0.00 39.78 3.18
1920 6386 1.601171 CTCTGCACCCTCCTCAAGG 59.399 63.158 0.00 0.00 45.77 3.61
1921 6387 1.601171 CCTCTGCACCCTCCTCAAG 59.399 63.158 0.00 0.00 0.00 3.02
1922 6388 1.920325 CCCTCTGCACCCTCCTCAA 60.920 63.158 0.00 0.00 0.00 3.02
1923 6389 2.284921 CCCTCTGCACCCTCCTCA 60.285 66.667 0.00 0.00 0.00 3.86
1924 6390 3.086600 CCCCTCTGCACCCTCCTC 61.087 72.222 0.00 0.00 0.00 3.71
1925 6391 3.615811 TCCCCTCTGCACCCTCCT 61.616 66.667 0.00 0.00 0.00 3.69
1926 6392 3.403558 GTCCCCTCTGCACCCTCC 61.404 72.222 0.00 0.00 0.00 4.30
1927 6393 1.566298 AATGTCCCCTCTGCACCCTC 61.566 60.000 0.00 0.00 0.00 4.30
1928 6394 1.142688 AAATGTCCCCTCTGCACCCT 61.143 55.000 0.00 0.00 0.00 4.34
1929 6395 0.251787 AAAATGTCCCCTCTGCACCC 60.252 55.000 0.00 0.00 0.00 4.61
1930 6396 1.177401 GAAAATGTCCCCTCTGCACC 58.823 55.000 0.00 0.00 0.00 5.01
1931 6397 1.815003 CAGAAAATGTCCCCTCTGCAC 59.185 52.381 0.00 0.00 0.00 4.57
1932 6398 1.704628 TCAGAAAATGTCCCCTCTGCA 59.295 47.619 0.00 0.00 36.15 4.41
1933 6399 2.496899 TCAGAAAATGTCCCCTCTGC 57.503 50.000 0.00 0.00 36.15 4.26
1934 6400 3.944015 GTCATCAGAAAATGTCCCCTCTG 59.056 47.826 0.00 0.00 37.28 3.35
1935 6401 3.848975 AGTCATCAGAAAATGTCCCCTCT 59.151 43.478 0.00 0.00 0.00 3.69
1936 6402 4.227864 AGTCATCAGAAAATGTCCCCTC 57.772 45.455 0.00 0.00 0.00 4.30
1937 6403 5.032846 TCTAGTCATCAGAAAATGTCCCCT 58.967 41.667 0.00 0.00 0.00 4.79
1938 6404 5.359194 TCTAGTCATCAGAAAATGTCCCC 57.641 43.478 0.00 0.00 0.00 4.81
1939 6405 6.586344 TCATCTAGTCATCAGAAAATGTCCC 58.414 40.000 0.00 0.00 0.00 4.46
1940 6406 8.557864 CAATCATCTAGTCATCAGAAAATGTCC 58.442 37.037 0.00 0.00 0.00 4.02
1941 6407 8.068977 GCAATCATCTAGTCATCAGAAAATGTC 58.931 37.037 0.00 0.00 0.00 3.06
1942 6408 7.555195 TGCAATCATCTAGTCATCAGAAAATGT 59.445 33.333 0.00 0.00 0.00 2.71
1943 6409 7.927048 TGCAATCATCTAGTCATCAGAAAATG 58.073 34.615 0.00 0.00 0.00 2.32
1944 6410 7.255173 GCTGCAATCATCTAGTCATCAGAAAAT 60.255 37.037 0.00 0.00 0.00 1.82
1945 6411 6.037940 GCTGCAATCATCTAGTCATCAGAAAA 59.962 38.462 0.00 0.00 0.00 2.29
1946 6412 5.526479 GCTGCAATCATCTAGTCATCAGAAA 59.474 40.000 0.00 0.00 0.00 2.52
1947 6413 5.055144 GCTGCAATCATCTAGTCATCAGAA 58.945 41.667 0.00 0.00 0.00 3.02
1948 6414 4.100498 TGCTGCAATCATCTAGTCATCAGA 59.900 41.667 0.00 0.00 0.00 3.27
1949 6415 4.377897 TGCTGCAATCATCTAGTCATCAG 58.622 43.478 0.00 0.00 0.00 2.90
1950 6416 4.377897 CTGCTGCAATCATCTAGTCATCA 58.622 43.478 3.02 0.00 0.00 3.07
1951 6417 3.747010 CCTGCTGCAATCATCTAGTCATC 59.253 47.826 3.02 0.00 0.00 2.92
1952 6418 3.496337 CCCTGCTGCAATCATCTAGTCAT 60.496 47.826 3.02 0.00 0.00 3.06
1953 6419 2.158856 CCCTGCTGCAATCATCTAGTCA 60.159 50.000 3.02 0.00 0.00 3.41
1969 6435 0.685458 AGAATGTGAATGCCCCCTGC 60.685 55.000 0.00 0.00 41.77 4.85
1971 6437 2.208872 ACTAGAATGTGAATGCCCCCT 58.791 47.619 0.00 0.00 0.00 4.79
1986 6452 6.495872 ACAAACTCACATGTTACCCTACTAGA 59.504 38.462 0.00 0.00 0.00 2.43
2007 6473 8.976353 ACAGAAACATATTAATATGGGCACAAA 58.024 29.630 30.00 0.00 43.38 2.83
2008 6474 8.532186 ACAGAAACATATTAATATGGGCACAA 57.468 30.769 30.00 0.00 43.38 3.33
2057 6529 9.612620 CAATGAGTGTTTACCAAATAAGTTCTC 57.387 33.333 0.00 0.00 0.00 2.87
2060 6532 8.908903 TGTCAATGAGTGTTTACCAAATAAGTT 58.091 29.630 0.00 0.00 0.00 2.66
2087 6559 3.135348 TCCTGAAGCACCTCCTATTGATG 59.865 47.826 0.00 0.00 0.00 3.07
2088 6560 3.387962 TCCTGAAGCACCTCCTATTGAT 58.612 45.455 0.00 0.00 0.00 2.57
2102 7518 3.955650 TCCTAAAACCGTCTCCTGAAG 57.044 47.619 0.00 0.00 0.00 3.02
2104 7520 4.693042 TTTTCCTAAAACCGTCTCCTGA 57.307 40.909 0.00 0.00 0.00 3.86
2143 7561 9.294614 AGTTTTTCTTTTCATCTTATCTCTGCT 57.705 29.630 0.00 0.00 0.00 4.24
2144 7562 9.905171 AAGTTTTTCTTTTCATCTTATCTCTGC 57.095 29.630 0.00 0.00 31.57 4.26
2181 7599 0.113580 GGGGCCTTGTCCTGGTAAAA 59.886 55.000 0.84 0.00 0.00 1.52
2182 7600 1.068943 TGGGGCCTTGTCCTGGTAAA 61.069 55.000 0.84 0.00 0.00 2.01
2184 7602 1.230149 ATGGGGCCTTGTCCTGGTA 60.230 57.895 0.84 0.00 0.00 3.25
2185 7603 2.535317 ATGGGGCCTTGTCCTGGT 60.535 61.111 0.84 0.00 0.00 4.00
2186 7604 1.867595 AAGATGGGGCCTTGTCCTGG 61.868 60.000 0.84 0.00 0.00 4.45
2211 7706 8.861033 ATCATAATTGGAAACGAATGTCAATG 57.139 30.769 0.00 0.00 0.00 2.82
2245 7740 5.205565 GTTTGAAGTTGGAAATCGAGTGTC 58.794 41.667 0.00 0.00 0.00 3.67
2276 7876 3.245193 ACGGAGGGAGTAAGAGTGTAAGT 60.245 47.826 0.00 0.00 0.00 2.24
2277 7877 3.354467 ACGGAGGGAGTAAGAGTGTAAG 58.646 50.000 0.00 0.00 0.00 2.34
2279 7879 2.306805 TGACGGAGGGAGTAAGAGTGTA 59.693 50.000 0.00 0.00 0.00 2.90
2280 7880 1.075050 TGACGGAGGGAGTAAGAGTGT 59.925 52.381 0.00 0.00 0.00 3.55
2281 7881 1.473278 GTGACGGAGGGAGTAAGAGTG 59.527 57.143 0.00 0.00 0.00 3.51
2282 7882 1.836802 GTGACGGAGGGAGTAAGAGT 58.163 55.000 0.00 0.00 0.00 3.24
2283 7883 0.733729 CGTGACGGAGGGAGTAAGAG 59.266 60.000 0.00 0.00 0.00 2.85
2285 7885 1.742761 TACGTGACGGAGGGAGTAAG 58.257 55.000 10.66 0.00 0.00 2.34
2288 7888 2.425143 TATTACGTGACGGAGGGAGT 57.575 50.000 10.66 0.00 0.00 3.85
2289 7889 4.758674 TCTTATATTACGTGACGGAGGGAG 59.241 45.833 10.66 0.00 0.00 4.30
2291 7891 5.218139 GTTCTTATATTACGTGACGGAGGG 58.782 45.833 10.66 0.00 0.00 4.30
2292 7892 4.908156 CGTTCTTATATTACGTGACGGAGG 59.092 45.833 10.66 0.00 0.00 4.30
2293 7893 4.908156 CCGTTCTTATATTACGTGACGGAG 59.092 45.833 10.66 0.00 39.09 4.63
2295 7895 4.601019 ACCGTTCTTATATTACGTGACGG 58.399 43.478 10.66 9.73 42.01 4.79
2297 7897 6.531240 TCCAAACCGTTCTTATATTACGTGAC 59.469 38.462 0.00 0.00 33.68 3.67
2298 7898 6.629128 TCCAAACCGTTCTTATATTACGTGA 58.371 36.000 0.00 0.00 33.68 4.35
2299 7899 6.890663 TCCAAACCGTTCTTATATTACGTG 57.109 37.500 0.00 0.00 33.68 4.49
2301 7901 7.568861 GCAGATCCAAACCGTTCTTATATTACG 60.569 40.741 0.00 0.00 35.20 3.18
2302 7902 7.307811 GGCAGATCCAAACCGTTCTTATATTAC 60.308 40.741 0.00 0.00 34.01 1.89
2303 7903 6.708949 GGCAGATCCAAACCGTTCTTATATTA 59.291 38.462 0.00 0.00 34.01 0.98
2305 7905 5.063880 GGCAGATCCAAACCGTTCTTATAT 58.936 41.667 0.00 0.00 34.01 0.86
2307 7907 3.279434 GGCAGATCCAAACCGTTCTTAT 58.721 45.455 0.00 0.00 34.01 1.73
2308 7908 2.617021 GGGCAGATCCAAACCGTTCTTA 60.617 50.000 0.00 0.00 36.21 2.10
2309 7909 1.534729 GGCAGATCCAAACCGTTCTT 58.465 50.000 0.00 0.00 34.01 2.52
2311 7911 0.608035 TGGGCAGATCCAAACCGTTC 60.608 55.000 0.00 0.00 36.21 3.95
2312 7912 0.039618 ATGGGCAGATCCAAACCGTT 59.960 50.000 0.00 0.00 40.62 4.44
2314 7914 1.135024 CAAATGGGCAGATCCAAACCG 60.135 52.381 0.00 0.00 40.62 4.44
2319 8075 1.854939 AGATCCAAATGGGCAGATCCA 59.145 47.619 0.00 0.00 41.60 3.41
2325 8081 7.127032 ACCAATATAAAAAGATCCAAATGGGCA 59.873 33.333 0.00 0.00 36.21 5.36
2355 8111 8.894731 GGAAGCGAGTGTCATTATCTATATCTA 58.105 37.037 0.00 0.00 0.00 1.98
2356 8112 7.613801 AGGAAGCGAGTGTCATTATCTATATCT 59.386 37.037 0.00 0.00 0.00 1.98
2357 8113 7.767261 AGGAAGCGAGTGTCATTATCTATATC 58.233 38.462 0.00 0.00 0.00 1.63
2359 8115 7.448777 AGAAGGAAGCGAGTGTCATTATCTATA 59.551 37.037 0.00 0.00 0.00 1.31
2361 8117 5.594725 AGAAGGAAGCGAGTGTCATTATCTA 59.405 40.000 0.00 0.00 0.00 1.98
2362 8118 4.404073 AGAAGGAAGCGAGTGTCATTATCT 59.596 41.667 0.00 0.00 0.00 1.98
2363 8119 4.688021 AGAAGGAAGCGAGTGTCATTATC 58.312 43.478 0.00 0.00 0.00 1.75
2364 8120 4.404073 AGAGAAGGAAGCGAGTGTCATTAT 59.596 41.667 0.00 0.00 0.00 1.28
2365 8121 3.764434 AGAGAAGGAAGCGAGTGTCATTA 59.236 43.478 0.00 0.00 0.00 1.90
2367 8123 2.175202 AGAGAAGGAAGCGAGTGTCAT 58.825 47.619 0.00 0.00 0.00 3.06
2395 8354 0.322008 AGCCCAGCTAAAGTCACAGC 60.322 55.000 0.00 0.00 36.99 4.40
2399 8358 1.685224 CCCAGCCCAGCTAAAGTCA 59.315 57.895 0.00 0.00 36.40 3.41
2400 8359 1.750780 GCCCAGCCCAGCTAAAGTC 60.751 63.158 0.00 0.00 36.40 3.01
2453 8653 5.673818 GCCTGAATAATTGGAAACGAGTGTC 60.674 44.000 0.00 0.00 0.00 3.67
2456 8656 4.589908 AGCCTGAATAATTGGAAACGAGT 58.410 39.130 0.00 0.00 0.00 4.18
2457 8657 5.123820 TGAAGCCTGAATAATTGGAAACGAG 59.876 40.000 0.00 0.00 0.00 4.18
2458 8658 5.007034 TGAAGCCTGAATAATTGGAAACGA 58.993 37.500 0.00 0.00 0.00 3.85
2459 8659 5.106157 ACTGAAGCCTGAATAATTGGAAACG 60.106 40.000 0.00 0.00 0.00 3.60
2460 8660 6.272822 ACTGAAGCCTGAATAATTGGAAAC 57.727 37.500 0.00 0.00 0.00 2.78
2462 8662 6.349280 CGAAACTGAAGCCTGAATAATTGGAA 60.349 38.462 0.00 0.00 0.00 3.53
2463 8663 5.123820 CGAAACTGAAGCCTGAATAATTGGA 59.876 40.000 0.00 0.00 0.00 3.53
2466 8666 4.142381 GCCGAAACTGAAGCCTGAATAATT 60.142 41.667 0.00 0.00 0.00 1.40
2467 8667 3.378427 GCCGAAACTGAAGCCTGAATAAT 59.622 43.478 0.00 0.00 0.00 1.28
2471 8671 0.889186 GGCCGAAACTGAAGCCTGAA 60.889 55.000 0.00 0.00 42.34 3.02
2472 8672 1.302511 GGCCGAAACTGAAGCCTGA 60.303 57.895 0.00 0.00 42.34 3.86
2473 8673 2.335712 GGGCCGAAACTGAAGCCTG 61.336 63.158 0.00 0.00 45.07 4.85
2480 8741 2.513897 GATCCCGGGCCGAAACTG 60.514 66.667 30.79 10.20 0.00 3.16
2567 8911 3.072468 TAGGTCGCGTGGGAAGGG 61.072 66.667 5.77 0.00 0.00 3.95
2677 9121 4.792804 GGCAGAGGCAGCAGGGAC 62.793 72.222 0.00 0.00 43.71 4.46
2803 9511 5.667626 AGGTAGAGATTACCATGTCCATGTT 59.332 40.000 6.53 0.00 39.99 2.71
2827 9535 3.553828 TCAGCTCAATCATGCATCAGA 57.446 42.857 0.00 0.00 0.00 3.27
2982 9722 2.554806 TGGCACGACGATACTAACTG 57.445 50.000 0.00 0.00 0.00 3.16
3021 9856 6.380079 AATGAAACACTAGGACCAGAGAAT 57.620 37.500 0.00 0.00 0.00 2.40
3040 9875 6.543465 CACTAAGCCATCCTTGTATGAAATGA 59.457 38.462 0.00 0.00 34.95 2.57
3041 9876 6.543465 TCACTAAGCCATCCTTGTATGAAATG 59.457 38.462 0.00 0.00 34.95 2.32
3053 10136 3.567478 ACCATCTTCACTAAGCCATCC 57.433 47.619 0.00 0.00 32.36 3.51
3065 10148 1.379527 CCCGGCTGTTTACCATCTTC 58.620 55.000 0.00 0.00 0.00 2.87
3124 11074 2.562912 CAAGCACCGCACCATGAC 59.437 61.111 0.00 0.00 0.00 3.06
3125 11075 3.364441 GCAAGCACCGCACCATGA 61.364 61.111 0.00 0.00 0.00 3.07
3141 11091 0.250467 TGAGTTGAGCCCAGAACTGC 60.250 55.000 0.00 0.00 32.47 4.40
3166 11118 3.195825 GGCTACATTATATCCAGCGGTCT 59.804 47.826 0.00 0.00 32.97 3.85
3200 11154 4.422073 TCTGTCGATATGCCTTTTCCAT 57.578 40.909 0.00 0.00 0.00 3.41
3204 11158 6.992123 TGATGTATTCTGTCGATATGCCTTTT 59.008 34.615 0.00 0.00 0.00 2.27
3220 11184 2.668457 CGATAAGCGGCCTGATGTATTC 59.332 50.000 0.00 0.00 36.03 1.75
3240 11204 2.612219 GAACAATTGATGGCCGGCCG 62.612 60.000 39.00 25.28 39.42 6.13
3242 11206 0.246086 TTGAACAATTGATGGCCGGC 59.754 50.000 21.18 21.18 0.00 6.13
3243 11207 1.736696 GCTTGAACAATTGATGGCCGG 60.737 52.381 13.59 0.00 0.00 6.13
3285 11259 5.812642 CCATTCTACCTCTACAACACATGTC 59.187 44.000 0.00 0.00 42.70 3.06
3334 11308 6.371548 TGGAGAAACTGAGCACATACAAATAC 59.628 38.462 0.00 0.00 0.00 1.89
3355 11329 7.823665 TCATCATTCATCAAGAAGTTTTGGAG 58.176 34.615 0.00 0.00 40.15 3.86
3391 11399 0.096454 GGTCGCCATGTAAACGAAGC 59.904 55.000 0.00 0.00 37.60 3.86
3445 11458 1.515519 GTCATTGCTACGCCGTCGA 60.516 57.895 0.00 0.00 39.41 4.20
3531 11573 0.744771 GAACTTGGAGCGGGACATCC 60.745 60.000 0.00 0.00 36.05 3.51
3728 11770 2.397597 GCTGAAGAGGAAGGAGGAGAT 58.602 52.381 0.00 0.00 0.00 2.75
4087 12129 8.744652 TGTGACTTGGTTTATCTTTCTCAAAAA 58.255 29.630 0.00 0.00 0.00 1.94
4088 12130 8.188139 GTGTGACTTGGTTTATCTTTCTCAAAA 58.812 33.333 0.00 0.00 0.00 2.44
4089 12131 7.338196 TGTGTGACTTGGTTTATCTTTCTCAAA 59.662 33.333 0.00 0.00 0.00 2.69
4090 12132 6.826231 TGTGTGACTTGGTTTATCTTTCTCAA 59.174 34.615 0.00 0.00 0.00 3.02
4091 12133 6.353323 TGTGTGACTTGGTTTATCTTTCTCA 58.647 36.000 0.00 0.00 0.00 3.27
4092 12134 6.861065 TGTGTGACTTGGTTTATCTTTCTC 57.139 37.500 0.00 0.00 0.00 2.87
4093 12135 7.639113 TTTGTGTGACTTGGTTTATCTTTCT 57.361 32.000 0.00 0.00 0.00 2.52
4094 12136 8.871686 AATTTGTGTGACTTGGTTTATCTTTC 57.128 30.769 0.00 0.00 0.00 2.62
4095 12137 9.097257 CAAATTTGTGTGACTTGGTTTATCTTT 57.903 29.630 10.15 0.00 0.00 2.52
4096 12138 7.710475 CCAAATTTGTGTGACTTGGTTTATCTT 59.290 33.333 16.73 0.00 33.34 2.40
4097 12139 7.069331 TCCAAATTTGTGTGACTTGGTTTATCT 59.931 33.333 16.73 0.00 38.16 1.98
4098 12140 7.206687 TCCAAATTTGTGTGACTTGGTTTATC 58.793 34.615 16.73 0.00 38.16 1.75
4099 12141 7.118496 TCCAAATTTGTGTGACTTGGTTTAT 57.882 32.000 16.73 0.00 38.16 1.40
4100 12142 6.531503 TCCAAATTTGTGTGACTTGGTTTA 57.468 33.333 16.73 0.00 38.16 2.01
4101 12143 5.413309 TCCAAATTTGTGTGACTTGGTTT 57.587 34.783 16.73 0.00 38.16 3.27
4102 12144 4.680440 GCTCCAAATTTGTGTGACTTGGTT 60.680 41.667 16.73 0.00 38.16 3.67
4103 12145 3.181476 GCTCCAAATTTGTGTGACTTGGT 60.181 43.478 16.73 0.00 38.16 3.67
4104 12146 3.068590 AGCTCCAAATTTGTGTGACTTGG 59.931 43.478 16.73 0.00 38.31 3.61
4105 12147 4.293415 GAGCTCCAAATTTGTGTGACTTG 58.707 43.478 16.73 0.00 0.00 3.16
4106 12148 3.003689 CGAGCTCCAAATTTGTGTGACTT 59.996 43.478 16.73 0.00 0.00 3.01
4107 12149 2.549754 CGAGCTCCAAATTTGTGTGACT 59.450 45.455 16.73 6.76 0.00 3.41
4108 12150 2.548057 TCGAGCTCCAAATTTGTGTGAC 59.452 45.455 16.73 4.98 0.00 3.67
4109 12151 2.844946 TCGAGCTCCAAATTTGTGTGA 58.155 42.857 16.73 6.46 0.00 3.58
4110 12152 3.558505 CTTCGAGCTCCAAATTTGTGTG 58.441 45.455 16.73 9.99 0.00 3.82
4111 12153 2.030805 GCTTCGAGCTCCAAATTTGTGT 60.031 45.455 16.73 0.00 38.45 3.72
4112 12154 2.589014 GCTTCGAGCTCCAAATTTGTG 58.411 47.619 16.73 10.13 38.45 3.33
4113 12155 1.541588 GGCTTCGAGCTCCAAATTTGT 59.458 47.619 16.73 0.00 41.99 2.83
4114 12156 1.541147 TGGCTTCGAGCTCCAAATTTG 59.459 47.619 11.40 11.40 41.99 2.32
4115 12157 1.909700 TGGCTTCGAGCTCCAAATTT 58.090 45.000 8.47 0.00 41.99 1.82
4116 12158 1.909700 TTGGCTTCGAGCTCCAAATT 58.090 45.000 8.47 0.00 41.99 1.82
4117 12159 1.909700 TTTGGCTTCGAGCTCCAAAT 58.090 45.000 18.02 0.00 42.84 2.32
4118 12160 1.686355 TTTTGGCTTCGAGCTCCAAA 58.314 45.000 18.02 18.02 45.12 3.28
4119 12161 1.686355 TTTTTGGCTTCGAGCTCCAA 58.314 45.000 8.47 3.70 41.99 3.53
4120 12162 3.412722 TTTTTGGCTTCGAGCTCCA 57.587 47.368 8.47 0.00 41.99 3.86
4186 12228 9.129209 CCGAAAATAAGGTTGAAATCTCTTTTC 57.871 33.333 10.87 10.87 43.42 2.29
4187 12229 8.856103 TCCGAAAATAAGGTTGAAATCTCTTTT 58.144 29.630 0.00 0.00 0.00 2.27
4188 12230 8.404107 TCCGAAAATAAGGTTGAAATCTCTTT 57.596 30.769 0.00 0.00 0.00 2.52
4189 12231 7.996098 TCCGAAAATAAGGTTGAAATCTCTT 57.004 32.000 0.00 0.00 0.00 2.85
4190 12232 9.853177 ATATCCGAAAATAAGGTTGAAATCTCT 57.147 29.630 0.00 0.00 0.00 3.10
4192 12234 9.627123 TGATATCCGAAAATAAGGTTGAAATCT 57.373 29.630 0.00 0.00 0.00 2.40
4216 12258 8.668353 GCTTGTGTGTAAATCTTCTCATAATGA 58.332 33.333 0.00 0.00 0.00 2.57
4217 12259 7.912250 GGCTTGTGTGTAAATCTTCTCATAATG 59.088 37.037 0.00 0.00 0.00 1.90
4218 12260 7.067494 GGGCTTGTGTGTAAATCTTCTCATAAT 59.933 37.037 0.00 0.00 0.00 1.28
4219 12261 6.374333 GGGCTTGTGTGTAAATCTTCTCATAA 59.626 38.462 0.00 0.00 0.00 1.90
4220 12262 5.880332 GGGCTTGTGTGTAAATCTTCTCATA 59.120 40.000 0.00 0.00 0.00 2.15
4221 12263 4.702131 GGGCTTGTGTGTAAATCTTCTCAT 59.298 41.667 0.00 0.00 0.00 2.90
4222 12264 4.072131 GGGCTTGTGTGTAAATCTTCTCA 58.928 43.478 0.00 0.00 0.00 3.27
4223 12265 4.072131 TGGGCTTGTGTGTAAATCTTCTC 58.928 43.478 0.00 0.00 0.00 2.87
4224 12266 4.098914 TGGGCTTGTGTGTAAATCTTCT 57.901 40.909 0.00 0.00 0.00 2.85
4225 12267 4.846779 TTGGGCTTGTGTGTAAATCTTC 57.153 40.909 0.00 0.00 0.00 2.87
4226 12268 5.772672 TGTATTGGGCTTGTGTGTAAATCTT 59.227 36.000 0.00 0.00 0.00 2.40
4227 12269 5.321102 TGTATTGGGCTTGTGTGTAAATCT 58.679 37.500 0.00 0.00 0.00 2.40
4228 12270 5.637006 TGTATTGGGCTTGTGTGTAAATC 57.363 39.130 0.00 0.00 0.00 2.17
4229 12271 5.480073 ACATGTATTGGGCTTGTGTGTAAAT 59.520 36.000 0.00 0.00 0.00 1.40
4230 12272 4.830046 ACATGTATTGGGCTTGTGTGTAAA 59.170 37.500 0.00 0.00 0.00 2.01
4231 12273 4.402829 ACATGTATTGGGCTTGTGTGTAA 58.597 39.130 0.00 0.00 0.00 2.41
4232 12274 4.027674 ACATGTATTGGGCTTGTGTGTA 57.972 40.909 0.00 0.00 0.00 2.90
4233 12275 2.875296 ACATGTATTGGGCTTGTGTGT 58.125 42.857 0.00 0.00 0.00 3.72
4234 12276 6.882610 ATATACATGTATTGGGCTTGTGTG 57.117 37.500 22.90 0.00 0.00 3.82
4235 12277 9.667107 GTATATATACATGTATTGGGCTTGTGT 57.333 33.333 22.90 0.00 33.52 3.72
4236 12278 9.890629 AGTATATATACATGTATTGGGCTTGTG 57.109 33.333 22.90 0.00 35.74 3.33
4240 12282 9.434275 TGCTAGTATATATACATGTATTGGGCT 57.566 33.333 22.90 15.90 35.74 5.19
4248 12290 9.449719 GGCCTTTTTGCTAGTATATATACATGT 57.550 33.333 22.00 2.69 35.74 3.21
4249 12291 8.893727 GGGCCTTTTTGCTAGTATATATACATG 58.106 37.037 22.00 15.19 35.74 3.21
4250 12292 7.769044 CGGGCCTTTTTGCTAGTATATATACAT 59.231 37.037 22.00 11.32 35.74 2.29
4251 12293 7.101054 CGGGCCTTTTTGCTAGTATATATACA 58.899 38.462 22.00 9.40 35.74 2.29
4252 12294 7.064253 CACGGGCCTTTTTGCTAGTATATATAC 59.936 40.741 14.05 14.05 0.00 1.47
4253 12295 7.101054 CACGGGCCTTTTTGCTAGTATATATA 58.899 38.462 0.84 0.00 0.00 0.86
4254 12296 5.938125 CACGGGCCTTTTTGCTAGTATATAT 59.062 40.000 0.84 0.00 0.00 0.86
4255 12297 5.302360 CACGGGCCTTTTTGCTAGTATATA 58.698 41.667 0.84 0.00 0.00 0.86
4256 12298 4.134563 CACGGGCCTTTTTGCTAGTATAT 58.865 43.478 0.84 0.00 0.00 0.86
4298 12340 5.763876 AGACTTAGGGAGTACTTTTGCAT 57.236 39.130 0.00 0.00 39.19 3.96
4299 12341 6.675413 TTAGACTTAGGGAGTACTTTTGCA 57.325 37.500 0.00 0.00 39.19 4.08
4300 12342 6.539103 CCATTAGACTTAGGGAGTACTTTTGC 59.461 42.308 0.00 0.00 39.19 3.68
4301 12343 6.539103 GCCATTAGACTTAGGGAGTACTTTTG 59.461 42.308 0.00 0.00 39.19 2.44
4413 12478 4.870221 AGACCGTCGGCAAATAAATTAC 57.130 40.909 12.28 0.00 0.00 1.89
4546 12617 2.093500 TGAAGGGATGAACATGTCTCCG 60.093 50.000 0.00 0.00 0.00 4.63
4693 12766 6.097839 AGCAGTCGAGGTAAATTGGTATTCTA 59.902 38.462 0.00 0.00 0.00 2.10
4776 12849 6.606395 AGGAAAGAAGAGATTTAGCATGCAAT 59.394 34.615 21.98 11.89 0.00 3.56
4777 12850 5.948162 AGGAAAGAAGAGATTTAGCATGCAA 59.052 36.000 21.98 6.70 0.00 4.08
4887 12990 2.620234 CCTCCCATAGGGCAACTGA 58.380 57.895 0.00 0.00 43.94 3.41
4943 13061 5.016831 AGAAACCCGGCTTCATAAGATTTT 58.983 37.500 14.78 0.00 0.00 1.82
4988 13109 8.054236 GTGCTAAACATGTGTCGTATTATGTAC 58.946 37.037 0.00 0.00 33.70 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.